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<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPI8</accession>
    <name>A0A0M2UPI8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03279</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000300">
        <property type="protein sequence ID" value="KKO18033.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18033">
        <property type="protein sequence ID" value="KKO18033"/>
        <property type="gene ID" value="BROFUL_03279"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="1">
        <location>
            <begin position="5"/>
            <end position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18033.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="348" mass="39409" checksum="582442BE78CE38DB" modified="2015-11-11" version="1">MIATDVLIVGGGIIGVSLAREMAGRYPGLTITLLEKEAAVACHASGRNSGVLHAGFYYSPDSLKARFTSEGNRLLTDYCLQHHLTINRCGKIVVARNEKEREAIFELKRRGDKNGVELEIIDENTLETLEPNARTCDKALYSPNTSVVNPAEVVGHIVRNLQGNVTVLLHEKFVRREGGATVRTNKRKIQFRYFINSAGLYADKIAHQFGIGRKYTLIPFKGLYLEYKDKDLLRRHIYPVPNLNNPFLGVHFTITAAGKMKIGPTAIPAFWRENYQGLSNFSPKEFFEVMYRESGLFLANAFHFRNLAFEEMKKYYRHYFIQQAAHLVKAIDTSQFGSYLNPGIRHSC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPL9</accession>
    <name>A0A0M2UPL9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03249</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000297">
        <property type="protein sequence ID" value="KKO18063.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18063">
        <property type="protein sequence ID" value="KKO18063"/>
        <property type="gene ID" value="BROFUL_03249"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4005"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="39"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="62"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="244"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18063.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="266" mass="29910" checksum="0606CF78F0A91B86" modified="2015-11-11" version="1">MAAEKQSEAISYRLPPGAFDKGTAWADFHRARTLMNKSFLTNGIAAMAFGISYGMPEFFGRNALMLASLFALSGALTNWLAIYMLFERIPGLYGSGIVALRFDQFKESIRSLIMQNFFTKENFVKVAQNTLPHTIQPELVLDKIDFDDVFNGLVLVIKNSSFGGMFTLFGGEKALAPLRDPFKKEFEKRTSDILRNIDVAAILQKETDFESFRSRIAVMVDTTVNELTPRRVKQIVEEMMRSHLGWLVVWGGVFGALIGFISAVFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ23</accession>
    <name>A0A0M2UQ23_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03141</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000287">
        <property type="protein sequence ID" value="KKO18188.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18188">
        <property type="protein sequence ID" value="KKO18188"/>
        <property type="gene ID" value="BROFUL_03141"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005643913" evidence="2">
        <location>
            <begin position="23"/>
            <end position="678"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="598"/>
            <end position="619"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="626"/>
            <end position="649"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18188.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="678" mass="76187" checksum="4EE9A61A050DE31E" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQB2</accession>
    <name>A0A0M2UQB2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Flagellar M-ring protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="primary">fliF</name>
        <name evidence="13" type="ORF">BROFUL_03005</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">The M ring may be actively involved in energy transduction.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 9">Bacterial flagellum basal body</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the FliF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18278.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18278">
        <property type="protein sequence ID" value="KKO18278"/>
        <property type="gene ID" value="BROFUL_03005"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3713"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009431">
        <property type="term" value="C:bacterial-type flagellum basal body, MS ring"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003774">
        <property type="term" value="F:cytoskeletal motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013556">
        <property type="entry name" value="Flag_M-ring_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000067">
        <property type="entry name" value="FlgMring_FliF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006182">
        <property type="entry name" value="FliF_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043427">
        <property type="entry name" value="YscJ/FliF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30046">
        <property type="entry name" value="PTHR30046"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30046:SF0">
        <property type="entry name" value="PTHR30046:SF0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01514">
        <property type="entry name" value="YscJ_FliF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08345">
        <property type="entry name" value="YscJ_FliF_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004862">
        <property type="entry name" value="FliF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01009">
        <property type="entry name" value="FLGMRINGFLIF"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00206">
        <property type="entry name" value="fliF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="13" id="KW-0966">Cell projection</keyword>
    <keyword evidence="13" id="KW-0969">Cilium</keyword>
    <keyword evidence="13" id="KW-0282">Flagellum</keyword>
    <keyword evidence="7 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="25"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="447"/>
            <end position="465"/>
        </location>
    </feature>
    <feature type="domain" description="YscJ_FliF" evidence="11">
        <location>
            <begin position="46"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="domain" description="YscJ_FliF_C" evidence="12">
        <location>
            <begin position="255"/>
            <end position="423"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRNR" id="PIRNR004862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF01514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF08345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO18278.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="547" mass="60952" checksum="19E11887C9BC3E39" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQC1</accession>
    <name>A0A0M2UQC1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 12">Flagellar biosynthetic protein FliP</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12 13" type="primary">fliP</name>
        <name evidence="13" type="ORF">BROFUL_03015</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Plays a role in the flagellum-specific transport system.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="12">Cell membrane</location>
            <topology evidence="12">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="12">Bacterial flagellum basal body</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 12">Belongs to the FliP/MopC/SpaP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18288">
        <property type="protein sequence ID" value="KKO18288"/>
        <property type="gene ID" value="BROFUL_03015"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3723"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009425">
        <property type="term" value="C:bacterial-type flagellum basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044781">
        <property type="term" value="P:bacterial-type flagellum organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005837">
        <property type="entry name" value="FliP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005838">
        <property type="entry name" value="T3SS_IM_P"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30587">
        <property type="entry name" value="PTHR30587"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30587:SF0">
        <property type="entry name" value="PTHR30587:SF0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00813">
        <property type="entry name" value="FliP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00951">
        <property type="entry name" value="FLGBIOSNFLIP"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01302">
        <property type="entry name" value="TYPE3IMPPROT"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01103">
        <property type="entry name" value="fliP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01060">
        <property type="entry name" value="FLIP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01061">
        <property type="entry name" value="FLIP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="7 12" id="KW-1005">Bacterial flagellum biogenesis</keyword>
    <keyword evidence="11 12" id="KW-1006">Bacterial flagellum protein export</keyword>
    <keyword evidence="5 12" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="13" id="KW-0966">Cell projection</keyword>
    <keyword evidence="13" id="KW-0969">Cilium</keyword>
    <keyword evidence="13" id="KW-0282">Flagellum</keyword>
    <keyword evidence="9 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-0653">Protein transport</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 12" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4 12" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="54"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="96"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="197"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="233"/>
            <end position="250"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006257"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU362069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO18288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="254" mass="28206" checksum="6D6F446E6C3F5DD6" modified="2015-11-11" version="1">MKSRLIAYGVCATIVICGCMDIVQAANEASVPLKLTMSIDNIGKPKEVASTLKIVLFLTVLSLLPGLLLTMTSFTRIIIVLSFVRKALSFQTLPPNQILIGISLFLTIFVMAPVWKQVNSEAVQPYLKEEITQNEALQRGLVPFQNFMLKQTREKDIALFMKIAKMEKPKSVKDVPIHIIIPAFITSELKTAFQMGFLLFLPFLVIDMVVACVLTAMGMVMLPPAMISMPFKLILFVLVDGWQLIIQSLISSVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQF8</accession>
    <name>A0A0M2UQF8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03204</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000293">
        <property type="protein sequence ID" value="KKO18102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18102">
        <property type="protein sequence ID" value="KKO18102"/>
        <property type="gene ID" value="BROFUL_03204"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_11" evidence="1">
        <location>
            <begin position="51"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="231" mass="27273" checksum="EBA12BA6809EEF1B" modified="2015-11-11" version="1">MMKQLIKNFINDVLKFDIKLLKKGCGYEFERFSYQFKHINFDIHQGEKVLDIGSGQDPFPLATHLADLYLGDTTHRFRPLKIDNRPFIVCNIGAMPFADKAFDFLYCSHVLEHTEDPARACDELMRIGKRGYIETPTKTSDILFNFIRLPFHHRWHIEVLGDTIIFLEWKNSELIGLGTNYFFEQFQSKWTNPIQETIHNNRSLFMNMMLWHTRFDYLVISKDGKILNSTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQI4</accession>
    <name>A0A0M2UQI4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Aminotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_03371</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 3 5">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17920">
        <property type="protein sequence ID" value="KKO17920"/>
        <property type="gene ID" value="BROFUL_03371"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4147"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000192">
        <property type="entry name" value="Aminotrans_V_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020578">
        <property type="entry name" value="Aminotrans_V_PyrdxlP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024169">
        <property type="entry name" value="SP_NH2Trfase/AEP_transaminase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00266">
        <property type="entry name" value="Aminotran_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000524">
        <property type="entry name" value="SPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00595">
        <property type="entry name" value="AA_TRANSFER_CLASS_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="3" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_5" evidence="6">
        <location>
            <begin position="7"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="3">
        <location>
            <position position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000524-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU004075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU004504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO17920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="383" mass="41862" checksum="292C5160405FC54A" modified="2015-11-11" version="1">MRMKKNYLFTPGPTMVPPEVALAEAQTMIHHRTPQFSQIFYELSEDLKYLFQTKTGEVFTLMSSGTGAMEACVANVLSHGNKALVVVSGKFGERWAELCACFGIEPISICVENGKAVNPADIEAALKKTPGITAVFTTQCETSTGVVHDIKSIASIVKKYGALMVVDSITGIGVHPFMMDEWNIDVAITGSQKGCMMPPGLAFVCVNSSAWAVIEKAGLPRYYWDFRKMRKELKDKTTPFTPAVSLVMAMKTAMDMIKKEGIENVWKRHARLAHATREGAKALGLELFAGEYASNVLTAIKAPKGIDIDKIIKKLRDETGVTFTGGQDELKGMIVRIGHMGYVNDFDVIVAIAALEKGLYDAGYRFELGQGLSTVQSLLVSKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR14</accession>
    <name>A0A0M2UR14_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02798</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000264">
        <property type="protein sequence ID" value="KKO18528.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18528">
        <property type="protein sequence ID" value="KKO18528"/>
        <property type="gene ID" value="BROFUL_02798"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="320" mass="35642" checksum="E7C9C61C462C5320" modified="2015-11-11" version="1">MSKKRVSFFKNPALVSGMIGLAGVVLFLAGCAAPNAQKRIAAFSTALSIATTNTTEAFETVDQKFYRTKVALLVNNYDEKGFNPNTEMHFLTGQDLAVREQLFKGLQRYAQKLADIMSDAQLKEFDAETKAFGKSLQKLSENDAFKNINSGASKANIDAFVTAVDVVGRFFIDYKRERGVREIVADMKQPIENICNTLISDIGQPMDKTGAGGFGLRNQSWIQYDVMLKEHISFIDRNKDKFDPVTKAEAIAKLPAIVEEQSKADLTLKATQDTLKKLRMTHDELVKAFDKTCPTLENLIAELIDEGKRVGKFYKSLAKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR16</accession>
    <name>A0A0M2UR16_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Peptide chain release factor 1</fullName>
            <shortName evidence="5">RF-1</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">prfA</name>
        <name evidence="7" type="ORF">BROFUL_03034</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 5">Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="5">Methylated by PrmC. Methylation increases the termination efficiency of RF1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the prokaryotic/mitochondrial release factor family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18307.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18307">
        <property type="protein sequence ID" value="KKO18307"/>
        <property type="gene ID" value="BROFUL_03034"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3746"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016149">
        <property type="term" value="F:translation release factor activity, codon specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00093">
        <property type="entry name" value="Rel_fac_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005139">
        <property type="entry name" value="PCRF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000352">
        <property type="entry name" value="Pep_chain_release_fac_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045853">
        <property type="entry name" value="Pep_chain_release_fac_I_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004373">
        <property type="entry name" value="RF-1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03462">
        <property type="entry name" value="PCRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00472">
        <property type="entry name" value="RF-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00937">
        <property type="entry name" value="PCRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75620">
        <property type="entry name" value="SSF75620"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00019">
        <property type="entry name" value="prfA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5" id="KW-0488">Methylation</keyword>
    <keyword evidence="4 5" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PCRF" evidence="6">
        <location>
            <begin position="68"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="modified residue" description="N5-methylglutamine" evidence="5">
        <location>
            <position position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18307.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="363" mass="41524" checksum="1F75ED87FBD73951" modified="2015-11-11" version="1">MNDKLLKKLEKIYERHHELEKLLSDPEVIADAGRYTAYIKEHGSLSKMVNKYTQLTETLVRKKETEGFLAQEGEDKELAKMARDELGYLEKQEESLFEEIKGLFVTEDKISGKNVIAEIRAGTGGDEAAIFAADLFRMYTKYAENQGWKVELFDSSETDLGGFREVTFSIEGNNVYQKLRFESGTHRVQRVPRTEASGRVHTSTATVAILPEIEEVEIDINPNDILVDTFRASGPGGQKVNKTSSAVRITHVPSGLVVKCLDEKSQHKNRAKAMRILRSRLYELYEGQKRNERDQIRRDQIGTGDRSEKIRTYNYPQNRVTDHRINFSVHNLEQVMLGSLDEIVETLLTYYKEEQLKQLAASL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR59</accession>
    <name>A0A0M2UR59_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycosyl transferase family 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03217</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000293">
        <property type="protein sequence ID" value="KKO18115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18115">
        <property type="protein sequence ID" value="KKO18115"/>
        <property type="gene ID" value="BROFUL_03217"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="11"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="286" mass="32262" checksum="4332F297CF48F8DB" modified="2015-11-11" version="1">MSKSNLIVELVIPSYNRLNTLQDTLKQIRVLYPTLKVCVGLQGNVSDQDFQAQLKSDPYLRIEVLPHPSTTGTLNHCITSSQADIIVILDDDAVPCFGWLEAHIRAFDEQPDLVYTSGREVRLTKGRSAFSEWFRIMTEWFFGLFVGSDKKLNGRIVGWANKFGVILGNFNQPGICKINSPRGCNMAVRRESFLKIGGFHSGFTGNAYYFEADFGLRLAKEGYYGQYRGDAIVIHQEVPSGGSREAKRGQWFKDSLYNHKLLIHTLGPQAWIGSLPRLVKGFLTHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URC6</accession>
    <name>A0A0M2URC6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">Argininosuccinate lyase</fullName>
            <shortName evidence="5">ASAL</shortName>
            <ecNumber evidence="3 5">4.3.2.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Arginosuccinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">argH</name>
        <name evidence="8" type="ORF">BROFUL_02861</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>2-(N(omega)-L-arginino)succinate = fumarate + L-arginine</text>
            <dbReference type="Rhea" id="RHEA:24020"/>
            <dbReference type="ChEBI" id="CHEBI:29806"/>
            <dbReference type="ChEBI" id="CHEBI:32682"/>
            <dbReference type="ChEBI" id="CHEBI:57472"/>
            <dbReference type="EC" id="4.3.2.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 5">Amino-acid biosynthesis; L-arginine biosynthesis; L-arginine from L-ornithine and carbamoyl phosphate: step 3/3.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the lyase 1 family. Argininosuccinate lyase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.3.2.1" evidence="3 5"/>
    <dbReference type="EMBL" id="LAQJ01000270">
        <property type="protein sequence ID" value="KKO18427.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18427">
        <property type="protein sequence ID" value="KKO18427"/>
        <property type="gene ID" value="BROFUL_02861"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3544"/>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00114"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004056">
        <property type="term" value="F:argininosuccinate lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042450">
        <property type="term" value="P:arginine biosynthetic process via ornithine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01359">
        <property type="entry name" value="Argininosuccinate_lyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.275.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00006">
        <property type="entry name" value="Arg_succ_lyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029419">
        <property type="entry name" value="Arg_succ_lyase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009049">
        <property type="entry name" value="Argininosuccinate_lyase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024083">
        <property type="entry name" value="Fumarase/histidase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020557">
        <property type="entry name" value="Fumarate_lyase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000362">
        <property type="entry name" value="Fumarate_lyase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022761">
        <property type="entry name" value="Fumarate_lyase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008948">
        <property type="entry name" value="L-Aspartase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43814">
        <property type="entry name" value="PTHR43814"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14698">
        <property type="entry name" value="ASL_C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00206">
        <property type="entry name" value="Lyase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00149">
        <property type="entry name" value="FUMRATELYASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48557">
        <property type="entry name" value="SSF48557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00838">
        <property type="entry name" value="argH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00163">
        <property type="entry name" value="FUMARATE_LYASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="4 5" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 8" id="KW-0456">Lyase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lyase_1" evidence="6">
        <location>
            <begin position="9"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="domain" description="ASL_C2" evidence="7">
        <location>
            <begin position="366"/>
            <end position="433"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000985"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012338"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF14698"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18427.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="461" mass="52141" checksum="E67809B51FEBA5FE" modified="2015-11-11" version="1">MKQKKPWGGRFTKQTAASVETFTESVSFDWRLYQYDIEGSIAHANMLARCKLITEREKDVIVKGLKKILAEIEAGTFAFKESLEDVHMNIESALIARVGDAGKKLHTARSRNDQVALDLRLWTRNQAHEVTGLLKTLQREFVKKGKAFFGLIMPGFTHLQHAQPVLLSHYLLAYVEMFERDKERLQDCYVRLNRSPLGACALAGTTLPTDPVFTAKLLGFDGVCENSMDAVSDRDFCVEYAFCLSMIAMHLSRLAEEWIIWCNDEMKFIEISDAYCTGSSIMPQKKNPDVLELIRGKCGRVFGHLTSLLTLLKGLPLSYNRDMQEDKMAIFDAADTVRSTLSVLAELVANTNFHGERMMLACEKGFIDATALAEYLVKKGVPFRMAHEIVGKIVRECIRTQCRLMDLRLESFQAFSSVIEKDVFAVLGVENCIKNYKSYGSTSPGFVKKRIAYWEKKLSKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URD9</accession>
    <name>A0A0M2URD9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Trypco1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02665</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000245">
        <property type="protein sequence ID" value="KKO18628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18628">
        <property type="protein sequence ID" value="KKO18628"/>
        <property type="gene ID" value="BROFUL_02665"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045794">
        <property type="entry name" value="Trypco1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19493">
        <property type="entry name" value="Trypco1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Trypco1" evidence="1">
        <location>
            <begin position="10"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF19493"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="109" mass="12119" checksum="F059C856635001B3" modified="2015-11-11" version="1">MKKIIPFDLDGSPVYIEVEDVQETSAGFQRVARDNEEKGKSENRFTDAITKVKPAAEAVLKMFQEMNTPDEIGLDFGIKFNAKAGAVFASVDSEATFKVSLKWKNKKEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URN3</accession>
    <name>A0A0M2URN3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 14">Undecaprenyl-diphosphatase</fullName>
            <ecNumber evidence="4 14">3.6.1.27</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13 14">Bacitracin resistance protein</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12 14">Undecaprenyl pyrophosphate phosphatase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="primary">uppP</name>
        <name evidence="15" type="ORF">BROFUL_02560</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="14">Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 14">
            <text>di-trans,octa-cis-undecaprenyl diphosphate + H2O = di-trans,octa-cis-undecaprenyl phosphate + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:28094"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58405"/>
            <dbReference type="ChEBI" id="CHEBI:60392"/>
            <dbReference type="EC" id="3.6.1.27"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="14">Cell membrane</location>
            <topology evidence="14">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="14">Bacitracin is thought to be involved in the inhibition of peptidoglycan synthesis by sequestering undecaprenyl diphosphate, thereby reducing the pool of lipid carrier available.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 14">Belongs to the UppP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.27" evidence="4 14"/>
    <dbReference type="EMBL" id="LAQJ01000238">
        <property type="protein sequence ID" value="KKO18728.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18728">
        <property type="protein sequence ID" value="KKO18728"/>
        <property type="gene ID" value="BROFUL_02560"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3178"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050380">
        <property type="term" value="F:undecaprenyl-diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016311">
        <property type="term" value="P:dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046677">
        <property type="term" value="P:response to antibiotic"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01006">
        <property type="entry name" value="Undec_diphosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003824">
        <property type="entry name" value="UppP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30622">
        <property type="entry name" value="PTHR30622"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02673">
        <property type="entry name" value="BacA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00753">
        <property type="entry name" value="undec_PP_bacA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11 14" id="KW-0046">Antibiotic resistance</keyword>
    <keyword evidence="6 14" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="14" id="KW-0133">Cell shape</keyword>
    <keyword evidence="14" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="8 14" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10 14" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 14" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 14" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="44"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="71"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="95"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="172"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="204"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="238"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010621"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012374"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00021581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00032707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00032932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KKO18728.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="257" mass="28405" checksum="8D373ED8CF2C7B53" modified="2015-11-11" version="1">MTYPEALILAIIEGITEFLPISSTGHMVIASTFMGIGNNALTKNFVIVIQLGAILSVVVLYWRRFLASFRFYVKLVFAFLPAAVAGFFLEDYIDLLLANIWVVVASLILGGIILIFTDRWFRHAEGTKEQEVSWLQGFKIGCFQCIAMIPGVSRAAATIIGGMTVGLNRRTAAEFSFFLAVPTMLGASAKKMMDSYQTIQDHDLAILAFGSLVAFLVAMVAIRAFIGFLKQHGFKWFGYYRIVFGMAIALIALLMNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URT2</accession>
    <name>A0A0M2URT2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02949</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000278">
        <property type="protein sequence ID" value="KKO18350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18350">
        <property type="protein sequence ID" value="KKO18350"/>
        <property type="gene ID" value="BROFUL_02949"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="353"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="386"/>
            <end position="408"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="423" mass="46138" checksum="466DADCF39025AEE" modified="2015-11-11" version="1">MSENNHGKPGEISVVSKSAQALIDDALNAAFDTDPDTLQTFAEEKLQELDHVKATEDRDALKAALQSVWYFAQAVNVAFRGGDFVVAVDLLDRAASGFDQLGQTHARDISVGLGAYAQSVLDVRAMNITRAFDRLQAVEVYLNKAGTFSSKYKPLVDHMKPEMLLIASLLALQQLDLATGRTLIEEASKAANNVADVYYTEGRPERLAFRGYAHLYRAFYDFFRSISDSNQFEYDRIVANAAEVNANARSASDLLRQVEGMSEPVRIASVLATGVSQFLEAIPELARIMKKVFDSSFTTALPGLSTLRNKIHLAGETLAKAGPQATAMVRFTEQVANQVRNLERLARPTKKDFGVYSGLVTTAAFAALFLLTSWANAIFGLNLSSVRLITTCAVIGLIAGFGFGALRFRSLLFPAGQKDKDSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US22</accession>
    <name>A0A0M2US22_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Multicomponent efflux pump (Outer membrane subunit, RND family of ABC transporter)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">oprM</name>
        <name evidence="4" type="ORF">BROFUL_02854</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000269">
        <property type="protein sequence ID" value="KKO18445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18445">
        <property type="protein sequence ID" value="KKO18445"/>
        <property type="gene ID" value="BROFUL_02854"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003423">
        <property type="entry name" value="OMP_efflux"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010131">
        <property type="entry name" value="RND_efflux_OM_lipoprot_NodT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02321">
        <property type="entry name" value="OEP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01845">
        <property type="entry name" value="outer_NodT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0564">Palmitate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1134">Transmembrane beta strand</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="515"/>
            <end position="534"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="550" mass="60996" checksum="A10B85B095941A35" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USF8</accession>
    <name>A0A0M2USF8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02738</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000254">
        <property type="protein sequence ID" value="KKO18570.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18570">
        <property type="protein sequence ID" value="KKO18570"/>
        <property type="gene ID" value="BROFUL_02738"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18570.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="156" mass="16937" checksum="DF32C1B0A70CFB29" modified="2015-11-11" version="1">MDRTFIWISRAAMRKVNKVFAAIQIFIFFSLTLCGGGIPFNVSVKSGEYPCKDHACGCKSESDCKARCCCSPRGNASASQSDVKNPKDSFQSFISSLQCKSGSDAVTIMHVDLKFIPDNDGLISSITFLCFLTSDTVVYPGEPMVSPPEKPPRCSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USG3</accession>
    <name>A0A0M2USG3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02297</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO19003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19003">
        <property type="protein sequence ID" value="KKO19003"/>
        <property type="gene ID" value="BROFUL_02297"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19003.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="89" mass="9928" checksum="CC9F81435CA909AC" modified="2015-11-11" version="1">MRLKIFSLFLFVIFIAGCASLKANRDMGMKISKAENKIMVFPFRNPYYKGVELEGVGDTFALSFVSEIQSTGRTCELAEGDDFKANKSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USL7</accession>
    <name>A0A0M2USL7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02498</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18837">
        <property type="protein sequence ID" value="KKO18837"/>
        <property type="gene ID" value="BROFUL_02498"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="117"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="34"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="120"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="158" mass="17784" checksum="BF8885D83494C2AF" modified="2015-11-11" version="1">MVYVSARISGFLKIGAVLFCFMCLFFATYMASRYEHAKTEAEIQSHKRKELEEKYQELLQTHMVLIQEKDRLAHGAETLRAKNIGFEDWKHTIEEGTPARKTPANQQLMPEEKNVTAGIKEDSGTDQSSLSAVAEQTQMRESSLGTQTGNAMPARIAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USP2</accession>
    <name>A0A0M2USP2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putative cytochrome c</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_03294</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000301">
        <property type="protein sequence ID" value="KKO18016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18016">
        <property type="protein sequence ID" value="KKO18016"/>
        <property type="gene ID" value="BROFUL_03294"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13442">
        <property type="entry name" value="Cytochrome_CBB3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0349">Heme</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644050" evidence="5">
        <location>
            <begin position="21"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="6">
        <location>
            <begin position="28"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="119" mass="13466" checksum="4D627C124E8B04E7" modified="2015-11-11" version="1">MGKSIVAIFLFILCLMSSYGCNHKQTALTEKDGIWVVYDRECRKCHKINGKGSLVGRFIYKMPNFTNTKWQDNVSDSRLIISVANGKGKMPGYKGKLKDEEIVDLVKVCVRSFYPPPAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USR6</accession>
    <name>A0A0M2USR6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Flagellar hook protein FlgE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02402</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000230">
        <property type="protein sequence ID" value="KKO18887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18887">
        <property type="protein sequence ID" value="KKO18887"/>
        <property type="gene ID" value="BROFUL_02402"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0966">Cell projection</keyword>
    <keyword evidence="1" id="KW-0969">Cilium</keyword>
    <keyword evidence="1" id="KW-0282">Flagellum</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="114" mass="12155" checksum="6AF31DC15180C061" modified="2015-11-11" version="1">MSLSFSSSVFGIQAAFHIMSVSAHNTANINTDGYKKQRVSLSEGNHGGVMVNIRESSEPGPGYQHANGNISEASNVEISEEIPIQVGAKHLLSANVAALKISEEMQKSLLDIMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USS9</accession>
    <name>A0A0M2USS9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative peptidyl-prolyl cis-trans isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03255</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000298">
        <property type="protein sequence ID" value="KKO18056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18056">
        <property type="protein sequence ID" value="KKO18056"/>
        <property type="gene ID" value="BROFUL_03255"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046357">
        <property type="entry name" value="PPIase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000297">
        <property type="entry name" value="PPIase_PpiC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027304">
        <property type="entry name" value="Trigger_fact/SurA_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109998">
        <property type="entry name" value="SSF109998"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50198">
        <property type="entry name" value="PPIC_PPIASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0697">Rotamase</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644053" evidence="2">
        <location>
            <begin position="23"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="domain" description="PpiC" evidence="3">
        <location>
            <begin position="165"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="309" mass="34592" checksum="EDC496EC83D9D1A7" modified="2015-11-11" version="1">MNKLAVPLIGLLLICLHLPVFSAEKEPPKDIIATVNGKPVTAEMVSGRMKNVTSRDTETFSAMKQEITDQIITDILIDEFIDKQGIIVAPEEIEREIGQIKNTVSGGQKGDSQSLERILSAIGSDIDEFKKSLKHSIALERFFHKKLTDTALKKYFEENKGVFNGEAVKVSHILIDTRDMKSEKEHAQALERIKNIKKEIDLGGAFEEIARKYSDCPTAQDGGNLGFIQRKENFAKAFLDTAFSLRVGQVSGPVQTEYGYHLIKVTEKKEGAPVRFDDVREKVRLEALDAEILKLLNQLRQEATIILNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT02</accession>
    <name>A0A0M2UT02_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02525</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18745.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18745">
        <property type="protein sequence ID" value="KKO18745"/>
        <property type="gene ID" value="BROFUL_02525"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3136"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046429">
        <property type="term" value="F:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.413.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004588">
        <property type="entry name" value="IspG_bac-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045854">
        <property type="entry name" value="NO2/SO3_Rdtase_4Fe4S_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30454">
        <property type="entry name" value="PTHR30454"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04551">
        <property type="entry name" value="GcpE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56014">
        <property type="entry name" value="SSF56014"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18745.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="112" mass="12453" checksum="2918F6CE20D97840" modified="2015-11-11" version="1">MEIKAGYDILEALGLHRRHEAELISCPTCGRCEIDLVDIVEKVRQRLPGDKKHLQIAIMGCVVNGPGEAREVDIGIAGGKGFGFLFKKGEKVRKIPEDRMVDELLEEIAHMT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT42</accession>
    <name>A0A0M2UT42_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">DNA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_02508</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000235">
        <property type="protein sequence ID" value="KKO18785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18785">
        <property type="protein sequence ID" value="KKO18785"/>
        <property type="gene ID" value="BROFUL_02508"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037187">
        <property type="entry name" value="DnaK_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000962">
        <property type="entry name" value="Znf_DskA_TraR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020458">
        <property type="entry name" value="Znf_DskA_TraR_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01258">
        <property type="entry name" value="zf-dskA_traR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109635">
        <property type="entry name" value="SSF109635"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01102">
        <property type="entry name" value="ZF_DKSA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51128">
        <property type="entry name" value="ZF_DKSA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="DksA C4-type" evidence="5">
        <location>
            <begin position="41"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="dksA C4-type" evidence="4">
        <location>
            <begin position="84"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00510"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="159" mass="18161" checksum="C99EE0AC36DB18DE" modified="2015-11-11" version="1">MQKKELKQIENLLKSRKNILLKEFEKRAKKYRDAGSEKATDVVEIASSSSSEVLEFAVAEEGARELKQIEDALSRIKTGQYGVCEQCGKVIKKARLKAIPFATLCVSCKEEEEKACDDRAFRERAEEIADRPENVETDDMDTLHVGKKIMELEYDDNRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT61</accession>
    <name>A0A0M2UT61_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Radical SAM core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_02466</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18805">
        <property type="protein sequence ID" value="KKO18805"/>
        <property type="gene ID" value="BROFUL_02466"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3064"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022563">
        <property type="entry name" value="DUF3463"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017833">
        <property type="entry name" value="Hopanoid_synth-assoc_rSAM_HpnH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11946">
        <property type="entry name" value="DUF3463"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00397">
        <property type="entry name" value="adenosyl-hopene_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03470">
        <property type="entry name" value="HpnH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="5">
        <location>
            <begin position="24"/>
            <end position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="331" mass="37757" checksum="4036A8BA521F66DC" modified="2015-11-11" version="1">MRVSLSLSSSLTKYLLKNKILSRARFPLVLMLEVTHQCNLACEGCGRIHEYKETMREMLRTEECIQAVDECPAPVVTVTGGEPLIHPEIDKIINAIVNKKRHVYLCTNGILLPDAIKKLKPSKYFNINVHIDGLASTHNAIAGKGVFERAIHAIQAAKRAGFKVCTNTTIYKNTSEKEIDELFSFLEGLGVDGMLVSPGFSFEHNENEVFLCRNEIQERFGFIYGISKKYKILNSPLYLKFLKGERSLKCTPWGNPTRNYLGWKSPCYLITDTHYKTFDECMENTDWEKYQEGKDPRCENCMMHCGFEPTVVLEGGKRISDIIEMTKWSFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT68</accession>
    <name>A0A0M2UT68_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Two-component sensor kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02053</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19253.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19253">
        <property type="protein sequence ID" value="KKO19253"/>
        <property type="gene ID" value="BROFUL_02053"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="3"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19253.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="318" mass="35623" checksum="DBD86F633DA48EF7" modified="2015-11-11" version="1">MYSILIVSDDTSVTNLFKKSLNGDYVIHYAKTPDDALEILFNKDVDITFIDSLLHNEGATRLLEKFRQVNIDPTIVLIIPESQPAMSGDALRIGTYELLEKPLTNDAIEHASKRALEKQSLKKELGFMQSHIKNLQPAKQGLGMSEPAMNRQPNAGEINLKYKEVFQKFSKVLARVQDLGKLADLTVEAMSEIFGVGKVVFTLVYKKEGVSRPYRYLGLDESVAKKICFNNNHGIMLWLTKNHQILTKDVIEKKVACNTLSIREAIDIQREINLLQAHLCIPVLAYGSLSSVITLGNKITGKVFFDEDIELLSMLAGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT82</accession>
    <name>A0A0M2UT82_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02486</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18825.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18825">
        <property type="protein sequence ID" value="KKO18825"/>
        <property type="gene ID" value="BROFUL_02486"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18825.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="422" mass="49103" checksum="F032D8C5DCEFA3C3" modified="2015-11-11" version="1">MLLVGLIIPELIIEFANNFIIKCKAQVVYRNDGAAEDDKPQVKCGIAFLGMDMQDQSKLASLLHKAADRRSYVSHAMDLDALWKFFFKTGFIYPEKYAHIHANRVRFKELYKRLYMQNSSIARHFVYQDKGEVQGHLSMIRFYENAWLIHHHAASRSGCNKAGLNVLRQLGHYVNDFHSLYSTHLNYACCYFRPDNKFPQRVFGGVTEYINDKKGASIDPFAYVHYKKNLNCIGLPERWVLAETLPEDLLELEGFYECKSGGNMLDALDLKWDMIGNNDLSEEYHRLGFKRERRFFSLKRDGAFKAFIMVNISDIGLNMSDLTNCIHIIILDPEDLPDTILSSSVNMVSECYEQDKIPTLLYPISYAVDQSIPYDKTYNLWVLNLHYLDPYFRYLENLIHRNKQEDKVLSFPRVQHGNVEAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT87</accession>
    <name>A0A0M2UT87_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8 9">tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase</fullName>
            <ecNumber evidence="8 9">2.8.4.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">tRNA-i(6)A37 methylthiotransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">miaB</name>
        <name evidence="13" type="ORF">BROFUL_02238</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 9">Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>[sulfur carrier]-SH + AH2 + N(6)-dimethylallyladenosine(37) in tRNA + 2 S-adenosyl-L-methionine = 2-methylsulfanyl-N(6)-dimethylallyladenosine(37) in tRNA + 5'-deoxyadenosine + [sulfur carrier]-H + A + 2 H(+) + L-methionine + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:37067"/>
            <dbReference type="Rhea" id="RHEA-COMP:10375"/>
            <dbReference type="Rhea" id="RHEA-COMP:10376"/>
            <dbReference type="Rhea" id="RHEA-COMP:14737"/>
            <dbReference type="Rhea" id="RHEA-COMP:14739"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:29917"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:64428"/>
            <dbReference type="ChEBI" id="CHEBI:74415"/>
            <dbReference type="ChEBI" id="CHEBI:74417"/>
            <dbReference type="EC" id="2.8.4.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="9">Binds 2 [4Fe-4S] clusters. One cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the methylthiotransferase family. MiaB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.8.4.3" evidence="8 9"/>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19057">
        <property type="protein sequence ID" value="KKO19057"/>
        <property type="gene ID" value="BROFUL_02238"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2794"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035596">
        <property type="term" value="F:methylthiotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01864">
        <property type="entry name" value="tRNA_metthiotr_MiaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005839">
        <property type="entry name" value="Methylthiotransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020612">
        <property type="entry name" value="Methylthiotransferase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013848">
        <property type="entry name" value="Methylthiotransferase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038135">
        <property type="entry name" value="Methylthiotransferase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006463">
        <property type="entry name" value="MiaB_methiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002792">
        <property type="entry name" value="TRAM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01938">
        <property type="entry name" value="TRAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00919">
        <property type="entry name" value="UPF0004"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00273">
        <property type="entry name" value="(dimethylallyl)adenosine_tRNA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00089">
        <property type="entry name" value="TIGR00089"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51449">
        <property type="entry name" value="MTTASE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01278">
        <property type="entry name" value="MTTASE_RADICAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50926">
        <property type="entry name" value="TRAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 9" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 9" id="KW-0408">Iron</keyword>
    <keyword evidence="7 9" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 9" id="KW-0808">Transferase</keyword>
    <keyword evidence="9" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="MTTase N-terminal" evidence="11">
        <location>
            <begin position="15"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="12">
        <location>
            <begin position="154"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="domain" description="TRAM" evidence="10">
        <location>
            <begin position="387"/>
            <end position="450"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="24"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="60"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="94"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="168"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="172"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="175"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00033765"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO19057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="450" mass="50464" checksum="637EB97D9285A530" modified="2015-11-11" version="1">MITTSHNLNNDTLCKTVFFETFGCQMNKLDAELSLGLLQEDGYKIVDAVDEADVILFNTCSVRQHAEDKVYSHLGALKTLKKKRPEVIVGVLGCMAQKDGEAIFKRMPHVDLVCGTRMFSRLPELILNIRNHGSHVLAIDEDHIVNVKRAVAYRPNRYQAFVTVMRGCDNYCSYCIVPYVRGREISRTIADVKEEVQSLVSNGCKEITLLGQNINSYGKGLPGGVTLGDLLSELDDLAGLERIRFVTSHPADMSRDLIRTISRLGKVCEHLHMPAQSGSDQILARMRRGYSVSYYRDLISYARELIPHIMVASDFIVGFPGETDADFQETVRLMEEIRFQNCFIFKYSPRTGTKAAGLKDDVSDEIKRARNMKLLELQKGISLEENKKLIGRVVQVLAEGASKSDTNKLSGRTRQNHIVVFNGSLDFVGRLVNVLIHEATDLTLFGTLTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTA3</accession>
    <name>A0A0M2UTA3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Protein kinase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02438</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000232">
        <property type="protein sequence ID" value="KKO18845.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18845">
        <property type="protein sequence ID" value="KKO18845"/>
        <property type="gene ID" value="BROFUL_02438"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006468">
        <property type="term" value="P:protein phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008266">
        <property type="entry name" value="Tyr_kinase_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00109">
        <property type="entry name" value="PROTEIN_KINASE_TYR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="426"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="2">
        <location>
            <begin position="142"/>
            <end position="418"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18845.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="718" mass="82794" checksum="4BA2C6B314F19273" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTG3</accession>
    <name>A0A0M2UTG3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Antitoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02384</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Antitoxin component of a type II toxin-antitoxin (TA) system.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the phD/YefM antitoxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000228">
        <property type="protein sequence ID" value="KKO18905.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18905">
        <property type="protein sequence ID" value="KKO18905"/>
        <property type="gene ID" value="BROFUL_02384"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006442">
        <property type="entry name" value="Antitoxin_Phd/YefM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036165">
        <property type="entry name" value="YefM-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02604">
        <property type="entry name" value="PhdYeFM_antitox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143120">
        <property type="entry name" value="SSF143120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009981"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18905.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="88" mass="10132" checksum="4964887BCA0F799E" modified="2015-11-11" version="1">MKALMVSVAEGKKGFSRLIESAGKKKEEIIVTKRGKPIAVIVPYEEYQQSKRMEGYRKIIKARDSFLKAGLKSEEIFKESRKQLEKKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTH0</accession>
    <name>A0A0M2UTH0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02179</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000215">
        <property type="protein sequence ID" value="KKO19107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19107">
        <property type="protein sequence ID" value="KKO19107"/>
        <property type="gene ID" value="BROFUL_02179"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="29" mass="3271" checksum="0852EB1B931C58B3" modified="2015-11-11" version="1" fragment="single">FGITESLFCSLVVIVSESTLNRYENFSKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTR8</accession>
    <name>A0A0M2UTR8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative glycoside hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02085</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000209">
        <property type="protein sequence ID" value="KKO19207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19207">
        <property type="protein sequence ID" value="KKO19207"/>
        <property type="gene ID" value="BROFUL_02085"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2602"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008928">
        <property type="entry name" value="6-hairpin_glycosidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012341">
        <property type="entry name" value="6hp_glycosidase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011613">
        <property type="entry name" value="GH15-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00723">
        <property type="entry name" value="Glyco_hydro_15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48208">
        <property type="entry name" value="SSF48208"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="1">
        <location>
            <begin position="722"/>
            <end position="750"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19207.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="782" mass="88748" checksum="95C09410F0D5F687" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTS4</accession>
    <name>A0A0M2UTS4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Amidohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02304</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO19010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19010">
        <property type="protein sequence ID" value="KKO19010"/>
        <property type="gene ID" value="BROFUL_02304"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017439">
        <property type="entry name" value="Amidohydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036264">
        <property type="entry name" value="Bact_exopeptidase_dim_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011650">
        <property type="entry name" value="Peptidase_M20_dimer"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11014">
        <property type="entry name" value="PTHR11014"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07687">
        <property type="entry name" value="M20_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005962">
        <property type="entry name" value="Pept_M20D_amidohydro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55031">
        <property type="entry name" value="SSF55031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01891">
        <property type="entry name" value="amidohydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="M20_dimer" evidence="1">
        <location>
            <begin position="194"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19010.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="346" mass="38229" checksum="58FD8ADC186A7426" modified="2015-11-11" version="1">MTDKTLTQEILTHARGIHDYVVRMRRDFHKHPETGFGEIRTAGVIVEELKRLGLQVQTEIAKTGVLGTLPVDGASSTVAFRADMDALPITEENDLEFKSQNEGMSHACGHDANMAMLLGAAKLMVQLKDKLKRQVKFIFQPCEEQHPGGAKLMVEQGILKDINEIYGVHIDPNIPSGTFGLRAGATMAATDRIVITIIGKGGHASTPHLCVDPIVTAAEVILAIQTIVSRKVNPLSPCVVSLCQISGGTTFNVIPDKVRIIGTVRTLAKELRYKMPILIEEAIRGITSLNNASYQFEYLKGHPPLHNPQQQVDFVQDKIIELFGNKSVEQIDPRWEGRTFPITWKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTX9</accession>
    <name>A0A0M2UTX9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter ATP-binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02855</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000269">
        <property type="protein sequence ID" value="KKO18446.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18446">
        <property type="protein sequence ID" value="KKO18446"/>
        <property type="gene ID" value="BROFUL_02855"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="1">
        <location>
            <begin position="29"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18446.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="152" mass="15901" checksum="41885A8F9D6C38BB" modified="2015-11-11" version="1">MASPASQSTSAPVVSIKDVTHRYGSVVALDGISLDIPSGLMVGIIGPDGVGKSTLMAIVAGSKKLQEGNVTVLGGDIADARHRGAVCPQIAICPRDWARTSTWSSAFMRTLTLWQDSSDSQPRSVRPALKSCLMPPDSARFPNVPLASSRAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU49</accession>
    <name>A0A0M2UU49_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01936</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000198">
        <property type="protein sequence ID" value="KKO19352.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19352">
        <property type="protein sequence ID" value="KKO19352"/>
        <property type="gene ID" value="BROFUL_01936"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19352.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="104" mass="12364" checksum="CACE764F3077E36B" modified="2015-11-11" version="1" fragment="single">TFLVPSWERIQGWIKAGTERLKFLTLNLLLRHATRGKRLSFSYDGRVSDWLLYQKKAEKRKGFLSWKISFLISRSRKRRKNGVAVITRLAVWMPLHRMTQTAME</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUB2</accession>
    <name>A0A0M2UUB2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phosphodiesterase/nucleotide pyrophosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02112</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000211">
        <property type="protein sequence ID" value="KKO19185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19185">
        <property type="protein sequence ID" value="KKO19185"/>
        <property type="gene ID" value="BROFUL_02112"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2637"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002591">
        <property type="entry name" value="Phosphodiest/P_Trfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01663">
        <property type="entry name" value="Phosphodiest"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="SSF53649"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="462" mass="52840" checksum="A22BF64EC0FF76CC" modified="2015-11-11" version="1">MIIHKKKVFVLGLDSVPPELLFDRWLDQLPNIQRLIAHGRYGAMKSTIPAITCPAWMSMMTSANPGRLGIYGFRNRLRHDYEGLSFANSKSVHVDTVWNILSRLGKKVVVIGVPLTYPPQPVNGCMITCFLTPDTKGEYTYPPGLKAEVEAISQGYILDAAEFRSDNKESILKDIYAMTEKRFRLTRHFLRSKEWDFFMVVEMGPDRIHHAFWKYFDHDHPRHMPGSPYQNAILDYYKYLDEEIGETVKLFTDDTMTLIVSDHGAKKMMGGICINEWLIQNGYLKLVRYPAGSTPFNKTIVDWDNTRVWGEGGYYGRLFMNVRGREPKGVIAPQHYEHVRNELIKKLEDLRDEKGNTINTKVFKPEEIYTACNGIPPDLLVYYGDLFWRSIGNVGNRSIWASENDTGPDDANHSQYGIFIMQNGKEPGGVRLQGVTLYDIAPTILNYLGVRVPEDMEGKVIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUE3</accession>
    <name>A0A0M2UUE3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01836</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000190">
        <property type="protein sequence ID" value="KKO19457.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19457">
        <property type="protein sequence ID" value="KKO19457"/>
        <property type="gene ID" value="BROFUL_01836"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="178"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19457.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="337" mass="38335" checksum="830085F0795DE2CC" modified="2015-11-11" version="1">MVIKSCPSLLKILLLLFVVVYTLNKGTHYAFALENRDAENVSAIEVIAYVDKNEITIGDKIKFGIRVTYRDGVVPRFPELGQQIGMFTVKKTDVVEGPVKEKDGRFTVNCSYVLSSYEIGTQTIPSLKISYEGVHGAGEVVTNEISVDVRGVLQEGEISGDIREIVPPAGVPVNFRRLLPWIGVVFAVGLLSGTVFWFIWKRKKRERGQGREVIIRLPHEIAYELLEELLGEDLIAKGFVKEYYYRVTGIVRHYIENRFGLLAPECTTEEFLGELARTSKLQDSHKQLMREFLEQCDMVKYATYGPSRTEIQETYDAAKRFIDETRERLEEKEVVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUM6</accession>
    <name>A0A0M2UUM6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CheY-P phosphatase CheC</fullName>
            <ecNumber evidence="2">3.-.-.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">cheC</name>
        <name evidence="2" type="ORF">BROFUL_02575</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.-.-.-" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000239">
        <property type="protein sequence ID" value="KKO18696.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18696">
        <property type="protein sequence ID" value="KKO18696"/>
        <property type="gene ID" value="BROFUL_02575"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028976">
        <property type="entry name" value="CheC-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103039">
        <property type="entry name" value="SSF103039"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0145">Chemotaxis</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18696.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="201" mass="22607" checksum="456482FB579E5717" modified="2015-11-11" version="1">MNITQERMKVIEIMSRLSIDRASRALSKTLRTGAMISLSNVYIADLSETTERMNNDLREMTGVMVDFKGNIGCKLLFMLPVNGSFILTDLFLRQPTGTTKEYNEFTEGVIQELGNILASHISNVLVSDFDATLVPEPPHVHNDYAGVMFANLVMEQGMNDDKLLLMETKFEICKNEIECYLFLVPEATSFVKLLDNIGVKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUN7</accession>
    <name>A0A0M2UUN7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Caspase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01995</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19335.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19335">
        <property type="protein sequence ID" value="KKO19335"/>
        <property type="gene ID" value="BROFUL_01995"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2485"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029030">
        <property type="entry name" value="Caspase-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52129">
        <property type="entry name" value="SSF52129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19335.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="278" mass="30891" checksum="4C0D8141F27134C8" modified="2015-11-11" version="1">MPKGIALTTGLNAVSPAHYGGWSGELNACEADAKDMAEIARSKDYEVKTLLTKEATRKNVIDGIIKAAGTLTSGDIFMLSYSGHGGQLPDMNSDEDDAQDETWCLYDGEMVDDELYTLLGKFAKGVRVLVFSDSCHSGTVTKQAYYQSAMRAVGAKGIAPEVRYRFMPMEVAVRTYRDNKKFYDPILKDAKLKESRDAVNASVILISGCQDNQLSADGAFNGLFTANLLQVWNEGKFRKGYRAFRRAIVNRMPPDQTPNYFRVGETSRAFERQRPFTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUQ3</accession>
    <name>A0A0M2UUQ3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Patatin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01949</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000199">
        <property type="protein sequence ID" value="KKO19350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19350">
        <property type="protein sequence ID" value="KKO19350"/>
        <property type="gene ID" value="BROFUL_01949"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2427"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016042">
        <property type="term" value="P:lipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016035">
        <property type="entry name" value="Acyl_Trfase/lysoPLipase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002641">
        <property type="entry name" value="PNPLA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01734">
        <property type="entry name" value="Patatin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52151">
        <property type="entry name" value="SSF52151"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51635">
        <property type="entry name" value="PNPLA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="1 2" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="37"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="domain" description="PNPLA" evidence="4">
        <location>
            <begin position="89"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="GXSXG" evidence="2">
        <location>
            <begin position="132"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="DGA/G" evidence="2">
        <location>
            <begin position="321"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="2">
        <location>
            <position position="134"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="511" mass="57490" checksum="A7BBD1BB5F4BAC33" modified="2015-11-11" version="1">MNKTNLDRVNSPINNIVERRNIMNHWRTTLGKMSRPIRISASILIAIFLISGCMHYPVNKPLATVDPNSGYRGKFMGQPENSDEMMVFLAFSGGGTRAAAFSYGVLEELRNTAVTINGKKRMLLHEVDGISGVSGGSFTAAYYGLFGDRIFEDFEQKFLKRNVQGGLTRRFLIRPDNWVRLFSPFFARSDIAAEYYDKILFEKKTFQDMAARKGQSPMVFINATDMVTGIRVAFHQDAFDIICSDLSGYPVARAVTASSAVPVVLTPITLRNYSNDCGFKLPEEAERVRKEHDITSRSFHQVSNVDVYQDVAKHKYIHLVDGGVSDNLGLRAALDRILVMGSFWNTLKYLKLENTHKVVIIVVNAETEVSSQWSLFGRAPTISAMFGAYSSVSVTRYNYETVMLARESFRRWAEEVQKSRCGDGPISTEPGGCGDIKFYLVEVKFDALRDEAERHYFKGMPHRSNCLTSRSTTCVTPPIGYSQNQRNSSSFWRSYNKGVRLARTKASAQTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUS1</accession>
    <name>A0A0M2UUS1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Putative peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01733</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000180">
        <property type="protein sequence ID" value="KKO19562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19562">
        <property type="protein sequence ID" value="KKO19562"/>
        <property type="gene ID" value="BROFUL_01733"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2145"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000253">
        <property type="entry name" value="FHA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000209">
        <property type="entry name" value="Peptidase_S8/S53_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036852">
        <property type="entry name" value="Peptidase_S8/S53_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023828">
        <property type="entry name" value="Peptidase_S8_Ser-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015500">
        <property type="entry name" value="Peptidase_S8_subtilisin-rel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00082">
        <property type="entry name" value="Peptidase_S8"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00723">
        <property type="entry name" value="SUBTILISIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52743">
        <property type="entry name" value="SSF52743"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50006">
        <property type="entry name" value="FHA_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00138">
        <property type="entry name" value="SUBTILASE_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0720">Serine protease</keyword>
    <feature type="domain" description="FHA" evidence="5">
        <location>
            <begin position="379"/>
            <end position="449"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="674"/>
            <end position="697"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="966"/>
            <end position="1004"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="4">
        <location>
            <begin position="677"/>
            <end position="697"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="4">
        <location>
            <begin position="967"/>
            <end position="1004"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1287" mass="142155" checksum="39595584F583936E" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUX6</accession>
    <name>A0A0M2UUX6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03021</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18294.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18294">
        <property type="protein sequence ID" value="KKO18294"/>
        <property type="gene ID" value="BROFUL_03021"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="39"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="62"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="62"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18294.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="84" mass="9197" checksum="2B6AAFF8DC941820" modified="2015-11-11" version="1">MENDLAKVRIYLMVVVFFSSCFMGLMSGVSIPMLAMRSVVIVCIAGILSKLLIKYIVSVSNTASPKKSDQMNDSIPQDVNHGKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVC9</accession>
    <name>A0A0M2UVC9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF3880 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01503</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000155">
        <property type="protein sequence ID" value="KKO19777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19777">
        <property type="protein sequence ID" value="KKO19777"/>
        <property type="gene ID" value="BROFUL_01503"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024542">
        <property type="entry name" value="DUF3880"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12996">
        <property type="entry name" value="DUF3880"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF3880" evidence="1">
        <location>
            <begin position="107"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12996"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="301" mass="34876" checksum="5F99600DB32331AD" modified="2015-11-11" version="1">MLTIHVVGAQKANYPWGFENHVISALKKMGCKVISTDFRQERHNLAELLRQEADLVLVCKGEFISPDLIKSLPYPTALWYCEQIGTVEEADYESLLRRKELAYNATAFDFVFSHDMANIEIYKTIGCKRVHWLPSATVNTEVHKKLELPKKYDITFIGSKTSRRSTLLIALAKYFKVYTPNIWNSNELNQVFNESKVVLNIHLSDLLNMETRIGEVLGSGSFLLTEELSSNDLFTDGEHLVQWNRGNIEDMINKINYYLVHEDERERIAKTGHLFALEHHTFEKRMDQLLTFLGFDKYRHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVD1</accession>
    <name>A0A0M2UVD1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">S-adenosylmethionine:tRNA ribosyltransferase-isomerase</fullName>
            <ecNumber evidence="5">2.4.99.17</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Queuosine biosynthesis protein QueA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">queA</name>
        <name evidence="6" type="ORF">BROFUL_02339</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>7-aminomethyl-7-carbaguanosine(34) in tRNA + S-adenosyl-L-methionine = adenine + epoxyqueuosine(34) in tRNA + H(+) + L-methionine</text>
            <dbReference type="Rhea" id="RHEA:32155"/>
            <dbReference type="Rhea" id="RHEA-COMP:10342"/>
            <dbReference type="Rhea" id="RHEA-COMP:10346"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16708"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:82833"/>
            <dbReference type="ChEBI" id="CHEBI:82834"/>
            <dbReference type="EC" id="2.4.99.17"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">tRNA modification; tRNA-queuosine biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the QueA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.99.17" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18946.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18946">
        <property type="protein sequence ID" value="KKO18946"/>
        <property type="gene ID" value="BROFUL_02339"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2906"/>
    <dbReference type="UniPathway" id="UPA00392"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051075">
        <property type="term" value="F:S-adenosylmethionine:tRNA ribosyltransferase-isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008616">
        <property type="term" value="P:queuosine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1780.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00113">
        <property type="entry name" value="QueA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003699">
        <property type="entry name" value="QueA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042118">
        <property type="entry name" value="QueA_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042119">
        <property type="entry name" value="QueA_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036100">
        <property type="entry name" value="QueA_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30307">
        <property type="entry name" value="PTHR30307"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02547">
        <property type="entry name" value="Queuosine_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111337">
        <property type="entry name" value="SSF111337"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00113">
        <property type="entry name" value="queA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4 5" id="KW-0671">Queuosine biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 5 6" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022785"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18946.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="353" mass="40505" checksum="7980DDBC608E334C" modified="2015-11-11" version="1">MKPDSMCTKLSDYEYDLPKELIAQQPLENREDARLLILYRNSGKIEHRRFYEITEYLCPGDFLVLNNTKVIPALLSGKRVSGASLELLLTEERKESQWKALIRSNAKLKAGEEIYIADNILSAKLLKKGEDGSWLIQFDNGYPIKDLLLRTGKMPLPPYIKRTDNNGTCYSSDKERYQTVFAQKEGAIAAPTAGLHFSHSTLERIKKYGAEIGFVTLHVGMGTFLPIKTDDIRKHQMHKEYYECPREIMDKIKETKGHRHRVIAVGSTSCRVLESVAMHNETPQTSGWTNLFIYPPYHFRYVDVLLTNFHLPRTTLLALVCAFAGRENILNAYEIAKNKGYRFFSYGDCMMIM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVL8</accession>
    <name>A0A0M2UVL8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5 6">50S ribosomal protein L20</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rplT</name>
        <name evidence="7" type="ORF">BROFUL_01400</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 6">Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the bacterial ribosomal protein bL20 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000145">
        <property type="protein sequence ID" value="KKO19887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19887">
        <property type="protein sequence ID" value="KKO19887"/>
        <property type="gene ID" value="BROFUL_01400"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1726"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000027">
        <property type="term" value="P:ribosomal large subunit assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07026">
        <property type="entry name" value="Ribosomal_L20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1900.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00382">
        <property type="entry name" value="Ribosomal_L20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005813">
        <property type="entry name" value="Ribosomal_L20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035566">
        <property type="entry name" value="Ribosomal_protein_L20_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10986">
        <property type="entry name" value="PTHR10986"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00453">
        <property type="entry name" value="Ribosomal_L20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00062">
        <property type="entry name" value="RIBOSOMALL20"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74731">
        <property type="entry name" value="SSF74731"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01032">
        <property type="entry name" value="rplT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00937">
        <property type="entry name" value="RIBOSOMAL_L20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5 6" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007698"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="117" mass="13749" checksum="06DEA32D8BAC4364" modified="2015-11-11" version="1">MPRATKGCARKRSRKRLLNKTEGYWGGRGNLYRKAMETYIRAMVFSFRDRKARKRKFRELWISRISAAVRERGVSYSRFMQGLIKAKVDLNRKMLAEMAVNDKPAFDQLVEQVKAAM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVN1</accession>
    <name>A0A0M2UVN1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01655</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19620">
        <property type="protein sequence ID" value="KKO19620"/>
        <property type="gene ID" value="BROFUL_01655"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2043"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001440">
        <property type="entry name" value="TPR_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00515">
        <property type="entry name" value="TPR_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="16"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="14"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0802">TPR repeat</keyword>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="28"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="62"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="96"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="130"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="199"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="233"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="267"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="301"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="335"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="415"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="449"/>
            <end position="482"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="483"/>
            <end position="516"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="517"/>
            <end position="550"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="551"/>
            <end position="584"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="609" mass="68671" checksum="AA2A34EA80B8228A" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVR5</accession>
    <name>A0A0M2UVR5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01102</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20143.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20143">
        <property type="protein sequence ID" value="KKO20143"/>
        <property type="gene ID" value="BROFUL_01102"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025354">
        <property type="entry name" value="DUF4258"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14076">
        <property type="entry name" value="DUF4258"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20143.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="94" mass="10628" checksum="CC41B3182FDAD9A3" modified="2015-11-11" version="1">MSRQVIDKIRNAIRSGNYDLTYHAVEEMAEDKLVIYDVESTILSGKVIRKEKDDPRGIKFIINGVGTDQSTPIEVVGRLKETGTFLIITVYKIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVT2</accession>
    <name>A0A0M2UVT2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">ATP-dependent dethiobiotin synthetase BioD</fullName>
            <ecNumber evidence="5">6.3.3.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">DTB synthetase</fullName>
            <shortName evidence="5">DTBS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">Dethiobiotin synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">bioD</name>
        <name evidence="6" type="ORF">BROFUL_02192</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes a mechanistically unusual reaction, the ATP-dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA, also called 7,8-diammoniononanoate) to form a ureido ring.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>(7R,8S)-7,8-diammoniononanoate + ATP + CO2 = (4R,5S)-dethiobiotin + ADP + 3 H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:15805"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:149469"/>
            <dbReference type="ChEBI" id="CHEBI:149473"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.3.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="5">Cofactor biosynthesis; biotin biosynthesis; biotin from 7,8-diaminononanoate: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the dethiobiotin synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.3.3" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000218">
        <property type="protein sequence ID" value="KKO19096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19096">
        <property type="protein sequence ID" value="KKO19096"/>
        <property type="gene ID" value="BROFUL_02192"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2735"/>
    <dbReference type="UniPathway" id="UPA00078">
        <property type="reaction ID" value="UER00161"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004141">
        <property type="term" value="F:dethiobiotin synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009102">
        <property type="term" value="P:biotin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00336">
        <property type="entry name" value="BioD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004472">
        <property type="entry name" value="DTB_synth_BioD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43210">
        <property type="entry name" value="PTHR43210"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006755">
        <property type="entry name" value="DTB_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00347">
        <property type="entry name" value="bioD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5" id="KW-0093">Biotin biosynthesis</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" evidence="5">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="13"/>
            <end position="18"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="17"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="42"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="116"/>
            <end position="119"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="116"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="176"/>
            <end position="177"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00336"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="236" mass="25865" checksum="5D1AA8082AFD8FC3" modified="2015-11-11" version="1">MGRGYFITGTDTGVGKTIVAGGLAALYKDKGLDAGVMKPVATGCKRINNALVSEDAVFLKRAAEVDDEYALINPVSLEQPLAPTVAARLSNTKIDLEKIRMNYDSLCEKHDYLIIEGVGGLLVPIEAYYFVVDLASEMELPIIVVCRSNLGTINHTLLTVSYAREHGLDVKGIIMNDIKENGDDVVKKTSADEIQRLTGLPLLGIIPFDKRLDVTQFNKEALLNIFRDKIDKDIII</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVU3</accession>
    <name>A0A0M2UVU3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Transglut_core2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01026</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0162 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20178">
        <property type="protein sequence ID" value="KKO20178"/>
        <property type="gene ID" value="BROFUL_01026"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032698">
        <property type="entry name" value="SirB1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001440">
        <property type="entry name" value="TPR_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00515">
        <property type="entry name" value="TPR_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13369">
        <property type="entry name" value="Transglut_core2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="8"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0802">TPR repeat</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="21"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="domain" description="Transglut_core2" evidence="5">
        <location>
            <begin position="93"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="3">
        <location>
            <begin position="239"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="3">
        <location>
            <begin position="273"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="3">
        <location>
            <begin position="307"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="3">
        <location>
            <begin position="341"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="3">
        <location>
            <begin position="375"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="3">
        <location>
            <begin position="443"/>
            <end position="476"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="3">
        <location>
            <begin position="477"/>
            <end position="510"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="3">
        <location>
            <begin position="511"/>
            <end position="544"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF13369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="563" mass="63810" checksum="55BB325EF3C54BA9" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVV1</accession>
    <name>A0A0M2UVV1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Nitrate oxidoreductase subunit alpha</fullName>
            <ecNumber evidence="6">1.7.99.4</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">nxrA_2</name>
        <name evidence="6" type="ORF">BROFUL_02685</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.7.99.4" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000246">
        <property type="protein sequence ID" value="KKO18624.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18624">
        <property type="protein sequence ID" value="KKO18624"/>
        <property type="gene ID" value="BROFUL_02685"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3321"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008940">
        <property type="term" value="F:nitrate reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006656">
        <property type="entry name" value="Mopterin_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006963">
        <property type="entry name" value="Mopterin_OxRdtase_4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00384">
        <property type="entry name" value="Molybdopterin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="SSF50692"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51669">
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S Mo/W bis-MGD-type" evidence="5">
        <location>
            <begin position="60"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18624.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1149" mass="131764" checksum="A74BDBEC0C2A26C1" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW16</accession>
    <name>A0A0M2UW16_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="14">Cytochrome b/b6 domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">BROFUL_02646</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18694">
        <property type="protein sequence ID" value="KKO18694"/>
        <property type="gene ID" value="BROFUL_02646"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022904">
        <property type="term" value="P:respiratory electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00284">
        <property type="entry name" value="Cytochrome_b_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.810.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005798">
        <property type="entry name" value="Cyt_b/b6_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036150">
        <property type="entry name" value="Cyt_b/b6_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005797">
        <property type="entry name" value="Cyt_b/b6_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027387">
        <property type="entry name" value="Cytb/b6-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016174">
        <property type="entry name" value="Di-haem_cyt_TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00032">
        <property type="entry name" value="Cytochrom_B_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00034">
        <property type="entry name" value="Cytochrom_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00033">
        <property type="entry name" value="Cytochrome_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13442">
        <property type="entry name" value="Cytochrome_CBB3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81342">
        <property type="entry name" value="SSF81342"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81648">
        <property type="entry name" value="SSF81648"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51002">
        <property type="entry name" value="CYTB_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0249">Electron transport</keyword>
    <keyword evidence="3 10" id="KW-0349">Heme</keyword>
    <keyword evidence="8 10" id="KW-0408">Iron</keyword>
    <keyword evidence="9 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="35"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="89"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="117"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="185"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="239"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="293"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="327"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="domain" description="CYTB_NTER" evidence="12">
        <location>
            <begin position="5"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="13">
        <location>
            <begin position="391"/>
            <end position="561"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KKO18694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="595" mass="67055" checksum="C66BE65EBAF2FFCC" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW92</accession>
    <name>A0A0M2UW92_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Nucleotidyltransferase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02036</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19236">
        <property type="protein sequence ID" value="KKO19236"/>
        <property type="gene ID" value="BROFUL_02036"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041633">
        <property type="entry name" value="Polbeta"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18765">
        <property type="entry name" value="Polbeta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Polbeta" evidence="2">
        <location>
            <begin position="23"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18765"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="140" mass="16095" checksum="85AF0939842532FF" modified="2015-11-11" version="1">MTGSKERWSIEEIGKGLFPLFQDEGLRLVLLFGSAASGKMHKKSDIDLAFLFDKPADILTLTNRIIRLLHTDHVDVVDLKRASPLLRYTSVKHGMLLYEREPGMFHEFYSLAFRRYVDTKKLRDAQTKAIQQFLIARGLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWA8</accession>
    <name>A0A0M2UWA8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">Glutamine-dependent NAD(+) synthetase</fullName>
            <ecNumber evidence="5 6">6.3.5.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5 6">NAD(+) synthase [glutamine-hydrolyzing]</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">nadE</name>
        <name evidence="9" type="ORF">BROFUL_01187</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5 6">
            <text>ATP + deamido-NAD(+) + H2O + L-glutamine = AMP + diphosphate + H(+) + L-glutamate + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:24384"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.5.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 5 6">Cofactor biosynthesis; NAD(+) biosynthesis; NAD(+) from deamido-NAD(+) (L-Gln route): step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the NAD synthetase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 5 6">In the C-terminal section; belongs to the NAD synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.1" evidence="5 6"/>
    <dbReference type="EMBL" id="LAQJ01000126">
        <property type="protein sequence ID" value="KKO20112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20112">
        <property type="protein sequence ID" value="KKO20112"/>
        <property type="gene ID" value="BROFUL_01187"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1466"/>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00334"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004359">
        <property type="term" value="F:glutaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003952">
        <property type="term" value="F:NAD+ synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008795">
        <property type="term" value="F:NAD+ synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00553">
        <property type="entry name" value="NAD_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02090">
        <property type="entry name" value="NadE_glutamine_dep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003010">
        <property type="entry name" value="C-N_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036526">
        <property type="entry name" value="C-N_Hydrolase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014445">
        <property type="entry name" value="Gln-dep_NAD_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022310">
        <property type="entry name" value="NAD/GMP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003694">
        <property type="entry name" value="NAD_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23090">
        <property type="entry name" value="PTHR23090"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00795">
        <property type="entry name" value="CN_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02540">
        <property type="entry name" value="NAD_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006630">
        <property type="entry name" value="NADS_GAT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56317">
        <property type="entry name" value="SSF56317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00552">
        <property type="entry name" value="nadE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50263">
        <property type="entry name" value="CN_HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 6 7" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 6 7" id="KW-0520">NAD</keyword>
    <keyword evidence="3 5 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CN hydrolase" evidence="8">
        <location>
            <begin position="53"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; for glutaminase activity" evidence="5">
        <location>
            <position position="93"/>
        </location>
    </feature>
    <feature type="active site" description="For glutaminase activity" evidence="5">
        <location>
            <position position="164"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile; for glutaminase activity" evidence="5">
        <location>
            <position position="200"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="170"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="237"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="243"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="347"/>
            <end position="354"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="430"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="454"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="459"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="569"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR006630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003811"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="598" mass="66794" checksum="64921EC826E287B5" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWR8</accession>
    <name>A0A0M2UWR8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">4HBT domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00991</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 4-hydroxybenzoyl-CoA thioesterase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000118">
        <property type="protein sequence ID" value="KKO20282.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20282">
        <property type="protein sequence ID" value="KKO20282"/>
        <property type="gene ID" value="BROFUL_00991"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006684">
        <property type="entry name" value="YbgC/YbaW"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003230">
        <property type="entry name" value="YbgC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00051">
        <property type="entry name" value="TIGR00051"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4HBT" evidence="2">
        <location>
            <begin position="22"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20282.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="135" mass="15870" checksum="E418684008D9E438" modified="2015-11-11" version="1">MHNQTKIHEITTRVRYQETDQMGIVYYANFFVYFEMGRTEYLRNIGLPYAALEKEHIYFPVTEAHCRFRSPARYDDVLVIRTWISALKHATVEFHHTIIREGDNVLIAEGISKLACLNASRKPTPMPDKLKRLLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWT7</accession>
    <name>A0A0M2UWT7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00976</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000117">
        <property type="protein sequence ID" value="KKO20302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20302">
        <property type="protein sequence ID" value="KKO20302"/>
        <property type="gene ID" value="BROFUL_00976"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="9"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="149" mass="16860" checksum="338B6C162B4CEE93" modified="2015-11-11" version="1">MHGTKESITILLADDDSDDRFMAKDAFKEARLLNDLRFIENGEELIDYLHHRGKYADVKNSPRPGLILLDLNMPGKDGREALTEIKADPDLRRIPVVIVTTSKAEEDVVRTYELGSNSYITKPVSFEGLVAIIKTMANYWLEIVQLPTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWX9</accession>
    <name>A0A0M2UWX9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Adenosylhomocysteinase</fullName>
            <ecNumber evidence="4">3.3.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">S-adenosyl-L-homocysteine hydrolase</fullName>
            <shortName evidence="4">AdoHcyase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">ahcY</name>
        <name evidence="9" type="ORF">BROFUL_01815</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4 6">
            <text>H2O + S-adenosyl-L-homocysteine = adenosine + L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:21708"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16335"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:58199"/>
            <dbReference type="EC" id="3.3.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4 6">
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </cofactor>
        <text evidence="4 6">Binds 1 NAD(+) per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4 6">Amino-acid biosynthesis; L-homocysteine biosynthesis; L-homocysteine from S-adenosyl-L-homocysteine: step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 4 7">Belongs to the adenosylhomocysteinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.3.1.1" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000189">
        <property type="protein sequence ID" value="KKO19476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19476">
        <property type="protein sequence ID" value="KKO19476"/>
        <property type="gene ID" value="BROFUL_01815"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2256"/>
    <dbReference type="UniPathway" id="UPA00314">
        <property type="reaction ID" value="UER00076"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004013">
        <property type="term" value="F:adenosylhomocysteinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006730">
        <property type="term" value="P:one-carbon metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00401">
        <property type="entry name" value="SAHH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1480">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00563">
        <property type="entry name" value="AdoHcyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042172">
        <property type="entry name" value="Adenosylhomocyst_ase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000043">
        <property type="entry name" value="Adenosylhomocysteinase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015878">
        <property type="entry name" value="Ado_hCys_hydrolase_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020082">
        <property type="entry name" value="S-Ado-L-homoCys_hydrolase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23420">
        <property type="entry name" value="PTHR23420"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05221">
        <property type="entry name" value="AdoHcyase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00670">
        <property type="entry name" value="AdoHcyase_NAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001109">
        <property type="entry name" value="Ad_hcy_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00996">
        <property type="entry name" value="AdoHcyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00997">
        <property type="entry name" value="AdoHcyase_NAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00936">
        <property type="entry name" value="ahcY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00738">
        <property type="entry name" value="ADOHCYASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00739">
        <property type="entry name" value="ADOHCYASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 6 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 4 6" id="KW-0520">NAD</keyword>
    <keyword evidence="2 4 6" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AdoHcyase_NAD" evidence="8">
        <location>
            <begin position="185"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4 5">
        <location>
            <position position="53"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 5">
        <location>
            <position position="125"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 5">
        <location>
            <position position="150"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="151"/>
            <end position="153"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 5">
        <location>
            <position position="180"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 5">
        <location>
            <position position="184"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="185"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="214"/>
            <end position="219"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="237"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="272"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="293"/>
            <end position="295"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="341"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR001109-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000548"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004166"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00997"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="419" mass="45743" checksum="8E929C10720B9DAC" modified="2015-11-11" version="1">MNCDIKDVNLAVGGKKRIEWASNDMPVLAQVKERFEKEKPLKGMKMSACLHVTAETANLARTLKSGGADIVLCASNPLSTQDDVAASLTKDFGIPVFAIKGEDNKTYYQHITSVLDHKPTITMDDGADLVSAIHKDRKELIPQILGSMEETTTGVIRLKAMEKDGSLKMPVIAVNDADTKHLFDNRYGTGQSTIDGIIRATDCLLAGKVFVIAGYGWCGKGLAMRAKGMGANVVITEIDPIKSLEAAMDGFMVMPMSEAARIGDLFCTLTGNIHVIRKEHFEAMKNGAMVCNSGHFNVEIDIGALETTSTKINKSVRNFVDQYVLKNEKTVYLLGEGRLINLAAAEGHPACVMDMSFATQALATEYVVKNKGKLTPRVYEVPKEIDQWVASLKLKSMGIAIDTLTKEQEKYLASWEEGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWY6</accession>
    <name>A0A0M2UWY6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Lipid A biosynthesis acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_02303</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO19009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19009">
        <property type="protein sequence ID" value="KKO19009"/>
        <property type="gene ID" value="BROFUL_02303"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009247">
        <property type="term" value="P:glycolipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd07984">
        <property type="entry name" value="LPLAT_LABLAT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004960">
        <property type="entry name" value="LipA_acyltrans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30606">
        <property type="entry name" value="PTHR30606"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03279">
        <property type="entry name" value="Lip_A_acyltrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="2" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="238" mass="27092" checksum="F86F1B4F498DAC7D" modified="2015-11-11" version="1">MPTPVSYAISQHIADFSYVLYTSAGKNVKQNLRLVFPDLPDKNLSRLARRLFRNYSKYIVDCGRFTNFNKKALTEQIVCYEGKKNLDEVLHMNKGLILLTAHLGNWELGGMFFGSYGFKINVLTLPDENPEIDTIRSWHRSVYGVKTIPVGNTPFSMLEVARALDNKEIIAMLIDRHHAGLDSIATDFFHKPTLFPRGPFVLSRLTGAPIIVAFVVKEKDVYKGIIERHYRKASHGYT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX99</accession>
    <name>A0A0M2UX99_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 10">Adenine phosphoribosyltransferase</fullName>
            <shortName evidence="10">APRT</shortName>
            <ecNumber evidence="5 10">2.4.2.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">apt</name>
        <name evidence="12" type="ORF">BROFUL_01033</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>AMP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + adenine</text>
            <dbReference type="Rhea" id="RHEA:16609"/>
            <dbReference type="ChEBI" id="CHEBI:16708"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.4.2.7"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 10">Purine metabolism; AMP biosynthesis via salvage pathway; AMP from adenine: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 10">Belongs to the purine/pyrimidine phosphoribosyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.7" evidence="5 10"/>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20185">
        <property type="protein sequence ID" value="KKO20185"/>
        <property type="gene ID" value="BROFUL_01033"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1295"/>
    <dbReference type="UniPathway" id="UPA00588">
        <property type="reaction ID" value="UER00646"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003999">
        <property type="term" value="F:adenine phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006168">
        <property type="term" value="P:adenine salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044209">
        <property type="term" value="P:AMP salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006166">
        <property type="term" value="P:purine ribonucleoside salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00004">
        <property type="entry name" value="Aden_phosphoribosyltr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005764">
        <property type="entry name" value="Ade_phspho_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01090">
        <property type="entry name" value="apt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 10 12" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="9 10" id="KW-0660">Purine salvage</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 10 12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pribosyltran" evidence="11">
        <location>
            <begin position="27"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000868"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004659"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO20185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="171" mass="18707" checksum="2B224F91EE297E2F" modified="2015-11-11" version="1">MNELKNLVRDVPDFPKKGIIFKDIMPLLQNPKGLRKAVEIISGHYKNEKVDIVVGAEARGFILAPTIAFALGAGFTPIRKPGKLPYEKISMSYALEYGTDVLEIHKDGISKGQQVLMVDDLLATGGTMSACCKLVESLGGRIVGCAFLVELSFLDGKKNLTPYDIFSVIKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXB9</accession>
    <name>A0A0M2UXB9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative amidohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02181</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000215">
        <property type="protein sequence ID" value="KKO19109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19109">
        <property type="protein sequence ID" value="KKO19109"/>
        <property type="gene ID" value="BROFUL_02181"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01979">
        <property type="entry name" value="Amidohydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="1">
        <location>
            <begin position="13"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="178" mass="19364" checksum="FCC7CB518C332C18" modified="2015-11-11" version="1">MPPDWQPPGLTPIHYLKETGILENHPLLIHCNYITDAEISLIRSSGASVAFCPRSHRFFGHTNHPLPRLLGCGVNVGLGTDSLASNDTLSILDEMKFLFLHDAISPKTLISMATINGAKALGWELRVGRIREGFEADLCGIRLPDGDTRGVYGQLFDAGSKNIFTMISGVVCYQASSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXE9</accession>
    <name>A0A0M2UXE9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01671</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19636.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19636">
        <property type="protein sequence ID" value="KKO19636"/>
        <property type="gene ID" value="BROFUL_01671"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="100"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19636.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="127" mass="14359" checksum="CA1C7B5CAB84DBA2" modified="2015-11-11" version="1">MTIRIHMDNGSANSADEVKENEPDMPKLVLDIIPKNPQIPHIPDQMNKSAVEKHITQKGKIGVDERRIGDFRRIDYLHGNNPKVKEEKFELIAQGKLNEENEHVGKNNTSGNNGNRPDGFRSRIGII</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXF0</accession>
    <name>A0A0M2UXF0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF5615 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01096</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20245">
        <property type="protein sequence ID" value="KKO20245"/>
        <property type="gene ID" value="BROFUL_01096"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041049">
        <property type="entry name" value="DUF5615"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18480">
        <property type="entry name" value="DUF5615"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF5615" evidence="1">
        <location>
            <begin position="4"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18480"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="118" mass="13743" checksum="1D24ADC4D6DE24BA" modified="2015-11-11" version="1">MSIQFLLDENIPYALINLLESKGFTVMHLKKIDKGGIKNGEVYEFAEKNKMWIITRDADFQNIKKINNSNVAGVILTKLTLTKTEYLLKSLNRFLDKYNDKLSEKHLVIIEDYAVRVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXG0</accession>
    <name>A0A0M2UXG0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transketolase subunit A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02137</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19154">
        <property type="protein sequence ID" value="KKO19154"/>
        <property type="gene ID" value="BROFUL_02137"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2664"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd02012">
        <property type="entry name" value="TPP_TK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005474">
        <property type="entry name" value="Transketolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00456">
        <property type="entry name" value="Transketolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TRANSKETOLASE_1" evidence="1">
        <location>
            <begin position="22"/>
            <end position="277"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="291" mass="32303" checksum="780E80E67604ADD2" modified="2015-11-11" version="1">MQKNLYKELLYQKDIQMLENKARGIRATCIKMAHDGKEGHLNGALSCVDLLVGLYYTWLDVTPNDSHRKDRDRFIFSKGHACSSLYAVMADRGFFPKHWISSYAQNDSPLPSHPCIHALPILECSSGSLGHGLGMATGMSYGLRMDGIQARVVVLISDGECNEGSTWEAATFAVANRLDNLLLIVDNNGIQSVGRSDSLMGFTSLEEKYTAFGWTTRMINGNNIIEIVETLKEFPFEKGRPSAIIAKTVAGAGVSFMKNQVLWHYRVPSDEDLKKAMQELSEVPIYTESNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXG7</accession>
    <name>A0A0M2UXG7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ferrous iron transport protein A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">feoA</name>
        <name evidence="3" type="ORF">BROFUL_01010</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000119">
        <property type="protein sequence ID" value="KKO20265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20265">
        <property type="protein sequence ID" value="KKO20265"/>
        <property type="gene ID" value="BROFUL_01010"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1267"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046914">
        <property type="term" value="F:transition metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007167">
        <property type="entry name" value="Fe-transptr_FeoA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038157">
        <property type="entry name" value="FeoA_core_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008988">
        <property type="entry name" value="Transcriptional_repressor_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04023">
        <property type="entry name" value="FeoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00899">
        <property type="entry name" value="FeoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50037">
        <property type="entry name" value="SSF50037"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FeoA" evidence="2">
        <location>
            <begin position="3"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="78" mass="8554" checksum="62A9C586F33E9B33" modified="2015-11-11" version="1">MAITLTEMAVGEKGRVIGFEKVDKTYREKLMAMGLTKGVEFTVKRVAPLGDPVEINVRGFNLTLRKGEASALSVQKEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXI0</accession>
    <name>A0A0M2UXI0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Chain A of ATP binding cassette transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">abca_1</name>
        <name evidence="6" type="ORF">BROFUL_00490</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000066">
        <property type="protein sequence ID" value="KKO20788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20788">
        <property type="protein sequence ID" value="KKO20788"/>
        <property type="gene ID" value="BROFUL_00490"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.613"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03218">
        <property type="entry name" value="ABC_YhbG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030921">
        <property type="entry name" value="LPS_export_LptB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04406">
        <property type="entry name" value="LPS_export_lptB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="4"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="252"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="36"/>
            <end position="43"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="273" mass="30327" checksum="1A06B796CD5CB277" modified="2015-11-11" version="1">MNLLRAEGLTKSYGKRTVVNHVSFEVNDGEIVGILGQNGAGKSTSFNMIIGVVRPDSGCVIFQNEDITNFPIYQRARKGMGYLCQEPSVFQRLTVEENILAILETHRYAADEKYAQLSKLLNEFNLASLAKNKAFTLSGGERRRLEIARALASSPTMILLDEPFTGVDPIAVSEVQDILLKLKNKGIGLLITDHNVREALSITNHSYIISEGTVVAKGTTQEILSNPIARQSYLGDNFPTSEHRLADFKDIHSKKPKDADRKPIVRKDTDIRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXJ9</accession>
    <name>A0A0M2UXJ9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02103</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000210">
        <property type="protein sequence ID" value="KKO19194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19194">
        <property type="protein sequence ID" value="KKO19194"/>
        <property type="gene ID" value="BROFUL_02103"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2624"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013517">
        <property type="entry name" value="FG-GAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028994">
        <property type="entry name" value="Integrin_alpha_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022044">
        <property type="entry name" value="TcdB_toxin_mid/C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022045">
        <property type="entry name" value="TcdB_toxin_mid/N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13517">
        <property type="entry name" value="FG-GAP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12255">
        <property type="entry name" value="TcdB_toxin_midC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12256">
        <property type="entry name" value="TcdB_toxin_midN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69318">
        <property type="entry name" value="SSF69318"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="TcdB_toxin_midN" evidence="3">
        <location>
            <begin position="299"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="domain" description="TcdB_toxin_midC" evidence="2">
        <location>
            <begin position="529"/>
            <end position="575"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12255"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF12256"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="602" mass="67552" checksum="64452BFBF11CFAC0" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY49</accession>
    <name>A0A0M2UY49_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">L-threonine dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_00788</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 7">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the zinc-containing alcohol dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000100">
        <property type="protein sequence ID" value="KKO20485.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20485">
        <property type="protein sequence ID" value="KKO20485"/>
        <property type="gene ID" value="BROFUL_00788"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1000"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008743">
        <property type="term" value="F:L-threonine 3-dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006567">
        <property type="term" value="P:threonine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002328">
        <property type="entry name" value="ADH_Zn_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004627">
        <property type="entry name" value="L-Threonine_3-DHase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00692">
        <property type="entry name" value="tdh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00059">
        <property type="entry name" value="ADH_ZINC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="PKS_ER" evidence="8">
        <location>
            <begin position="1"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU361277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20485.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="330" mass="36441" checksum="A8095CF1DE3B3ADC" modified="2015-11-11" version="1">MEFSEVPTPKLGLRDVLIKVRIASICGTDVHIYDWTRWAQHRFTPPRIIGHEFVGDVTRVGEEVTQIKVGDRVSAESHLTCGHCYQCSNGNSEVCRNFKLLGVDHDGAFAEYLVLPEHVLWKNDSNIPDEWATIQEPFGNAVDTVLAEDVAAKTVLILGAGPIGLFATGIARACGASLVMVSDPNNYRLAISKQMGAHIAVNPRRQDVVQLAFDATQNNGVDVVLEFSGNNQALNQGLKVITPGGRISILGIYERRVNIDLNKDVIFKKIRIYGITGRKVFSTWYKTSRFLSSGLVDPGPVITHHFPLKDYEKGMKLMKDGKCGKVILNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY67</accession>
    <name>A0A0M2UY67_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Ethylbenzene dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_01361</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000141">
        <property type="protein sequence ID" value="KKO19911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19911">
        <property type="protein sequence ID" value="KKO19911"/>
        <property type="gene ID" value="BROFUL_01361"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019020">
        <property type="entry name" value="Cyt-c552/DMSO_Rdtase_haem-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09459">
        <property type="entry name" value="EB_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0249">Electron transport</keyword>
    <keyword evidence="2" id="KW-0349">Heme</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644086" evidence="6">
        <location>
            <begin position="23"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="domain" description="EB_dh" evidence="7">
        <location>
            <begin position="47"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF09459"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="291" mass="33187" checksum="F253F857BD75BC0C" modified="2015-11-11" version="1">MKHVFIMMCSLLFCFYSNTVWSGESTPLVWESSHTKTPPTVDGKMEKIWEQAKPFTVVVREAMGGNNPTEVVLRALHTDDTLYVLAQWPDDTKSDMRDPYIWNESKKDYDRPSKPDDQFSLEFPMSGEFNIRMLTLVHEYTADVWHWKAGRGNPVGWVDDKRHIISQKPMKNGVEYLMGGHGTVYIARLMDEGTPSYSLKSKPESFEDTIVDSFEQRQPSGSLADIQGKGIHDGKSWTLEMSRKFNTGHDDDAPIDPAKENICAIAILNDELYWDHSVSSVITLRFVNTAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY82</accession>
    <name>A0A0M2UY82_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Iron-sulfur cluster-binding oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_01849</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000191">
        <property type="protein sequence ID" value="KKO19434.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19434">
        <property type="protein sequence ID" value="KKO19434"/>
        <property type="gene ID" value="BROFUL_01849"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2303"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023885">
        <property type="entry name" value="4Fe4S-binding_SPASM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13186">
        <property type="entry name" value="SPASM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="5">
        <location>
            <begin position="5"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="domain" description="SPASM" evidence="6">
        <location>
            <begin position="229"/>
            <end position="291"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF13186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19434.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="326" mass="37675" checksum="28B40390D7E301E4" modified="2015-11-11" version="1">MEAAIITTYRCPNKCHMCNVWKYPTKREEEFRPSILEKLPQLDFANVTGGEPFVREDIDEIVHTLGKKAKRIVISTSGFFTEKILDIARKNKNIGIRISIEGLPAANDELRGVKDGFDHGLRTLLELQRMGIKDIGFGITVSDRNARDMIELYQLAKGMNVEFATAAVHNSFYFHKYDNQITKKDEAIACFEALIRDLLKGKRIKNWYRAYFNYGLINYIKGNKRLLPCEAGSENFFLDPWGEIRPCNGMEETCWFDSMGNLNKESFEEIWNGERARQVREKVKTCPKNCWMIGTAAPVMKKYFIKPTSWIIQNKIRMIMGKCPEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY89</accession>
    <name>A0A0M2UY89_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00752</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000095">
        <property type="protein sequence ID" value="KKO20530.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20530">
        <property type="protein sequence ID" value="KKO20530"/>
        <property type="gene ID" value="BROFUL_00752"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006158">
        <property type="entry name" value="Cobalamin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036724">
        <property type="entry name" value="Cobalamin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034466">
        <property type="entry name" value="Methyltransferase_Class_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02310">
        <property type="entry name" value="B12-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01123">
        <property type="entry name" value="methyltransferase_(Class_B)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52242">
        <property type="entry name" value="SSF52242"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="B12-binding" evidence="2">
        <location>
            <begin position="1"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="3">
        <location>
            <begin position="186"/>
            <end position="414"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20530.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="487" mass="55995" checksum="082F3A3445F3E7AD" modified="2015-11-11" version="1">MKILLMSMPDCAPHFNAKRWKAPNLAISSIAGNIDGHDVYIADLILRRERIADTVRELIAKYCPDVVGLTAMSFQFSTARRIASLIKTINNNIKTVLGGYHVTLMYREISESEEAAPFDFFIRGEGDLSFNELLEAISGKRIMESVPGLSFRKGDGFIHNSPRSLEDLAKIKIPDRSKRIWKGYQYYGFKLDIVESSRGCVMPCNFCSMDKMYGKTFRRYSVDRILSDISNAKQAGANFIIFSDDNFTLDIKGFESLCDAIADAGHNDIRYIIQASSTGIASSDTLAEKMARAGFRIVFLGIENVSEENLRRMKKGNIIEKTKLAVKRLHEHNIMIVGGMIIGNPNDKEEDIARNYEFFVDLQIDFFADQILTPYPKTGMRDELLNDGLITNTSDYSRYNCFWANIKTNYLGPEELQFLRWKYNKKYASYICTTPAFIKNYPLAYYYRQYFRRPFLRLKNRLFNNNFSEMELYKRDMAGAEAMNTFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYB0</accession>
    <name>A0A0M2UYB0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01838</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000190">
        <property type="protein sequence ID" value="KKO19459.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19459">
        <property type="protein sequence ID" value="KKO19459"/>
        <property type="gene ID" value="BROFUL_01838"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2286"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011703">
        <property type="entry name" value="ATPase_AAA-3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041628">
        <property type="entry name" value="ChlI/MoxR_AAA_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07726">
        <property type="entry name" value="AAA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17863">
        <property type="entry name" value="AAA_lid_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_3" evidence="1">
        <location>
            <begin position="49"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="domain" description="AAA_lid_2" evidence="2">
        <location>
            <begin position="255"/>
            <end position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19459.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="329" mass="37190" checksum="B9B8A8601651DD5D" modified="2015-11-11" version="1">MESDVKKITERVKQESDFVNTLMYEVGKVIVGQKYLLERLLIGILSNGHVLLEGVPGLAKTMSVMTLARAMQAGFQRIQFTPDLLPADLLGTLIYNPKNGDFTVRKGPIFTNIVLADEINRAPAKVQSALLEAMQDRQVTIGDQTFPLEDPFLVLATQNPIEHEGTYPLPEAQVDRFMLKLHITYPDKKEEREILERMALTRKDFKVTPVISPADILRLRAIVDEIYIDDKIKDYIIDIVCASRDPKAYNLNLEEFIEYGASPRATIYLTLAAKAHAFVKGRGFVTPQDVKSIGMDVLRHRVIITYEAEAEEMRAEDIVQKIFDTVEVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYD3</accession>
    <name>A0A0M2UYD3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01250</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO19981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19981">
        <property type="protein sequence ID" value="KKO19981"/>
        <property type="gene ID" value="BROFUL_01250"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012902">
        <property type="entry name" value="N_methyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045584">
        <property type="entry name" value="Pilin-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07963">
        <property type="entry name" value="N_methyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54523">
        <property type="entry name" value="SSF54523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02532">
        <property type="entry name" value="IV_pilin_GFxxxE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="197" mass="21629" checksum="7281D2AE90BC2C33" modified="2015-11-11" version="1">MSYQGKNNAQGFTLIELVVGLAICLILMGVAVGIFNTQRKSYIMQEQVIEMQQNVRIAIDMMVREIRMAGYDPSNSGFVGIGNHTATLLQILADHDGNGTTDAGNEDITYCYYNANDATYPREIKRQTGGGTFQPLAENIEECNFLYYDGNGIATTTASSIRQIRVTVTGRTAKADLNFGYRYGTLTSLLTPENLGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYH2</accession>
    <name>A0A0M2UYH2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative histidine kinase sensor domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00169</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000017">
        <property type="protein sequence ID" value="KKO21123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21123">
        <property type="protein sequence ID" value="KKO21123"/>
        <property type="gene ID" value="BROFUL_00169"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018771">
        <property type="entry name" value="PocR_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10114">
        <property type="entry name" value="PocR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PocR" evidence="1">
        <location>
            <begin position="29"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="198" mass="22421" checksum="79E7F85F9D501E73" modified="2015-11-11" version="1">MEPIRRLKIDFEKELISPIQLYLMSILNTCDVVYDVDGEVVGEVNASSYCKTLRFVSGRKDLCLTYSRELAKSAIQFKKPFEDVCPGGLTMLSLPLCLDEKTVIGAHCVTISNPLRSKFSVYDIAAQFQVDARILWDAVKKTPAIPRPILKIAHEQAILTTELMSKTMGRMHILKQSEAAMAKKYHEAEEIFKNHKDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYL7</accession>
    <name>A0A0M2UYL7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA-directed RNA polymerase sigma subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">sigA</name>
        <name evidence="2" type="ORF">BROFUL_00350</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000044">
        <property type="protein sequence ID" value="KKO20917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20917">
        <property type="protein sequence ID" value="KKO20917"/>
        <property type="gene ID" value="BROFUL_00350"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000943">
        <property type="entry name" value="RNA_pol_sigma70"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00715">
        <property type="entry name" value="SIGMA70_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <feature type="domain" description="RNA_pol_sigma70" evidence="1">
        <location>
            <begin position="84"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS00715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="184" mass="21240" checksum="03CC8A791F5057CC" modified="2015-11-11" version="1">MPLSFVIRAFYITKGGWMQEKKLMQMFEKDVGRIPILTNNEELAIARQSLMGDEAARNRLVESNMRFVIKVVFQYWSHGLPLMDMISEGCLGLIKAAKTFDPDKGFRFLTYAGNSIVQGVIKAIKDHKQCEHDSLDELAYGHESEMTQGRSLNRLNPRAMRRLFIARYAAYWIFSVRGKKRLLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYS2</accession>
    <name>A0A0M2UYS2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00302</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000035">
        <property type="protein sequence ID" value="KKO20967.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20967">
        <property type="protein sequence ID" value="KKO20967"/>
        <property type="gene ID" value="BROFUL_00302"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20967.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="56" mass="6549" checksum="96F2B4D2773943E3" modified="2015-11-11" version="1">MPVINAPLAPFLKEKYPHTPYQDFVVISVEQGDYEWVRRGQNVRNSIALNLRTETF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYV2</accession>
    <name>A0A0M2UYV2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Tnp_DDE_dom domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00017</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000004">
        <property type="protein sequence ID" value="KKO21253.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21253">
        <property type="protein sequence ID" value="KKO21253"/>
        <property type="gene ID" value="BROFUL_00017"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025668">
        <property type="entry name" value="Tnp_DDE_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13701">
        <property type="entry name" value="DDE_Tnp_1_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tnp_DDE_dom" evidence="1">
        <location>
            <begin position="9"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21253.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="184" mass="20507" checksum="4B08DEC0942D4522" modified="2015-11-11" version="1" fragment="single">KTIAQNEERRQPKIKTEMSGKGLTVHAGLLPVLTFMGKLLFRQRVQETVRKERGANARYQMVDGVQMVVVGLIAGATSMVQVVKVWSDEVLKKIPGWKEIPVDSTIGRIMKLVSPGDIVELTGIIHRFRGQVWKRAVRSGHTLRSALSDMWIDVDSTVDGVYGDQQGAEVGYNPKKKGQKAYHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYV3</accession>
    <name>A0A0M2UYV3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha,alpha-trehalose-phosphate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00461</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyltransferase 20 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000061">
        <property type="protein sequence ID" value="KKO20805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20805">
        <property type="protein sequence ID" value="KKO20805"/>
        <property type="gene ID" value="BROFUL_00461"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.576"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005992">
        <property type="term" value="P:trehalose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03788">
        <property type="entry name" value="GT20_TPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001830">
        <property type="entry name" value="Glyco_trans_20"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10788">
        <property type="entry name" value="PTHR10788"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00982">
        <property type="entry name" value="Glyco_transf_20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008799"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="490" mass="57036" checksum="392FA13CC2F5BF76" modified="2015-11-11" version="1">MIYTKESIKELISNKLKDYKLIVVSNREPYIHYYAGEEIKYIIPASGMVTALDPIIRAEGGTWIAHGSGDADKEVVDGKDCIAVPPDNPQYTLRRVWLTHEEEEQFYYGFSNEALWPLCHIVYVKPKFQETDWLAYKSVNQKFANVILEEVGNDKAFVFIQDYHFTLLPRMLKESRPDLLVAQFWHIPWPNREAFRICPWGQEILEGLLGNDLLGFHIQYHCNNFLDTIDRNLESKIDYSKFTATKGGKVTHVRPFPISIDFEELSVRARSVEVENEMMRVKKELGLKNQIIGVGLDRVDYTKGIPERFKAIDRFLERYPEYKGRFTFIQAGTISRIQIDDYRNYNDIIYDLMVEINHKYHSGRWTPLRLLKSHFNRINIQALYRLSDICIVSSLHDGMNLVAKEFIATRFDESGVLLLSRFTGAAEELTGSIQINPYATDTFAEAIKAAIEMPPDEKKKRMQRMREQVLEHNVYNWGQSIVNELIKLDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYX1</accession>
    <name>A0A0M2UYX1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Thiol:disulfide interchange protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">ccdA</name>
        <name evidence="4" type="synonym">dsbD</name>
        <name evidence="4" type="ORF">BROFUL_01637</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000170">
        <property type="protein sequence ID" value="KKO19659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19659">
        <property type="protein sequence ID" value="KKO19659"/>
        <property type="gene ID" value="BROFUL_01637"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2021"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017004">
        <property type="term" value="P:cytochrome complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1250">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003834">
        <property type="entry name" value="Cyt_c_assmbl_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028250">
        <property type="entry name" value="DsbDN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036929">
        <property type="entry name" value="DsbDN_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11412">
        <property type="entry name" value="DsbC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02683">
        <property type="entry name" value="DsbD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74863">
        <property type="entry name" value="SSF74863"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="194"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="239"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="279"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="322"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="355"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="398"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="421"/>
            <end position="442"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="454"/>
            <end position="473"/>
        </location>
    </feature>
    <feature type="domain" description="DsbC" evidence="3">
        <location>
            <begin position="48"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="domain" description="DsbD" evidence="2">
        <location>
            <begin position="201"/>
            <end position="411"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF11412"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="514" mass="56028" checksum="FD2C1E381FDA8817" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYY8</accession>
    <name>A0A0M2UYY8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01626</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
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            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
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        <property type="protein sequence ID" value="KKO19694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19694">
        <property type="protein sequence ID" value="KKO19694"/>
        <property type="gene ID" value="BROFUL_01626"/>
    </dbReference>
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        <property type="component" value="Unassembled WGS sequence"/>
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    <dbReference type="InterPro" id="IPR025641">
        <property type="entry name" value="DUF4340"/>
    </dbReference>
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        <property type="entry name" value="DUF4340"/>
        <property type="match status" value="5"/>
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    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4340" evidence="2">
        <location>
            <begin position="71"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4340" evidence="2">
        <location>
            <begin position="222"/>
            <end position="355"/>
        </location>
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    <feature type="domain" description="DUF4340" evidence="2">
        <location>
            <begin position="361"/>
            <end position="491"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4340" evidence="2">
        <location>
            <begin position="506"/>
            <end position="698"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4340" evidence="2">
        <location>
            <begin position="672"/>
            <end position="772"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="559"/>
            <end position="587"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="797"/>
            <end position="818"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="568"/>
            <end position="587"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14238"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="818" mass="93175" checksum="9E10D8FA8740C85A" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
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    <name>A0A0M2UZ03_9BACT</name>
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        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
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                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
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        <property type="protein sequence ID" value="KKO20196.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20196">
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        <property type="gene ID" value="BROFUL_01044"/>
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    <dbReference type="PATRIC" id="fig|380242.3.peg.1306"/>
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    </dbReference>
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    </dbReference>
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        <property type="term" value="P:tRNA wobble adenosine to inosine editing"/>
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    </dbReference>
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        <property type="entry name" value="APOBEC/CMP_deaminase_Zn-bd"/>
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        <property type="entry name" value="tRNA_aden_deaminase"/>
    </dbReference>
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        <property type="match status" value="1"/>
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    </dbReference>
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    </dbReference>
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    </dbReference>
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    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="CMP/dCMP-type deaminase" evidence="3">
        <location>
            <begin position="1"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20196.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="105" mass="11778" checksum="5A30235D0FFAEDE9" modified="2015-11-11" version="1">MRQAIIEAEKAVKKNEVPVGAVIVHEDRIIARAHNQREMLNDPTAHAEMIAITQAAASLENWRLRGTTLYVTLEPCAMCAGALVQSRYIPLFTGRWIKRRGRVSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ74</accession>
    <name>A0A0M2UZ74_9BACT</name>
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        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
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                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
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                <person name="Keltjens J.T."/>
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            </authorList>
            <dbReference type="PubMed" id="24267221"/>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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    </reference>
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        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
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    </dbReference>
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        <property type="gene ID" value="BROFUL_00330"/>
    </dbReference>
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            <begin position="19"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20940.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="39" mass="4346" checksum="8B801EAFF73DBF90" modified="2015-11-11" version="1">MLFIRNYTKGESQIKRNGNALPHALSHGNTDITMHGQHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ88</accession>
    <name>A0A0M2UZ88_9BACT</name>
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    <organism evidence="1 2">
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        <lineage>
            <taxon>Bacteria</taxon>
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            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000155">
        <property type="protein sequence ID" value="KKO19789.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19789">
        <property type="protein sequence ID" value="KKO19789"/>
        <property type="gene ID" value="BROFUL_01516"/>
    </dbReference>
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        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
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    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19789.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="72" mass="8587" checksum="56F122C0A0CAFE79" modified="2015-11-11" version="1">MSETDRRLWPFGPVLYKESIDESWKAEYQMEKFFEIKSDYFAVTQTGKYSKLVSRLTVLNTITQKLVEKKQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZC0</accession>
    <name>A0A0M2UZC0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH_33 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01467</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
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        <property type="protein sequence ID" value="KKO19824.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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    </dbReference>
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        <property type="component" value="Unassembled WGS sequence"/>
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        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
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    </dbReference>
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        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
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    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH_33" evidence="1">
        <location>
            <begin position="107"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19824.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="169" mass="19556" checksum="C1FBAE7517F6154C" modified="2015-11-11" version="1">MARITHTTEGEIRQARKLRDEAITAAELRKALSVLLMTEIGLDAEKTAEVLGTSRRTVFRNREEFRYQDDVPRNSWGGRRRFSLPIEDEREFLSTWEAEATTGGVLSVPPIHAALVKRLGHTTHMSTTYRLLARHGWRKVRPDTKHPKSNRSAQEELKKTFRNWWLPPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZF9</accession>
    <name>A0A0M2UZF9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00278</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
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            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000032">
        <property type="protein sequence ID" value="KKO20995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20995">
        <property type="protein sequence ID" value="KKO20995"/>
        <property type="gene ID" value="BROFUL_00278"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20995.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="41" mass="4894" checksum="663DFE4C6B989B8D" modified="2015-11-11" version="1">MQQSIAIGLDVIAVEFFLHFLRDEKFFKKSFYSNEHKVQAM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZG8</accession>
    <name>A0A0M2UZG8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4 5">Acylphosphatase</fullName>
            <ecNumber evidence="3 4 5">3.6.1.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_00254</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 4 5">
            <text>an acyl phosphate + H2O = a carboxylate + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:14965"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29067"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:59918"/>
            <dbReference type="EC" id="3.6.1.7"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the acylphosphatase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.7" evidence="3 4 5"/>
    <dbReference type="EMBL" id="LAQJ01000031">
        <property type="protein sequence ID" value="KKO21005.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21005">
        <property type="protein sequence ID" value="KKO21005"/>
        <property type="gene ID" value="BROFUL_00254"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.313"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003998">
        <property type="term" value="F:acylphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020456">
        <property type="entry name" value="Acylphosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001792">
        <property type="entry name" value="Acylphosphatase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036046">
        <property type="entry name" value="Acylphosphatase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017968">
        <property type="entry name" value="Acylphosphatase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47268">
        <property type="entry name" value="PTHR47268"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00708">
        <property type="entry name" value="Acylphosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00112">
        <property type="entry name" value="ACYLPHPHTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54975">
        <property type="entry name" value="SSF54975"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00150">
        <property type="entry name" value="ACYLPHOSPHATASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00151">
        <property type="entry name" value="ACYLPHOSPHATASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51160">
        <property type="entry name" value="ACYLPHOSPHATASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acylphosphatase-like" evidence="7">
        <location>
            <begin position="5"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="active site" evidence="4">
        <location>
            <position position="20"/>
        </location>
    </feature>
    <feature type="active site" evidence="4">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000744"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO21005.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="93" mass="10461" checksum="A9A7468139957CC1" modified="2015-11-11" version="1">MPMTRAHVYVRGRVQGVFFRASTKDRALTLGVTGWVKNCLDGSVEAVFEGKKDLVDKIVNWCRKGPSGARVEQIDVSWEDFTGEFDAFSVVYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZP1</accession>
    <name>A0A0M2UZP1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00193</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000022">
        <property type="protein sequence ID" value="KKO21075.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21075">
        <property type="protein sequence ID" value="KKO21075"/>
        <property type="gene ID" value="BROFUL_00193"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21075.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="25" mass="3024" checksum="B21EBC780470FC5C" modified="2015-11-11" version="1" fragment="single">MKRRNCIMCALTEKRISLKSEVKER</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZW9</accession>
    <name>A0A0M2UZW9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01230</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000134">
        <property type="protein sequence ID" value="KKO20054.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20054">
        <property type="protein sequence ID" value="KKO20054"/>
        <property type="gene ID" value="BROFUL_01230"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1523"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20054.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="97" mass="10361" checksum="337FBEED9D17F434" modified="2015-11-11" version="1">MVSQEFVNFVHIWARNVKTSQGGIQILTPPSHYRGSGSTGPHDGLVLDVPAQTHKDLSRLGIQTGEAIDISNAFGARVTVFLTVVTADGATVTMTRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0F8</accession>
    <name>A0A0M2V0F8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Recombination protein RecR</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">recR</name>
        <name evidence="9" type="ORF">BROFUL_01049</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the RecR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20199">
        <property type="protein sequence ID" value="KKO20199"/>
        <property type="gene ID" value="BROFUL_01049"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1311"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01025">
        <property type="entry name" value="TOPRIM_recR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00017">
        <property type="entry name" value="RecR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000093">
        <property type="entry name" value="DNA_Rcmb_RecR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023627">
        <property type="entry name" value="Rcmb_RecR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023628">
        <property type="entry name" value="Rcmb_RecR_C4-type_Zn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015967">
        <property type="entry name" value="Rcmb_RecR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006171">
        <property type="entry name" value="TOPRIM_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034137">
        <property type="entry name" value="TOPRIM_RecR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30446">
        <property type="entry name" value="PTHR30446"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02132">
        <property type="entry name" value="RecR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13662">
        <property type="entry name" value="Toprim_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00493">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111304">
        <property type="entry name" value="SSF111304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00615">
        <property type="entry name" value="recR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01300">
        <property type="entry name" value="RECR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50880">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5 7" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="6 7" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0862">Zinc</keyword>
    <keyword evidence="3 7" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="Toprim" evidence="8">
        <location>
            <begin position="81"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="C4-type" evidence="7">
        <location>
            <begin position="58"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="209" mass="23548" checksum="911D64AC100E3990" modified="2015-11-11" version="1">MNAYPPSVLKLISEFGKMPGIGQKTAERLAGYILKLPTEEAMQLAYAIRDVKKLVKTCSTCFNVSENDPCHICSDLSRDRSTICVVEQLADFLTIEKTGKYRGLYHVLQGHISPLEGIHPESLTIEKLLQRVNADHIKEVLLATNLNMEGDATALYIHKHLSPLGVKITRLARGLQREVILSMRMPRLSLMPSMAEMRWQAFKVNFNGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0M0</accession>
    <name>A0A0M2V0M0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01095</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20244">
        <property type="protein sequence ID" value="KKO20244"/>
        <property type="gene ID" value="BROFUL_01095"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1362"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007367">
        <property type="entry name" value="DUF433"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04255">
        <property type="entry name" value="DUF433"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="76" mass="8579" checksum="0D3C605356CFDCCF" modified="2015-11-11" version="1">MEEKEILQRISSDPNICHGKPCIKGTRIPVYLIVSLIAEREGIENIIQDYPSLTQDDVKAAVHYAAKLCEYEAYAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0Z3</accession>
    <name>A0A0M2V0Z3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF5615 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00905</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000109">
        <property type="protein sequence ID" value="KKO20384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20384">
        <property type="protein sequence ID" value="KKO20384"/>
        <property type="gene ID" value="BROFUL_00905"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041049">
        <property type="entry name" value="DUF5615"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18480">
        <property type="entry name" value="DUF5615"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF5615" evidence="1">
        <location>
            <begin position="2"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18480"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="112" mass="12875" checksum="0623AD8A6426409A" modified="2015-11-11" version="1">MNDLRKAGFDVSWIPEFGKDPGDDNIIKKALEEGSILVTADKDFGELVFLHKRPHPAIIRLVDIPARNQGTVLLRLVETHHFDIERHALITVEKYRVRVRILEKDDKNAEPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V107</accession>
    <name>A0A0M2V107_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4338 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00886</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000108">
        <property type="protein sequence ID" value="KKO20389.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20389">
        <property type="protein sequence ID" value="KKO20389"/>
        <property type="gene ID" value="BROFUL_00886"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1119"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025639">
        <property type="entry name" value="DUF4338"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14236">
        <property type="entry name" value="DUF4338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4338" evidence="1">
        <location>
            <begin position="69"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20389.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="388" mass="45798" checksum="D25DECC2D8E1BC1C" modified="2015-11-11" version="1">MGKSTEDSKLIIRGRKISNADIGEVRTLIELNGKQGRTHISRRLAEQWQWKQANGRLKERACRSILQELSRRGLIQLPVVKSSVPRKEARSLERVELDTTAIRGSIGELLPLRIEAVKGHESARMWRHVMRRYHYLGYQVLVGRNTRHLVYSRERLVAALGWQSAVDHLFCRDFMIGWDSQERRRYLDTVSNNSRFLIMPWVEVKHVASQVLSQSIRQLQSDWAEKYDSRLWFLETFVDPSRFRGTCYRAANWIKIGNTKGYRKEYKGFRYHGESKEVYFYVLEPRARQEIKQDKREPLLTREYLLSNRPEPLERERRNAVIVRAPEWSPEVEPGFELSQSDVGKLAEELEVYHRLFEEGFKRVEQKDLSMCYLQGLLSTLDRKSMEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V134</accession>
    <name>A0A0M2V134_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two component response regulator of OmpR/PhoB family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">phoB</name>
        <name evidence="5" type="ORF">BROFUL_00844</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000105">
        <property type="protein sequence ID" value="KKO20419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20419">
        <property type="protein sequence ID" value="KKO20419"/>
        <property type="gene ID" value="BROFUL_00844"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1065"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="3">
        <location>
            <begin position="2"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="4">
        <location>
            <begin position="124"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="2">
        <location>
            <begin position="124"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="225" mass="25857" checksum="75D7888B5BE5DA3B" modified="2015-11-11" version="1">MRILVVEDEKKLATYIKKGLEENHFATDVSNDGEEGRFMLNTNEYDLVILDILLPKKNGLEIVREARKNGKNMPVILLTAKDAAEDKARGLDLGADDYLVKPFSFIELIARIRALLRRGKVNCQIQLTVADLILDIAAHRLYRNGQPIDLTNKEFALLEFFMRNLNAVLTRTQIAEHVWDYNFDSLTNVIDVFVNRLRNKIDKGRIHKLIYTIKGVGYVMKDEKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V136</accession>
    <name>A0A0M2V136_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Deoxyhypusine synthase</fullName>
            <ecNumber evidence="2">2.5.1.46</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">dys-1</name>
        <name evidence="2" type="ORF">BROFUL_00419</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the deoxyhypusine synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.46" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000056">
        <property type="protein sequence ID" value="KKO20861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20861">
        <property type="protein sequence ID" value="KKO20861"/>
        <property type="gene ID" value="BROFUL_00419"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.524"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034038">
        <property type="term" value="F:deoxyhypusine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008612">
        <property type="term" value="P:peptidyl-lysine modification to peptidyl-hypusine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.910.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002773">
        <property type="entry name" value="Deoxyhypusine_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036982">
        <property type="entry name" value="Deoxyhypusine_synthase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11703">
        <property type="entry name" value="PTHR11703"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01916">
        <property type="entry name" value="DS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="362" mass="39902" checksum="267F51659F9223ED" modified="2015-11-11" version="1">MSMSKKSKQCQLQHKYLCKPRITPQVLKKGMKVKDLVDEYSRSGAFNAGRLAEACKLYSHMIDEGATIGLTLSGAMTPTGMGGVLIALLENGFVDFIISTGANLYHDLHFALDLPIHQGDFRVDDTKLYEAGIERIYDIFITDELLFKTDKFIQDVAKKNSLAQPVSTADFHYMLGKAVLSDTPSPQLSFVAQAARYDVPVFVSSPGDSSIGMNLSYLKIKDKGITIDTDLDVLQTTAIVFSGEKNGVVSIGGGSPKNFYMQTQPTLAQILDIHKGGHDYFIQITTDAPQWGGLSGATPTEAISWGKIRSEEVKNHVVVYSDATIAMPIIAGYVMSEKKSRKKKYLYKHLPAYMTELKNHVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V157</accession>
    <name>A0A0M2V157_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Hydrazine synthase subunit B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">hzsB</name>
        <name evidence="7" type="ORF">BROFUL_00383</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000049">
        <property type="protein sequence ID" value="KKO20886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20886">
        <property type="protein sequence ID" value="KKO20886"/>
        <property type="gene ID" value="BROFUL_00383"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00034">
        <property type="entry name" value="Cytochrom_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0349">Heme</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="42"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="6">
        <location>
            <begin position="231"/>
            <end position="375"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="375" mass="41493" checksum="2153E348529D4C4C" modified="2015-11-11" version="1">MAHSRADYREKSSKRVISGKNSEIGQFIKEEKRVMKSGIKKIGLIAALGIMGVATTGQLMAGTPQVVATIQTGPEWEPLPRAEPLTVPEVHYRVKHSPYKSELVRYGQFQFNDASWGLQGEYACASCHYERGQTTGLIWDLGDEGWGSWKNTKYIRGGRYLPPFRHEGFTGHPDEIVGATSSLDRVCGRDPGFVFRSENFSPLRLEALICYIRALEFTGSPFRNPDGSLTDAQKRGEKIFNDPNVGCVECHPGDASDPKALFSDAQTHDVGTGRVGVKGFRSTPGKVFNLKALEAGEDPYGEESDTPIIGLDLVKEFDTPTLRDIYASGTYFHDGGARTLIDTINNTVNEKDMHGRTSHLTQQEMQDLVEFLKAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1U9</accession>
    <name>A0A0M2V1U9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00582</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000081">
        <property type="protein sequence ID" value="KKO20694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20694">
        <property type="protein sequence ID" value="KKO20694"/>
        <property type="gene ID" value="BROFUL_00582"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="103" mass="12024" checksum="8080BEEBC8918100" modified="2015-11-11" version="1">MEEKVYSFLVASDQWGFLVEHQVVERQTEESSMTFQNLRHRRSAVESDINRLEHHGLDRCLDKGLHVFKRYCALGVLAANLHELGNVPQEKARKRHEKLRKAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V203</accession>
    <name>A0A0M2V203_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00560</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000077">
        <property type="protein sequence ID" value="KKO20724.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20724">
        <property type="protein sequence ID" value="KKO20724"/>
        <property type="gene ID" value="BROFUL_00560"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20724.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="94" mass="10392" checksum="3DD6D1E2891AFCEE" modified="2015-11-11" version="1">MCEITSVRVDSGFSCFVCLLGDGGAVFSDFPAGLELVGSKTLNSVLKDALHFVIIRWYHRLISKDEESSLPWQNIGVGKYILLTIRSVFVIIKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V226</accession>
    <name>A0A0M2V226_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PDZ domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00531</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000073">
        <property type="protein sequence ID" value="KKO20749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20749">
        <property type="protein sequence ID" value="KKO20749"/>
        <property type="gene ID" value="BROFUL_00531"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd14727">
        <property type="entry name" value="ChanN-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007314">
        <property type="entry name" value="Cofac_haem-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04187">
        <property type="entry name" value="Cofac_haem_bdg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13180">
        <property type="entry name" value="PDZ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00228">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="SSF50156"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50106">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="domain" description="PDZ" evidence="2">
        <location>
            <begin position="329"/>
            <end position="398"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="413" mass="47776" checksum="8173E699BDD11100" modified="2015-11-11" version="1">MNVLRNFTTYLLPKGFGSVVFFLLSSLIFLPMNAFSENDRLKSFPEQVAIDDIIHIPTGEKVQFVHLENFLDCARIIYVGEIHANKASHQVQLKILKACYEKFGNNLTVGMEMFTRPYQPFLDQWTAGEIDEQKFLEETHWDKEWGYDYLLYKDIFDFVREKKIPLIALNAPKELVRMVSKKGLKDLTEEERKLLPEIDTSGFFHRVYLERATREHRDHAAALERYNDVQCLWEEYMAQTIANYLSSWEGKDKKMLVFAGNGHIIYDFGIPARVFRRNFLPYHTIYPAEFQGNKPTSDQNLFLSDIPLEPADFVWVIPPQAAMEKRIYLGVQIQKNTDHTLIIEAITPESPAQKAGFQIGDTILSVDGKTVKSVMELVHYLQTKRFGETCTVVIERSGNSISCEVTLFEIKHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V228</accession>
    <name>A0A0M2V228_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNase_H_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00513</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000071">
        <property type="protein sequence ID" value="KKO20754.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20754">
        <property type="protein sequence ID" value="KKO20754"/>
        <property type="gene ID" value="BROFUL_00513"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019993">
        <property type="entry name" value="RecB_nuclease_TM0106_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038720">
        <property type="entry name" value="YprB_RNase_H-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13482">
        <property type="entry name" value="RNase_H_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03491">
        <property type="entry name" value="TIGR03491"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase_H_2" evidence="1">
        <location>
            <begin position="5"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13482"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20754.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="342" mass="39816" checksum="DDD2CD4F6668DF29" modified="2015-11-11" version="1">MRRGNRSYHSFWADTHEDEQRIWSEALEKINEHPEAPIYHYGSYEPRAIGWLAQKYQANCEVIKNRLVNLNASIYGKVYFPTRSNNLKELGKLIGASWTAPDASGLQSLAWRYLWNDTGESQYKKMLITYNREDCEALWLLAEELSKIIASANAHMSIDFADRPKQYASELGNKIHEEFQSIIRYAHANYGNKRVSIRQQQCPTETKGKKRGGVKGHQAYQRIMPSKAGTVIKVAPKRTCPKHKRFMLEKSEEVAKKFIVNLRFMKNGFRETATKYVGAQGYCQKCNKHYSPPKIEKLGNRLFGHAFQTWVIYQRVVLRLPYRIIIQEMEDIFSERVSRVLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V236</accession>
    <name>A0A0M2V236_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PDZ domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00088</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000009">
        <property type="protein sequence ID" value="KKO21181.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21181">
        <property type="protein sequence ID" value="KKO21181"/>
        <property type="gene ID" value="BROFUL_00088"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041489">
        <property type="entry name" value="PDZ_6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17820">
        <property type="entry name" value="PDZ_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00228">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="SSF50156"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50106">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PDZ" evidence="2">
        <location>
            <begin position="50"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="181"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="195"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO21181.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="868" mass="94071" checksum="BC1261F4D337CA37" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2A5</accession>
    <name>A0A0M2V2A5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Type-4 uracil-DNA glycosylase</fullName>
            <ecNumber evidence="3">3.2.2.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_00009</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Hydrolyzes single-stranded DNA or mismatched double-stranded DNA and polynucleotides, releasing free uracil.</text>
            <dbReference type="EC" id="3.2.2.27"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the uracil-DNA glycosylase (UDG) superfamily. Type 4 (UDGa) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.2.27" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000003">
        <property type="protein sequence ID" value="KKO21256.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21256">
        <property type="protein sequence ID" value="KKO21256"/>
        <property type="gene ID" value="BROFUL_00009"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.16"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004844">
        <property type="term" value="F:uracil DNA N-glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005273">
        <property type="entry name" value="Ura-DNA_glyco_family4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005122">
        <property type="entry name" value="Uracil-DNA_glycosylase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036895">
        <property type="entry name" value="Uracil-DNA_glycosylase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03167">
        <property type="entry name" value="UDG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00986">
        <property type="entry name" value="UDG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52141">
        <property type="entry name" value="SSF52141"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00758">
        <property type="entry name" value="UDG_fam4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="7" id="KW-0408">Iron</keyword>
    <keyword evidence="8" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UDG" evidence="10">
        <location>
            <begin position="101"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="1"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="9">
        <location>
            <begin position="51"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001400"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006521"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012030"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00019403"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO21256.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="270" mass="29496" checksum="A40A4F2EE8C170B7" modified="2015-11-11" version="1">MEKGWGIDTITLSRPNEPSEPQPRHPSPEKQPLKNPDSGGPVCKLAEGTDGYLSRNTSRQRSTQTSATGGEGQVQNLEALRNEMQACHQCPLGKTRTNLVFGAGNPRATLMFVGEAPGRDEDLQGEPFVGRAGQLLTKIIEAIGLKRSDVYIANVLKCRPPGNRNPLPDEIALCIPYLLKQIGIIQPKVLCALGTFAAQTLLNTRAPVGTLRGRFHDYKGTPMMVTFHPAYLLRNPNDKAKVWEDMKKVRDLLNKLSGKSSDGEAPVSHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2Y2</accession>
    <name>A0A0M2V2Y2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00229</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000028">
        <property type="protein sequence ID" value="KKO21044.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21044">
        <property type="protein sequence ID" value="KKO21044"/>
        <property type="gene ID" value="BROFUL_00229"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="14"/>
            <end position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21044.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="266" mass="29554" checksum="38C8416B96FCDCE2" modified="2015-11-11" version="1">MSTKYFLFKHGEKFILGISVCYLLYTIICAFITARLKIPDIDSKLLSLSTVIDRKLKTEVSPSISADRKDAAELAFRLTTPPPASLLLRAHLFGNLTSGGSDMRITTKDLLKKSEAQPSSDSEGVSQETTEFILKGGTADMALIQVRKFYKDQWWAESFTVGKGEIIGEGKKIGAEIVDFHTYCRLTEITPLAPKPFFTKKATVLRDEKDHFLGISMTEEKHTVAASQIAFENEKGQSYHVWIGELVKLGTETVTVCPVANTRSTH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V3J0</accession>
    <name>A0A0M2V3J0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Glutamate dehydrogenase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_00024</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3 7">Belongs to the Glu/Leu/Phe/Val dehydrogenases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000006">
        <property type="protein sequence ID" value="KKO21229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21229">
        <property type="protein sequence ID" value="KKO21229"/>
        <property type="gene ID" value="BROFUL_00024"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.34"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004353">
        <property type="term" value="F:glutamate dehydrogenase [NAD(P)+] activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006520">
        <property type="term" value="P:cellular amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01076">
        <property type="entry name" value="NAD_bind_1_Glu_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046346">
        <property type="entry name" value="Aminiacid_DH-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006095">
        <property type="entry name" value="Glu/Leu/Phe/Val_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033524">
        <property type="entry name" value="Glu/Leu/Phe/Val_DH_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006096">
        <property type="entry name" value="Glu/Leu/Phe/Val_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006097">
        <property type="entry name" value="Glu/Leu/Phe/Val_DH_dimer_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014362">
        <property type="entry name" value="Glu_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033922">
        <property type="entry name" value="NAD_bind_Glu_DH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00208">
        <property type="entry name" value="ELFV_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02812">
        <property type="entry name" value="ELFV_dehydrog_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000185">
        <property type="entry name" value="Glu_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00082">
        <property type="entry name" value="GLFDHDRGNASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00839">
        <property type="entry name" value="ELFV_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53223">
        <property type="entry name" value="SSF53223"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00074">
        <property type="entry name" value="GLFV_DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 3 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ELFV_dehydrog" evidence="8">
        <location>
            <begin position="186"/>
            <end position="416"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="4">
        <location>
            <position position="109"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="73"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="97"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="193"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="224"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="352"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Important for catalysis" evidence="6">
        <location>
            <position position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR000185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000185-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000185-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000185-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO21229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="419" mass="46068" checksum="CC3B95084199DCC2" modified="2015-11-11" version="1">MRQNAATPNAWETALAQFDQVAKLMSLSVDISQVLRNFDRALTVSVPIRMDDGSLKVFTGFRVQHNAARGPYKGGIRYHPELTFDDLKALAMEMTWKCSLAGVPFGGAKGGIVCNPKTLSKGELERLTRRYTYAIMPIIGIEKDIPAPDVNTNEQIMAWMMDTYSINNGYCTPGIVTGKPINVGGSLGRTDATGLGIAHTIANATRYKKMNPKNLKVVIQGYGNVGSAVGKFLSEMGCRIVAVSSSKGGIYNPKGLDHHALLKHYQESGSFDRFPRAEGITNESLLELPCDVLVPAAMSNQITKENADRIRAKLIVEGANGPTTIEADRRLNERKIPVIPDILANAGGVIVSYFEWVQDVQCYFWCEHEVNEKLKNILDRTYEAVHAFAQEKKLSMRTAAMSIAIKRIADAISVRGLYP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UP00</accession>
    <name>A0A0M2UP00_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">CRISPR-associated protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_03444</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000315">
        <property type="protein sequence ID" value="KKO17868.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17868">
        <property type="protein sequence ID" value="KKO17868"/>
        <property type="gene ID" value="BROFUL_03444"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043571">
        <property type="term" value="P:maintenance of CRISPR repeat elements"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002729">
        <property type="entry name" value="CRISPR-assoc_Cas1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042206">
        <property type="entry name" value="CRISPR-assoc_Cas1_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01867">
        <property type="entry name" value="Cas_Cas1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00287">
        <property type="entry name" value="cas1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO17868.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="114" mass="13201" checksum="9DEDDA357F0ABDD5" modified="2015-11-11" version="1">MNPHISFLHAFQPNKPTLVYDLVEEYRQPLVDRPVFSLLTRGKKGSDLKLDQQTGMLSKETREKVVKAVLKRFSDLISFRGEKVKYEDVIPLQARKVVAFLEEKDSYLPFIAGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UP46</accession>
    <name>A0A0M2UP46_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Uma2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03419</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000312">
        <property type="protein sequence ID" value="KKO17908.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17908">
        <property type="protein sequence ID" value="KKO17908"/>
        <property type="gene ID" value="BROFUL_03419"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd06260">
        <property type="entry name" value="DUF820"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1570.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012296">
        <property type="entry name" value="Nuclease_put_TT1808"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008538">
        <property type="entry name" value="Uma2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05685">
        <property type="entry name" value="Uma2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Uma2" evidence="1">
        <location>
            <begin position="8"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO17908.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="118" mass="13569" checksum="A18CA08640B407FF" modified="2015-11-11" version="1">MPPIDVVFDEDEVFQPDIVFIKSENQDIIHKTAIHGIPDLIIGIVSPASTYYDTVEKKEIYRKYGVKECWLIFPDERVIGILTLESDEYLEFCKSKKEGLVKSKIVEGLEINSQDVFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPD8</accession>
    <name>A0A0M2UPD8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Very short patch repair endonuclease</fullName>
            <ecNumber evidence="6">3.1.-.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">vsr</name>
        <name evidence="6" type="ORF">BROFUL_03331</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="5">Belongs to the Vsr family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000305">
        <property type="protein sequence ID" value="KKO17988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17988">
        <property type="protein sequence ID" value="KKO17988"/>
        <property type="gene ID" value="BROFUL_03331"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4105"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006298">
        <property type="term" value="P:mismatch repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00221">
        <property type="entry name" value="Vsr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004603">
        <property type="entry name" value="DNA_mismatch_endonuc_vsr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03852">
        <property type="entry name" value="Vsr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00632">
        <property type="entry name" value="vsr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0227">DNA damage</keyword>
    <keyword evidence="4" id="KW-0234">DNA repair</keyword>
    <keyword evidence="6" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="3 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00029466"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO17988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="136" mass="16141" checksum="41AA0697E752B824" modified="2015-11-11" version="1">MDTFSSAVRSRIMARVRSQRNRSTELKIIEILKRGGLKGWRRNSPLHGKPDFIYPKQRIALFVDGCFWHGCPKCCRMPSAHRKYWVNKIERNKNRDKDVTKALKKKGWKVIRIWEHEISAAKIARKLNILSKYYKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPY5</accession>
    <name>A0A0M2UPY5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03165</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000291">
        <property type="protein sequence ID" value="KKO18148.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18148">
        <property type="protein sequence ID" value="KKO18148"/>
        <property type="gene ID" value="BROFUL_03165"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3906"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18148.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="295" mass="33334" checksum="6568748109330FBE" modified="2015-11-11" version="1">MLETFRLAKFRITVCARGQIRFPVYKGSAFRGGFGYAFKRITCVIKGKACDDCLLKQKCIYSYIFETPPPEDTEIFHLYPKVPHPFVIEPPVTEEQSFAPGDTFTFHLILIGHAIDYLPYFIYTFTELGKQGIGQGRGKYDLIQVEGIGLKDESARIYDNQTQTLINHYPIITWQDCSQKEVAHKEHEGHEENTCGGKSPVNGLCIPTATPPACEGKNPVGIGVFSEQDVSAMGRSAITISIQTPLRLRFDGHITDKIEFHILIRNLLRRISSLSYFHCNEKLDVDFKVLLPISQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ63</accession>
    <name>A0A0M2UQ63_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7">DNA repair protein RecO</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6 7">Recombination protein O</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">recO</name>
        <name evidence="9" type="ORF">BROFUL_03300</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Involved in DNA repair and RecF pathway recombination.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the RecO family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000301">
        <property type="protein sequence ID" value="KKO18022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18022">
        <property type="protein sequence ID" value="KKO18022"/>
        <property type="gene ID" value="BROFUL_03300"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1440.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00201">
        <property type="entry name" value="RecO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037278">
        <property type="entry name" value="ARFGAP/RecO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022572">
        <property type="entry name" value="DNA_rep/recomb_RecO_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003717">
        <property type="entry name" value="RecO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042242">
        <property type="entry name" value="RecO_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33991">
        <property type="entry name" value="PTHR33991"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02565">
        <property type="entry name" value="RecO_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11967">
        <property type="entry name" value="RecO_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57863">
        <property type="entry name" value="SSF57863"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00613">
        <property type="entry name" value="reco"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-0227">DNA damage</keyword>
    <keyword evidence="4 7" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="5 7" id="KW-0234">DNA repair</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA_rep/recomb_RecO_N" evidence="8">
        <location>
            <begin position="2"/>
            <end position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00033409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF11967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="249" mass="28150" checksum="8FC24AC9E23EF9E5" modified="2015-11-11" version="1">MPVVGTAAIALGRSDYSDSSQIVTFYTRDYGKIRVLAKGFKRSSGKHSSRAIDLLSHYQIIFIKKELTSLHTLTEAVLQNNYPTLRSELDKYYRALYVAELMNEFTVENDPSEQLFDILTDTLAGISTDRDATVRSLVFEIKLLKILGYLPEWGCCVQCKNRIQQASGVRFCAKEGGGVCSKCQTKFTHGIPVTPGSMVIAGRLAEMNVRGLDRVRLRLSICVEIEKMLRYYIASLLNKELNSWKYIRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ99</accession>
    <name>A0A0M2UQ99_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Sulfite:cytochrome c oxidoreductase subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_03248</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mo-molybdopterin</name>
            <dbReference type="ChEBI" id="CHEBI:71302"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000297">
        <property type="protein sequence ID" value="KKO18062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18062">
        <property type="protein sequence ID" value="KKO18062"/>
        <property type="gene ID" value="BROFUL_03248"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4004"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030151">
        <property type="term" value="F:molybdenum ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014756">
        <property type="entry name" value="Ig_E-set"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005066">
        <property type="entry name" value="MoCF_OxRdtse_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008335">
        <property type="entry name" value="Mopterin_OxRdtase_euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000572">
        <property type="entry name" value="OxRdtase_Mopterin-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036374">
        <property type="entry name" value="OxRdtase_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03404">
        <property type="entry name" value="Mo-co_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00174">
        <property type="entry name" value="Oxidored_molyb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00407">
        <property type="entry name" value="EUMOPTERIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56524">
        <property type="entry name" value="SSF56524"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81296">
        <property type="entry name" value="SSF81296"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Oxidored_molyb" evidence="4">
        <location>
            <begin position="113"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="domain" description="Mo-co_dimer" evidence="5">
        <location>
            <begin position="313"/>
            <end position="419"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001924"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF03404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="431" mass="47645" checksum="6A6EF325C1B8C540" modified="2015-11-11" version="1">MTAEKTGAVSRRFLLKMLGGGAAWLGLNKLPSAIAQVSGQAIQQMPAFTGPEVNPYWGAVGPFVIYPQKLPLIQLTDRPVQLETPRHYFLTPFTPNAAFYVRWHLEGIPSAVNLSEWRLLVEGNVGKSLALSMADLMKQYKPVSLAAVNQCSGNSRSRFQPRVPGAQWGNGAMGNALFTGVSLKDLLDAAGVKAGSLCVQFEGLEKGRGLKESVAYRYLKSLNLNDPVIHETIVAYEMNGEPLPMLNGFPVRLVVPGKFSTYWIKALTWIRVLTEPDTNFWMTKTYCVPDTPRGNITLKDVKDGHVKMIPVGTMPVRSFIITPDGSGKIPVGMPVTVRGIAFSGYGHVVNVEISEDDGKTWSKARLGDDYGKYSFRTWETTWIPKHTGRYALAVRATDEKGNTQTSEEFWNPKGYLWNTIEQQEVMVDAAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQJ8</accession>
    <name>A0A0M2UQJ8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative D-lactate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02937</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000276">
        <property type="protein sequence ID" value="KKO18373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18373">
        <property type="protein sequence ID" value="KKO18373"/>
        <property type="gene ID" value="BROFUL_02937"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.45.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.43.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016167">
        <property type="entry name" value="FAD-bd_PCMH_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016164">
        <property type="entry name" value="FAD-linked_Oxase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004113">
        <property type="entry name" value="FAD-linked_oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006094">
        <property type="entry name" value="Oxid_FAD_bind_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016171">
        <property type="entry name" value="Vanillyl_alc_oxidase_C-sub2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02913">
        <property type="entry name" value="FAD-oxidase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01565">
        <property type="entry name" value="FAD_binding_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55103">
        <property type="entry name" value="SSF55103"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="1">
        <location>
            <begin position="21"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="498" mass="55234" checksum="6BEACFB2779B71FC" modified="2015-11-11" version="1">MIRSADPDAIRPYLKDASNLSGGYADEVVFPEDEKEVAGILEEASSTKTPVTIAGNGTGLVGARIPFGGIVLSTEKLGGLRHIHQAAGEPGYAVTGPAITLRALQEAVSAKGLLYPPDPTEQNAFLGATVATNASGARTFKYGATRRWIRRLKVVLATGDILELQRGECLADKEGRLFLTGSRNVLQLKLPQYRMPEGKHSAGYYVAPGMSALDLFIGSEGTLGVITEIELALIPQPRELFSGIIFFGREEDAWQFANQARNESLKNRALQIKNQIDASALEYFDAHSLDALRSAYSQIPSKAQSAIFFEQEIQPDFGKLLREQWGRLCIDHQALSDQSWFSRSAQEHTEFRAFRHAIPVLVNRILRQHQQTKIGTDFTVPHEHLFGLFKLYRQSLCDAGLRYCIFGHVADNHLHVNLLPRNDQEADRGWAIYRKIAQQVIAWGGTISAEHGVGKIKREYLLDMFGQLGLREMAAMKKKLDPCLILGRGNIIPEEFLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQL2</accession>
    <name>A0A0M2UQL2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative ABC transporter substrate binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03396</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17945">
        <property type="protein sequence ID" value="KKO17945"/>
        <property type="gene ID" value="BROFUL_03396"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="42"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO17945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="271" mass="29555" checksum="54AEC12BCC56957F" modified="2015-11-11" version="1">MTKEQFAELRAGLFTLVTLAGFGVMVFILGTQKGYFEHQIILKTTFVNVYGLKAGAPVRFMGVGIGQVKDVVLPKELPGTGIEVILKINKSAQKNINRDSVATIKWLSYVTGDSYVEIASEEWHEPGVEDGDSIKSAEPINYATVIEGGIRMIESFSTIVKTLEDGRFAESLNNITASLDESVKALQKGDGLLSALIYDPKGKQLLENAMKTTETMHVITEKIANGEGTLGALVSDPTLYDNLKRLLGGAERSFVLRNLIRKSIKKGKDAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQN9</accession>
    <name>A0A0M2UQN9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03342</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000306">
        <property type="protein sequence ID" value="KKO17970.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17970">
        <property type="protein sequence ID" value="KKO17970"/>
        <property type="gene ID" value="BROFUL_03342"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="25"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO17970.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="53" mass="6394" checksum="CFD87FCC56F28E95" modified="2015-11-11" version="1">MPEVETQAGVRLRLMLRLMLVTRRLFYFLLMVIVLYFRSGFLRTCLCALRRQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQW9</accession>
    <name>A0A0M2UQW9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02807</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000265">
        <property type="protein sequence ID" value="KKO18483.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18483">
        <property type="protein sequence ID" value="KKO18483"/>
        <property type="gene ID" value="BROFUL_02807"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022118">
        <property type="entry name" value="Peptidase_C70_AvrRpt2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12385">
        <property type="entry name" value="Peptidase_C70"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="178"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="180"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18483.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="220" mass="24517" checksum="99963E69421E7EEC" modified="2015-11-11" version="1">MKYAPDDATGHYRIIVGYDEENGVVYFVDPWGRDLNKMTNPDGTITWSMTDFKDAWNYIGYGTDRPYWGAVIMPWRVTIHTTGEIAPGSILEVTAEITYPCLQPFDCSAYSAFNASAEIILPPEISLWQGASRIDIGSFQAGEKVTVTWLVKLDEDGPDSSITVKATGFVSGAVPEALRMGEKTKPHSNKDEDGNKKNNRNCYPAYDYTDEIGVEEHLEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URF7</accession>
    <name>A0A0M2URF7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02647</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000241">
        <property type="protein sequence ID" value="KKO18648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18648">
        <property type="protein sequence ID" value="KKO18648"/>
        <property type="gene ID" value="BROFUL_02647"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="SSF51126"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18648.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="316" mass="35667" checksum="C1CD4ADF3C6970B8" modified="2015-11-11" version="1" fragment="single">MLLSHISKIFKKPHFPLSTPTIFISLAALTATLLLLTGERCFGATYYVATNGNDRNNGSLSSPWRTIETSIAKLRPGDTLYLRGGTYYESQIAINVSGTPSNRILIKNYQSEVPVIDGGFRDFRRTSNKHWEVYDSSKSIYRSVRTYHNAMGVHGYFGRQDGNYRLVSYRRYNDLGANNEDYTNVGDIYIGPGIFWNSTDERIYIRLKPSSQAISMGYNIPSNMDPRSVVMYIFPCHEVITFGEGCSYVDMVGINLRYQNNALEFRTGSHHISITNSSITCGRAAVYIHDNVHDLVFDGISVNDNVPPWIAYSDVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URH7</accession>
    <name>A0A0M2URH7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Carbamoyl transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02619</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18668.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18668">
        <property type="protein sequence ID" value="KKO18668"/>
        <property type="gene ID" value="BROFUL_02619"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003696">
        <property type="entry name" value="Carbtransf_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02543">
        <property type="entry name" value="Carbam_trans_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Carbam_trans_N" evidence="1">
        <location>
            <begin position="2"/>
            <end position="336"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02543"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18668.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="382" mass="42999" checksum="E582F5814FF6D9B3" modified="2015-11-11" version="1">MKTLGIHIGHDSGSSLIIDGQIIADVSEERFVRLKHYAGLPVHSINFCLAAGKISFDELDFIAISGEIADLKLKTLLNLSDEQFAHIVEQNLPHRSIGRKVKGLLRNKIVYQESPPLYLRFFNLAPKTKVIKVDHHVAHAASAYYTSGYQDCLIITCDGVGDGTSLAVWNGTGGVIKEIRRYDTAGSFGWFYSLVTEALGWWVGDGEGKTMGLAPYGDRKTVTNKEILARYLPCYQEGELVRGIDFGAVKYFKEFDAFHWHFPDARKIQKAVEDYGPEHVAAEAQYLLEESLLQFIRHWVIKEQAKNLATAGGVFLNVKLNQKILEDTLVENYYIFRMRVTLALHWGLPSRYPNIFPEKVLLKGLTICIGDPSMATMKLKLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URK7</accession>
    <name>A0A0M2URK7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Rubredoxin-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02772</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000264">
        <property type="protein sequence ID" value="KKO18502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18502">
        <property type="protein sequence ID" value="KKO18502"/>
        <property type="gene ID" value="BROFUL_02772"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3433"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024934">
        <property type="entry name" value="Rubredoxin-like_dom"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50903">
        <property type="entry name" value="RUBREDOXIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rubredoxin-like" evidence="1">
        <location>
            <begin position="3"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18502.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="236" mass="26754" checksum="BFD9774A64CE4068" modified="2015-11-11" version="1">MQKEQYVCTVCGFNMVGYYPDFCPFCGAPRGKFITSEECSARYKVIGTPVNEKVTRLNSVPPLGLEHAAYRIETGGKVFWVDCPSSFDKGLKPADVITFTHHHFLGASNQYRDLFRASVQIHKLDSTHSICRAFTFDTAFTENFAEQGIEAFHTGGHTPGFTFYLFENILLICDYVFLEGNDMRFNPFGPQKETRECADKINMALQGRELSKVCGLNYVVNYEDWKQGFGNLLRKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URM2</accession>
    <name>A0A0M2URM2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 10">Flagellar biosynthetic protein FliR</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">fliR</name>
        <name evidence="11" type="ORF">BROFUL_03017</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 10">Role in flagellar biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell membrane</location>
            <topology evidence="10">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="10">Bacterial flagellum basal body</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the FliR/MopE/SpaR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18290.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18290">
        <property type="protein sequence ID" value="KKO18290"/>
        <property type="gene ID" value="BROFUL_03017"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009425">
        <property type="term" value="C:bacterial-type flagellum basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044780">
        <property type="term" value="P:bacterial-type flagellum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006605">
        <property type="term" value="P:protein targeting"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006303">
        <property type="entry name" value="FliR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002010">
        <property type="entry name" value="T3SS_IM_R"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30065">
        <property type="entry name" value="PTHR30065"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01311">
        <property type="entry name" value="Bac_export_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00953">
        <property type="entry name" value="TYPE3IMRPROT"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01400">
        <property type="entry name" value="fliR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 10" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="5 10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="11" id="KW-0966">Cell projection</keyword>
    <keyword evidence="11" id="KW-0969">Cilium</keyword>
    <keyword evidence="11" id="KW-0282">Flagellum</keyword>
    <keyword evidence="8 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="24"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="64"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="115"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="174"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="199"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002578"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009772"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00021717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU362071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO18290.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="248" mass="27174" checksum="CB54EA30B242BEA6" modified="2015-11-11" version="1">MIVFFRVGGMLLFAPIFGNANVPLQIRIAISLMFTCILYPVVIKHSPPLPADIISYAFIVTKEIAIGAVIGFAASLIFATFTMAGYLISNQMGLDTAAIVDPSSETGEEEQSISIFYNMIAFLIFFTINGHHWFIKTTAQSFEIIPLGQFQYTTVTLTKILAAFKTFLIMGIRISAPSLVVLLLTVVVLGLMTKVAQEINVFLIAFPLKILIGFLILIVALPFVINAMKSYLTPLESSMASFLSVMRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URV7</accession>
    <name>A0A0M2URV7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02929</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000275">
        <property type="protein sequence ID" value="KKO18375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18375">
        <property type="protein sequence ID" value="KKO18375"/>
        <property type="gene ID" value="BROFUL_02929"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3624"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019268">
        <property type="entry name" value="DUF2278"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10042">
        <property type="entry name" value="DUF2278"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="258" mass="28601" checksum="A0C436FFBC3DAF05" modified="2015-11-11" version="1">MPLKNYGVLKGRVIGSRPGTGPSPHYQINVVAGATQYRIAINVKSQLAPSELLYLVVENFQHPLTVGLSELGHGFSEVQRRPGGIALDFIRGNLFHRTQMRPLPYSVPGPDNDLNEKLHAYVQRAIDDEDATIYAFGERWGPENDLRDRYFGFLPGNGVHDIHMNQGNSGRFTEQDGVWQDGGLLLHFPAMTGGSGEVLFPEQWVAIFLAFQSQAWHTDDVTGHRITPGGRLKRSPTDAYGLLPQWLIPKEMMQGGSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URX3</accession>
    <name>A0A0M2URX3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_02484</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell outer membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the OmpP1/FadL family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18823.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18823">
        <property type="protein sequence ID" value="KKO18823"/>
        <property type="gene ID" value="BROFUL_02484"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005017">
        <property type="entry name" value="OMPP1/FadL/TodX"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35093">
        <property type="entry name" value="PTHR35093"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03349">
        <property type="entry name" value="Toluene_X"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0732">Signal</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <feature type="signal peptide" evidence="8">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005643955" evidence="8">
        <location>
            <begin position="25"/>
            <end position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18823.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="293" mass="31982" checksum="784A220D2F30765A" modified="2015-11-11" version="1">MCQKRIGKEIAAFLFLVFCTLQNAYSSGFAIFTQGASALGQADSVIAHTDSPSAVFFNPALINKLEGTHIETGTTFIFPSREFKSDITGVDDETEDSMFYPSTVYITHKFNEQISAGLGIFTPFGLATTWDDDWEGRYIGTKSEMKTFNINPVVSYQLLPNVALAAGVDVLFLDTTLEKKINLSGFGLPDANQEFDGYGNGVGYNFGIVYDVTKDISLGASYRSEIKVDIDGDSDFDLPSSTPSPLRALFPDTDGKADLTLPQQAHVGVCYKGFDRLTLETTLRLEAGLLTMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US99</accession>
    <name>A0A0M2US99_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02336</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18943">
        <property type="protein sequence ID" value="KKO18943"/>
        <property type="gene ID" value="BROFUL_02336"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="83" mass="9486" checksum="35E7BE03401AD065" modified="2015-11-11" version="1">MGISRMVLMFTITIAMAMFVVSERNKIIETGYLVAKLQRNCDESSEKNRKLNYHVGRLKSPEVIVYKVQSLKLPLIPQENESG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USA2</accession>
    <name>A0A0M2USA2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02554</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000238">
        <property type="protein sequence ID" value="KKO18722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18722">
        <property type="protein sequence ID" value="KKO18722"/>
        <property type="gene ID" value="BROFUL_02554"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="32" mass="3833" checksum="B80762E7145CDFFF" modified="2015-11-11" version="1">MMNLSFMACTVRLGILVKMMEVEKEWSKIFHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USH8</accession>
    <name>A0A0M2USH8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Cysteine desulfurase</fullName>
            <ecNumber evidence="4">2.8.1.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_03392</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[sulfur carrier]-H + L-cysteine = [sulfur carrier]-SH + L-alanine</text>
            <dbReference type="Rhea" id="RHEA:43892"/>
            <dbReference type="Rhea" id="RHEA-COMP:14737"/>
            <dbReference type="Rhea" id="RHEA-COMP:14739"/>
            <dbReference type="ChEBI" id="CHEBI:29917"/>
            <dbReference type="ChEBI" id="CHEBI:35235"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="ChEBI" id="CHEBI:64428"/>
            <dbReference type="EC" id="2.8.1.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.8.1.7" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17941">
        <property type="protein sequence ID" value="KKO17941"/>
        <property type="gene ID" value="BROFUL_03392"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4169"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031071">
        <property type="term" value="F:cysteine desulfurase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044571">
        <property type="term" value="P:[2Fe-2S] cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000192">
        <property type="entry name" value="Aminotrans_V_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010240">
        <property type="entry name" value="Cys_deSase_IscS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016454">
        <property type="entry name" value="Cysteine_dSase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11601:SF34">
        <property type="entry name" value="PTHR11601:SF34"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00266">
        <property type="entry name" value="Aminotran_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005572">
        <property type="entry name" value="NifS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminotran_5" evidence="8">
        <location>
            <begin position="4"/>
            <end position="365"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO17941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="388" mass="41594" checksum="547E338570A08D10" modified="2015-11-11" version="1">MTKIYMDNASGTPIHPKVVEAMMPFLKDGFGNPSNLHQFGRATNEALQAAREQVAHLINAKPKEIIFTSSGTEANNFALKGILAAHKKKGNHIITSEIEHFSVLNPLKSLEKSGYSVTCLPVDKYGVVNPDDVKKAITPTTTMVSIMYANGEIGTIEPVKEIGAITKEKGILFHTDAVAATGNIPVDVRGVPVDALSMSANQFSGPSGIGALYVREGVRILPSWRAGYRRGAAGQGTENIVGIVGMGKAAELAKAEMTQRMDKVQNLRNQLRDGIVKNMSHVYINGHPLNRLPGNLSLCIEYIEGESVLLFLDMQGIAISSGSACTSRSLKASHVITATGVDAALAQGAVLFSLGIDNSADDVNYILEKLPPTVERLRQMSPLYTKGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USN0</accession>
    <name>A0A0M2USN0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ferredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02445</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000232">
        <property type="protein sequence ID" value="KKO18852.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18852">
        <property type="protein sequence ID" value="KKO18852"/>
        <property type="gene ID" value="BROFUL_02445"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.480">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040506">
        <property type="entry name" value="RACo_linker"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041414">
        <property type="entry name" value="Raco_middle"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042259">
        <property type="entry name" value="Raco_middle_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17650">
        <property type="entry name" value="RACo_linker"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17651">
        <property type="entry name" value="Raco_middle"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="1">
        <location>
            <begin position="6"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18852.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="440" mass="49041" checksum="54293FD9DB6C0265" modified="2015-11-11" version="1">MENSRSKVHFFPVDVTVEIEKGKTILDAAYKGDLFINALCGGDGTCGKCKVILGSGMIESMPTTHVSVSEAQKGYVLACSTKVMGNVEVIIPEESKLDKSQILVSEFPQFSGSLAAATAQVEHFPRDPLVKKVYLELSQPTLDDSMADYERLCREIMVKTHIPLEKLTTNLDVLKRLPHMVRNSDWKVTVTLGYRGSSVEIMEMQGGNVSEGNYGVAVDVGTTTVVAHLMNLSRGETIDIEATYNSQIKYGDDYIQRIMYAAENNAMELMQEVLVEDINHLISTLVKRNHLSIHDIHAVVCAGNTVMTHFLLGLDPTNIRKEPYLPTASFVPPLRAHEVGIKMNNNGLLYTLRVLALMWAAIFLPAPWQSDWTRQRSCRCLLILARMVRSCWAIKTGWCAVPHRPALLLKAVASPVAPVRLRALLKRCRLPKILMLRTRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USS6</accession>
    <name>A0A0M2USS6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Transket_pyr domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02611</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18660">
        <property type="protein sequence ID" value="KKO18660"/>
        <property type="gene ID" value="BROFUL_02611"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005475">
        <property type="entry name" value="Transketolase-like_Pyr-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02779">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00861">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="60"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="domain" description="Transket_pyr" evidence="2">
        <location>
            <begin position="6"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00861"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="165" mass="18873" checksum="438E49FBDFC47362" modified="2015-11-11" version="1">MNDSINNCRKDIVNKIIPYARRDKRIVLLVCDMGFGVTDKFQEEFPDKIFNMGMMEQGTVGIAAGMAMTGFIPIVYSIVNFLVFRAIEQIRNDVVLQNLNVKFIATGVNNYFRFLGPSHCCGEDDKKIMRLINMKVFDPYEGKKVEIDTLINDWITDPGPGYFRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT13</accession>
    <name>A0A0M2UT13_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02102</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000210">
        <property type="protein sequence ID" value="KKO19193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19193">
        <property type="protein sequence ID" value="KKO19193"/>
        <property type="gene ID" value="BROFUL_02102"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="354" mass="38999" checksum="B818EE02835B691B" modified="2015-11-11" version="1">MPEVAYEATATGSQRRRPIEWLRTLYRRDNLGGLLTLGDLQPLALPGESYKLAFTPGLLAQVFQRPQQGQAAEPLLPDQAAVLGGQDGNRGGYLRSQTMKADGRFPATDADDHWWIPSGQSFFTNDPLDAAATELAQARQHFFLPRRYRDPFGQEAFVDFDANDLLMTETRDALGNRVTVNVNDYRVLQPSLVSDPNRNRTEVAFDTLGMVVGTAVMGKPAPAPVEGDTLTGFVADLTQAQLDGFFDAADPHATAAALLKDATTRIVYDLDRFWRSRDANPDKPDKWEAPFAATLARETHASSPLPPQGLKIQLSFPIPTALAGRSRKRYKPKKARFRCVMVTAGFLLGRITSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT14</accession>
    <name>A0A0M2UT14_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Site-specific tyrosine recombinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">xerD_5</name>
        <name evidence="3" type="ORF">BROFUL_03219</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000293">
        <property type="protein sequence ID" value="KKO18116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18116">
        <property type="protein sequence ID" value="KKO18116"/>
        <property type="gene ID" value="BROFUL_03219"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tyr recombinase" evidence="2">
        <location>
            <begin position="1"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="148" mass="16747" checksum="F7277B9678426C8A" modified="2015-11-11" version="1">MFRKIIIIQETKSGKPRTVPLNQIALGVLAEKAKVRHMKSDLVFLSRASTKIARHNLRRAFNTALDKSGIQDFHFHDIRHAFATRLAQRGGDIYKVSKLLGHAHISMSTRYAHLCPESLRDGVNILENLGHDLVMVEGNRMCQLPENP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT27</accession>
    <name>A0A0M2UT27_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02091</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000209">
        <property type="protein sequence ID" value="KKO19213.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19213">
        <property type="protein sequence ID" value="KKO19213"/>
        <property type="gene ID" value="BROFUL_02091"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19213.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="154" mass="17654" checksum="EFC0C794EFAD4F74" modified="2015-11-11" version="1">MLRPYLFKKLKCYFFASFFATLFTPYQKVPFVYKRRIASDKTPRNDTGYVFDDIRYVVIARVLSEAISRFYNGELVAAVPRSAIIMTPFGITASLSCPLVVMASKSALNRYEKFSKNCIVTKQTKSVQIKKILYGNTIKGGETHDLYQKYTLPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT29</accession>
    <name>A0A0M2UT29_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">TVP38/TMEM64 family membrane protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02301</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the TVP38/TMEM64 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO19007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19007">
        <property type="protein sequence ID" value="KKO19007"/>
        <property type="gene ID" value="BROFUL_02301"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032816">
        <property type="entry name" value="SNARE_assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015414">
        <property type="entry name" value="TMEM64"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12677">
        <property type="entry name" value="PTHR12677"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09335">
        <property type="entry name" value="SNARE_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="42"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="76"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="184"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU366058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19007.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="210" mass="23609" checksum="0FD5BA964A893A72" modified="2015-11-11" version="1">MVTVIKLFTVIAIIVLSVYLYPHLNHQNIGAFVKENRTAAPLFFIAITGLRPILFFLPSMGLTIVAGILFGTIWGTVYVVVGGALSTLVGFYFARWLGRDVVKRLVNKNSIIRTLDERSRMYGKHAVLYMRLFNLPWDMVSYWAGLSGICFSDYYRASLIPLVPISFLYTYFGSHVLTPTSTGFIVSLSIMLVMGAIPYIKPKFKKKAYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTG5</accession>
    <name>A0A0M2UTG5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Putative flagellar motor switch protein FliN</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">fliN</name>
        <name evidence="8" type="ORF">BROFUL_03013</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the FliN/MopA/SpaO family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18286">
        <property type="protein sequence ID" value="KKO18286"/>
        <property type="gene ID" value="BROFUL_03013"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3721"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009425">
        <property type="term" value="C:bacterial-type flagellum basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003774">
        <property type="term" value="F:cytoskeletal motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.330.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012826">
        <property type="entry name" value="FliN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001543">
        <property type="entry name" value="FliN-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001172">
        <property type="entry name" value="FliN_T3SS_HrcQb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036429">
        <property type="entry name" value="SpoA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01052">
        <property type="entry name" value="FliMN_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00956">
        <property type="entry name" value="FLGMOTORFLIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101801">
        <property type="entry name" value="SSF101801"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02480">
        <property type="entry name" value="fliN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0966">Cell projection</keyword>
    <keyword evidence="4" id="KW-0145">Chemotaxis</keyword>
    <keyword evidence="8" id="KW-0969">Cilium</keyword>
    <keyword evidence="5" id="KW-0283">Flagellar rotation</keyword>
    <keyword evidence="8" id="KW-0282">Flagellum</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FliMN_C" evidence="7">
        <location>
            <begin position="45"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="125" mass="13564" checksum="01DB5388E46BB54A" modified="2015-11-11" version="1">MEQVKENNGNASTGNEAHIQSIQFSQLNTFNSPDLKDEGKRNLDLILDIPVPVSVELGHTMMLVKDILSLAQGSIVELDKVAGAPVDLLIRGKLLAQGEVVVVDENFGLKITNICASEERIRNLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTL4</accession>
    <name>A0A0M2UTL4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">CDP-diacylglycerol--serine O-phosphatidyltransferase</fullName>
            <ecNumber evidence="4">2.7.8.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Phosphatidylserine synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_02988</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a CDP-1,2-diacyl-sn-glycerol + L-serine = a 1,2-diacyl-sn-glycero-3-phospho-L-serine + CMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:16913"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:57262"/>
            <dbReference type="ChEBI" id="CHEBI:58332"/>
            <dbReference type="ChEBI" id="CHEBI:60377"/>
            <dbReference type="EC" id="2.7.8.8"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the CDP-alcohol phosphatidyltransferase class-I family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.8.8" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000281">
        <property type="protein sequence ID" value="KKO18331.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18331">
        <property type="protein sequence ID" value="KKO18331"/>
        <property type="gene ID" value="BROFUL_02988"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3694"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003882">
        <property type="term" value="F:CDP-diacylglycerol-serine O-phosphatidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1760">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004533">
        <property type="entry name" value="CDP-diaglyc--ser_O-PTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000462">
        <property type="entry name" value="CDP-OH_P_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043130">
        <property type="entry name" value="CDP-OH_PTrfase_TM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01066">
        <property type="entry name" value="CDP-OH_P_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00473">
        <property type="entry name" value="pssA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00379">
        <property type="entry name" value="CDP_ALCOHOL_P_TRANSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9" id="KW-0808">Transferase</keyword>
    <keyword evidence="8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="87"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="117"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="152"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="186"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="209"/>
            <end position="226"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00017171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00032361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18331.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="238" mass="26070" checksum="87B613DBD649A362" modified="2015-11-11" version="1">MLPTVVTLGNMICGFSSILCASNHQFEIAAWLIVAAMALDAFDGRLARMMKTSSKLGSQLDSMADLTTFGIAPAILMIKTCTNFPNLFLWGVGLFFMICAAFRLARFNTQKDEETTMARHFFTGLPTTLSGGTIAQLVILNHFIQIKFGIDIVAVLLPFITFALGLFMVSKVPFFNITGKIGLKQGIWFMVLEFSAAIVFFVLTPELALSTALSCYLISCAMYGVVKGRHLKKGYSVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTU7</accession>
    <name>A0A0M2UTU7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02917</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18411">
        <property type="protein sequence ID" value="KKO18411"/>
        <property type="gene ID" value="BROFUL_02917"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18411.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="103" mass="11955" checksum="095AFC652842DB9D" modified="2015-11-11" version="1">MRAEKKPIFLFLQVFLQPYLPLIRRCYLFIREGLFCGVYTEHNECARNDNVPSVIKDIARVIARVLSEAISRFHNGELVAAVPRYGINDIVIQKTNRLFQTTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU46</accession>
    <name>A0A0M2UU46_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="11 12">ATP synthase subunit a</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">ATP synthase F0 sector subunit a</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">F-ATPase subunit 6</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11 13" type="primary">atpB</name>
        <name evidence="13" type="ORF">BROFUL_01695</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11 12">Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11 12">Cell membrane</location>
            <topology evidence="11 12">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 11 12">Belongs to the ATPase A chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000176">
        <property type="protein sequence ID" value="KKO19588.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19588">
        <property type="protein sequence ID" value="KKO19588"/>
        <property type="gene ID" value="BROFUL_01695"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045263">
        <property type="term" value="C:proton-transporting ATP synthase complex, coupling factor F(o)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01393">
        <property type="entry name" value="ATP_synth_a_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045082">
        <property type="entry name" value="ATP_syn_F0_a_bact/chloroplast"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000568">
        <property type="entry name" value="ATP_synth_F0_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023011">
        <property type="entry name" value="ATP_synth_F0_asu_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035908">
        <property type="entry name" value="F0_ATP_A_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42823">
        <property type="entry name" value="PTHR42823"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00119">
        <property type="entry name" value="ATP-synt_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00123">
        <property type="entry name" value="ATPASEA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81336">
        <property type="entry name" value="SSF81336"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01131">
        <property type="entry name" value="ATP_synt_6_or_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00449">
        <property type="entry name" value="ATPASE_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="11" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 11 12" id="KW-0138">CF(0)</keyword>
    <keyword evidence="6 11 12" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="13" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8 11 12" id="KW-0406">Ion transport</keyword>
    <keyword evidence="9 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 11 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 11 12" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="75"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="109"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="169"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="192"/>
            <end position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022547"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01393"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU000483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO19588.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="225" mass="24762" checksum="AC0371CB7B53E56E" modified="2015-11-11" version="1">MKIFNIFPETIFSIGPVQITDTVITTWIVMAAIIAICYLSTRKLSVKPSFFQEILEAIFEAIEKTIKDILPLDPWLVVPVLGTLWFLIGFSNLAGLIPGLKTPTADLNTTFAFALISFSMTHVVGIATQGLRGYLMHYKEPTWILLPFHLIAEVTRTVALAVRLFGNMLSGDMIAIILLGIVGLLVPIPFSLLHIIIALIQAYIFGVLTLVFIAGGMRTTSEKEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU78</accession>
    <name>A0A0M2UU78_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02133</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19150">
        <property type="protein sequence ID" value="KKO19150"/>
        <property type="gene ID" value="BROFUL_02133"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13174">
        <property type="entry name" value="TPR_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="26"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="60"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="94"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="264"/>
            <end position="297"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="374" mass="43396" checksum="26913C04DE8FE927" modified="2015-11-11" version="1">MINTNKNILIKPGVANQNDIQNYDAFRTRVNLANSAIEKGNWDEAYPNLKAAVEMNPNYAQGYNHLGVFFTRNKKYEEAIDKFKKALQIDFSMTEVHYNLAYLYMEREEYSTALPYLKEVVLANSDDYETYYLMGICCSRSDMKNEAEAFFSEAHRLRPEHIPSAINLSKLLIKKTDYTKAKNILLYTYMNDPSLPEVNLLLGIIYKMQKKHTRAMHYLRETLLKDKNNAEAYNLLGECCVESGMDKQAEAFFSMAVKLDSMYREAFYNLGNLYYRQEKYENAIYALEEYLKTKEAADTINSLWSENAHTDDSDVVSLYNLLGYCFQAKKNPIKARTLWEKSLAIQPLQQDIKDELSRLPQSPLGQKRISLLID</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU80</accession>
    <name>A0A0M2UU80_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01705</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S13 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000176">
        <property type="protein sequence ID" value="KKO19598.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19598">
        <property type="protein sequence ID" value="KKO19598"/>
        <property type="gene ID" value="BROFUL_01705"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004185">
        <property type="term" value="F:serine-type carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000667">
        <property type="entry name" value="Peptidase_S13"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30023">
        <property type="entry name" value="PTHR30023"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02113">
        <property type="entry name" value="Peptidase_S13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00922">
        <property type="entry name" value="DADACBPTASE3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00666">
        <property type="entry name" value="PBP4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006096"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19598.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="493" mass="55025" checksum="331901A77D566BAC" modified="2015-11-11" version="1">MWCWRSNYVTIFAFFAVTCLFFTAISEAKIAGSHDLNKRLQVFLKNPSLKNVSCGVSIVSVTKNDSLFNYRNNDLFSVASNMKLLTTAAALEYLGPDFEYRTTVCARGIIADSGELRGDLIIKGGGDPNLSGRFYNGNIMAIPESWACAVKKRGIQVIAGDIIADDRIFDRAYTHPNWPENQLSEWYCAPSCGLSFNDNCIDITLVPDKRPGKAVRLFVEPRTSYFTIRNTCIYTSDKKEHRYAISRKPGTNEIVIKGKFWVNASPEKTWVSVHNPALYLATVLKETLEKNGVAVKGSVRLIDENDSFDEEGEPIIQTTSTMRQTILVTNKQSQNFYAEQIMKTLGAQIKGRGTSEAGIEVVREFMGKIGFRPGEYYIDDGCGLSKGNRLSPEMLTTLLAYMSKHSYGKVLLDSLPTSGIDGGLRRRMDAPKYRSRIRAKTGYIARTSTLSGYIDTTQGDVFAFSILMNNFSNLKAMQKIQDGICQAIVDCYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU82</accession>
    <name>A0A0M2UU82_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putative heme protein small subunit NaxS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02744</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000256">
        <property type="protein sequence ID" value="KKO18556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18556">
        <property type="protein sequence ID" value="KKO18556"/>
        <property type="gene ID" value="BROFUL_02744"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13442">
        <property type="entry name" value="Cytochrome_CBB3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0349">Heme</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644187" evidence="5">
        <location>
            <begin position="27"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="6">
        <location>
            <begin position="34"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="126" mass="13517" checksum="C7403CADA829254D" modified="2015-11-11" version="1">MKLFRLSYIIPVVAGLGLSLGSSAWALTHHTPGDTTKSPYTIFAGLGFAVQESCYYCHGNGGKGTAKGHEYGVPDFTDPAFQSSKTDEGLVKHINAGKGKCPGYQGKMSPEMIEKMVEIVRNFGTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUC2</accession>
    <name>A0A0M2UUC2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">EB_dh domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_03227</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000295">
        <property type="protein sequence ID" value="KKO18079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18079">
        <property type="protein sequence ID" value="KKO18079"/>
        <property type="gene ID" value="BROFUL_03227"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019020">
        <property type="entry name" value="Cyt-c552/DMSO_Rdtase_haem-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09459">
        <property type="entry name" value="EB_dh"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00887">
        <property type="entry name" value="EB_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0249">Electron transport</keyword>
    <keyword evidence="2" id="KW-0349">Heme</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="EB_dh" evidence="6">
        <location>
            <begin position="28"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="219" mass="24074" checksum="0A10F34E8C77D83C" modified="2015-11-11" version="1">MAIHNLSGSSRAITAVFVPGPITINLADPAWAHAQEMTISLSRRLHESGARLPSEAEKSRDVKIKVVHNATDIFFLCQWKQSTAHITVDDYTLFADAFAIEIPLITEESPLWMGAADKPVNIIYWRADLPGPENIVGGGIGTTQKSPDAVSQNIRHFQRWANGVWSLIITRPMAASSNNQVSFARGGSYRVAFANWKGGIDAERGGNKIVSDWQHLSIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUF4</accession>
    <name>A0A0M2UUF4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Acetolactate synthase</fullName>
            <ecNumber evidence="7">2.2.1.6</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">BROFUL_02040</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H(+) + 2 pyruvate = (2S)-2-acetolactate + CO2</text>
            <dbReference type="Rhea" id="RHEA:25249"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:58476"/>
            <dbReference type="EC" id="2.2.1.6"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 1/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4">Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 1/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Dimer of large and small chains.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the acetolactate synthase small subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.2.1.6" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19240">
        <property type="protein sequence ID" value="KKO19240"/>
        <property type="gene ID" value="BROFUL_02040"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2543"/>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00055"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00049">
        <property type="reaction ID" value="UER00059"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003984">
        <property type="term" value="F:acetolactate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990610">
        <property type="term" value="F:acetolactate synthase regulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009099">
        <property type="term" value="P:valine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd04878">
        <property type="entry name" value="ACT_AHAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004789">
        <property type="entry name" value="Acetalactate_synth_ssu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027271">
        <property type="entry name" value="Acetolactate_synth/TF_NikR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019455">
        <property type="entry name" value="Acetolactate_synth_ssu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039557">
        <property type="entry name" value="AHAS_ACT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003667">
        <property type="entry name" value="NqrDE/RnfAE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30239">
        <property type="entry name" value="PTHR30239"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10369">
        <property type="entry name" value="ALS_ss_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02508">
        <property type="entry name" value="Rnf-Nqr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00119">
        <property type="entry name" value="acolac_sm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="14" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="13 15" id="KW-0472">Membrane</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-1278">Translocase</keyword>
    <keyword evidence="10 15" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="12 15" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="6"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="44"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="84"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="116"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="150"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="domain" description="ACT" evidence="16">
        <location>
            <begin position="218"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000673"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005025"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00006341"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00011744"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00013145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="KKO19240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="373" mass="40903" checksum="A785A293C56AF139" modified="2015-11-11" version="1">MIKELALIIVSVVFVNNFVLAKFLGLCPFLGVSQKTSSAMGMGVAVTFVMTLSSAITWIVYNFILLPGDANIIAKVFPSIRELGLIEVLKTISYILVIATLVQLVEMMLRKMVPALYESLGIYLPLITTNCAVLGVALLNTTDSPKHMGFLQATVQGFGAGIGFTVAMLLMSGIRERLAVAIYLNPYAVFRLPLFAPDLWPLPSLVFQEWFSKIMRHVISLLVENKVGVLARITGLISGRGFNIDSLAVGETENPALSRMTIVVRGDDAILEQVRKQLGKIIDVIKVIDFTSEEFVERNLMLLKVNVPAGKRSEIIEIVEIFRGKIIDVGQKDLVVELAGAEEKLEAMIHLLRAYGIKELVRTGSIAIGRGTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUG6</accession>
    <name>A0A0M2UUG6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Trigger factor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02678</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000246">
        <property type="protein sequence ID" value="KKO18621.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18621">
        <property type="protein sequence ID" value="KKO18621"/>
        <property type="gene ID" value="BROFUL_02678"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3318"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1050">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046357">
        <property type="entry name" value="PPIase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005215">
        <property type="entry name" value="Trig_fac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037041">
        <property type="entry name" value="Trigger_fac_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008881">
        <property type="entry name" value="Trigger_fac_ribosome-bd_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036611">
        <property type="entry name" value="Trigger_fac_ribosome-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30560">
        <property type="entry name" value="PTHR30560"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05697">
        <property type="entry name" value="Trigger_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102735">
        <property type="entry name" value="SSF102735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00115">
        <property type="entry name" value="tig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Trigger_N" evidence="1">
        <location>
            <begin position="1"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18621.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="287" mass="32296" checksum="F78E86E63E041C3C" modified="2015-11-11" version="1">MNVTIEEAGPCKKVLKFEISKETIESEFEKKTVEVCDTVELPGFRKGRAPRKLVEKRFGPQIKDEVKQSVVSGCYQKTLDEHKLNPVGDPKFGEIALEMGKPLTFDVTLEVWPSFEVNQYKGLPLKKKPAEVTEDDLQKALRDMAIRKAQLTVVKDGKVQKGDQVICDCTVEVDGNAVLKDEDIEIPVADGVAVAATIIPDLARKLDGSISGEEREFNIKLSQDFVNEEYRGKEAKLELMVKEIKRLILPDINEDFAKTLGFQSLEDLKSQMKKRIEIDKRDGSKTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUH6</accession>
    <name>A0A0M2UUH6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ATPase family associated with various cellular activities (AAA)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02668</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000245">
        <property type="protein sequence ID" value="KKO18631.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18631">
        <property type="protein sequence ID" value="KKO18631"/>
        <property type="gene ID" value="BROFUL_02668"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="2">
        <location>
            <begin position="50"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18631.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="345" mass="39042" checksum="020491549E589C63" modified="2015-11-11" version="1">MSIFLKGQPPLESKKGNSDLPLPVRHTLDNPADYITETGLTDAVDMAIILGQPLLLTGEAGTGKTLLAYVVGNELGLETYKFETKSTSAARDLFYLYDTVGRFQAKQTGNEGINPVDYLTYNALGKAILQTLKKDEVNDWLPQARKEEARSDQFTRDSRREADWQRRSIVLIDEIDKAPRDFPNDILNEIENMYFKIPELGNKSFVAAAALRPLVFITSNSEKHLPDAFLRRCIFYNIDFPKADIMKKIIERRVGRYVTDSKTFLNKAVGLFYELREPKAGLQKKPATAELLGWIIALKEMNKDQADPLSRVNEEKILSSLSVLIKNTEDIAQAKKAVVQWLRKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUH7</accession>
    <name>A0A0M2UUH7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 8">Phosphoglucosamine mutase</fullName>
            <ecNumber evidence="6 8">5.4.2.10</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">glmM</name>
        <name evidence="13" type="ORF">BROFUL_01580</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 8">Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 8">
            <text>alpha-D-glucosamine 1-phosphate = D-glucosamine 6-phosphate</text>
            <dbReference type="Rhea" id="RHEA:23424"/>
            <dbReference type="ChEBI" id="CHEBI:58516"/>
            <dbReference type="ChEBI" id="CHEBI:58725"/>
            <dbReference type="EC" id="5.4.2.10"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="6">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="PTM">
        <text evidence="6">Activated by phosphorylation.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the phosphohexose mutase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.2.10" evidence="6 8"/>
    <dbReference type="EMBL" id="LAQJ01000166">
        <property type="protein sequence ID" value="KKO19708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19708">
        <property type="protein sequence ID" value="KKO19708"/>
        <property type="gene ID" value="BROFUL_01580"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1949"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008966">
        <property type="term" value="F:phosphoglucosamine mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05802">
        <property type="entry name" value="GlmM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01554_B">
        <property type="entry name" value="GlmM_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005844">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016055">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-I/II/III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005845">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005846">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005843">
        <property type="entry name" value="A-D-PHexomutase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036900">
        <property type="entry name" value="A-D-PHexomutase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016066">
        <property type="entry name" value="A-D-PHexomutase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005841">
        <property type="entry name" value="Alpha-D-phosphohexomutase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006352">
        <property type="entry name" value="GlmM_bact"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02878">
        <property type="entry name" value="PGM_PMM_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02879">
        <property type="entry name" value="PGM_PMM_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02880">
        <property type="entry name" value="PGM_PMM_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00408">
        <property type="entry name" value="PGM_PMM_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00509">
        <property type="entry name" value="PGMPMM"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53738">
        <property type="entry name" value="SSF53738"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55957">
        <property type="entry name" value="SSF55957"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01455">
        <property type="entry name" value="glmM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00710">
        <property type="entry name" value="PGM_PMM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6 8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4 6 7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 6 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PGM_PMM_I" evidence="10">
        <location>
            <begin position="32"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_II" evidence="11">
        <location>
            <begin position="190"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_III" evidence="12">
        <location>
            <begin position="290"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_IV" evidence="9">
        <location>
            <begin position="406"/>
            <end position="473"/>
        </location>
    </feature>
    <feature type="active site" description="Phosphoserine intermediate" evidence="6">
        <location>
            <position position="132"/>
        </location>
    </feature>
    <feature type="binding site" description="via phosphate group" evidence="6">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="273"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="275"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="277"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="Phosphoserine" evidence="6">
        <location>
            <position position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004327"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF02879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF02880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO19708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="479" mass="52101" checksum="793B0E290A0F71C5" modified="2015-11-11" version="1">MKKVNPDRLVRGFRISDFVLSDSFGLGMNMEKLFGTDGIRGIANRFPMTPEFVVNIGKATAHVFKEKYGKKRPKLVIGRDTRLSGCMIESALTSGILSVGADVFLVGHMPTPAIAHITKSLNVDAGMVISASHNPAADNGIKIFSGDGYKLSDEVEEEIEKYIVAEKVNTEQITGGFIGSAHGVDDAKGRYIEFAKASVKGMSLQGLKIVLDCANGAAYNTAPHILRELGAEVIVLNDKPDGLNINLNCGALHPEIMMEVVKKEKADIGIALDGDADRVIVCDEKGNNVDGDHIIAICAIHLKEKGILKKNCVVTTIMTNKGFDIAMDEKGIHVVKTKVGDRYVIDEMRKKGYVLGGEQSGHIIFSNHTTTGDGIISALQLLGIMKEKGEKLSKLATCMKSLPQVLVNVKVKEKRDIDTMEVKRDIRKAEEKLGAKGRVLVRYSGTENLCRVMIEGEQKKEIQRMANEIAQGIKNEIGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUK8</accession>
    <name>A0A0M2UUK8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03145</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000288">
        <property type="protein sequence ID" value="KKO18164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18164">
        <property type="protein sequence ID" value="KKO18164"/>
        <property type="gene ID" value="BROFUL_03145"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="43" mass="4966" checksum="6A64DE7DBA6F9C72" modified="2015-11-11" version="1">MSLHDARTTNRKSHPDYERLFDIVFAVKMKRYLSAVQKLNAGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUL8</accession>
    <name>A0A0M2UUL8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B</fullName>
            <shortName evidence="10">Asp/Glu-ADT subunit B</shortName>
            <ecNumber evidence="10">6.3.5.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">gatB</name>
        <name evidence="12" type="ORF">BROFUL_03123</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9 10">Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>ATP + H2O + L-aspartyl-tRNA(Asn) + L-glutamine = ADP + 2 H(+) + L-asparaginyl-tRNA(Asn) + L-glutamate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:14513"/>
            <dbReference type="Rhea" id="RHEA-COMP:9674"/>
            <dbReference type="Rhea" id="RHEA-COMP:9677"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:78515"/>
            <dbReference type="ChEBI" id="CHEBI:78516"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 10">
            <text>ATP + H2O + L-glutamine + L-glutamyl-tRNA(Gln) = ADP + H(+) + L-glutamate + L-glutaminyl-tRNA(Gln) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:17521"/>
            <dbReference type="Rhea" id="RHEA-COMP:9681"/>
            <dbReference type="Rhea" id="RHEA-COMP:9684"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:78520"/>
            <dbReference type="ChEBI" id="CHEBI:78521"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="4 10">Heterotrimer of A, B and C subunits.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the GatB/GatE family. GatB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.-" evidence="10"/>
    <dbReference type="EMBL" id="LAQJ01000287">
        <property type="protein sequence ID" value="KKO18174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18174">
        <property type="protein sequence ID" value="KKO18174"/>
        <property type="gene ID" value="BROFUL_03123"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3857"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050566">
        <property type="term" value="F:asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050567">
        <property type="term" value="F:glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00121">
        <property type="entry name" value="GatB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004413">
        <property type="entry name" value="Apn/Gln-ADT_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017959">
        <property type="entry name" value="Asn/Gln-tRNA_amidoTrfase_suB/E"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006075">
        <property type="entry name" value="Asn/Gln-tRNA_Trfase_suB/E_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018027">
        <property type="entry name" value="Asn/Gln_amidotransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003789">
        <property type="entry name" value="Asn/Gln_tRNA_amidoTrase-B-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042114">
        <property type="entry name" value="GatB_C_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023168">
        <property type="entry name" value="GatB_Yqey_C_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017958">
        <property type="entry name" value="Gln-tRNA_amidoTrfase_suB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11659">
        <property type="entry name" value="PTHR11659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02934">
        <property type="entry name" value="GatB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02637">
        <property type="entry name" value="GatB_Yqey"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00845">
        <property type="entry name" value="GatB_Yqey"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="SSF55931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89095">
        <property type="entry name" value="SSF89095"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00133">
        <property type="entry name" value="gatB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01234">
        <property type="entry name" value="GATB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="6 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8 10" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GatB_Yqey" evidence="11">
        <location>
            <begin position="305"/>
            <end position="452"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000924"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00024799"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO18174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="454" mass="51823" checksum="FE0547F3078AA295" modified="2015-11-11" version="1">MQHKVWCRAKYAGMSGVLGMPGVLPVMNKKAFEYALKAAIALNCKIGEFTNFDRKSYYYPDLPKNYQTSQNYYNLGVDGSMHIRVNGTMNRIRIHNVHLEEEAGKLIHSEESGADYSLVDFNRAGVPLLEIVSYPDMRNVDEVESYMQTLRKILLYTGVSDCKMQEGSLRFEASISLRKRGSEALGNRVEIKNLNSMKSVLKAIEYETKRQAASLDRGEAIERETRLWDEVNEKSARMRSKEEAQDYRYFPEPDLLPVLIDEKWLDAIKGTIPELPLAKKQRFMEGYKLSDYDTSLLVEEKILADFFEDGIKILDRPKAFCNWITNDLLREVNERKLDIQQLPIRPQQLASLVEIVEKGTISSTIAKEVFSEMIQTGRDPQVIIEEKKLTQISDQGFIETVIGKILSDNPAAIEDYKKGKKNALTFLVGQVMKETKGKANPKVVNELLQKKIDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUM3</accession>
    <name>A0A0M2UUM3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">tRNA pseudouridine synthase A</fullName>
            <ecNumber evidence="4">5.4.99.12</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">tRNA pseudouridine(38-40) synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">tRNA pseudouridylate synthase I</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">tRNA-uridine isomerase I</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">truA</name>
        <name evidence="9" type="ORF">BROFUL_02643</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4 7">
            <text>uridine(38/39/40) in tRNA = pseudouridine(38/39/40) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:22376"/>
            <dbReference type="Rhea" id="RHEA-COMP:10085"/>
            <dbReference type="Rhea" id="RHEA-COMP:10087"/>
            <dbReference type="ChEBI" id="CHEBI:65314"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="EC" id="5.4.99.12"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4 7">Belongs to the tRNA pseudouridine synthase TruA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.12" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18691">
        <property type="protein sequence ID" value="KKO18691"/>
        <property type="gene ID" value="BROFUL_02643"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3278"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106029">
        <property type="term" value="F:tRNA pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031119">
        <property type="term" value="P:tRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02570">
        <property type="entry name" value="PseudoU_synth_EcTruA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.660">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00171">
        <property type="entry name" value="TruA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001406">
        <property type="entry name" value="PsdUridine_synth_TruA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020097">
        <property type="entry name" value="PsdUridine_synth_TruA_a/b_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020095">
        <property type="entry name" value="PsdUridine_synth_TruA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020094">
        <property type="entry name" value="TruA/RsuA/RluB/E/F_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11142">
        <property type="entry name" value="PTHR11142"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01416">
        <property type="entry name" value="PseudoU_synth_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001430">
        <property type="entry name" value="tRNA_psdUrid_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00071">
        <property type="entry name" value="hisT_truA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4 7" id="KW-0413">Isomerase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4 7" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="PseudoU_synth_1" evidence="8">
        <location>
            <begin position="19"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="domain" description="PseudoU_synth_1" evidence="8">
        <location>
            <begin position="154"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="4 5">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4 6">
        <location>
            <position position="121"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009375"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR001430-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR001430-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="268" mass="30551" checksum="D1E6A4EF6285AE64" modified="2015-11-11" version="1">MSIILSNPYMPMRNIRLLIEYEGTRYAGWQWQKDQKTVQETLSRATEQVIREPVTLYGASRTDSGVHALGQAAHFKTLSAIPSERLVHAINFYLPHDITVKDAADVPESFHAQYDARSKIYRYTILNDWIRTSLNRNFCYVCGLLLNTDKMLDAAQYLTGTHDFTSFTTKAFQEKNRVRTIKRLEIARDGRYLSFTVEADGFLYNMVRTIVGTLIEIGRGKIPPEGIKDILAAKDRKFAGPTAPAKGLCLIEVKYKDDNRIVKQPVIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUU0</accession>
    <name>A0A0M2UUU0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01476</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000151">
        <property type="protein sequence ID" value="KKO19808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19808">
        <property type="protein sequence ID" value="KKO19808"/>
        <property type="gene ID" value="BROFUL_01476"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="241" mass="28419" checksum="7C648F94B5EF8517" modified="2015-11-11" version="1">MGKRTLLLNFIIDRLSNYKEPTRKGVPKGDPIGMSYSKYLICLVMLYNFPLKDIIKQAKDITRLADISYGLLRKWRTEPNFKEMYEKNCHDFTEYFITHFKEWHRSNKRELEVHFKDSLIADLSCNPLPHVDLRDFDDIPNYNQDILKTITSQLLDLINTDDLTMKMEVYLIFELMSKNKAARKASKRTLEALEKAEERIICKLKKSIIKSAIEIIQKPKLSEKDKKEITAVLYKLKTSYD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUU6</accession>
    <name>A0A0M2UUU6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Site-specific DNA-methyltransferase (adenine-specific)</fullName>
            <ecNumber evidence="3">2.1.1.72</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_01481</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 2'-deoxyadenosine in DNA + S-adenosyl-L-methionine = an N(6)-methyl-2'-deoxyadenosine in DNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:15197"/>
            <dbReference type="Rhea" id="RHEA-COMP:12418"/>
            <dbReference type="Rhea" id="RHEA-COMP:12419"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:90615"/>
            <dbReference type="ChEBI" id="CHEBI:90616"/>
            <dbReference type="EC" id="2.1.1.72"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the N(4)/N(6)-methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.72" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000151">
        <property type="protein sequence ID" value="KKO19813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19813">
        <property type="protein sequence ID" value="KKO19813"/>
        <property type="gene ID" value="BROFUL_01481"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009007">
        <property type="term" value="F:site-specific DNA-methyltransferase (adenine-specific) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1020.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023095">
        <property type="entry name" value="Ade_MeTrfase_dom_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012263">
        <property type="entry name" value="M_m6A_EcoRV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012327">
        <property type="entry name" value="MeTrfase_D12"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30481">
        <property type="entry name" value="PTHR30481"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02086">
        <property type="entry name" value="MethyltransfD12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000398">
        <property type="entry name" value="M_m6A_EcoRV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00505">
        <property type="entry name" value="D12N6MTFRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="5 7" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="274" mass="31649" checksum="393E6FE38E0DA180" modified="2015-11-11" version="1">MLLRSVTSRIGSKGYLTCWLLQHVPHHVCYLEPFAGGAKLFFAKERSQIEILNDKDERLVNLYRVIQNNEKRQRLIKLLNETPYSRSVFNHFRKTETQDDVEKAGRYFFLSKASFAGDVLRGGFAVPSITGRNPVISFRNATGGLDDIAKRLRNVCIENLPYAECIKRYDSPGTLVYADPPYWNAEHYYGKDSFSQEDHYRLAELLHGVKGKIMVSHYANELYDNLYAGWNRYEYQSFKGSHKSTGESKPKTVEVLYCNFEPVVRSRNLFNGYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUU8</accession>
    <name>A0A0M2UUU8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01694</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000176">
        <property type="protein sequence ID" value="KKO19587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19587">
        <property type="protein sequence ID" value="KKO19587"/>
        <property type="gene ID" value="BROFUL_01694"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011744">
        <property type="entry name" value="ATPase_gene1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032820">
        <property type="entry name" value="ATPase_put"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09527">
        <property type="entry name" value="ATPase_gene1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02230">
        <property type="entry name" value="ATPase_gene1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="30"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="63"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="92" mass="10550" checksum="AF2A3EF68D7DCCFC" modified="2015-11-11" version="1">MENKKFSRDIGKSAKELMNARKEKSDFWRYANLLGVGGWVFVIPIIGGAYLGRYLDKKTHGEGISWTITLIIIGIAVGIYNVWYLFIRKPQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV70</accession>
    <name>A0A0M2UV70_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01797</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000188">
        <property type="protein sequence ID" value="KKO19485.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19485">
        <property type="protein sequence ID" value="KKO19485"/>
        <property type="gene ID" value="BROFUL_01797"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19485.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="114" mass="12861" checksum="AECF67CEE2C26437" modified="2015-11-11" version="1">MASEKALAMTATMHFDGTLHVVIASEAKQSFTHKKRHLLKEVCEKTYKKKKFLYSNTIAQQGRNQFTVVKAGDCFGQDPRNDTGYAFDDIRYVVIASKAKQSFPRKQTVPSDKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVS3</accession>
    <name>A0A0M2UVS3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Chain A of ATP binding cassette transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">abca_2</name>
        <name evidence="3" type="ORF">BROFUL_01112</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20153.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20153">
        <property type="protein sequence ID" value="KKO20153"/>
        <property type="gene ID" value="BROFUL_01112"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="2">
        <location>
            <begin position="28"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="81"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20153.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="100" mass="10865" checksum="AB492A3A21674E7D" modified="2015-11-11" version="1">MENTGFEFMEILQVKNLIKTFDGIHAVDSLSFDIKKGTITALIGPNGSGKTTTFNLITGFLKPTAGKTSFKGRDITHMAPTKSLISASGGHSRRSDYSRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVX2</accession>
    <name>A0A0M2UVX2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02183</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000215">
        <property type="protein sequence ID" value="KKO19111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19111">
        <property type="protein sequence ID" value="KKO19111"/>
        <property type="gene ID" value="BROFUL_02183"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2723"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd16377">
        <property type="entry name" value="23S_rRNA_IVP_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1440.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012657">
        <property type="entry name" value="23S_rRNA-intervening_sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036583">
        <property type="entry name" value="23S_rRNA_IVS_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38471">
        <property type="entry name" value="PTHR38471"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05635">
        <property type="entry name" value="23S_rRNA_IVP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158446">
        <property type="entry name" value="SSF158446"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02436">
        <property type="entry name" value="TIGR02436"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="120" mass="14347" checksum="4D2842059C8825F7" modified="2015-11-11" version="1">MRDLEVYQLALEAAMEIFEISRGFPKEEIYSLTDQIRRSSRSVCVNLAEGWRRRRYKAVFVNKLTDAEQEAAETQTWLEFTLRCKYINNEMFKMLDEKYEHIFAKLITMERKADTFCKAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVZ4</accession>
    <name>A0A0M2UVZ4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01084</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20233.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20233">
        <property type="protein sequence ID" value="KKO20233"/>
        <property type="gene ID" value="BROFUL_01084"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20233.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="485" mass="53169" checksum="FE87876738BB350C" modified="2015-11-11" version="1">MPVSPVSPPPVQAGAITSLFKEEKSWDWNLPEEFPMAQAASLQQQKTVSKSMDMPPKTTGLPMVPNYVYKISKEGLIQKILETSQSFILGMSLDAHDNLYVVTGNTAGLYKISGDEGTSSLARVEEVQALCCLSTGKNELYFGTGNVGRVYKISPSFMNGGSFISNVLDTAAPSNWGCISWAGIQPEGTELILSTRSGNGEKPDATWSGWSAPYAINGERIASPPARFIQYKALLQTRNSDATPLLSMVSLSYLPKNEPPRIVSFVVEKESSPVSQKPPEAKTDGKIETIHQGTAGQKPHHQIAQKNIQWEVEDPNNDTLQLTMYYRGMEEKMWKVIDKNLQKKGSFAWDTLRLPDGKYQVRLIASDDPDNPPETACNAEKTIEPVVIDNTKPDVRLVNAVAGTGGRYVVSGVAKDEYSKLVKVQYTVDGQEWVSAYPVDGVFDSPDESFQITTKPLMPGDYTLIVNAFDSEGNIGIGKVLFEVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW04</accession>
    <name>A0A0M2UW04_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Flagellar hook-associated protein 1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">flgK</name>
        <name evidence="9" type="ORF">BROFUL_02129</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Bacterial flagellum</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the flagella basal body rod proteins family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19146">
        <property type="protein sequence ID" value="KKO19146"/>
        <property type="gene ID" value="BROFUL_02129"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2656"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009424">
        <property type="term" value="C:bacterial-type flagellum hook"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005198">
        <property type="term" value="F:structural molecule activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044780">
        <property type="term" value="P:bacterial-type flagellum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001444">
        <property type="entry name" value="Flag_bb_rod_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010930">
        <property type="entry name" value="Flg_bb/hook_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002371">
        <property type="entry name" value="FlgK"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30033">
        <property type="entry name" value="PTHR30033"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00460">
        <property type="entry name" value="Flg_bb_rod"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06429">
        <property type="entry name" value="Flg_bbr_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01005">
        <property type="entry name" value="FLGHOOKAP1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02492">
        <property type="entry name" value="flgK_ends"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="9" id="KW-0966">Cell projection</keyword>
    <keyword evidence="9" id="KW-0969">Cilium</keyword>
    <keyword evidence="9" id="KW-0282">Flagellum</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0964">Secreted</keyword>
    <feature type="domain" description="Flg_bb_rod" evidence="7">
        <location>
            <begin position="5"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="domain" description="Flg_bbr_C" evidence="8">
        <location>
            <begin position="589"/>
            <end position="649"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00016244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF06429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="653" mass="69601" checksum="DDBD333EBF2F3F98" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW19</accession>
    <name>A0A0M2UW19_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative glutamate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01241</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glutamate synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000135">
        <property type="protein sequence ID" value="KKO20042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20042">
        <property type="protein sequence ID" value="KKO20042"/>
        <property type="gene ID" value="BROFUL_01241"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1538"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015930">
        <property type="term" value="F:glutamate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006537">
        <property type="term" value="P:glutamate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02808">
        <property type="entry name" value="GltS_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002932">
        <property type="entry name" value="Glu_synthdom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01645">
        <property type="entry name" value="Glu_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glu_synthase" evidence="3">
        <location>
            <begin position="278"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="534"/>
            <end position="557"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="543"/>
            <end position="557"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="557" mass="60472" checksum="F11E0ABB5632CB10" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW45</accession>
    <name>A0A0M2UW45_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Sigma 54 formate hydrogen lyase transcriptional activator FlhA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">fhlA</name>
        <name evidence="3" type="ORF">BROFUL_01491</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000153">
        <property type="protein sequence ID" value="KKO19795.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19795">
        <property type="protein sequence ID" value="KKO19795"/>
        <property type="gene ID" value="BROFUL_01491"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025662">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025943">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025944">
        <property type="entry name" value="Sigma_54_int_dom_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13185">
        <property type="entry name" value="GAF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00158">
        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00065">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00675">
        <property type="entry name" value="SIGMA54_INTERACT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00676">
        <property type="entry name" value="SIGMA54_INTERACT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00688">
        <property type="entry name" value="SIGMA54_INTERACT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="2">
        <location>
            <begin position="222"/>
            <end position="451"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19795.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="532" mass="60447" checksum="39C21A78824FF5E8" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW62</accession>
    <name>A0A0M2UW62_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Protease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02571</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000238">
        <property type="protein sequence ID" value="KKO18739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18739">
        <property type="protein sequence ID" value="KKO18739"/>
        <property type="gene ID" value="BROFUL_02571"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041489">
        <property type="entry name" value="PDZ_6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001940">
        <property type="entry name" value="Peptidase_S1C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13180">
        <property type="entry name" value="PDZ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17820">
        <property type="entry name" value="PDZ_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00834">
        <property type="entry name" value="PROTEASES2C"/>
    </dbReference>
    <dbReference type="SMART" id="SM00228">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="SSF50156"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="SSF50494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50106">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 5" id="KW-0645">Protease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PDZ" evidence="4">
        <location>
            <begin position="403"/>
            <end position="482"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="71"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="503" mass="54676" checksum="8C16B682BA228ADA" modified="2015-11-11" version="1">MKRLRGLIFWWTFLSILSLWYVHLVFAARSDDISRLKQELLDLEKVTNPLIQTFRKVSQLVSPSVVSLSTEKKASQNEKNVPEPQPPSQNFPPKHEPHADSLPKKGLGSGIIIDERGYILTNNHVITGFAEDEITVATHNGEQYNHVKIVGVDPNTDIAVIKIEGEDFTPITFGNSEEVQVGDWVIAIGSPFGYQQTVSAGIISAKGRTHVIPFELPFIYEDFFQTDAAINPGNSGGPLVNLRGEVIGVNTAIATRSGGFQGVGFAISAGIVKETVDNIMATGTVVRGYLGVGTHDINNELAQILGLKDKKEIARRFSLLSEKGAFVLEVWSDTPASKAGISPGDIICEIGGKKIENTIDLQHAIRRAKVNAVVIVKVVRNGAESALEVLVEPQPQDLGGKTYVAIRKLDEPTKFSLGLVVNDLNPEVAKSLGLEGEHGVLVVDVETNSPSERAGIQPGDLITKVGTKEVRSVLEFMTLMEAFIETNMPVSIFVKDKGFITLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW84</accession>
    <name>A0A0M2UW84_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 11">Phosphate acetyltransferase</fullName>
            <ecNumber evidence="5 11">2.3.1.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10 11">Phosphotransacetylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="primary">pta</name>
        <name evidence="14" type="ORF">BROFUL_02070</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Involved in acetate metabolism.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>acetyl-CoA + phosphate = acetyl phosphate + CoA</text>
            <dbReference type="Rhea" id="RHEA:19521"/>
            <dbReference type="ChEBI" id="CHEBI:22191"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="EC" id="2.3.1.8"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 11">Metabolic intermediate biosynthesis; acetyl-CoA biosynthesis; acetyl-CoA from acetate: step 2/2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="11">The N-terminal region seems to be important for proper quaternary structure. The C-terminal region contains the substrate-binding site.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 11">In the C-terminal section; belongs to the phosphate acetyltransferase and butyryltransferase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 11">In the N-terminal section; belongs to the CobB/CobQ family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.8" evidence="5 11"/>
    <dbReference type="EMBL" id="LAQJ01000208">
        <property type="protein sequence ID" value="KKO19226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19226">
        <property type="protein sequence ID" value="KKO19226"/>
        <property type="gene ID" value="BROFUL_02070"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2580"/>
    <dbReference type="UniPathway" id="UPA00340">
        <property type="reaction ID" value="UER00459"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008959">
        <property type="term" value="F:phosphate acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006085">
        <property type="term" value="P:acetyl-CoA biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1390.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10750">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10950">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010766">
        <property type="entry name" value="DRTGG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016475">
        <property type="entry name" value="P-Actrans_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004614">
        <property type="entry name" value="P_AcTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042113">
        <property type="entry name" value="P_AcTrfase_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042112">
        <property type="entry name" value="P_AcTrfase_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002505">
        <property type="entry name" value="PTA_PTB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028979">
        <property type="entry name" value="Ser_kin/Pase_Hpr-like_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07085">
        <property type="entry name" value="DRTGG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01515">
        <property type="entry name" value="PTA_PTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006107">
        <property type="entry name" value="PhpActrans_proteobac"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75138">
        <property type="entry name" value="SSF75138"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00651">
        <property type="entry name" value="pta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 11" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7 11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DRTGG" evidence="13">
        <location>
            <begin position="213"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="domain" description="PTA_PTB" evidence="12">
        <location>
            <begin position="372"/>
            <end position="689"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00021528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00031108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRNR" id="PIRNR006107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF01515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF07085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KKO19226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="699" mass="76249" checksum="376E491DD75EF91B" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW88</accession>
    <name>A0A0M2UW88_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02031</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19231.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19231">
        <property type="protein sequence ID" value="KKO19231"/>
        <property type="gene ID" value="BROFUL_02031"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19231.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="115" mass="13367" checksum="752983664406C939" modified="2015-11-11" version="1">MDVYEEVKQALQDIVVPELKALQVEIRRLDEKIDSLDERLNARIDSLDKSVNAHIDSLDKGLNARMDSLKAEITTEIKRLDEKIDIAIQIRERLAAIEGRFEERERRRSPAKTKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW90</accession>
    <name>A0A0M2UW90_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RNA-metabolising metallo-beta-lactamase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00936</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000115">
        <property type="protein sequence ID" value="KKO20338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20338">
        <property type="protein sequence ID" value="KKO20338"/>
        <property type="gene ID" value="BROFUL_00936"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1182"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022712">
        <property type="entry name" value="Beta_Casp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011108">
        <property type="entry name" value="RMMBL"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10996">
        <property type="entry name" value="Beta-Casp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07521">
        <property type="entry name" value="RMMBL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01027">
        <property type="entry name" value="Beta-Casp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="13"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="domain" description="Beta-Casp" evidence="2">
        <location>
            <begin position="253"/>
            <end position="378"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM01027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="463" mass="51644" checksum="B1E8978987822DA8" modified="2015-11-11" version="1">MKITFFGAAKTVTGSCYGIHANATNILVDCGFFQGTKDNEQKNSSPFPFRPSEIQYVLLTHAHLDHSGLIPKLVKEGFRGKILATHATVDLCGVVLLDSAHIQERDAEWENERHMRAGRPLVSPLYTVQEAADSIAYFQGISYGETRELGDGFKVRFRDAGHILGSAIVELWVRDDTMEKKLVFSGDLGQKNVPLVKNPTFIEEGDYVFIESTYGNRRHKGIEETVEEFNRVIAESVKRGGNVIIPAFAVGRTQEVLYLLNQMARAGKINQLRVFVDSPMALQATRITIKHPECLDEETLALVKRGGFSRGALELTFTESAEDSKSINKLKSSAIIISASGMCEAGRIRHHLKHNLWRPECSVIFVGFQAAGTLGRRIVEGAKIVSIFGEEIAVKASIYTIGGLSAHADRDELLDWLGKFKKRPQRVFVMHGEENTAVDFAKTIHDRLRYDAYVPDMLEHIQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWC4</accession>
    <name>A0A0M2UWC4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01393</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000145">
        <property type="protein sequence ID" value="KKO19880.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19880">
        <property type="protein sequence ID" value="KKO19880"/>
        <property type="gene ID" value="BROFUL_01393"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0129">CBS domain</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CBS" evidence="2">
        <location>
            <begin position="12"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="2">
        <location>
            <begin position="107"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19880.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="200" mass="22227" checksum="41C8929EF4741055" modified="2015-11-11" version="1">MATYKFVARDLMTEKVVCVTPETSIHDLIKLLVKNQITGAPVVDREGALVGVVSKTDVVEYDGKTRKKTGESTNKSFYHETNGKLKKELDKLLKTKTFGKALVKDIMTTRVITAQTDDSIDRLAKIMHDKKIHRVVIREGEQVVGVVSTLDILHAVSTMGYGSSAFVTEEAILDLQERLEAAEKSIQSLRDILDTIHGEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWD4</accession>
    <name>A0A0M2UWD4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02014</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000204">
        <property type="protein sequence ID" value="KKO19276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19276">
        <property type="protein sequence ID" value="KKO19276"/>
        <property type="gene ID" value="BROFUL_02014"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003423">
        <property type="entry name" value="OMP_efflux"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02321">
        <property type="entry name" value="OEP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="226"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="531" mass="59786" checksum="0F9E8157885E350D" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWD6</accession>
    <name>A0A0M2UWD6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00904</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000109">
        <property type="protein sequence ID" value="KKO20383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20383">
        <property type="protein sequence ID" value="KKO20383"/>
        <property type="gene ID" value="BROFUL_00904"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007367">
        <property type="entry name" value="DUF433"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04255">
        <property type="entry name" value="DUF433"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="82" mass="9388" checksum="204850C077CFA9F7" modified="2015-11-11" version="1">MKEEELLSRITYNPLIFNGKPIIRGMRIAVEHVLGMLASGSTVEEVLEGYPFLENEDIQACLLYAYRIVAHERIEPALVREQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWG4</accession>
    <name>A0A0M2UWG4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative dihydropteroate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02442</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000232">
        <property type="protein sequence ID" value="KKO18849.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18849">
        <property type="protein sequence ID" value="KKO18849"/>
        <property type="gene ID" value="BROFUL_02442"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3035"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042558">
        <property type="term" value="P:pteridine-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011005">
        <property type="entry name" value="Dihydropteroate_synth-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000489">
        <property type="entry name" value="Pterin-binding_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00809">
        <property type="entry name" value="Pterin_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51717">
        <property type="entry name" value="SSF51717"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50972">
        <property type="entry name" value="PTERIN_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pterin-binding" evidence="1">
        <location>
            <begin position="1"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18849.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="261" mass="29162" checksum="BBE83249617FCE99" modified="2015-11-11" version="1">MISIGERINGMFKDVREAIKNKDPKAVRELAIKQTEAGASFLDVNVGTAAADPVEAMKWLIEVVQDTVKTPIAIDSQKFDVVKAGLSVAKNEILINSSKGDPEELDKFMSIAKEYNASLICLTMDKTGIPQDVERRMEFAMKIVEKAVEHEYELSKVYIDPILFPINVDQKQPALMFDIFNQIKMISDPPPHRNVGLSNFSQGTKEKRLLARVFLTMGISYGLDAAVMDVLDKDLMDAAITAEIIMNQHLYSDSYLTACRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWM2</accession>
    <name>A0A0M2UWM2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Ca(2+)/H(+) antiporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_01082</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Ca(+)/H(+) antiporter that extrudes calcium in exchange for external protons.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20232">
        <property type="protein sequence ID" value="KKO20232"/>
        <property type="gene ID" value="BROFUL_01082"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015369">
        <property type="term" value="F:calcium:proton antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1420.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004713">
        <property type="entry name" value="CaH_exchang"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004798">
        <property type="entry name" value="CAX-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004837">
        <property type="entry name" value="NaCa_Exmemb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044880">
        <property type="entry name" value="NCX_ion-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31503">
        <property type="entry name" value="PTHR31503"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01699">
        <property type="entry name" value="Na_Ca_ex"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00378">
        <property type="entry name" value="cax"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0050">Antiport</keyword>
    <keyword evidence="5" id="KW-0106">Calcium</keyword>
    <keyword evidence="5" id="KW-0109">Calcium transport</keyword>
    <keyword evidence="5" id="KW-0406">Ion transport</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="36"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="67"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="98"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="132"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="181"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="211"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="248"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="278"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="304"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="domain" description="Na_Ca_ex" evidence="6">
        <location>
            <begin position="2"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="domain" description="Na_Ca_ex" evidence="6">
        <location>
            <begin position="180"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU365028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="325" mass="34766" checksum="743AF58548150068" modified="2015-11-11" version="1">MVMTFILAAAALVPLAHFLGEATEVISDKTGEHLSGIINATFGNAAELVIAIVAIKSGLIDIVKYSLVGSIIGNILLILGLSLFVGGIKFGNLRLSPVITGTTTIHLSMAAMCFVVPSVFAKEDSVLALNKYSVGIAVVLLLVYFVGVFYSMVNRENKEASQVIHEDIEATAPKWSLRTSLIVLISATVGLVYMSEILVHQIEPLVEATHIPPAFVGLIILPLVGNVAEHSVAVGTAMKNKINLSLAIAAESSVQIALFVSPVCVLIAGLFGQNFNLIFNKIELITLAMSIGGTWLVVHDNKSNWWEGFSLLSFYLIIAITAYFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWR0</accession>
    <name>A0A0M2UWR0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ribosomal RNA small subunit methyltransferase H</fullName>
            <ecNumber evidence="6">2.1.1.199</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">16S rRNA m(4)C1402 methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">rRNA (cytosine-N(4)-)-methyltransferase RsmH</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rsmH</name>
        <name evidence="7" type="ORF">BROFUL_02337</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>cytidine(1402) in 16S rRNA + S-adenosyl-L-methionine = H(+) + N(4)-methylcytidine(1402) in 16S rRNA + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42928"/>
            <dbReference type="Rhea" id="RHEA-COMP:10286"/>
            <dbReference type="Rhea" id="RHEA-COMP:10287"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74506"/>
            <dbReference type="ChEBI" id="CHEBI:82748"/>
            <dbReference type="EC" id="2.1.1.199"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the methyltransferase superfamily. RsmH family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.199" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18944">
        <property type="protein sequence ID" value="KKO18944"/>
        <property type="gene ID" value="BROFUL_02337"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2903"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071424">
        <property type="term" value="F:rRNA (cytosine-N4-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070475">
        <property type="term" value="P:rRNA base methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01007">
        <property type="entry name" value="16SrRNA_methyltr_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002903">
        <property type="entry name" value="RsmH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023397">
        <property type="entry name" value="SAM-dep_MeTrfase_MraW_recog"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11265">
        <property type="entry name" value="PTHR11265"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01795">
        <property type="entry name" value="Methyltransf_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004486">
        <property type="entry name" value="MraW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81799">
        <property type="entry name" value="SSF81799"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00006">
        <property type="entry name" value="TIGR00006"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 6 7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="5 6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4 6 7" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="6">
        <location>
            <begin position="38"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="58"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="85"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="106"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="113"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010396"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="299" mass="33884" checksum="69629EE5DA5D4C61" modified="2015-11-11" version="1">MEYTADDRVHIPVLAEEVVDYLQPQSGHIILDGTVGSGGHAMRIMEKIQPDGLLIGVDKDMEILRIAKQTLSKTVGTFRLYHADYSEVNEVLRQAGVVKVDGVLLDLGASSMQFDQAERGFSFAKEGPLDMRMDRSGGRTARDLIRRLSERELEDVLKRYGEERWSRRIARAVQREEREAGITSTRQLAAVVERVVPRGKSKIHPATRVFQALRIAVNKELEGLEVFLDTIHNYMTTGARIAIISFHSLEDRVVKKKFVERANHGLFRILTRKPVIPSEAEMEKNIRSRSAKLRAAERI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWR7</accession>
    <name>A0A0M2UWR7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02342</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18949.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18949">
        <property type="protein sequence ID" value="KKO18949"/>
        <property type="gene ID" value="BROFUL_02342"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="31"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18949.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="95" mass="10761" checksum="4C6D70FC5CB00B5F" modified="2015-11-11" version="1">MMRFIGLLIAAAVAVWVYADAKKRGYRTPAAIGWMMGVFLLMIVVLPVYLIMRTRQGKQIEILTPCKYCGKYYEGTPLYCPNCGHKVGGYSFKEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWR9</accession>
    <name>A0A0M2UWR9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01292</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20020">
        <property type="protein sequence ID" value="KKO20020"/>
        <property type="gene ID" value="BROFUL_01292"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012440">
        <property type="entry name" value="DUF1641"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07849">
        <property type="entry name" value="DUF1641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="236" mass="26071" checksum="8D6EC76AE86ECBC7" modified="2015-11-11" version="1">MEYSKTNEPALQDNRDVHKIMELLTPLSVRIDSLERSLSTIDAFIKKLPAMLAITTDIADEFYRNAAASGIDIEERLKKSASLLVQLTDPKKIDALSHFMNTLDAMTPLLKQFEKVPDILAMIVDSLDELCKGTERSGIDFERIMGQGKDAVAQLNELIKSDGLKALMNSGILNPKSVNIVAQAGCVLAECKEDRPKKMGIVGLIKAFGNGDIQCALGFLINFCKRFGRLLKDKEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWT0</accession>
    <name>A0A0M2UWT0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01863</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000193">
        <property type="protein sequence ID" value="KKO19426.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19426">
        <property type="protein sequence ID" value="KKO19426"/>
        <property type="gene ID" value="BROFUL_01863"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19426.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="65" mass="7352" checksum="BE0BE344AA6DFD3B" modified="2015-11-11" version="1">MPELKVPISADEIIEAVKTMKKSDREAFVEDLLAITSPEYIQSIKEARADYKAGRTKSHKEIFKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWW7</accession>
    <name>A0A0M2UWW7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative heme protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01215</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000132">
        <property type="protein sequence ID" value="KKO20065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20065">
        <property type="protein sequence ID" value="KKO20065"/>
        <property type="gene ID" value="BROFUL_01215"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029467">
        <property type="entry name" value="Cyt_c7-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036280">
        <property type="entry name" value="Multihaem_cyt_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14522">
        <property type="entry name" value="Cytochrome_C7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48695">
        <property type="entry name" value="SSF48695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome_C7" evidence="2">
        <location>
            <begin position="242"/>
            <end position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14522"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="420" mass="46926" checksum="230954A65BB7279A" modified="2015-11-11" version="1">MFAEVKRLNKGTAIRLAIAAGIAMGMVVVVLLITITRPNTASFCAKCHNDVTFNNACKKPLSKDIACIECHTHKNEGVAHLAVEIKDEHCTAESCHPLSKLSAQAVKYKKSILFQHKTHLAKLPGNLTLKCTSCHAHISNEKHFETDTKTCDTCHFINTTRPLYAQNKKPISDCALCHGRIEKTKDIYGKTFRHEAYEKNEKTDCSDCHFNIIQGDGRVDERNCYQCHAEISDYSKRVPDVHAIHIVKHKVACTSCHDALTHGWVTPGNPAHGNDSAQQPGAAAQKVQELIMMGMGGTGIRGEPDPMYLATLNCSACHKDKERFAHIEPKVCNNCHEKGFDKILTEQMRFVTSRLRLLRSLLTQAKRCNSDAASQAIHEAEVNYHLIREDGSSGAHNIKYIKYLLDYSITNLRQILEQKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWX2</accession>
    <name>A0A0M2UWX2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00929</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000112">
        <property type="protein sequence ID" value="KKO20347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20347">
        <property type="protein sequence ID" value="KKO20347"/>
        <property type="gene ID" value="BROFUL_00929"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2310.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035093">
        <property type="entry name" value="RelE/ParE_toxin_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="81" mass="9833" checksum="6900F11534E8DB14" modified="2015-11-11" version="1">MKYKVIIRPEAENDLKEAFSWYEDKRLELGYDFLLQVDAGLKFIERNPEVHSFRWNIKEQENTSSKGFHTKLFILLKKKRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX15</accession>
    <name>A0A0M2UX15_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00873</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000106">
        <property type="protein sequence ID" value="KKO20402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20402">
        <property type="protein sequence ID" value="KKO20402"/>
        <property type="gene ID" value="BROFUL_00873"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.70.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011055">
        <property type="entry name" value="Dup_hybrid_motif"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51261">
        <property type="entry name" value="SSF51261"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="202" mass="23817" checksum="EB946A26AC98C21F" modified="2015-11-11" version="1">MKKSRFIEFLIRHNELDQSGFEEWVFYPGMLFHSQDKWWEDGGVRQRPHEGVDFCFYRDAAGQFHNLDKKTKIPVMYDGEIVNIQDDFLGKSLFLRHDISDNYGNRLYTMYGHTSPYRGAEVGRIFREGETIAAIADAERKNTQIASHLHISVAWLQKSFPHERLDWKTINDDRVVTLCDPLEFIERKYKVRRGVLWKKSGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX26</accession>
    <name>A0A0M2UX26_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Uroporphyrinogen-III C-methyltransferase</fullName>
            <ecNumber evidence="1">2.1.1.107</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_00847</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="6">Belongs to the precorrin methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.107" evidence="1"/>
    <dbReference type="EMBL" id="LAQJ01000105">
        <property type="protein sequence ID" value="KKO20422.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20422">
        <property type="protein sequence ID" value="KKO20422"/>
        <property type="gene ID" value="BROFUL_00847"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1068"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004851">
        <property type="term" value="F:uroporphyrin-III C-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004852">
        <property type="term" value="F:uroporphyrinogen-III synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019354">
        <property type="term" value="P:siroheme biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06578">
        <property type="entry name" value="HemD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd11642">
        <property type="entry name" value="SUMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10090">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036108">
        <property type="entry name" value="4pyrrol_syn_uPrphyn_synt_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003754">
        <property type="entry name" value="4pyrrol_synth_uPrphyn_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014776">
        <property type="entry name" value="4pyrrole_Mease_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006366">
        <property type="entry name" value="CobA/CysG_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003043">
        <property type="entry name" value="Uropor_MeTrfase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02602">
        <property type="entry name" value="HEM4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="SSF53790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69618">
        <property type="entry name" value="SSF69618"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01469">
        <property type="entry name" value="cobA_cysG_Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00839">
        <property type="entry name" value="SUMT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00840">
        <property type="entry name" value="SUMT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6 9" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="5" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 6 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TP_methylase" evidence="7">
        <location>
            <begin position="6"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="domain" description="HEM4" evidence="8">
        <location>
            <begin position="265"/>
            <end position="496"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02602"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20422.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="511" mass="56384" checksum="CEB8486D6A8A7B53" modified="2015-11-11" version="1">MKRNLVYLVGAGPGDPRLITVKGLECIKKADVIIYDYLVNADLLKVAKPDAEFIYVGKQGGAHTMEQDDINNLIVKKAMEDKIVTRLKGGDPYIFGRGGEEAIVLYENHIPFEVVPGITAAIATPSYAGIPVTHRDFTSTFGLITGHEDPTKDESSIDWSKISTGIGTLAFYMGIKNLPYITEQLMKHGRSKDTPVAVIRWGTTTQQKTVIGTLSTIVEKTREIKPPAITIVGEVVKLRDQLNWFESKPLFGKTIVVTRSREQASEFADKLCEYGARVIEFPTIEIAKPDTIQPLDAAINSIQSYDWLVFTSINGVDAFFQRLFELGKDIRDLKGLKVCAIGPATEDGIKKYYLRVNCRPPKFVAESVVEELKKVTTIKGERFLLPRADIARSFLPDELQKLGGKVTDLVAYKTIMAQPRNMNLVDKLRNGEVDIVTFTSSSTVRNFVEIIGKENLLALNSHVQYASIGPITTQTAEEMGLHIAIKADEYTIPGLVSAILENAAASSAEES</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX32</accession>
    <name>A0A0M2UX32_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00862</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000105">
        <property type="protein sequence ID" value="KKO20437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20437">
        <property type="protein sequence ID" value="KKO20437"/>
        <property type="gene ID" value="BROFUL_00862"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010298">
        <property type="entry name" value="DUF901"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34547">
        <property type="entry name" value="PTHR34547"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05991">
        <property type="entry name" value="NYN_YacP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="136"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="170"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="137"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="224" mass="25673" checksum="BA93E51114DC375F" modified="2015-11-11" version="1">MLIIIDGYNFIFTVPALERHVGINRIEPARDHIISLFSRYKEAKRYDVIVVFDGNYTQASLPKKQTYSGVNVIYSRSGISADTEIKNLTSLCQNPGDVHIVTYDNEIKRHVRKCGCHVIEPIAMYREIVEILTNGEKNISDEPEDKQTGPSEDDAKYWKGVFKDLTDDELKSCGRKTGMPKIRRQKAPASDKNEPPYKYQGPSADETQFWARVFKEAEKNEHQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX39</accession>
    <name>A0A0M2UX39_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Acetylornithine aminotransferase</fullName>
            <shortName evidence="2">ACOAT</shortName>
            <ecNumber evidence="2">2.6.1.11</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">argD</name>
        <name evidence="4" type="ORF">BROFUL_00664</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>2-oxoglutarate + N(2)-acetyl-L-ornithine = L-glutamate + N-acetyl-L-glutamate 5-semialdehyde</text>
            <dbReference type="Rhea" id="RHEA:18049"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29123"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57805"/>
            <dbReference type="EC" id="2.6.1.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
        <text evidence="2">Binds 1 pyridoxal phosphate per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 4/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="2">May also have succinyldiaminopimelate aminotransferase activity, thus carrying out the corresponding step in lysine biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.11" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000087">
        <property type="protein sequence ID" value="KKO20628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20628">
        <property type="protein sequence ID" value="KKO20628"/>
        <property type="gene ID" value="BROFUL_00664"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.843"/>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00109"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003992">
        <property type="term" value="F:N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00610">
        <property type="entry name" value="OAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01107">
        <property type="entry name" value="ArgD_aminotrans_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004636">
        <property type="entry name" value="AcOrn/SuccOrn_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000521">
        <property type="entry name" value="Transaminase_4ab_Lys_Orn"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00707">
        <property type="entry name" value="argD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00600">
        <property type="entry name" value="AA_TRANSFER_CLASS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2 4" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="2" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 2 3" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="2">
        <location>
            <begin position="105"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="2">
        <location>
            <begin position="220"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="138"/>
        </location>
        <ligand>
            <name>N(2)-acetyl-L-ornithine</name>
            <dbReference type="ChEBI" id="CHEBI:57805"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="277"/>
        </location>
        <ligand>
            <name>N(2)-acetyl-L-ornithine</name>
            <dbReference type="ChEBI" id="CHEBI:57805"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="278"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="2">
        <location>
            <position position="249"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="393" mass="42968" checksum="F781E5F91ABD0359" modified="2015-11-11" version="1">MNTKEMKEIYDRYVIPNYIRNPILLVKGSGADIWDAEGKRYLDLFSGWAVSLLGHCHPNVVAAIQNQAAKLQHAPNIYYTEPQGLLAKHISEKSFGGQCFFCNSGAEANEAAIKLARIHNSDKGRYKIVTFLNSFHGRTLATVTATAQPKYHKGFAPLVEGFSYVPFNDLEALRKSVDDKTCAILLEPIQGEGGINIATKEFMQGIRKLCDEKGLLMILDEVQCGMGRSGKYFAYQHYDIEPDIMTLAKALGGGVALGAMTARKEIAKSLVPGSHASTFGGNPLACAAGVAVFETIEKEGLLSHVTTMGGYAADQLKALQKTRKIIHDVRGVGLMIGIELAVNGAEFIKRCIQAGLFLNCTHEKVIRFMPPLNVKKEHIDEGLNIINTVLSKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX63</accession>
    <name>A0A0M2UX63_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Ribosomal silencing factor RsfS</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">rsfS</name>
        <name evidence="3" type="ORF">BROFUL_01142</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Interacts with ribosomal protein L14 (rplN).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the Iojap/RsfS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000123">
        <property type="protein sequence ID" value="KKO20140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20140">
        <property type="protein sequence ID" value="KKO20140"/>
        <property type="gene ID" value="BROFUL_01142"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1413"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042256">
        <property type="term" value="P:mature ribosome assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090071">
        <property type="term" value="P:negative regulation of ribosome biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017148">
        <property type="term" value="P:negative regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01477">
        <property type="entry name" value="Iojap_RsfS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004394">
        <property type="entry name" value="Iojap/RsfS/C7orf30"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21043">
        <property type="entry name" value="PTHR21043"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00090">
        <property type="entry name" value="rsfS_iojap_ybeB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0678">Repressor</keyword>
    <keyword evidence="2" id="KW-0810">Translation regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="133" mass="15299" checksum="FFF60552B8BA63BB" modified="2015-11-11" version="1">MKVLVKNRDRRLGGRETIESTEIAILCAQIADDKKAEDILVFDVRGLTVITDFFVLCSGINKRQLQGIAREIELKLHSYGIHGVGMEGYQDARWILMDYGDVIMHLFDKETRHFYDLELLWGDAPKLSWKANT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXA4</accession>
    <name>A0A0M2UXA4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00774</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000098">
        <property type="protein sequence ID" value="KKO20507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20507">
        <property type="protein sequence ID" value="KKO20507"/>
        <property type="gene ID" value="BROFUL_00774"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.980"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="268"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="5"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="312" mass="36720" checksum="49216515FC304C6B" modified="2015-11-11" version="1">MPIVSVIIPTHNRAELLCSAITSVLNQTFQDFEILVIDDASTDNTREVISRYRDTRIKYIHHEVNKGEAGSRNTGILHSHAEYIAFLDDDDEWLPEKLQLQIDLFNSCQQEIGVIYTGYLRVDWTKKKILKQTVPIKRGYIYNDMFIQNYVGIPSTIILRRKCFDLVGLFDGSLPYGTDYDMWIRLAKEFHFDYIREPLVKYCVHQERISSHLDARINGLEILLKRYNHLFAANSKRHSYYHSHIGMMYCSIGSIKKGRELLLKAIKIYPLGIRGYLCFVLFLLGKNNFRRVKKIIYFLRSTGFYFTHRDRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXE2</accession>
    <name>A0A0M2UXE2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02177</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000214">
        <property type="protein sequence ID" value="KKO19134.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19134">
        <property type="protein sequence ID" value="KKO19134"/>
        <property type="gene ID" value="BROFUL_02177"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="41"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19134.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="81" mass="8875" checksum="84BD9FF1F0EEEDF0" modified="2015-11-11" version="1">MKKRFMKFGGCLFALVLTTTIVVNSADAKGKKKPPKPVPEPISSVLFAAGGGAFVGLRYLRRKWKSKEAVCQHHEDKEGVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXK5</accession>
    <name>A0A0M2UXK5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aminotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00979</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000117">
        <property type="protein sequence ID" value="KKO20305.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20305">
        <property type="protein sequence ID" value="KKO20305"/>
        <property type="gene ID" value="BROFUL_00979"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="1">
        <location>
            <begin position="35"/>
            <end position="350"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20305.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="416" mass="46399" checksum="828F3AD4547F0EBB" modified="2015-11-11" version="1">MEITASKRLQSIGAYAFAEVDKEVEKLKSLGITPIDFGVGDPTVPTPDVVRKATQKGLTNRKSSGYPSYIGAPEFRQSIAQWIHKRFGIQMDPATEISSTIGSKEAVFNFPEGIVNPGDSVIIPTPGYPPYTRGTLFAEGIPYYVPLLAENKFLIDLKSIPEEVCKNTKIMWINYPNSPSGAVAPLSYLKEVVEFGKRHNIIIASDEAYSEIYFGEPPHSILEVTKEGVIVFNSFSKRSAMTCYRVGWVAGDKRIVDIFKKVKTNIDSGTATFIQDGAIAALSDETHVEKMKAEYRIKRDLLVDAFRRIKLPDCTPEATIYLWQKVPEGMTSVSFAQKLLSPEIAIVTTPGAWISDKTETGLNPGEGMYGSPWCPVLKTPEKQPGESKRYYQGSCKKNIYRRERRDILKVLIKCEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXR0</accession>
    <name>A0A0M2UXR0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glutamine amidotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00917</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000110">
        <property type="protein sequence ID" value="KKO20360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20360">
        <property type="protein sequence ID" value="KKO20360"/>
        <property type="gene ID" value="BROFUL_00917"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01743">
        <property type="entry name" value="GATase1_Anthranilate_Synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006221">
        <property type="entry name" value="TrpG/PapA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00566">
        <property type="entry name" value="trpG_papA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GATase" evidence="1">
        <location>
            <begin position="4"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20360.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="187" mass="20916" checksum="A1FC8DE46C183B88" modified="2015-11-11" version="1">MVLIIDNYDSFTYNLVQQIGAFGVKMEVFRNDKISLDEIARRHPDHIIISPGPCTPKEAGISNDIIKQFTGKIPILGVCLGHQCIAHTYGADVVRARRLMHGKTSLIKHDSKTIYRGLSNPFEATRYHSLIVKEGSLPDCLEVTARADDDEIMGIRHKECSLEGVQFHPESFLTAEGPKLLKNFLSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXU8</accession>
    <name>A0A0M2UXU8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Cytochrome c peroxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_00866</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
        <text evidence="6">Binds 2 heme groups.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="6">Binds 2 heme groups per subunit.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000106">
        <property type="protein sequence ID" value="KKO20395.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20395">
        <property type="protein sequence ID" value="KKO20395"/>
        <property type="gene ID" value="BROFUL_00866"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1095"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004852">
        <property type="entry name" value="Di-haem_cyt_c_peroxidsae"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026259">
        <property type="entry name" value="MauG/Cytc_peroxidase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03150">
        <property type="entry name" value="CCP_MauG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000294">
        <property type="entry name" value="Cytochrome-c_peroxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 6 8" id="KW-0349">Heme</keyword>
    <keyword evidence="5 7 8" id="KW-0408">Iron</keyword>
    <keyword evidence="3 7 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-0574">Periplasm</keyword>
    <keyword evidence="10" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cytochrome c" evidence="9">
        <location>
            <begin position="47"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="9">
        <location>
            <begin position="200"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="binding site" description="covalent" evidence="6">
        <location>
            <position position="69"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" description="covalent" evidence="6">
        <location>
            <position position="72"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="7">
        <location>
            <position position="73"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>1</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" description="covalent" evidence="6">
        <location>
            <position position="215"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" description="covalent" evidence="6">
        <location>
            <position position="218"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="7">
        <location>
            <position position="219"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>2</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000294-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000294-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO20395.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="363" mass="39700" checksum="766ABD0C17D7C0A4" modified="2015-11-11" version="1">MHVAAFCVFYLLQPSAFSDPKGDSYHLPLPSGVLEPIIPEDNPLTMEKIALGKELFFDKRLSADDTVSCATCHDPEKGFADGKAIAVGIKERKGTRNSPTVLNAAFFDTQFWDGRAMTLEEQAKQPIINPKEMGMPSHDALVEKISGIPEYKTAFQAVFGTEKITIDLIVMAIASFERTLITFNTPFDRFIAGKGDAISASAQRGWKLFQGKARCVTCHEFNVSYPFFTNNKFHNVGVAMKGKDFESLARKAAGSGADPSALAQEEASSELGHYLVTKEPKDIGAFKTSGLRNIALTAPYMHDGSELTLESVVEFYDKGGIPNPNLDGGIRPLNLTEDEKKDLVEFMKSLTSDDLPESGITVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXV5</accession>
    <name>A0A0M2UXV5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01959</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19299.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19299">
        <property type="protein sequence ID" value="KKO19299"/>
        <property type="gene ID" value="BROFUL_01959"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19299.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="137" mass="15730" checksum="D08428AB8E673BE6" modified="2015-11-11" version="1">METFLERYDSKIGGVISTFDRMIFKGHILLSFFQKGNRHHYLFQEKVLFKDFGKYAKKVSGEIKDKARELSDKEGRPLIPLDSSRISKEDIARKVQKEEGIKEGLICVITMVERCVSFDTKGTPPISKRSLLKNNSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXW3</accession>
    <name>A0A0M2UXW3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">LysM domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00881</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000106">
        <property type="protein sequence ID" value="KKO20410.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20410">
        <property type="protein sequence ID" value="KKO20410"/>
        <property type="gene ID" value="BROFUL_00881"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1113"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00118">
        <property type="entry name" value="LysM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd16913">
        <property type="entry name" value="YkuD_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005490">
        <property type="entry name" value="LD_TPept_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018392">
        <property type="entry name" value="LysM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036779">
        <property type="entry name" value="LysM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038063">
        <property type="entry name" value="Transpep_catalytic_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01476">
        <property type="entry name" value="LysM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03734">
        <property type="entry name" value="YkuD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00257">
        <property type="entry name" value="LysM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141523">
        <property type="entry name" value="SSF141523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54106">
        <property type="entry name" value="SSF54106"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51782">
        <property type="entry name" value="LYSM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="LysM" evidence="3">
        <location>
            <begin position="138"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20410.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="312" mass="35568" checksum="0B5D3232CF8B0265" modified="2015-11-11" version="1">MMGVVCMINTSTHAGYYDDRVFTAQNQEMPLSLIKQEDDVVIYKKDIIVRSDELRAVQKKDAEEFKAIEKVASKRADIPSLAMVDKYLKDGKKYEARNLLSDLFIHGTIPEKQKEIKDQLDKLNEEIIFSPAPYPDAVMYTVQPGDALARIAKRFNTNYELIMKTNGKASNRLSIGDQLKILTGKTKILISKRDFTLVLLLNDKYVKQYRIATGRNNKTPIGMFEVKNKMKEPVWYSPDGGVFPYGHQENILGTRWIGFKDKPNLHGYGIHGTTQPETIGTESSNGCIRMLNRDVEELYDFVTSDTEIVIQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXZ2</accession>
    <name>A0A0M2UXZ2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">CRISPR-associated protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_01438</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the CRISPR-associated endoribonuclease Cas2 protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000147">
        <property type="protein sequence ID" value="KKO19836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19836">
        <property type="protein sequence ID" value="KKO19836"/>
        <property type="gene ID" value="BROFUL_01438"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004521">
        <property type="term" value="F:endoribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043571">
        <property type="term" value="P:maintenance of CRISPR repeat elements"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09725">
        <property type="entry name" value="Cas2_I_II_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021127">
        <property type="entry name" value="CRISPR_associated_Cas2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019199">
        <property type="entry name" value="Virulence_VapD/CRISPR_Cas2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09827">
        <property type="entry name" value="CRISPR_Cas2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01573">
        <property type="entry name" value="cas2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009959"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="67" mass="7704" checksum="1669214732D6F5D3" modified="2015-11-11" version="1">MKGISDYAVVYDITSDAKRERVDKVLKGFGFWVQKSVFECRLNKRGRDELIGRLEGLHIKTGFIVTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY60</accession>
    <name>A0A0M2UY60_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01376</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000142">
        <property type="protein sequence ID" value="KKO19901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19901">
        <property type="protein sequence ID" value="KKO19901"/>
        <property type="gene ID" value="BROFUL_01376"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19901.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="51" mass="5214" checksum="489F00EF5BC75FD4" modified="2015-11-11" version="1">MMLNGNVIANAIGTNRLGFASGSDNLMAAGTAMYEALAQSTASIRHFPAAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY95</accession>
    <name>A0A0M2UY95_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Big_5 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01859</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000191">
        <property type="protein sequence ID" value="KKO19444.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19444">
        <property type="protein sequence ID" value="KKO19444"/>
        <property type="gene ID" value="BROFUL_01859"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014755">
        <property type="entry name" value="Cu-Rt/internalin_Ig-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032812">
        <property type="entry name" value="SbsA_Ig"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13205">
        <property type="entry name" value="Big_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Big_5" evidence="2">
        <location>
            <begin position="5"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19444.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="81" mass="8045" checksum="259235058995AD56" modified="2015-11-11" version="1" fragment="single">LTTATFSLTDGVTPVTGAVSYTGTTATFTPTGSLSYATSYTATVTTGVTDLAGNALGANYVWGFTTGAAEPDVGLQAVRSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYA1</accession>
    <name>A0A0M2UYA1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00422</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000057">
        <property type="protein sequence ID" value="KKO20837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20837">
        <property type="protein sequence ID" value="KKO20837"/>
        <property type="gene ID" value="BROFUL_00422"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644084" evidence="1">
        <location>
            <begin position="24"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="185" mass="20606" checksum="AA42748FB71FCD61" modified="2015-11-11" version="1">MKRLLVTMVISLICLSTVRYAHAQQEQKFPLSNAPGNLSISETRKSEGTQQHISSYAFEYAAPFLCGIQTDQGNTRLARGCYLTSITIRNPNDTEVKYSKNLVLTYPSGEQTMGKGMPLGEDVLKAGDARDITGEEIQQGLFPNGFPASYLKGLFVIRSMESLDVPHSTKLQQSVRKTRLKPFWV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYB3</accession>
    <name>A0A0M2UYB3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF1858 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00678</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20560">
        <property type="protein sequence ID" value="KKO20560"/>
        <property type="gene ID" value="BROFUL_00678"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3910.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023883">
        <property type="entry name" value="CHP03980_redox-disulphide"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015077">
        <property type="entry name" value="DUF1858"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038062">
        <property type="entry name" value="ScdA-like_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08984">
        <property type="entry name" value="DUF1858"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140683">
        <property type="entry name" value="SSF140683"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03980">
        <property type="entry name" value="prismane_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1858" evidence="1">
        <location>
            <begin position="7"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="76" mass="8460" checksum="8E71D6BF1CD54541" modified="2015-11-11" version="1">MGNEILITKKMSTGEVTKKYPATKAVFTKYFGKGCFDCPSFGTEDINLACMMHNTDVDKFVKELNEAAQKETSKTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYQ1</accession>
    <name>A0A0M2UYQ1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">GTP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00561</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000077">
        <property type="protein sequence ID" value="KKO20725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20725">
        <property type="protein sequence ID" value="KKO20725"/>
        <property type="gene ID" value="BROFUL_00561"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.703"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03710">
        <property type="entry name" value="BipA_TypA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035651">
        <property type="entry name" value="BipA_V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035647">
        <property type="entry name" value="EFG_III/V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000640">
        <property type="entry name" value="EFG_V-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004161">
        <property type="entry name" value="EFTu-like_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031157">
        <property type="entry name" value="G_TR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006298">
        <property type="entry name" value="TypA_GTP-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42908:SF8">
        <property type="entry name" value="PTHR42908:SF8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00679">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03144">
        <property type="entry name" value="GTP_EFTU_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00838">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54980">
        <property type="entry name" value="SSF54980"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01394">
        <property type="entry name" value="TypA_BipA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00301">
        <property type="entry name" value="G_TR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="2">
        <location>
            <begin position="7"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="515" mass="57661" checksum="DA528F09E94695B0" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYQ3</accession>
    <name>A0A0M2UYQ3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative heptosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00534</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000075">
        <property type="protein sequence ID" value="KKO20735.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20735">
        <property type="protein sequence ID" value="KKO20735"/>
        <property type="gene ID" value="BROFUL_00534"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009103">
        <property type="term" value="P:lipopolysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03789">
        <property type="entry name" value="GT9_LPS_heptosyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002201">
        <property type="entry name" value="Glyco_trans_9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011910">
        <property type="entry name" value="RfaF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01075">
        <property type="entry name" value="Glyco_transf_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02195">
        <property type="entry name" value="heptsyl_trn_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20735.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="364" mass="41738" checksum="EE324A8AADEA5773" modified="2015-11-11" version="1">MEKRFDNLKNILIVRLGAMGDIIHVMPAVINLRRTFPDASLVWLVEDKAQCLVEALPGIDEVIVFPRKKWQTALRHPRKYFTVAAELRAFLRKLREREYDVALDFHGNFRSGLLAYLSNAKTRVGFSKGYCKEANYIFTNVRMKPHQKKMHRIEKYFSLLQGMGITVYYQRPEFSISDNDRRSVDDFISRHHLQEKPVAILHPGTSMFGKFKRWPPENYAMLADRLIKEMNYSVVFTWSEPEYNLVQQILSLMQYHATIACRTASVKQLIALLQRAHLFIGGDTGPTHLASCMGIPTIAIFGPKDPSLYAPYDDNAVVVRKDIPCSPCERRTCDHVTCVSSITPEDVFRAVLELTKAPLPFGVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYS7</accession>
    <name>A0A0M2UYS7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01186</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000126">
        <property type="protein sequence ID" value="KKO20111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20111">
        <property type="protein sequence ID" value="KKO20111"/>
        <property type="gene ID" value="BROFUL_01186"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045926">
        <property type="entry name" value="DUF6345"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19872">
        <property type="entry name" value="DUF6345"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="246" mass="27469" checksum="EFCF8A264C87D685" modified="2015-11-11" version="1">MERRLRGHEPSWWDDMGLAWYNEIANTAHSGAYAQDGQTIDGNVVDSLFTDTGLVNWGNDHNNIDVADAALIFMHGSESNDRWQGSVRVDEAGAGDCQTWQGDMRFGNTNLKFLHLSSCNSMDDNQWADRWWESFSGLHQVDGFHGFMWIGSDLVSDYEDFASDAFTATIADAWLDNMYHADISGTDDQCPVAYAVGVNSDDTWNRIGAERYNNVLSNPTSVGYWGTIYFENCDPANEDTIGTGID</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYW1</accession>
    <name>A0A0M2UYW1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Cytochrome c-type biogenesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">ccsB_1</name>
        <name evidence="8" type="ORF">BROFUL_00256</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000031">
        <property type="protein sequence ID" value="KKO21007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21007">
        <property type="protein sequence ID" value="KKO21007"/>
        <property type="gene ID" value="BROFUL_00256"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017004">
        <property type="term" value="P:cytochrome complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023494">
        <property type="entry name" value="Cyt_c_bgen_Ccs1/CcsB/ResB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007816">
        <property type="entry name" value="ResB-like_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31566">
        <property type="entry name" value="PTHR31566"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05140">
        <property type="entry name" value="ResB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0201">Cytochrome c-type biogenesis</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="468"/>
            <end position="486"/>
        </location>
    </feature>
    <feature type="domain" description="ResB" evidence="7">
        <location>
            <begin position="3"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="domain" description="ResB" evidence="7">
        <location>
            <begin position="401"/>
            <end position="449"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF05140"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO21007.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="500" mass="57097" checksum="F3358B71A55D783F" modified="2015-11-11" version="1">MQTGFILTHLSLVLILIGGVVKFQLGVKGGVNVYEGKTVNYFLTQLITRQGKLDYVKKDLPFSIALEDFILEKNEPKFQLVSYVKNKDRQKILEVKVGKRQRVPGSDYKVTIKDYVPDAELHQEPVNTSDTPDNPAIYVKLLGSDKVAAEGWLLAHDRNYYEDKKQNLRVEYIWLSSQEELEKTISSIETAHPKVSVMISEQGISYDYPMELNKNFKLEGTNYSLRMLQYVLNYGDRRPLGEQPTDNPAVQVEINGPEGSETRWVFEKFPDWDKMHPAKYKNMKITCSGIASGHMAKNTIRLFQSPEGKQVMVSIKDNRIISTIPWELEKKYPIADLNHQLMVSNYFPSFDFKREVIKKSDEVGMPAIFVEVEGPSGTVDDWLFSNNQYATWYTDNNLALVYESTGDSIKHFTSKLRIEENGQTVAEKTIRVNDPLTYKGYVIYQSSYDPEAGTFSGLQIVKDPGIPIVYAGFGALCFGVVFIFYIKPFLRKKQKQEVEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ67</accession>
    <name>A0A0M2UZ67_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">NfeD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00337</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000042">
        <property type="protein sequence ID" value="KKO20935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20935">
        <property type="protein sequence ID" value="KKO20935"/>
        <property type="gene ID" value="BROFUL_00337"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002810">
        <property type="entry name" value="NfeD-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01957">
        <property type="entry name" value="NfeD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="30"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="53"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="domain" description="NfeD" evidence="3">
        <location>
            <begin position="55"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01957"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="145" mass="15656" checksum="67D718634F8DB3D6" modified="2015-11-11" version="1">MEHIEWWHILVVAAIVCLILETLSHGLTGFAFAIAFASAAAAAYFGAQAKGQLLAAIISLAVSFFGLRPLFLCLLIKQTPATRTNLEALIGRRARVIEAIDTVTGGGRVQLDGDTWRASSLQKHEVGDWVVITDLDGVTVNVRKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZI3</accession>
    <name>A0A0M2UZI3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00269</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000031">
        <property type="protein sequence ID" value="KKO21020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21020">
        <property type="protein sequence ID" value="KKO21020"/>
        <property type="gene ID" value="BROFUL_00269"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="158" mass="18288" checksum="D8DA45E8CDEA0650" modified="2015-11-11" version="1">MARKAPIPYCSESDWQTLYEWVNSRSMECRLVERARIIKKLLAGEQVQKVARDIGTSQNTVIEWRKRFITSGIKGLYDLPRTGKPPKYDKEFRTRVLKTVELPSPKGQSKWDGPSLSRYLGASDDTVWRVLRKEGICLARQRSWCVSTTRSLGQKRLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZN7</accession>
    <name>A0A0M2UZN7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glyco_trans_2-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00207</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000025">
        <property type="protein sequence ID" value="KKO21070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21070">
        <property type="protein sequence ID" value="KKO21070"/>
        <property type="gene ID" value="BROFUL_00207"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.251"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="4"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="326" mass="38855" checksum="EB81897C67B4591F" modified="2015-11-11" version="1">MKVSIITPTYNRGNLIAHTLESVLNQSYHNIEHIVIDGSSTDNTVDVLERYKKKYHMTYLSRIDKGMYYAINDGISMATGDIIAYLNSDDLYFPWTVQKAVETFQSNRDLDMIYGDSMVWDFITNKIYLNIYAPHRRYWLPMGGVLCQPTVFLRRRVFDRVGYFNTEFKYLADCEFWNRINNHADLLISKVDEVMAIECNHGDTLRETMKNELSKDKNKIAFLYRKKHNNSGLTGWLKLVIYVQREVKIWEFVLRCYLKTNSKRMRWYNFLETYNVRFFFFNYIFCKLFHDRARFSRFSIEEKEKGSAGLCMDKFQNVIRPQPNPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZT5</accession>
    <name>A0A0M2UZT5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01275</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20004">
        <property type="protein sequence ID" value="KKO20004"/>
        <property type="gene ID" value="BROFUL_01275"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043504">
        <property type="entry name" value="Peptidase_S1_PA_chymotrypsin"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="SSF50494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="59"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="359" mass="40283" checksum="7C0EB62A067F2A2F" modified="2015-11-11" version="1">MRFRIKSDDADVCKPWTQIIEDSLGIASVSQRGKITTATTFFKQLLWEAFTQTSHTFKITAFLCLFFAISGLISYFYVQYVRLTKTAEKVRLLEIERSVAEHIIKTYSGGVCLIQGAFYFLDEETGEPLMMMGKGQRGIHEYTGTGFMVSVDGLILTNRHIAEPWWEMEMSPYIYREPTIQPKFEVFRAFFPGIKEPFSLKVEKISQEVDVALLRIDTRGAKIPVLELDVTGKVAIAGEPMMLLGYPAGVNAIFAKTDPAIVKQLFSLPFIELVQEISNWGLIRPLSTQGHLSDIMYNRIVYDAQTTAGGSGGPIFNNKGKVIGINYGIFPGFRGSNFGVPISYGLELIKTMSMKKKDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZV8</accession>
    <name>A0A0M2UZV8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01301</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20029.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20029">
        <property type="protein sequence ID" value="KKO20029"/>
        <property type="gene ID" value="BROFUL_01301"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20029.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="89" mass="10635" checksum="A9AE8AC9CA3F9732" modified="2015-11-11" version="1">MDQYSEKGYTEYQKKVIRNFYENKDLRLIQKLGELVSDMYLETNGKKRESGWKKIQKMLADLKVHPNEIEFLTKDKNLSVISKKLAEMF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZX1</accession>
    <name>A0A0M2UZX1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Carbon starvation protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_00131</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the peptide transporter carbon starvation (CstA) (TC 2.A.114) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000016">
        <property type="protein sequence ID" value="KKO21130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21130">
        <property type="protein sequence ID" value="KKO21130"/>
        <property type="gene ID" value="BROFUL_00131"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.163"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009267">
        <property type="term" value="P:cellular response to starvation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025299">
        <property type="entry name" value="CstA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003706">
        <property type="entry name" value="CstA_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02554">
        <property type="entry name" value="CstA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13722">
        <property type="entry name" value="CstA_5TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="34"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="86"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="117"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="158"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="189"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="218"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="254"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="287"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="324"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="364"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="452"/>
            <end position="473"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="494"/>
            <end position="514"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="526"/>
            <end position="547"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="554"/>
            <end position="572"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="592"/>
            <end position="612"/>
        </location>
    </feature>
    <feature type="domain" description="CstA" evidence="9">
        <location>
            <begin position="32"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="domain" description="CstA_5TM" evidence="10">
        <location>
            <begin position="452"/>
            <end position="572"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF13722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO21130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="670" mass="72122" checksum="B052F9990AA3ADC4" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZX4</accession>
    <name>A0A0M2UZX4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00136</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000016">
        <property type="protein sequence ID" value="KKO21135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21135">
        <property type="protein sequence ID" value="KKO21135"/>
        <property type="gene ID" value="BROFUL_00136"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="190" mass="22082" checksum="F7F1DFFABCC5D75F" modified="2015-11-11" version="1">MSPVFDSGELSLNTNFIIGGRIENYKENIRKRGCSGYFDFDKNAPVLIRFPTPMYMQKFLSKICSYLPHLSESSIRREFRHAFSMGTAHKNRELAEPELALIQKLVIIVKKRRLTVPSTLFLECTQPLSYLGSQMMVFFRPFLTFFFTPAEYDLLQGILEKREGIKRIIEELEKSDTHRKDAKVAEDDSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZX7</accession>
    <name>A0A0M2UZX7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">NADH dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_00755</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
        <text evidence="6">Binds 1 [2Fe-2S] cluster.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the complex I 24 kDa subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000096">
        <property type="protein sequence ID" value="KKO20511.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20511">
        <property type="protein sequence ID" value="KKO20511"/>
        <property type="gene ID" value="BROFUL_00755"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.955"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03064">
        <property type="entry name" value="TRX_Fd_NuoE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1590">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002023">
        <property type="entry name" value="NuoE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042128">
        <property type="entry name" value="NuoE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041921">
        <property type="entry name" value="NuoE_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000216">
        <property type="entry name" value="NADH_DH_24kDa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01099">
        <property type="entry name" value="COMPLEX1_24K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="4 6" id="KW-0408">Iron</keyword>
    <keyword evidence="5 6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="6">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="97"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="133"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="137"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000216-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20511.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="165" mass="18620" checksum="DD468EEDEC5BBA1D" modified="2015-11-11" version="1">MMHKTVPVRKESKPVVDATKCKAILAQYPNATSADLIPVLQQMQDAYGYLPQNILEEITATTRIPLSKIYGVITFYSQFSLEPRGKHTIKVCTGTACHIKGAPDIKKKITEVLHIHEGETTKDYKFTYEPVACLGTCFLAPVMMINERYYGKLTTEKTEQILKSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0K4</accession>
    <name>A0A0M2V0K4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CLP1_P domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01079</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20229">
        <property type="protein sequence ID" value="KKO20229"/>
        <property type="gene ID" value="BROFUL_01079"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051731">
        <property type="term" value="F:polynucleotide 5'-hydroxyl-kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045116">
        <property type="entry name" value="Clp1/Grc3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032319">
        <property type="entry name" value="CLP1_P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12755">
        <property type="entry name" value="PTHR12755"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16575">
        <property type="entry name" value="CLP1_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CLP1_P" evidence="1">
        <location>
            <begin position="28"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF16575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="319" mass="35572" checksum="D83D9D2A9FAFE8AE" modified="2015-11-11" version="1">MNTIIVPREWRRVAEEIKHGAKTGIILGRTDSGKSTLCKYLIQTWTASRVRVGYVDSDLGQSTIGFPTTVSLKIYDTPHHPRNDANPPYLQFVGNTAPDGFLVQTLHAVKMMADKSRQQGAEITLIDTAGFIDGPVARILKQHKIEMLRPQWILALQAGDEMEHLLKGYEKMGWQVIRLTCSEHVAARSQAERQKYRTEKYKAYFKHARLTDCSLHRVVFPSCILGTGERIDPSVLPNKLCIHAPNRPYLEKCGNELLIIADAADALIPVSPLKESFGVASVILIERDGLKDLLVGLNDDNNCTWDLAPSLIPTLLPAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0M2</accession>
    <name>A0A0M2V0M2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01020</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000120">
        <property type="protein sequence ID" value="KKO20254.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20254">
        <property type="protein sequence ID" value="KKO20254"/>
        <property type="gene ID" value="BROFUL_01020"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023917">
        <property type="entry name" value="Bifunctiontional_GlmU_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13562">
        <property type="entry name" value="NTP_transf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03991">
        <property type="entry name" value="alt_bact_glmU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20254.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="414" mass="46853" checksum="96E5349894887111" modified="2015-11-11" version="1">MQYIYVFEDNQYSKLFPLVHTRTAFELRCGLFSPLERIARYYPHAIITLFCRDFLSDVLRERYPYRINSLHTTDDTCLFLNGRALLSFPISTEGPEEMGIQDSTLVYARLAGKNAKRLSPEMFLADGPVGFLQNSVRSLNIQVPVIHYFWDLVKYNKSQIEKDYLMFVKEGAILGEVYDGVYFVNKGQIYIGQESRIKPGCVFDAEEGPIYVGNYVTIAPNTTVEGPAFIGDHAVVQSNTRIREGSNIGEACKVGGEIVNTIFHNYTNKQHDGFVGDSYIGSWVNMGADTVNSNLLNTYGNIKVEIEGDVMDTNHMFLGMVMGDHTKTAINTTIQTGSIFGFSCNLITTSYPPKYLPSFTWYSHHGMVVYNLEKALLVAKIAMKRRGKEMTSAEAQLFRNVFEFTKKERKSLSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1D5</accession>
    <name>A0A0M2V1D5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00301</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000035">
        <property type="protein sequence ID" value="KKO20966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20966">
        <property type="protein sequence ID" value="KKO20966"/>
        <property type="gene ID" value="BROFUL_00301"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.365"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004177">
        <property type="term" value="F:aminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008235">
        <property type="term" value="F:metalloexopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045175">
        <property type="entry name" value="M28_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003137">
        <property type="entry name" value="PA_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011659">
        <property type="entry name" value="PD40"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007484">
        <property type="entry name" value="Peptidase_M28"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12147">
        <property type="entry name" value="PTHR12147"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02225">
        <property type="entry name" value="PA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07676">
        <property type="entry name" value="PD40"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13180">
        <property type="entry name" value="PDZ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04389">
        <property type="entry name" value="Peptidase_M28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00228">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="SSF50156"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50106">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PDZ" evidence="3">
        <location>
            <begin position="925"/>
            <end position="983"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="360"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="391"/>
            <end position="407"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="996" mass="110159" checksum="9702CB6B70F36863" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2S7</accession>
    <name>A0A0M2V2S7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methylmalonyl-CoA epimerase</fullName>
            <ecNumber evidence="2">5.1.99.1</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00277</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.1.99.1" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000032">
        <property type="protein sequence ID" value="KKO20994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20994">
        <property type="protein sequence ID" value="KKO20994"/>
        <property type="gene ID" value="BROFUL_00277"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004493">
        <property type="term" value="F:methylmalonyl-CoA epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="2"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="126" mass="14642" checksum="E65DC0FFE963E73F" modified="2015-11-11" version="1">MELNHIGITNKNELQAIQFYQDFLGLEKTREMLLAPELSGQLFSLFQEIKVLVFEKPGLKVEVFISDFQHANPNFIHFGLMLDNFTEITEKAQRSHVEIIVGKHKEKTVYFLKDFSGNLIEIKQKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V3K1</accession>
    <name>A0A0M2V3K1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Putative cytochrome</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_00034</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000006">
        <property type="protein sequence ID" value="KKO21239.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21239">
        <property type="protein sequence ID" value="KKO21239"/>
        <property type="gene ID" value="BROFUL_00034"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13442">
        <property type="entry name" value="Cytochrome_CBB3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0349">Heme</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cytochrome c" evidence="5">
        <location>
            <begin position="30"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO21239.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="116" mass="12481" checksum="57C481CBB96C14AB" modified="2015-11-11" version="1">MSKTGIFTGVSVAVMAGAIAYFSGISVSRAADIDATKVYMTHCKTCHGENGHPTDLGTGLGAREFANAEWQAKTTDEQIIKQINNGTPEKMMPFKEKLSQDEIKALVSVIRGFGKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPA8</accession>
    <name>A0A0M2UPA8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03335</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000306">
        <property type="protein sequence ID" value="KKO17963.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17963">
        <property type="protein sequence ID" value="KKO17963"/>
        <property type="gene ID" value="BROFUL_03335"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17963.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="64" mass="7482" checksum="C9F5155FB49E4D20" modified="2015-11-11" version="1">MRRRGSGSCLVVYRVVNTATIVHRKPLQGDAWGCLTRESVLVTQQGYYRRTIFVMRKSFAEFRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPC6</accession>
    <name>A0A0M2UPC6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03350</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000306">
        <property type="protein sequence ID" value="KKO17978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17978">
        <property type="protein sequence ID" value="KKO17978"/>
        <property type="gene ID" value="BROFUL_03350"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4123"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051304">
        <property type="term" value="P:chromosome separation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005234">
        <property type="entry name" value="ScpB_csome_segregation"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34298">
        <property type="entry name" value="PTHR34298"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04079">
        <property type="entry name" value="SMC_ScpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF019345">
        <property type="entry name" value="ScpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00281">
        <property type="entry name" value="TIGR00281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="1" id="KW-0132">Cell division</keyword>
    <keyword evidence="2" id="KW-0159">Chromosome partition</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO17978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="175" mass="19858" checksum="13B92CD614105BCE" modified="2015-11-11" version="1">MKSIEEIKPIVESLIFAAEEPISLRKLTDLIEGVDSAQIQEAITQLKSDYEMQGRSFQIEEIAGGYQLFTKPEYYEWIAKLRKKTGETKLSQAALETLAIIAYKQPILRANLESIRGVQSGQIIRLLMEKDLVKVVGRDESLGHPLLYGTTKKFLEYFGLKDIKDLPQVEELEAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPE3</accession>
    <name>A0A0M2UPE3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03323</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000304">
        <property type="protein sequence ID" value="KKO17993.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17993">
        <property type="protein sequence ID" value="KKO17993"/>
        <property type="gene ID" value="BROFUL_03323"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17993.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="78" mass="9135" checksum="B8BD18BF24ED8B2F" modified="2015-11-11" version="1" fragment="single">MSPLSILPYFPFQRVRITKQTVFPDAEISQLTAVPDERFRPICHACGSKAQRIYRHDKRSLRDLNPGSVRVWINCSYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQD3</accession>
    <name>A0A0M2UQD3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 13 15">tRNA (guanine-N(1)-)-methyltransferase</fullName>
            <ecNumber evidence="6 13 15">2.1.1.228</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">M1G-methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">tRNA [GM37] methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">trmD</name>
        <name evidence="17" type="ORF">BROFUL_03030</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 13 15">Specifically methylates guanosine-37 in various tRNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 13 15">
            <text>guanosine(37) in tRNA + S-adenosyl-L-methionine = H(+) + N(1)-methylguanosine(37) in tRNA + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:36899"/>
            <dbReference type="Rhea" id="RHEA-COMP:10145"/>
            <dbReference type="Rhea" id="RHEA-COMP:10147"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:73542"/>
            <dbReference type="ChEBI" id="CHEBI:74269"/>
            <dbReference type="EC" id="2.1.1.228"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="5 13 15">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3 13 15">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 13 15">Belongs to the RNA methyltransferase TrmD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.228" evidence="6 13 15"/>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18303.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18303">
        <property type="protein sequence ID" value="KKO18303"/>
        <property type="gene ID" value="BROFUL_03030"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3740"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052906">
        <property type="term" value="F:tRNA (guanine(37)-N(1))-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd18080">
        <property type="entry name" value="TrmD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1270.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00605">
        <property type="entry name" value="TrmD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002649">
        <property type="entry name" value="tRNA_m1G_MeTrfase_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023148">
        <property type="entry name" value="tRNA_m1G_MeTrfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016009">
        <property type="entry name" value="tRNA_MeTrfase_TRMD/TRM10"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46417">
        <property type="entry name" value="PTHR46417"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01746">
        <property type="entry name" value="tRNA_m1G_MT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000386">
        <property type="entry name" value="tRNA_mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="SSF75217"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00088">
        <property type="entry name" value="trmD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 13 15" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 13 15" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11 13 14" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="10 13 15" id="KW-0808">Transferase</keyword>
    <keyword evidence="12 13 15" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="tRNA_m1G_MT" evidence="16">
        <location>
            <begin position="24"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="13 14">
        <location>
            <begin position="132"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13 14">
        <location>
            <position position="112"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00014679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRSR" id="PIRSR000386-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="RuleBase" id="RU003464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF01746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="KKO18303.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="224" mass="25495" checksum="89911FEC854EFFAB" modified="2015-11-11" version="1">MRIDIVTLFPEMFENVLGHSILKIAREKNLVQYHLFNIREYADNRRCVDDRPYGGGPGMVIKPEPVFNTVEAIGQQTDIPSKKILLTPQGQRLTQSIAKELAKEPYLMLMCGHYEGFDERIRTGLDVFELSIGDFVLSGGEIPAMVVIDAVVRLIPGVLGDLDSAINESFSCDLLEHPQYTRPADYRGMKVPEVLLSGHHQKIKEWQKDHAIKRTRERRPDLIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQJ2</accession>
    <name>A0A0M2UQJ2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02932</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000276">
        <property type="protein sequence ID" value="KKO18368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18368">
        <property type="protein sequence ID" value="KKO18368"/>
        <property type="gene ID" value="BROFUL_02932"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="56" mass="6855" checksum="FB3E010FAB8F5540" modified="2015-11-11" version="1">MDKGFMYTFEDEKIIEYMKLSTEDKLKWLAEINEFAVMVLNDREKDFREKLRACEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQJ3</accession>
    <name>A0A0M2UQJ3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Metallophosphoesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03186</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18137.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18137">
        <property type="protein sequence ID" value="KKO18137"/>
        <property type="gene ID" value="BROFUL_03186"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3929"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005235">
        <property type="entry name" value="YmdB-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36303">
        <property type="entry name" value="PTHR36303"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13277">
        <property type="entry name" value="YmdB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004789">
        <property type="entry name" value="DR1281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00282">
        <property type="entry name" value="TIGR00282"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton donor" evidence="1">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="8"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="39"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="40"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="67"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="151"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="176"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="178"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>1</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR004789-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR004789-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18137.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="262" mass="28541" checksum="5D96CE20873ED29D" modified="2015-11-11" version="1">MNVLVIGDIVGKPGRMILKEKLKPFIDKEEVHFCIANGENAAAGAGITAEIATELLSYGIDVITTGDHVWDKKEILPMMETGTSVLRPANYSPLAMGKGYVIKNSKLGNPVGVINLLGRVFMKPIDCPFRVSDEIVKNISRETKVIFVDMHAEATSEKIAMGWYLDGKVSAVLGTHTHVPTADEKILPKGTAFISDLGMTGPHESVLGRKIDCVLKAIVTQMPTKFDVAERDMRINGVKIVVNSQTGNAESIKRIEIKEGDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQY9</accession>
    <name>A0A0M2UQY9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Flagellar FliJ protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_03009</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
            <orientation evidence="2">Cytoplasmic side</orientation>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the FliJ family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18282.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18282">
        <property type="protein sequence ID" value="KKO18282"/>
        <property type="gene ID" value="BROFUL_03009"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009288">
        <property type="term" value="C:bacterial-type flagellum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044781">
        <property type="term" value="P:bacterial-type flagellum organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012823">
        <property type="entry name" value="Flagell_FliJ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02050">
        <property type="entry name" value="FliJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02473">
        <property type="entry name" value="flagell_FliJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1005">Bacterial flagellum biogenesis</keyword>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0145">Chemotaxis</keyword>
    <keyword evidence="10" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0653">Protein transport</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00020392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO18282.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="152" mass="18365" checksum="6C365774F1A3D887" modified="2015-11-11" version="1">MRFQFKFQKLLEIEKYREKDLTKEISVLKNKLHEEEKLLVFLQSVLSLQQVEMERKMHTLGDATVFILFESYLSKLNHDISIQEAKVKEASMRVSSVQNALLKVFKKRKVFEKLRERYENEYKEQALKSENKKYDEIAISRFYYKGRKKDIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR25</accession>
    <name>A0A0M2UR25_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03044</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18317.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18317">
        <property type="protein sequence ID" value="KKO18317"/>
        <property type="gene ID" value="BROFUL_03044"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18317.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="84" mass="9431" checksum="EB8D0F9A171F8F39" modified="2015-11-11" version="1">MRAEYDFRGGVRGKHYRAMQAGYTITIHEADGTTVVKDVIPKEGAVILEPDVRAYFPDSESVNRTLRCLIPLLPKKLKTKAKKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR56</accession>
    <name>A0A0M2UR56_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 7">4-alpha-glucanotransferase</fullName>
            <ecNumber evidence="3 7">2.4.1.25</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5 7">Amylomaltase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6 7">Disproportionating enzyme</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">malQ</name>
        <name evidence="8" type="ORF">BROFUL_02951</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>Transfers a segment of a (1-&gt;4)-alpha-D-glucan to a new position in an acceptor, which may be glucose or a (1-&gt;4)-alpha-D-glucan.</text>
            <dbReference type="EC" id="2.4.1.25"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the disproportionating enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.25" evidence="3 7"/>
    <dbReference type="EMBL" id="LAQJ01000278">
        <property type="protein sequence ID" value="KKO18352.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18352">
        <property type="protein sequence ID" value="KKO18352"/>
        <property type="gene ID" value="BROFUL_02951"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3655"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004134">
        <property type="term" value="F:4-alpha-glucanotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102500">
        <property type="term" value="F:beta-maltose 4-alpha-glucanotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003385">
        <property type="entry name" value="Glyco_hydro_77"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32438">
        <property type="entry name" value="PTHR32438"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02446">
        <property type="entry name" value="Glyco_hydro_77"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00217">
        <property type="entry name" value="malQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="7 8" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 8" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005684"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00020295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00031423"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00031501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU361207"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18352.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="498" mass="57871" checksum="F61B52CFFB7FD4E2" modified="2015-11-11" version="1">MNRRSGILLHITSLSAPHGVGDFGETAYQFVDFLAETRQSLWQILPLNPTSIVYGNSPYSSNSAFAGNHTLISLDLLIQDGILSKSDMKDQPTFLHDLVDYDIVTPFKEKMLRVAYHNVRHTLEKNGEFEKFCAENAHWLEDYTLFVALKENFHGVAWYDWPEGLRHRREDVLQDRRNSLRDRILMEKFFQFLFFRQWFSLKKYCNSKNIQIIGDIPIYVTDDSADVWAKPEIFKLDDTSKPLYIAGVPPDYFSATGQRWGNPVYNWGILKDTGYSWWLRRIEYNLKLYDIIRLDHFRGFVSYWEIPAGEKTAINGKWVDAPVKDFFNILYRHFPSLPIIAEDLGTITPDVREIMSMFGIPGMKVLLFAFGDDLPVNPYIPHNHTPSCIVYTGTHDNNTVKGWFKQDATTEDKKRMHRYLGREVTEDTIHREMIRLAMMSVATMVVMPMQDVLGLGEESRMNLPSTSKNNWRWRLSPEHLTPALKQELTETTTIYGRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URE5</accession>
    <name>A0A0M2URE5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">3-deoxy-manno-octulosonate cytidylyltransferase</fullName>
            <ecNumber evidence="2">2.7.7.38</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">CMP-2-keto-3-deoxyoctulosonic acid synthase</fullName>
            <shortName evidence="2">CKS</shortName>
            <shortName evidence="2">CMP-KDO synthase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">kdsB</name>
        <name evidence="3" type="ORF">BROFUL_03103</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>3-deoxy-alpha-D-manno-oct-2-ulosonate + CTP = CMP-3-deoxy-beta-D-manno-octulosonate + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:23448"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <dbReference type="ChEBI" id="CHEBI:85986"/>
            <dbReference type="ChEBI" id="CHEBI:85987"/>
            <dbReference type="EC" id="2.7.7.38"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Nucleotide-sugar biosynthesis; CMP-3-deoxy-D-manno-octulosonate biosynthesis; CMP-3-deoxy-D-manno-octulosonate from 3-deoxy-D-manno-octulosonate and CTP: step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the KdsB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.38" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000286">
        <property type="protein sequence ID" value="KKO18205.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18205">
        <property type="protein sequence ID" value="KKO18205"/>
        <property type="gene ID" value="BROFUL_03103"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3832"/>
    <dbReference type="UniPathway" id="UPA00358">
        <property type="reaction ID" value="UER00476"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008690">
        <property type="term" value="F:3-deoxy-manno-octulosonate cytidylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033468">
        <property type="term" value="P:CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009103">
        <property type="term" value="P:lipopolysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02517">
        <property type="entry name" value="CMP-KDO-Synthetase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00057">
        <property type="entry name" value="KdsB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003329">
        <property type="entry name" value="Cytidylyl_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004528">
        <property type="entry name" value="KdsB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02348">
        <property type="entry name" value="CTP_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00466">
        <property type="entry name" value="kdsB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 2" id="KW-0448">Lipopolysaccharide biosynthesis</keyword>
    <keyword evidence="2 3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022985"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00057"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18205.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="255" mass="28688" checksum="077C9D6ECFBEFFC1" modified="2015-11-11" version="1">MKAVVVIPARYASTRLPYKLILPEVKSVTGRYIIEHVYQNVKQARRIHQVIVATDNQHIYEIVRGFGGNVEMTSASHVSGTDRIAEVSGRLDADLIVNVQGDEPEMHASVVDQVIDSLVEDNVAVMATLAHVITDAAELSNPNVVKVVLDNYGYALYFSRSPIPCVRDSKDPFKEPGIRFLRHLGIYAYRRDFLLQYSKLPASPLEQAEKLEQLRALSNGYKIKVAITEYTSRGIDTREDLLAFLERYKLGKIQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URP0</accession>
    <name>A0A0M2URP0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF559 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02565</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000238">
        <property type="protein sequence ID" value="KKO18733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18733">
        <property type="protein sequence ID" value="KKO18733"/>
        <property type="gene ID" value="BROFUL_02565"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007569">
        <property type="entry name" value="DUF559"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04480">
        <property type="entry name" value="DUF559"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF559" evidence="2">
        <location>
            <begin position="8"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04480"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="69" mass="7505" checksum="6942B95B93BA1532" modified="2015-11-11" version="1">MQEKPKADETGEKDKQKSRALESAGFIIIRLTDEDVLKNMSGVIQRIEKVVDAIGLSGPPPYPPPAGDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URR2</accession>
    <name>A0A0M2URR2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Isochorismatase hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02745</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000256">
        <property type="protein sequence ID" value="KKO18557.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18557">
        <property type="protein sequence ID" value="KKO18557"/>
        <property type="gene ID" value="BROFUL_02745"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3395"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.850">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000868">
        <property type="entry name" value="Isochorismatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036380">
        <property type="entry name" value="Isochorismatase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00857">
        <property type="entry name" value="Isochorismatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52499">
        <property type="entry name" value="SSF52499"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="119"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="domain" description="Isochorismatase" evidence="2">
        <location>
            <begin position="13"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18557.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="183" mass="21006" checksum="DBDB5388070BBC50" modified="2015-11-11" version="1">MKKGKSHDKVRYAFLVCDMLNDFVKEGAALEVPRARTIIGNMKKELKKARKNRIPVIYCCDAHKNSDPEFNLWPRHAVRGTDGALVIEQLRPQKRDYRVQKTSYSCFYKTSLDRILKKLGITHVIITGVVTNICVLYTAADAYMRGYKIVVPDHCVAALTIREHQFALQQMKRIFHANVISVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URW3</accession>
    <name>A0A0M2URW3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02886</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18380.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18380">
        <property type="protein sequence ID" value="KKO18380"/>
        <property type="gene ID" value="BROFUL_02886"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3576"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030931">
        <property type="entry name" value="Group_II_RT_mat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013597">
        <property type="entry name" value="Mat_intron_G2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08388">
        <property type="entry name" value="GIIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="SSF56672"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04416">
        <property type="entry name" value="group_II_RT_mat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="76"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18380.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="432" mass="50458" checksum="F61D424C9FB71B1B" modified="2015-11-11" version="1">MTKASISLQELRRKIYRKAKIEKQWRFWGLYCHVCKKEVLREAYRLAKANDGAPGNDGKSFEDIEAEGVEGFLEGIGQELLNRTYRPLPNRKVEIPKGNGKTRILGIPTVKDRVVQGALKLLLEPIFEADFKECSYGYRPKRHAHQAIDRVTKGILYGLTRVVDVDLSGYFDNIRHHILLEKIARRVQDDDIMHLVKLILKANGKKGVPQGGIISPLLSNLYLNEVDEMMERAREVTRSKGYENLDFIRSADDMVILVHWHPKEDWILQKVQKRHKEELDKLEVEMNLEKTKVVDLKKGGSFSFLGFDFRLTRNREGKAYVSKTPRKKKCIEIGKRVRAVLKANWNKPLKEVIQAVDAIIRGWVNYFRIGNSNSAFNKVRDYLEMKVRKFVLRRKKLKGFGWKMWSREEIYGKWGLYNDYRIRYVYPKANSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URX4</accession>
    <name>A0A0M2URX4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Bifunctional protein HldE</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="9">D-beta-D-heptose 7-phosphate kinase</fullName>
                <ecNumber evidence="9">2.7.1.167</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="9">D-beta-D-heptose 7-phosphotransferase</fullName>
            </alternativeName>
            <alternativeName>
                <fullName evidence="9">D-glycero-beta-D-manno-heptose-7-phosphate kinase</fullName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="9">D-beta-D-heptose 1-phosphate adenylyltransferase</fullName>
                <ecNumber evidence="9">2.7.7.70</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="9">D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase</fullName>
            </alternativeName>
        </domain>
    </protein>
    <gene>
        <name evidence="9" type="primary">hldE</name>
        <name evidence="12" type="ORF">BROFUL_02896</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 9">Catalyzes the ADP transfer from ATP to D-glycero-beta-D-manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose.</text>
    </comment>
    <comment type="function">
        <text evidence="2 9">Catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate at the C-1 position to selectively form D-glycero-beta-D-manno-heptose-1,7-bisphosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>ATP + D-glycero-beta-D-manno-heptose 1-phosphate + H(+) = ADP-D-glycero-beta-D-manno-heptose + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:27465"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:59967"/>
            <dbReference type="ChEBI" id="CHEBI:61593"/>
            <dbReference type="EC" id="2.7.7.70"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>ATP + D-glycero-beta-D-manno-heptose 7-phosphate = ADP + D-glycero-beta-D-manno-heptose 1,7-bisphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:27473"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:60204"/>
            <dbReference type="ChEBI" id="CHEBI:60208"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.167"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="9">Nucleotide-sugar biosynthesis; ADP-L-glycero-beta-D-manno-heptose biosynthesis; ADP-L-glycero-beta-D-manno-heptose from D-glycero-beta-D-manno-heptose 7-phosphate: step 1/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="9">Nucleotide-sugar biosynthesis; ADP-L-glycero-beta-D-manno-heptose biosynthesis; ADP-L-glycero-beta-D-manno-heptose from D-glycero-beta-D-manno-heptose 7-phosphate: step 3/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="9">In the C-terminal section; belongs to the cytidylyltransferase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="9">In the N-terminal section; belongs to the carbohydrate kinase PfkB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.167" evidence="9"/>
    <dbReference type="EC" id="2.7.7.70" evidence="9"/>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18390.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18390">
        <property type="protein sequence ID" value="KKO18390"/>
        <property type="gene ID" value="BROFUL_02896"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3588"/>
    <dbReference type="UniPathway" id="UPA00356">
        <property type="reaction ID" value="UER00437"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033785">
        <property type="term" value="F:heptose 7-phosphate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033786">
        <property type="term" value="F:heptose-1-phosphate adenylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016773">
        <property type="term" value="F:phosphotransferase activity, alcohol group as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097171">
        <property type="term" value="P:ADP-L-glycero-beta-D-manno-heptose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd01172">
        <property type="entry name" value="RfaE_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01603">
        <property type="entry name" value="HldE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023030">
        <property type="entry name" value="Bifunc_HldE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004821">
        <property type="entry name" value="Cyt_trans-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011611">
        <property type="entry name" value="PfkB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011913">
        <property type="entry name" value="RfaE_dom_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011914">
        <property type="entry name" value="RfaE_dom_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01467">
        <property type="entry name" value="CTP_transf_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00294">
        <property type="entry name" value="PfkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00125">
        <property type="entry name" value="cyt_tran_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02199">
        <property type="entry name" value="rfaE_dom_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8 9" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="9" id="KW-0418">Kinase</keyword>
    <keyword evidence="7 9" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="5 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PfkB" evidence="10">
        <location>
            <begin position="15"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="domain" description="CTP_transf_like" evidence="11">
        <location>
            <begin position="363"/>
            <end position="453"/>
        </location>
    </feature>
    <feature type="region of interest" description="Ribokinase" evidence="9">
        <location>
            <begin position="1"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="region of interest" description="Cytidylyltransferase" evidence="9">
        <location>
            <begin position="362"/>
            <end position="507"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="281"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="211"/>
            <end position="214"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002319"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00003753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF01467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO18390.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="507" mass="55127" checksum="4F786BC923FF8782" modified="2015-11-11" version="1">MDTLLNIIANLGSPRIMVVGDFMLDKYVRGEVKRISQEAPIPVISVSSEDVRPGGAGSVVNNLQALGAQVLACGIIGDDAHGHTLVDMLRDLGVDREGICVDRSRPTILKMRFLGHLQTAGKGIQQLLRVDYEKTHGIAEEIEAQLTSYLKKNIPGCDIVLVSDMNKGLLSHSLLKTIVSLSGRHNKMVLVDPKLMSDYTCYEGVTAMTPNRNETEIATGIKISDIDSLNRAGKKLTSSLSLEYCIITIDKDGIFLYHKDDGGKIFPTVPRMVFDVTGAGDMVLSIFGMVVGSGYSFQDAALLANIAAGIEVGKIGATPVSKDEILHELMTGRSQISGKIKDAEGIPHIVNEHRKKSDKIVFTNGCFDILHVGHIEYLKFARKQGDLLVVGLNTDRSVRSQKGPTRPFVSEADRAKMLAALEDVTYVVPFDELTPLNLIKAVRPDVLVKGEDWKNAGAVGGEFVESYGGKVVYAPFVEGVSTTNIVSRIIKRHSEMESLKNAADQIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US18</accession>
    <name>A0A0M2US18_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02669</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000245">
        <property type="protein sequence ID" value="KKO18632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18632">
        <property type="protein sequence ID" value="KKO18632"/>
        <property type="gene ID" value="BROFUL_02669"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008969">
        <property type="entry name" value="CarboxyPept-like_regulatory"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49464">
        <property type="entry name" value="SSF49464"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="124"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="352"/>
            <end position="373"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="845" mass="97984" checksum="B51A3A698B83AD5F" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US33</accession>
    <name>A0A0M2US33_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Imidazole glycerol phosphate synthase subunit HisF</fullName>
            <ecNumber evidence="9">4.3.2.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">IGP synthase cyclase subunit</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">IGP synthase subunit HisF</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">ImGP synthase subunit HisF</fullName>
            <shortName evidence="9">IGPS subunit HisF</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">hisF</name>
        <name evidence="11" type="ORF">BROFUL_02654</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8 9">IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>5-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide + L-glutamine = 5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide + D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate + H(+) + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:24793"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58278"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58475"/>
            <dbReference type="ChEBI" id="CHEBI:58525"/>
            <dbReference type="EC" id="4.3.2.10"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 9">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 5/9.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 9">Heterodimer of HisH and HisF.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 9 10">Belongs to the HisA/HisF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.3.2.10" evidence="9"/>
    <dbReference type="EMBL" id="LAQJ01000242">
        <property type="protein sequence ID" value="KKO18647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18647">
        <property type="protein sequence ID" value="KKO18647"/>
        <property type="gene ID" value="BROFUL_02654"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3292"/>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00010"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000107">
        <property type="term" value="F:imidazoleglycerol-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04731">
        <property type="entry name" value="HisF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01013">
        <property type="entry name" value="HisF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006062">
        <property type="entry name" value="His_biosynth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004651">
        <property type="entry name" value="HisF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00977">
        <property type="entry name" value="His_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="SSF51366"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00735">
        <property type="entry name" value="hisF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9 10" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 9 10" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="7 9" id="KW-0456">Lyase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" evidence="9">
        <location>
            <position position="11"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009667"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00025475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO18647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="258" mass="28198" checksum="52CA84DE6044249D" modified="2015-11-11" version="1">MLAKRIIPCLDVKDGRVVKGTNFLNLKDAGDPVEIAALYDREGADELTFLDITASHENRNIILDVVKRTAEQVFMPLTVGGGIRNIDDIRRLLTAGADKVSINTAAVKEPEFITKASRRFGSQCIVIAIDAKRVQGNFETPRWEVYINGGRTPTGLDAVEWAKAAENRGAGEILLTSMDCDGTRDGFDIALNKTISEAVNIPVIASGGAGKVEHFYDVFTRGKVDAALAASIFHYRTISIQTVKEYLIKNGVSIRPYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US54</accession>
    <name>A0A0M2US54_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02382</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000228">
        <property type="protein sequence ID" value="KKO18903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18903">
        <property type="protein sequence ID" value="KKO18903"/>
        <property type="gene ID" value="BROFUL_02382"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="84" mass="9468" checksum="5C02A8458FCC8631" modified="2015-11-11" version="1">MNERLLRFTRNDNVQCAIKVHGRCHCGGPFPKQSPRFHKGTLVAAVPRYAIITTSFGITESLFCSLVVMMSEGTLNRHENFSKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USB1</accession>
    <name>A0A0M2USB1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter ATP-binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02346</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18953">
        <property type="protein sequence ID" value="KKO18953"/>
        <property type="gene ID" value="BROFUL_02346"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="1">
        <location>
            <begin position="53"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="78" mass="8281" checksum="376F757648083181" modified="2015-11-11" version="1">MSESVGVDNLIELDYVKIDSGRGMSKASGAKPDLCVQHVSKSFQSKNGTVYVLEDINLEINQGEFVCLVGPSGCGKST</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USB5</accession>
    <name>A0A0M2USB5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Hybrid sensor</fullName>
            <ecNumber evidence="11">2.7.3.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">gacS_2</name>
        <name evidence="11" type="ORF">BROFUL_02564</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.3.-" evidence="11"/>
    <dbReference type="EMBL" id="LAQJ01000238">
        <property type="protein sequence ID" value="KKO18732.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18732">
        <property type="protein sequence ID" value="KKO18732"/>
        <property type="gene ID" value="BROFUL_02564"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1902531">
        <property type="term" value="P:regulation of intracellular signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001610">
        <property type="entry name" value="PAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013767">
        <property type="entry name" value="PAS_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13492">
        <property type="entry name" value="GAF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00989">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13426">
        <property type="entry name" value="PAS_9"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00065">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00086">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 5" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PAS" evidence="9">
        <location>
            <begin position="14"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="9">
        <location>
            <begin position="306"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="10">
        <location>
            <begin position="377"/>
            <end position="431"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="7">
        <location>
            <begin position="595"/>
            <end position="816"/>
        </location>
    </feature>
    <feature type="domain" description="Response regulatory" evidence="8">
        <location>
            <begin position="835"/>
            <end position="956"/>
        </location>
    </feature>
    <feature type="domain" description="Response regulatory" evidence="8">
        <location>
            <begin position="985"/>
            <end position="1105"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="551"/>
            <end position="591"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="5">
        <location>
            <position position="889"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="5">
        <location>
            <position position="1035"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO18732.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1120" mass="125929" checksum="03EBB5BE6625C5C8" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USC7</accession>
    <name>A0A0M2USC7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ABC transporter permease component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02361</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18968.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18968">
        <property type="protein sequence ID" value="KKO18968"/>
        <property type="gene ID" value="BROFUL_02361"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001638">
        <property type="entry name" value="Solute-binding_3/MltF_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00497">
        <property type="entry name" value="SBP_bac_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00062">
        <property type="entry name" value="PBPb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="PBPb" evidence="2">
        <location>
            <begin position="55"/>
            <end position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18968.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="251" mass="28475" checksum="03C19A9BC6C9DC18" modified="2015-11-11" version="1">MRRFHEMLIVMAMKYPPFVIRSIVVLQICLWLMYFFPTDACAHQDTLEKIKNSGTMTWGFDAEGGAPYVFHDPAHPTKLIGFEVELVDAIARELGVEVQYFQNAWDSILLSLQRGDFDIALNGIEITPERAQSVLFTRPYYVYAEQIVVRASDNRMNRLEDLHGKKVGTLYNTEAKRLLEEMGDVAVSVYSGQVEPFKDLSLNRIDAVLVDLPIAAYYAKPNPQLRMVGGAVGEGYYGVALRREDAAWRKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USH9</accession>
    <name>A0A0M2USH9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Protein translocase subunit SecE</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">secE</name>
        <name evidence="8" type="ORF">BROFUL_02261</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Component of the Sec protein translocase complex. Heterotrimer consisting of SecY, SecE and SecG subunits. The heterotrimers can form oligomers, although 1 heterotrimer is thought to be able to translocate proteins. Interacts with the ribosome. Interacts with SecDF, and other proteins may be involved. Interacts with SecA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the SecE/SEC61-gamma family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000224">
        <property type="protein sequence ID" value="KKO19018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19018">
        <property type="protein sequence ID" value="KKO19018"/>
        <property type="gene ID" value="BROFUL_02261"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008320">
        <property type="term" value="F:protein transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0065002">
        <property type="term" value="P:intracellular protein transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006605">
        <property type="term" value="P:protein targeting"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043952">
        <property type="term" value="P:protein transport by the Sec complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.1030">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00422">
        <property type="entry name" value="SecE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005807">
        <property type="entry name" value="SecE_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038379">
        <property type="entry name" value="SecE_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001901">
        <property type="entry name" value="Translocase_SecE/Sec61-g"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00584">
        <property type="entry name" value="SecE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00964">
        <property type="entry name" value="secE_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01067">
        <property type="entry name" value="SECE_SEC61G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 7" id="KW-0653">Protein transport</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0811">Translocation</keyword>
    <keyword evidence="2 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1 7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="55"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="118"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00422"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="153" mass="16540" checksum="11CE10ED01DC856D" modified="2015-11-11" version="1">MSFFSVYRKGVGLYSRITVGIALGILALFASLSLYNALVDLPNIAGAAKVPLVDIGLTWGLVCSIVLFLFLGFFICIFVAGLETKIRPLDSGGKKTVEFLIETQGELQKVSWPTKYELVGSTAVVLVSVIVIGVFVLGVDWFVSIIMEYIGVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USU0</accession>
    <name>A0A0M2USU0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03252</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000297">
        <property type="protein sequence ID" value="KKO18066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18066">
        <property type="protein sequence ID" value="KKO18066"/>
        <property type="gene ID" value="BROFUL_03252"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644153" evidence="1">
        <location>
            <begin position="23"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="205" mass="23737" checksum="B6774E152B971B7A" modified="2015-11-11" version="1">MKKFTAIHCLVLLSLSITIQSAAYGYGYAKEEDPLIKVFKAVIFYGRQANWEKVSREVNSISDRIADVYAIFKIDLRPEINHAIQKQDFQSLTNHMANLVFFAIREKFYYNIQENLTVYVRSKVRLGLAEEYYLTLLAGNVRNYDARHKTTLHEDIYRRFVRARGTLGSAGFFGAGAIPPDVKEFERITKEIENLLFLAFPYFKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USW0</accession>
    <name>A0A0M2USW0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Nitrate reductase (quinone)</fullName>
            <ecNumber evidence="5">1.7.5.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">BROFUL_03229</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a quinol + nitrate = a quinone + H2O + nitrite</text>
            <dbReference type="Rhea" id="RHEA:56144"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16301"/>
            <dbReference type="ChEBI" id="CHEBI:17632"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
            <dbReference type="EC" id="1.7.5.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mo-bis(molybdopterin guanine dinucleotide)</name>
            <dbReference type="ChEBI" id="CHEBI:60539"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.7.5.1" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000295">
        <property type="protein sequence ID" value="KKO18081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18081">
        <property type="protein sequence ID" value="KKO18081"/>
        <property type="gene ID" value="BROFUL_03229"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3975"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043546">
        <property type="term" value="F:molybdopterin cofactor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02776">
        <property type="entry name" value="MopB_CT_Nitrate-R-NarG-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017840">
        <property type="entry name" value="DMSO_Rdtase_II_Mopterin_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037943">
        <property type="entry name" value="MopB_CT_Nitrate-R-NarG-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006657">
        <property type="entry name" value="MoPterin_dinucl-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006656">
        <property type="entry name" value="Mopterin_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006963">
        <property type="entry name" value="Mopterin_OxRdtase_4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027467">
        <property type="entry name" value="MopterinOxRdtase_cofactor_BS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00384">
        <property type="entry name" value="Molybdopterin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01568">
        <property type="entry name" value="Molydop_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="SSF50692"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03479">
        <property type="entry name" value="DMSO_red_II_alp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51669">
        <property type="entry name" value="4FE4S_MOW_BIS_MGD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00551">
        <property type="entry name" value="MOLYBDOPTERIN_PROK_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 13" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="11 13" id="KW-0408">Iron</keyword>
    <keyword evidence="12 13" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S Mo/W bis-MGD-type" evidence="14">
        <location>
            <begin position="54"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="61"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="65"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="69"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001854"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010312"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KKO18081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="910" mass="103252" checksum="4EE8CB99A2973BD1" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USY9</accession>
    <name>A0A0M2USY9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Cellulose synthase, catalytic subunit (UDP-forming)</fullName>
            <ecNumber evidence="10">2.4.1.12</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">bcsA</name>
        <name evidence="10" type="ORF">BROFUL_02562</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.12" evidence="10"/>
    <dbReference type="EMBL" id="LAQJ01000238">
        <property type="protein sequence ID" value="KKO18730.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18730">
        <property type="protein sequence ID" value="KKO18730"/>
        <property type="gene ID" value="BROFUL_02562"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3181"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016760">
        <property type="term" value="F:cellulose synthase (UDP-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035438">
        <property type="term" value="F:cyclic-di-GMP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030244">
        <property type="term" value="P:cellulose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005150">
        <property type="entry name" value="Cellulose_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009875">
        <property type="entry name" value="PilZ_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03552">
        <property type="entry name" value="Cellulose_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07238">
        <property type="entry name" value="PilZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 10" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 10" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="7"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="36"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="321"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="362"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="392"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="429"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="460"/>
            <end position="481"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_trans_2-like" evidence="8">
        <location>
            <begin position="78"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="domain" description="PilZ" evidence="9">
        <location>
            <begin position="630"/>
            <end position="721"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF07238"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO18730.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="747" mass="85950" checksum="7AAE755E4E7BB276" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT36</accession>
    <name>A0A0M2UT36_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8 9">Chromosomal replication initiator protein DnaA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">dnaA</name>
        <name evidence="14" type="ORF">BROFUL_02503</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8 9">Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'-TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8 10">Belongs to the DnaA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000235">
        <property type="protein sequence ID" value="KKO18780.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18780">
        <property type="protein sequence ID" value="KKO18780"/>
        <property type="gene ID" value="BROFUL_02503"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3110"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003688">
        <property type="term" value="F:DNA replication origin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006270">
        <property type="term" value="P:DNA replication initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006275">
        <property type="term" value="P:regulation of DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06571">
        <property type="entry name" value="Bac_DnaA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1750.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00377">
        <property type="entry name" value="DnaA_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001957">
        <property type="entry name" value="Chromosome_initiator_DnaA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020591">
        <property type="entry name" value="Chromosome_initiator_DnaA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018312">
        <property type="entry name" value="Chromosome_initiator_DnaA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013317">
        <property type="entry name" value="DnaA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013159">
        <property type="entry name" value="DnaA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024633">
        <property type="entry name" value="DnaA_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038454">
        <property type="entry name" value="DnaA_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010921">
        <property type="entry name" value="Trp_repressor/repl_initiator"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30050:SF2">
        <property type="entry name" value="PTHR30050:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00308">
        <property type="entry name" value="Bac_DnaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08299">
        <property type="entry name" value="Bac_DnaA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11638">
        <property type="entry name" value="DnaA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00051">
        <property type="entry name" value="DNAA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00760">
        <property type="entry name" value="Bac_DnaA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48295">
        <property type="entry name" value="SSF48295"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00362">
        <property type="entry name" value="DnaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01008">
        <property type="entry name" value="DNAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3 8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 8 9" id="KW-0235">DNA replication</keyword>
    <keyword evidence="7 8 9" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5 8 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="12">
        <location>
            <begin position="153"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="domain" description="Bac_DnaA_C" evidence="13">
        <location>
            <begin position="362"/>
            <end position="431"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="11">
        <location>
            <begin position="314"/>
            <end position="341"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="161"/>
            <end position="168"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006583"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00377"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000577"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU004227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="SMART" id="SM00760"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KKO18780.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="454" mass="52035" checksum="F957DFC909E8F2FE" modified="2015-11-11" version="1">MLETPVVSNNERDFILKGILSIIKEVVTAQQFEIWFSCLRVSSVTSNRITFVTPNSFIREWLKSHYHDLFSSAVYKVLNSSREVHFSTEEEVFDKLSATSFPPEEFFAGKKPPEENYHVPLNKYYSFENFVVGPCNRLAHAAAFAVSETPGLAYNPLFIHGASGLGKTHLLHAINNVLSSKHKMKTLYVPCERFVNHYISTIRTNSWDSFRAFYRNIDALLIDDIQAFENSQESREEFFHTFNTLYNAKKQIVITSDCPPELIATLEDRLISRFKWGLLCSIDNTTRETRIAIAEKKASLWGINLSHEAASYLAENVTGSIRELEGAIARLSREEKITKNSITLDRMRKIVWELSGNKRYISIETVIKAVSERFNIRVSQLQSRCRTRSLALPRQIAMHLSRKLTKMSLMEIGGYLGGRDHSTVIHADEKITKMLKKDKNLSIILQKLESELQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT94</accession>
    <name>A0A0M2UT94_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02243</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19062">
        <property type="protein sequence ID" value="KKO19062"/>
        <property type="gene ID" value="BROFUL_02243"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="331" mass="38497" checksum="CE3F1C3B57F2741F" modified="2015-11-11" version="1">MEKVYFLIQEWNHPASRYRVLQYVPYLKESHIDAKVSLFPDSFCQWMKLFAELKDYQVLFVQKKRLWRWQLWYLTRKHIRIIYDFDDAVMFKSPVDGGGRSFKRQRTFARMVRYSDQVIAGNQYLKAQALPYNNNVVVIPTAIGTSRYTMKDYRRDKKNITLGWIGSKSSLPFLEELTPAFDQLASKDKSLELKIICNDFFECRTMPVIKKMWALEDENADLQDVDIGLAPLPNHEWTKGKCATKLLQYLSVGIPVVCSPVGVHNEIIQEGVNGLFAASAQEWVEKIGLLIKDKLLRERIGLEGMKTVESSYSLKANLPKVINIIKERYHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTB7</accession>
    <name>A0A0M2UTB7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">NADH-quinone oxidoreductase subunit D</fullName>
            <ecNumber evidence="5">7.1.1.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">NADH dehydrogenase I subunit D</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">NDH-1 subunit D</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">nuoD</name>
        <name evidence="8" type="ORF">BROFUL_03072</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>a quinone + 5 H(+)(in) + NADH = a quinol + 4 H(+)(out) + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:57888"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="5">NDH-1 is composed of 14 different subunits. Subunits NuoB, C, D, E, F, and G constitute the peripheral sector of the complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Peripheral membrane protein</topology>
            <orientation evidence="5">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5 6">Belongs to the complex I 49 kDa subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.-" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000285">
        <property type="protein sequence ID" value="KKO18226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18226">
        <property type="protein sequence ID" value="KKO18226"/>
        <property type="gene ID" value="BROFUL_03072"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3797"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050136">
        <property type="term" value="F:NADH dehydrogenase (quinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048038">
        <property type="term" value="F:quinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.645.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01358">
        <property type="entry name" value="NDH1_NuoD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001135">
        <property type="entry name" value="NADH_Q_OxRdtase_suD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014029">
        <property type="entry name" value="NADH_UbQ_OxRdtase_49kDa_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022885">
        <property type="entry name" value="NDH1_su_D/H"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029014">
        <property type="entry name" value="NiFe-Hase_large"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11993">
        <property type="entry name" value="PTHR11993"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00346">
        <property type="entry name" value="Complex1_49kDa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56762">
        <property type="entry name" value="SSF56762"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01962">
        <property type="entry name" value="NuoD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00535">
        <property type="entry name" value="COMPLEX1_49K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="4 5 6" id="KW-0520">NAD</keyword>
    <keyword evidence="2 5" id="KW-0874">Quinone</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5 6" id="KW-1278">Translocase</keyword>
    <keyword evidence="1 5 6" id="KW-0813">Transport</keyword>
    <keyword evidence="5" id="KW-0830">Ubiquinone</keyword>
    <feature type="domain" description="Complex1_49kDa" evidence="7">
        <location>
            <begin position="114"/>
            <end position="384"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022719"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00346"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="384" mass="43514" checksum="35F5AB75C7EBDFF6" modified="2015-11-11" version="1">MTINMGPQHPSTHGVLRLLLELDGEVITRAVPHVGFLHRGVEKLAEYRTYHQCIPLTDRLDYVAPFSNNLAYALAVEKLLGIEVPERAQHIRVLLCELTRIASHLLWLATHALDIGAMTVFFYCFREREAIYDIFEMVTGARMHTSYIRVGGVSRDLPGGFTEKTHKFIMEFPDRIKEYETLLTENPIWKKRTVGVGVISAEDAIDYGLSGPSLRGSGVNWDIRKAEPYSHYDKYHFDVPLGKNGDVYDRYRIRIEEMRQSNKIVHQALNILPRGNFLARIPNVTLPPKEDVETNMESMITHFKLITDGIHPPKGEVYASIEAPKGELGFYLVSDGSSHPYRLKIRPPSFVNLEALPKMIEGRLLPDVVATIGSLDIVLGEIDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTK6</accession>
    <name>A0A0M2UTK6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Flagellar L-ring protein</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Basal body L-ring protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5 6" type="primary">flgH</name>
        <name evidence="6" type="ORF">BROFUL_02125</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 5">Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">The basal body constitutes a major portion of the flagellar organelle and consists of four rings (L,P,S, and M) mounted on a central rod.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell outer membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Bacterial flagellum basal body</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the FlgH family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19142">
        <property type="protein sequence ID" value="KKO19142"/>
        <property type="gene ID" value="BROFUL_02125"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009427">
        <property type="term" value="C:bacterial-type flagellum basal body, distal rod, L ring"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003774">
        <property type="term" value="F:cytoskeletal motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00415">
        <property type="entry name" value="FlgH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000527">
        <property type="entry name" value="Flag_Lring"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34933">
        <property type="entry name" value="PTHR34933"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02107">
        <property type="entry name" value="FlgH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01008">
        <property type="entry name" value="FLGLRINGFLGH"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="5" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="6" id="KW-0966">Cell projection</keyword>
    <keyword evidence="6" id="KW-0969">Cilium</keyword>
    <keyword evidence="6" id="KW-0282">Flagellum</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002591"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00415"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="221" mass="24489" checksum="6E7CCC25F755F7F3" modified="2015-11-11" version="1">MWKDLKIRIMKKELVPCRFVIVFLVSILSLILNNGVHADSIWKKRVTTNTNLYNDNRARGIGDIVTVQINESTEITGTEDSSSDSAQSHSVNIDTANFLTKVLGDTSGYLPNIDSNTSHTFSGKGAYESNRNLSLELTAVVTELLANGNLIIEGNRDVNINGEKYNIKVSGIVRPIDISTDNIIQSSSIANANVTLEGKGFLTRAGKRGWWNRIYEVIWPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTN5</accession>
    <name>A0A0M2UTN5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01848</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000191">
        <property type="protein sequence ID" value="KKO19433.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19433">
        <property type="protein sequence ID" value="KKO19433"/>
        <property type="gene ID" value="BROFUL_01848"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2302"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028098">
        <property type="entry name" value="Glyco_trans_4-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13439">
        <property type="entry name" value="Glyco_transf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_4-like_N" evidence="2">
        <location>
            <begin position="28"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="domain" description="Glycos_transf_1" evidence="1">
        <location>
            <begin position="198"/>
            <end position="363"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19433.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="389" mass="44028" checksum="243B4285ED943C08" modified="2015-11-11" version="1">MRDYIDHKPMAKLKIVVLGTRGFPNVQGGVEEHCRNLYPRLVKRGCDVVVLTRKPYVDPNLATYEDVHLIPLSCPKNKFLEAFTHTFLGIFFAKKMHPDLIHVHAVGPALFIPVARFLGLKVVMTNHGPDYQRKKWNKLAKMSLKLGERLGSRWANAIICISESIAEAIRKEYNREVTVIPNGVTIPEVLQTDDTLRKYGLQKGKYILAVGRLVPEKGFHDLMDAFNYFQPPKYQFLNDGWKLAIVGSADHEDQYSLDLKEKARKNCDIVLTGFLAGKSLSELYSHAGLFVLPSYHEGLPIVLLEAMIYGLSCIASDIPANRNVELSENRFFKVGDPEALAITMKEFVGKPTNENERRKQIDTIAEKFDWEKIAEKTLKVFTDAIGGKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTQ7</accession>
    <name>A0A0M2UTQ7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative uroporphyrinogen decarboxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02075</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000209">
        <property type="protein sequence ID" value="KKO19197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19197">
        <property type="protein sequence ID" value="KKO19197"/>
        <property type="gene ID" value="BROFUL_02075"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004853">
        <property type="term" value="F:uroporphyrinogen decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006779">
        <property type="term" value="P:porphyrin-containing compound biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.210">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038071">
        <property type="entry name" value="UROD/MetE-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000257">
        <property type="entry name" value="Uroporphyrinogen_deCOase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01208">
        <property type="entry name" value="URO-D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51726">
        <property type="entry name" value="SSF51726"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Uroporphyrinogen_deCOase" evidence="1">
        <location>
            <begin position="8"/>
            <end position="340"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01208"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="350" mass="37964" checksum="39AD605C0BCDB50B" modified="2015-11-11" version="1">MSSADEMTPKERMAAMLQGKAADRLLVSPLILNFASRSLNLPVRSFCTNGKNMGDANIACFKKYRHDIVYIFSTTSTVAEAMGTRMYFPEDDAPQVETPFLQTREDIRKLTPADPEKDGRIPVYLEAVKRCVDAIGDEVFIVPVIGAPFTTSAALRGTETFIKELYTDPELVHAVMKVATQSVKNIIDACVKAGGVPVTVEPIATGSMISESHFRTFVLPYLKEVYAHIHSYGLPGVLHICGKTKRVIACMAESGADILSIDAIDLQEAKALVGDKVCLMGNVSPADGMFKGNPEIIATMVKDCITKAADSPKGFVLATGCEVPIKTPHENLIAFLEAGRRVARLPVNLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTQ9</accession>
    <name>A0A0M2UTQ9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Pyruvate-formate lyase-activating protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_02935</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000276">
        <property type="protein sequence ID" value="KKO18371.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18371">
        <property type="protein sequence ID" value="KKO18371"/>
        <property type="gene ID" value="BROFUL_02935"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3633"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012840">
        <property type="entry name" value="NrdG2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01094">
        <property type="entry name" value="Uncharacterised_Radical_SAM_Su"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02495">
        <property type="entry name" value="NrdG2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="6" id="KW-0456">Lyase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="5">
        <location>
            <begin position="1"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18371.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="229" mass="25414" checksum="AD0B66A30E5504D5" modified="2015-11-11" version="1">MGSKIVSIIFLPTCNLRCPYCHAPHLVQTPNDLESIPVDAVIDKIRQNAGWVDGVVVTGGEPTSHKHLDEFLTLLKNTGVVVRLDTNGTNPRIVEDFIARKLLDCVAMDVKAPLRQEKYEMVSGVPCNIKDIRESIRIIMESGIEYEFRTTVCPSQLDGDDIEEIARTIQGAGRYVLQAFRPNHCLDAGMLKIEPYSAEILRGFAARAGAYVGSCCVRGEEGKVLQRNW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTR9</accession>
    <name>A0A0M2UTR9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02299</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO19005.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19005">
        <property type="protein sequence ID" value="KKO19005"/>
        <property type="gene ID" value="BROFUL_02299"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19005.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="43" mass="5025" checksum="59912D874D27BB0E" modified="2015-11-11" version="1">MMVMNNQLKYFLDCPLMVFIVLDVLILQLGIIEIKVNFLRGIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTU0</accession>
    <name>A0A0M2UTU0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03405</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000312">
        <property type="protein sequence ID" value="KKO17894.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17894">
        <property type="protein sequence ID" value="KKO17894"/>
        <property type="gene ID" value="BROFUL_03405"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17894.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="84" mass="9124" checksum="4477C2FAF6F8E18B" modified="2015-11-11" version="1">MSLSCDSATIKKLFSNTFVGTIEILQCDAGLNSRISLPTESTFPRPFYFMGTISALRFSARPASVSLGAIGFLYPKPTVEIRDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU28</accession>
    <name>A0A0M2UU28_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01987</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the MT-A70-like family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19327.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19327">
        <property type="protein sequence ID" value="KKO19327"/>
        <property type="gene ID" value="BROFUL_01987"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090304">
        <property type="term" value="P:nucleic acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007757">
        <property type="entry name" value="MT-A70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05063">
        <property type="entry name" value="MT-A70"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51143">
        <property type="entry name" value="MT_A70"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00489"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19327.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="241" mass="27880" checksum="70F6DC31B9A52659" modified="2015-11-11" version="1">MQKIVNIAQPTAAQDFMSKVCGLYSTILADPPWRFENRTGKMAPEHQRLLRYPTMTIEEICEIPVSQVAAVNSHLYLWVPNALLAEGLEVMKRWGFTYKTNLVWYKIRKDGGPDGRGVGFYFRNVTELVLFGIRGHMRTLQPGRTQVNIISSRKREHSRKPNQIYDVIENCSPGPYLELFARFRREGWDQWGNEDVEKNSLHGVARRKGHGANQMRLFERPVQYEVNKASNKSSVKKRKSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU90</accession>
    <name>A0A0M2UU90_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ribosomal RNA small subunit methyltransferase A</fullName>
            <ecNumber evidence="6">2.1.1.182</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">16S rRNA dimethyladenosine transferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">16S rRNA dimethylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rsmA</name>
        <name evidence="6" type="synonym">ksgA</name>
        <name evidence="9" type="ORF">BROFUL_02148</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>adenosine(1518)/adenosine(1519) in 16S rRNA + 4 S-adenosyl-L-methionine = 4 H(+) + N(6)-dimethyladenosine(1518)/N(6)-dimethyladenosine(1519) in 16S rRNA + 4 S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:19609"/>
            <dbReference type="Rhea" id="RHEA-COMP:10232"/>
            <dbReference type="Rhea" id="RHEA-COMP:10233"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74411"/>
            <dbReference type="ChEBI" id="CHEBI:74493"/>
            <dbReference type="EC" id="2.1.1.182"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.182" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19165">
        <property type="protein sequence ID" value="KKO19165"/>
        <property type="gene ID" value="BROFUL_02148"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2679"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052908">
        <property type="term" value="F:16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00607">
        <property type="entry name" value="16SrRNA_methyltr_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001737">
        <property type="entry name" value="KsgA/Erm"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023165">
        <property type="entry name" value="rRNA_Ade_diMease-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020596">
        <property type="entry name" value="rRNA_Ade_Mease_Trfase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020598">
        <property type="entry name" value="rRNA_Ade_methylase_Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011530">
        <property type="entry name" value="rRNA_adenine_dimethylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11727">
        <property type="entry name" value="PTHR11727"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00398">
        <property type="entry name" value="RrnaAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00650">
        <property type="entry name" value="rADc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00755">
        <property type="entry name" value="ksgA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01131">
        <property type="entry name" value="RRNA_A_DIMETH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51689">
        <property type="entry name" value="SAM_RNA_A_N6_MT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 6 7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="1 6" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="4 6 7" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 6 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="rADc" evidence="8">
        <location>
            <begin position="42"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="35"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="37"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="62"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="83"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="108"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="141"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00607"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00650"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="309" mass="35233" checksum="8EA9E4C4AED74F5E" modified="2015-11-11" version="1">MMPQEEIDFIPHTPSVLKQIFIRRGITPNKRFGQNFLIDQNILLSIPDIAGLTENDIVLEIGTGTGGLTRLLAARSRQVFTIEIDRKLFELSSDILKLYNNVIPINADILETKHELNPRITSLILNWLREHKQAAIKVVSNLPYNISTPVVINLLESDLPIDVMALMLQQEITERMTALPSTREYGILSVIIQLFSDVEIVKTLPPEVFWPRPEVHSAIVKISIRKEKYIGRITDYPFFKKVINAIFTSRRKTLVNSLGSFSVPGITREHLKQILKEMQLDERIRGEVLNLDQLISLSESIGKLKKHLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUA3</accession>
    <name>A0A0M2UUA3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">GDT1 family protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_01874</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Membrane</location>
            <topology evidence="1 6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the GDT1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000194">
        <property type="protein sequence ID" value="KKO19412.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19412">
        <property type="protein sequence ID" value="KKO19412"/>
        <property type="gene ID" value="BROFUL_01874"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001727">
        <property type="entry name" value="Gdt1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12608">
        <property type="entry name" value="PTHR12608"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01169">
        <property type="entry name" value="UPF0016"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="37"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="68"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009190"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU365102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19412.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="90" mass="9688" checksum="6C92F78EB769FB9E" modified="2015-11-11" version="1">MDWKILVSTFITIFLAELGDKTQLASILMTSKTNKPVLVFIGTMLAFAVVTVIGVAAGTIITKFLPIYLIKMGAAIAFIIIGILILFGKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUD4</accession>
    <name>A0A0M2UUD4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_03224</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase U62 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000294">
        <property type="protein sequence ID" value="KKO18094.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18094">
        <property type="protein sequence ID" value="KKO18094"/>
        <property type="gene ID" value="BROFUL_03224"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3969"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045569">
        <property type="entry name" value="Metalloprtase-TldD/E_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045570">
        <property type="entry name" value="Metalloprtase-TldD/E_cen_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002510">
        <property type="entry name" value="Metalloprtase-TldD/E_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025502">
        <property type="entry name" value="TldD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035068">
        <property type="entry name" value="TldD/PmbA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036059">
        <property type="entry name" value="TldD/PmbA_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01523">
        <property type="entry name" value="PmbA_TldD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19289">
        <property type="entry name" value="PmbA_TldD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19290">
        <property type="entry name" value="PmbA_TldD_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004919">
        <property type="entry name" value="TldD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111283">
        <property type="entry name" value="SSF111283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PmbA_TldD" evidence="3">
        <location>
            <begin position="17"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="domain" description="PmbA_TldD_M" evidence="5">
        <location>
            <begin position="106"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="domain" description="PmbA_TldD_C" evidence="4">
        <location>
            <begin position="219"/>
            <end position="452"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005836"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01523"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF19289"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF19290"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18094.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="453" mass="49610" checksum="FF8A1FFEE8AB8336" modified="2015-11-11" version="1">MEKLIKNALKEAKADYVEIRAQEGVNTGITYVGKELENIGENTTFGGCVRALVKGGWGFVAFNDIADLPRYVEMACEQAQCVGKEQSLLAPVPVIHDLVKTKVDTDPADISLTDKQALCHTYNNIILSSKQIQTSNVRYLDSHGTVYFANTEGSFIVQETIFCGISLLAMARDGMNVQQAYHSVGDLRGFNNVRHMENKCQEVAKRAIDLLTAKPVVGGKYTVIVDPKLCGVFIHEAFGHLSEADFIYENKKMREIMVIGKRFGSDALSIVDEGSLVGEAGYNKYDNEGTPTQKTHLIKDGILTSRLHSRETAAKMQEKPTGNARAIGYAHAPIVRMTNTYMEPRDYAFEKMLSEVDNGIYAIGALGGQTNMEMFTFSAEEAYMIRNGKLKEQIKDVVLTGNVFETLMNIDAIGNDLQIHGGLGGCGKGGQSPLRVGDGGPHVRIRNVVIGGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUG0</accession>
    <name>A0A0M2UUG0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01816</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000189">
        <property type="protein sequence ID" value="KKO19477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19477">
        <property type="protein sequence ID" value="KKO19477"/>
        <property type="gene ID" value="BROFUL_01816"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008323">
        <property type="entry name" value="UCP033563"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36454">
        <property type="entry name" value="PTHR36454"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06245">
        <property type="entry name" value="DUF1015"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF033563">
        <property type="entry name" value="UCP033563"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="436" mass="50050" checksum="5DB75B7D1DD6A1EB" modified="2015-11-11" version="1">MAIIKPFRGLRYNQDVITDLSSVMTPPYDVISPQEQERYYQTHPNNIIRLDFGKDFPNDTEKANKYTRAAEFLGAWRKNGIIKREDTPAIYIYDQEFLSGTEWLVRRGFIALVKLEPFDKGSIYPHEQTLPGPKVDRLKLTQACQANLSSIFALFPDEHNAIDADLLTMTDTRPAIDFVDDTRVKNRLWVIKDEQKINSLVARMKEKPLFIADGHHRYETALVYKEQMQKENGNPRNDLPSDYVMMVCVSMNNNGLKILPAHRLVRNIKNYRFDQILPLLQESFKVELLGKGCTVKDFMSHLNNGSEAHAFIMYEGQEDAYYKLQLSNEKVLDVVFAADHPEWRRLDAGILHGVIIDKILGIAASDVTAKDYVKYVKDEADAISFVQSGQYQLAFFLKPTRIEQVREIASARKVMPPKSTYFYPKLVTGIVINSLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUM1</accession>
    <name>A0A0M2UUM1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Hydroxylamine oxidoreductase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">hao_5</name>
        <name evidence="1" type="ORF">BROFUL_01551</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000161">
        <property type="protein sequence ID" value="KKO19738.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19738">
        <property type="protein sequence ID" value="KKO19738"/>
        <property type="gene ID" value="BROFUL_01551"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036280">
        <property type="entry name" value="Multihaem_cyt_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48695">
        <property type="entry name" value="SSF48695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="398"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19738.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="398" mass="45138" checksum="69184B2D638EA291" modified="2015-11-11" version="1" fragment="single">MPSSKACGTSECHETQYSEQGQGGIGSHASCSSFAQVECAWSIERPPGDTAGCTFCHTSPEERCSTCHQRHQFDPKVARKSEQCKTCHWGKDHRDWEAYDIGLHGTVYQVNKWDPKQFDWDKKLADADYVGPTCQYCHMRGGHHNVQRFSTVYASMGMSMADRARRIWKEKRDRWASVCDDCHSPRFAKENLQAMDESVKDAGLKYRETFQIAADLVKDGVADPMPKDLCPDWSGQHIWSLKIGAYHDDPAFGGKAGESGEFRMSNCSDIERLCFESVGYFQTYIYKGMAHGSWNDATYSDGSFGMDRWLVNVKQDASQARRLAALEKKVGITWVPESFWKTGEWLDQLTGPYIVKNHPGKTIFDLCPDPGWLDTHHAPAEEVEYINRKIKELGWKTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUP5</accession>
    <name>A0A0M2UUP5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative DNA polymerase beta subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01764</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000182">
        <property type="protein sequence ID" value="KKO19537.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19537">
        <property type="protein sequence ID" value="KKO19537"/>
        <property type="gene ID" value="BROFUL_01764"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002934">
        <property type="entry name" value="Polymerase_NTP_transf_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01909">
        <property type="entry name" value="NTP_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NTP_transf_2" evidence="1">
        <location>
            <begin position="15"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19537.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="101" mass="11725" checksum="F4C552F60E96ACD8" modified="2015-11-11" version="1">MTRKERFYTVIESNKEYLRELGVISIGIFGSVVRGEDSEHSDYDILVELKKEEKTFRAFTSLCDFLEKNLGNNYELITKESLSPHIGPHRLEEIENVKITS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUT2</accession>
    <name>A0A0M2UUT2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="14">Pyruvate:ferredoxin oxidoreductase</fullName>
            <ecNumber evidence="14">1.2.7.1</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="primary">nifJ</name>
        <name evidence="14" type="ORF">BROFUL_01716</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="12">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="12">Binds 3 [4Fe-4S] clusters per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 9">Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.2.7.1" evidence="14"/>
    <dbReference type="EMBL" id="LAQJ01000177">
        <property type="protein sequence ID" value="KKO19572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19572">
        <property type="protein sequence ID" value="KKO19572"/>
        <property type="gene ID" value="BROFUL_01716"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2124"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019164">
        <property type="term" value="F:pyruvate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022900">
        <property type="term" value="P:electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07034">
        <property type="entry name" value="TPP_PYR_PFOR_IOR-alpha_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.920.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.780.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033412">
        <property type="entry name" value="PFOR_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037112">
        <property type="entry name" value="Pyrv-flavodox_OxR_EKR_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019456">
        <property type="entry name" value="Pyrv-flavodox_OxRtase_EKR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019752">
        <property type="entry name" value="Pyrv/ketoisovalerate_OxRed_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002880">
        <property type="entry name" value="Pyrv_Fd/Flavodoxin_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011895">
        <property type="entry name" value="Pyrv_flavodox_OxRed"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002869">
        <property type="entry name" value="Pyrv_flavodox_OxRed_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011766">
        <property type="entry name" value="TPP_enzyme-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10371">
        <property type="entry name" value="EKR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12838">
        <property type="entry name" value="Fer4_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17147">
        <property type="entry name" value="PFOR_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01558">
        <property type="entry name" value="POR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01855">
        <property type="entry name" value="POR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02775">
        <property type="entry name" value="TPP_enzyme_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000159">
        <property type="entry name" value="NifJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00890">
        <property type="entry name" value="EKR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52922">
        <property type="entry name" value="SSF52922"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53323">
        <property type="entry name" value="SSF53323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02176">
        <property type="entry name" value="pyruv_ox_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
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            <begin position="683"/>
            <end position="712"/>
        </location>
    </feature>
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            <begin position="739"/>
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            <begin position="981"/>
            <end position="984"/>
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            <begin position="1010"/>
            <end position="1015"/>
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            <position position="27"/>
        </location>
        <ligand>
            <name>pyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="60"/>
        </location>
        <ligand>
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="110"/>
        </location>
        <ligand>
            <name>pyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="692"/>
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        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
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        <location>
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        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
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        </ligand>
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            <name>[4Fe-4S] cluster</name>
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            <name>[4Fe-4S] cluster</name>
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            <name>[4Fe-4S] cluster</name>
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            <name>[4Fe-4S] cluster</name>
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        </ligand>
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        <location>
            <position position="832"/>
        </location>
        <ligand>
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </ligand>
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        <location>
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        </location>
    </feature>
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            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
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        </ligand>
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        <location>
            <position position="27"/>
        </location>
    </feature>
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        <location>
            <position position="60"/>
        </location>
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        </location>
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        <source>
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        <source>
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        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
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        <source>
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        </source>
    </evidence>
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            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
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        </source>
    </evidence>
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            <dbReference type="PIRSR" id="PIRSR000159-1"/>
        </source>
    </evidence>
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        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR000159-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KKO19572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1153" mass="125379" checksum="83008E078D118F6B" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUW7</accession>
    <name>A0A0M2UUW7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">CRISPR-associated endonuclease Cas1</fullName>
            <ecNumber evidence="8">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">cas1</name>
        <name evidence="10" type="ORF">BROFUL_01440</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
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                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="8">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer, forms a heterotetramer with a Cas2 homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the CRISPR-associated endonuclease Cas1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="8"/>
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        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19838">
        <property type="protein sequence ID" value="KKO19838"/>
        <property type="gene ID" value="BROFUL_01440"/>
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        <property type="project" value="UniProtKB-KW"/>
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        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
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        <property type="project" value="InterPro"/>
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    </dbReference>
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    </dbReference>
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    <dbReference type="InterPro" id="IPR000477">
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        <property type="match status" value="1"/>
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        <property type="entry name" value="SSF56672"/>
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    </dbReference>
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    </dbReference>
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    <keyword evidence="4 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8" id="KW-0464">Manganese</keyword>
    <keyword evidence="2 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1 8" id="KW-0540">Nuclease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
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        <location>
            <begin position="91"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="520"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
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        <location>
            <position position="585"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
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        <location>
            <position position="600"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19838.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="688" mass="78606" checksum="6AAEF8F9F866B4A7" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUX4</accession>
    <name>A0A0M2UUX4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02501</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
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                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000234">
        <property type="protein sequence ID" value="KKO18791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18791">
        <property type="protein sequence ID" value="KKO18791"/>
        <property type="gene ID" value="BROFUL_02501"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="76" mass="8715" checksum="DF32BAC0396B93F8" modified="2015-11-11" version="1">MAYGYSIDHATLEIMRMTAVRMVKRGIRVEDIAEGMRLNRSTVFGWLQKYRQHGLNPTFAIRGVCNPLSQENQGVM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUZ0</accession>
    <name>A0A0M2UUZ0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GDSL-like Lipase/Acylhydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01855</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000191">
        <property type="protein sequence ID" value="KKO19440.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19440">
        <property type="protein sequence ID" value="KKO19440"/>
        <property type="gene ID" value="BROFUL_01855"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="76"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19440.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="411" mass="47973" checksum="D16EF1CE8EFEDCC8" modified="2015-11-11" version="1">MKIKLTKETVFFPLGIVFIFAGIICNTWLLARFSPDGIFDFSTKLKIWIIEVFCIAVGFCLIKYRSSIKLPRYREILFSFVTFLLFILLFEGGLRVFYFIKHKTKESEMDFADYLGWESTPDNFWKREVKGYGEIKYSTTRYGFRVFGDVDSKKTKIFVIGDSFTQGTTVSDGETYYDYLRKSNEDIEIFTYACGGYGSLQEYMILDKYYDVIKPHVILWQFCSNDIINNDFDLESASFRNNNQMRRPYLQDGKIKWLYPKQKSGWLVQTSYLLRLLDIKMNILRAEKYGSIEDTLSNTHPLFIRAAKTTGEIMSSVKKRASDVPIVAFSTDKPTWLGDTYFEICEKNGIHYIPGIPEAMEEAKRNGIIIDYPPYDAHWNKIGHVIAGKIILKYFIENKFIHSSPVKIQWE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV09</accession>
    <name>A0A0M2UV09_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Molybdopterin-guanine dinucleotide biosynthesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01839</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000190">
        <property type="protein sequence ID" value="KKO19460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19460">
        <property type="protein sequence ID" value="KKO19460"/>
        <property type="gene ID" value="BROFUL_01839"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004435">
        <property type="entry name" value="MobB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03205">
        <property type="entry name" value="MobB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00176">
        <property type="entry name" value="mobB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MobB" evidence="1">
        <location>
            <begin position="42"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="201" mass="22892" checksum="090A565C41027218" modified="2015-11-11" version="1">MTRYARDATIFFIQNGLKRLAIQALPFFRIPDKYTLSKAIPVVLIVGKQNTGKTSLIETLIPLLKKRGYRVGTIKYNVPSFQIDYEGKDTYRHFGAGADIVSISSPAKLAIIKRVVGKSPAIKTLIESNYRDVDIILVEGYKRWNYPAIEIINNRQRVIAKSKRSKHRLQIISIAKTPLQMPGFSQDDIDKVIQFIESRIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV11</accession>
    <name>A0A0M2UV11_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">N-acetylmuramoyl-L-alanine amidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01672</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the N-acetylmuramoyl-L-alanine amidase 2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19637">
        <property type="protein sequence ID" value="KKO19637"/>
        <property type="gene ID" value="BROFUL_01672"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008745">
        <property type="term" value="F:N-acetylmuramoyl-L-alanine amidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009253">
        <property type="term" value="P:peptidoglycan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06583">
        <property type="entry name" value="PGRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.80.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036505">
        <property type="entry name" value="Amidase/PGRP_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002502">
        <property type="entry name" value="Amidase_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015510">
        <property type="entry name" value="PGRP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006619">
        <property type="entry name" value="PGRP_domain_met/bac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11022">
        <property type="entry name" value="PTHR11022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01510">
        <property type="entry name" value="Amidase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00644">
        <property type="entry name" value="Ami_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00701">
        <property type="entry name" value="PGRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55846">
        <property type="entry name" value="SSF55846"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetylmuramoyl-L-alanine amidase" evidence="2">
        <location>
            <begin position="53"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="domain" description="PGRP" evidence="3">
        <location>
            <begin position="55"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00644"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="204" mass="23228" checksum="89C1ED78E31653B9" modified="2015-11-11" version="1">MRFTEKFYLCLSLLVLIYLSGCYAPPAFKPITTVPVRPPKKEVPCKETPYIESQLNRYSVREWKYIVIHHSASASGCAAEFDRYHREKRGWENGLGYHFVIGNGSGAGDGQIEIGNRWVKQIDGAHAGVQEYNRYGIGICLVGNFNGSYPTSAQMASLSTLVGYLQERCHIPSENIIMHRHFRETECPGRNFPYYKLLAKTARW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV85</accession>
    <name>A0A0M2UV85_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Spore coat protein A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">cotA</name>
        <name evidence="2" type="ORF">BROFUL_02920</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18414">
        <property type="protein sequence ID" value="KKO18414"/>
        <property type="gene ID" value="BROFUL_02920"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3612"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011706">
        <property type="entry name" value="Cu-oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045087">
        <property type="entry name" value="Cu-oxidase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11709">
        <property type="entry name" value="PTHR11709"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07731">
        <property type="entry name" value="Cu-oxidase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49503">
        <property type="entry name" value="SSF49503"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0167">Capsid protein</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0946">Virion</keyword>
    <feature type="domain" description="Plastocyanin-like" evidence="1">
        <location>
            <begin position="545"/>
            <end position="645"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07731"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="660" mass="72098" checksum="31955611ADF75F7F" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV89</accession>
    <name>A0A0M2UV89_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF2281 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01321</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000138">
        <property type="protein sequence ID" value="KKO19973.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19973">
        <property type="protein sequence ID" value="KKO19973"/>
        <property type="gene ID" value="BROFUL_01321"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1634"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018739">
        <property type="entry name" value="DUF2281"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10047">
        <property type="entry name" value="DUF2281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF2281" evidence="1">
        <location>
            <begin position="21"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19973.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="84" mass="9932" checksum="FC3BE72023B66936" modified="2015-11-11" version="1">MRLRLLLWVSGGYDMSLTERIIENVKTLPELKQREVLDFVEYLRSRAEKEEKIEWNALSLSSAMRGMEDEKSPYSMNDLKETFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVA2</accession>
    <name>A0A0M2UVA2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01548</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000160">
        <property type="protein sequence ID" value="KKO19747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19747">
        <property type="protein sequence ID" value="KKO19747"/>
        <property type="gene ID" value="BROFUL_01548"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="24"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="55"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="83"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="140"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="178"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="204"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="236"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="263"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="294"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="26"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="175"/>
            <end position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="310" mass="34775" checksum="41B3C52730AC6EBC" modified="2015-11-11" version="1">MENTAFIGIFQKTKSYLLFHESGLNWFLLSLSCAFFTASADALCKKSLPGSNEYLIAWVRIGFATPFLLILLPFIEIPRLDRHYFIAILLLLPLEIIALILYMKAIKLSPLSITLPFLALSPIFMIFTSDFILGERLGKYGIGGIILTVIGAYLLNVRATRKGILEPFKAIQRERGSLYMIIVAFIYSVTSNLGKMAVVHSSPLFFAATYLPLLSVIFFPVLLWKNQGKMRQVFSHITLFSPIGFAIALATITHFLAVNRAEIAYVISVKRMSLLFGILYGACWFRETNIRERLIGSMVMIAGVIIITVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVA4</accession>
    <name>A0A0M2UVA4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 10">Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase</fullName>
            <shortName evidence="10">NN:DBI PRT</shortName>
            <ecNumber evidence="4 10">2.4.2.21</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9 10">N(1)-alpha-phosphoribosyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">cobT</name>
        <name evidence="11" type="ORF">BROFUL_01257</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>5,6-dimethylbenzimidazole + nicotinate beta-D-ribonucleotide = alpha-ribazole 5'-phosphate + H(+) + nicotinate</text>
            <dbReference type="Rhea" id="RHEA:11196"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15890"/>
            <dbReference type="ChEBI" id="CHEBI:32544"/>
            <dbReference type="ChEBI" id="CHEBI:57502"/>
            <dbReference type="ChEBI" id="CHEBI:57918"/>
            <dbReference type="EC" id="2.4.2.21"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 10">Nucleoside biosynthesis; alpha-ribazole biosynthesis; alpha-ribazole from 5,6-dimethylbenzimidazole: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the CobT family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.21" evidence="4 10"/>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO19988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19988">
        <property type="protein sequence ID" value="KKO19988"/>
        <property type="gene ID" value="BROFUL_01257"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1554"/>
    <dbReference type="UniPathway" id="UPA00061">
        <property type="reaction ID" value="UER00516"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008939">
        <property type="term" value="F:nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02439">
        <property type="entry name" value="DMB-PRT_CobT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1610.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10210">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00230">
        <property type="entry name" value="CobT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003200">
        <property type="entry name" value="Nict_dMeBzImd_PRibTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017846">
        <property type="entry name" value="Nict_dMeBzImd_PRibTrfase_bact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023195">
        <property type="entry name" value="Nict_dMeBzImd_PRibTrfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036087">
        <property type="entry name" value="Nict_dMeBzImd_PRibTrfase_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02277">
        <property type="entry name" value="DBI_PRT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52733">
        <property type="entry name" value="SSF52733"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03160">
        <property type="entry name" value="cobT_DBIPRT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 10" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="7 10 11" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 10 11" id="KW-0808">Transferase</keyword>
    <feature type="active site" description="Proton acceptor" evidence="10">
        <location>
            <position position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00015486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00030686"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO19988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="338" mass="35805" checksum="99F52421B7B5B596" modified="2015-11-11" version="1">MDATGDIEAKFKAFAIPRGSLGRLEELAMVYASIKGTVDCTIRHKKIFTMAGDHGVVEEGVSAFPQQVTRQMVQNFIDGRAAINVLARHIGAKVIVVDCGVASYLQLQPGLKIRKIGLGTKNIAVEPAMSREEAVRSIEAGIELVEEERKEGVDIIGTGDMGIANTTPSSALLSVLGGMDVVAATGRGAGLDEGLLQRKMAVIKKAIDINQPNRHDPIDVLAKVGGYEIGGIAGLCLGAARYRIPIVLDGFISTAGALIADALEPKVNKYLIASHVSAEKGHKMMLKLLNKNPILDLNMRLGEGTGAALGINLVEAGVRLLHEMATFQEAGVSEPNLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVC2</accession>
    <name>A0A0M2UVC2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01525</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000157">
        <property type="protein sequence ID" value="KKO19767.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19767">
        <property type="protein sequence ID" value="KKO19767"/>
        <property type="gene ID" value="BROFUL_01525"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19767.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="439" mass="49786" checksum="6119C7B80E5F90B1" modified="2015-11-11" version="1">MTELAPLLTEYDKVADSEGSLDPLGLSLIADRLGTRLVPGVRERMRHPRFLTAMAAGAFVCAEFDDDQVAGDGITPPYQVYEWYAVQALVGTFRNATSEILGLPGREKATDAMRKGKPLCAQNYLKAPSVFGFHGVYRTLAEDLDILRQGRLGEAGNCLIRIWETEQDLAGFCSREQGPGSSLRQALTNAVKDGLTKSGVAREWNWKWNSIIAEKFAPYRAKAKENESLFIMLCEEPSSNRSQIIRFLISNEGSRLWLKNQAEKELHVALLKSASPDLRELLECIRSYEHFARLIQDAFDDCLWYMSGKQRKTNIKELAGLEAVKHAHKDVPDAFSKAYDRLHLSGYASGFIDGFGDLRVNGNCETWVGQLLEHHFAVQKKKPPLGKNPWIDRYDDNTYCVRPLYRRDEPARMDDSYVHPYRTNAIWSFLRDLKRVSNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVH8</accession>
    <name>A0A0M2UVH8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01687</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0751 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000176">
        <property type="protein sequence ID" value="KKO19580.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19580">
        <property type="protein sequence ID" value="KKO19580"/>
        <property type="gene ID" value="BROFUL_01687"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016772">
        <property type="entry name" value="UCP020408"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10087">
        <property type="entry name" value="DUF2325"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF020408">
        <property type="entry name" value="UCP020408"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19580.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="105" mass="11905" checksum="C8BF8B5F89E3F243" modified="2015-11-11" version="1">MSVLIVGGDHLGSIPKELNKIDVTDVRHITGRSGQKIRDEIPEAIDFIIMLCDFVNHNLAYKIKKSAENKDIPILYAKRSWASIYQKMKECQSQLRKAGLPLVLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVK5</accession>
    <name>A0A0M2UVK5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 7">6,7-dimethyl-8-ribityllumazine synthase</fullName>
            <shortName evidence="7">DMRL synthase</shortName>
            <shortName evidence="7">LS</shortName>
            <shortName evidence="7">Lumazine synthase</shortName>
            <ecNumber evidence="4 7">2.5.1.78</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">ribH</name>
        <name evidence="8" type="ORF">BROFUL_01168</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>(2S)-2-hydroxy-3-oxobutyl phosphate + 5-amino-6-(D-ribitylamino)uracil = 6,7-dimethyl-8-(1-D-ribityl)lumazine + H(+) + 2 H2O + phosphate</text>
            <dbReference type="Rhea" id="RHEA:26152"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15934"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58201"/>
            <dbReference type="ChEBI" id="CHEBI:58830"/>
            <dbReference type="EC" id="2.5.1.78"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Cofactor biosynthesis; riboflavin biosynthesis; riboflavin from 2-hydroxy-3-oxobutyl phosphate and 5-amino-6-(D-ribitylamino)uracil: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the DMRL synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.78" evidence="4 7"/>
    <dbReference type="EMBL" id="LAQJ01000126">
        <property type="protein sequence ID" value="KKO20093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20093">
        <property type="protein sequence ID" value="KKO20093"/>
        <property type="gene ID" value="BROFUL_01168"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1447"/>
    <dbReference type="UniPathway" id="UPA00275">
        <property type="reaction ID" value="UER00404"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009349">
        <property type="term" value="C:riboflavin synthase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000906">
        <property type="term" value="F:6,7-dimethyl-8-ribityllumazine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd09209">
        <property type="entry name" value="Lumazine_synthase-I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.960">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00178">
        <property type="entry name" value="Lumazine_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034964">
        <property type="entry name" value="LS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002180">
        <property type="entry name" value="LS/RS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036467">
        <property type="entry name" value="LS/RS_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21058">
        <property type="entry name" value="PTHR21058"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00885">
        <property type="entry name" value="DMRL_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52121">
        <property type="entry name" value="SSF52121"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00114">
        <property type="entry name" value="lumazine-synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0686">Riboflavin biosynthesis</keyword>
    <keyword evidence="6 7" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="5-amino-6-(D-ribitylamino)uracil binding" evidence="7">
        <location>
            <begin position="57"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="region of interest" description="5-amino-6-(D-ribitylamino)uracil binding" evidence="7">
        <location>
            <begin position="81"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="region of interest" description="1-deoxy-L-glycero-tetrulose 4-phosphate binding" evidence="7">
        <location>
            <begin position="86"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="7">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="23"/>
        </location>
        <ligand>
            <name>5-amino-6-(D-ribitylamino)uracil</name>
            <dbReference type="ChEBI" id="CHEBI:15934"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="114"/>
        </location>
        <ligand>
            <name>5-amino-6-(D-ribitylamino)uracil</name>
            <dbReference type="ChEBI" id="CHEBI:15934"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="128"/>
        </location>
        <ligand>
            <name>(2S)-2-hydroxy-3-oxobutyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58830"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007424"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00178"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="164" mass="17291" checksum="D5BDA4C4158CD803" modified="2015-11-11" version="1">MAKEFQGNVLGAGKVFGIIVSRYNNFITQRLLDGALDGLTRHGVKDEDIDIFWVPGACEIPIAALKAAESRKYHALICLGAILRGETPHFDYVANESAKGIAHVGLTTGVPTIYGVITTETLEQAINRAGAKTGNKGAEAALSAIEMANLIDQISAGGKTAKKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVM1</accession>
    <name>A0A0M2UVM1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">NAD_synthase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01406</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000145">
        <property type="protein sequence ID" value="KKO19892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19892">
        <property type="protein sequence ID" value="KKO19892"/>
        <property type="gene ID" value="BROFUL_01406"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1731"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016783">
        <property type="term" value="F:sulfurtransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01990">
        <property type="entry name" value="Alpha_ANH_like_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005232">
        <property type="entry name" value="LarE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022310">
        <property type="entry name" value="NAD/GMP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43169:SF2">
        <property type="entry name" value="PTHR43169:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02540">
        <property type="entry name" value="NAD_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006661">
        <property type="entry name" value="PP-lp_UCP006661"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00268">
        <property type="entry name" value="TIGR00268"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD_synthase" evidence="2">
        <location>
            <begin position="16"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile and sulfur donor" evidence="1">
        <location>
            <position position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR006661-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="274" mass="30804" checksum="A5841627FF1CCC11" modified="2015-11-11" version="1">MNTEEKLNNLRDTIKALESVVVAFSGGVDSSLVAKVCYDVLGDKSIAVTARSETYPEYEYEEAKKIAKEIGIPHLTIDTSELGIDGFAQNPPNRCYFCKSELFGKLKVIAREKGYKYVADGANLDDTGEYRPGLDAAKELEVRSPLKESGLRKADVREISKYLKLSSWDKPPYACMSSRFPYGNAITEEKLAIVAAAENYLRSIGLRQFRVRHHDTIARIEVLPEDIPALLQNGKRKELVKKFKEIGYKYVTIDMEGYRSGSMNEVLTQQKEKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVS0</accession>
    <name>A0A0M2UVS0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative transporter protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01597</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19665">
        <property type="protein sequence ID" value="KKO19665"/>
        <property type="gene ID" value="BROFUL_01597"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1976"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032317">
        <property type="entry name" value="HlyD_D23"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006143">
        <property type="entry name" value="RND_pump_MFP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16576">
        <property type="entry name" value="HlyD_D23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01730">
        <property type="entry name" value="RND_mfp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="26"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="domain" description="HlyD_D23" evidence="3">
        <location>
            <begin position="81"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="407" mass="44255" checksum="AEF8A59F2B4FDAA3" modified="2015-11-11" version="1">MSQKDLLKLTIDKSIKGIRPVRHKKPYYRTALAVIMIAGMVFLYLSGALTPAISVEVASVTRLYPSQALTLLNASGYVVAQRRAAVASKITGRLVALSVEEGSRVKEGEIIARLENEDVLALRNQAVADLSVARFNLLQAKAELNDARVSFRREKDLLAKGITTPAEYDAATARYQKARAAVAGANASIKARAAALQVAKVSLEYTLIRAPFDAVVLTKNADIGDIVTPIGAAANAKAAVVTIADMDSLQVEADVSESNLEMVKMKQPCEIQLDALPGSRFRGEVHMIVPTADRSKATVMVKVRFLENDSRILPEMSAKVAFLSRPIEREEQKPLTAINPGAIVTRNGKHFVFLIQDNRVVQTSIKPGITIGDMIEVLDGVKHDDKIAVKPVNKLRDGSKIKVKNER</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVS7</accession>
    <name>A0A0M2UVS7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02205</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000220">
        <property type="protein sequence ID" value="KKO19091.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19091">
        <property type="protein sequence ID" value="KKO19091"/>
        <property type="gene ID" value="BROFUL_02205"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="SSF56672"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="53"/>
            <end position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19091.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="303" mass="34729" checksum="0D792AE16932A8C7" modified="2015-11-11" version="1">MFWKRNNLYNDIHTDQNLTAAWNAIKSNGKVAGVDGISVQHYQGNLFLNLKLLQRELEERTYSPQPIKRFSFTKADGSKRMLGILTVRDKIVQRALYQVIEPIFERSFEDISYGYRKNRSVTEAIEHLKGYIDQGNHWIAHGDIARFFDNIDTVQLGKQITRKIDNQMILHLIHGWLDQEGAFSKTEAAPVRKKGILQGGILSPLFGNIYLDCFDKKATAQGLNIVRYADNVILIAENRCEAKKGVNQIRQLLREADLHLNERKTIITHLENGITLLGKRLILCKHGKEVTLSIQDAQKPQLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVX7</accession>
    <name>A0A0M2UVX7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01068</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20218">
        <property type="protein sequence ID" value="KKO20218"/>
        <property type="gene ID" value="BROFUL_01068"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007367">
        <property type="entry name" value="DUF433"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04255">
        <property type="entry name" value="DUF433"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="33" mass="3816" checksum="20533BDDEC32EB93" modified="2015-11-11" version="1">MDWRNHIVSAPDVLRGEPRIKETRIPVSLIPGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW11</accession>
    <name>A0A0M2UW11_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">CoA-substrate-specific enzyme activase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02641</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the FldB/FldC dehydratase alpha/beta subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18689.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18689">
        <property type="protein sequence ID" value="KKO18689"/>
        <property type="gene ID" value="BROFUL_02641"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3276"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002731">
        <property type="entry name" value="ATPase_BadF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008275">
        <property type="entry name" value="CoA_E_activase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010327">
        <property type="entry name" value="FldB/FldC_alpha/beta"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01869">
        <property type="entry name" value="BcrAD_BadFG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06050">
        <property type="entry name" value="HGD-D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00241">
        <property type="entry name" value="CoA_E_activ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BcrAD_BadFG" evidence="4">
        <location>
            <begin position="4"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01869"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18689.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="641" mass="71491" checksum="EB07AEE62ACF7021" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW18</accession>
    <name>A0A0M2UW18_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01496</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000155">
        <property type="protein sequence ID" value="KKO19770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19770">
        <property type="protein sequence ID" value="KKO19770"/>
        <property type="gene ID" value="BROFUL_01496"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="23" mass="2701" checksum="E9BBECDEEC17F1C7" modified="2015-11-11" version="1" fragment="single">MKSISFSFDNFDLIINPFEFTGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWC6</accession>
    <name>A0A0M2UWC6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Tyrosine--tRNA ligase</fullName>
            <ecNumber evidence="8">6.1.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Tyrosyl-tRNA synthetase</fullName>
            <shortName evidence="8">TyrRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">tyrS</name>
        <name evidence="10" type="ORF">BROFUL_02470</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>ATP + L-tyrosine + tRNA(Tyr) = AMP + diphosphate + H(+) + L-tyrosyl-tRNA(Tyr)</text>
            <dbReference type="Rhea" id="RHEA:10220"/>
            <dbReference type="Rhea" id="RHEA-COMP:9706"/>
            <dbReference type="Rhea" id="RHEA-COMP:9707"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58315"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78536"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.1"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.1" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18809">
        <property type="protein sequence ID" value="KKO18809"/>
        <property type="gene ID" value="BROFUL_02470"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3069"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004831">
        <property type="term" value="F:tyrosine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006437">
        <property type="term" value="P:tyrosyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00805">
        <property type="entry name" value="TyrRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02007">
        <property type="entry name" value="Tyr_tRNA_synth_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002305">
        <property type="entry name" value="aa-tRNA-synth_Ic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002307">
        <property type="entry name" value="Tyr-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024088">
        <property type="entry name" value="Tyr-tRNA-ligase_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024108">
        <property type="entry name" value="Tyr-tRNA-ligase_bac_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11766">
        <property type="entry name" value="PTHR11766"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11766:SF1">
        <property type="entry name" value="PTHR11766:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00579">
        <property type="entry name" value="tRNA-synt_1b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01040">
        <property type="entry name" value="TRNASYNTHTYR"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00234">
        <property type="entry name" value="tyrS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8 9" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="5 8 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 8 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 8 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 8 9" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="8">
        <location>
            <begin position="231"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="234"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU363036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO18809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="405" mass="45375" checksum="18DD703E60A625CC" modified="2015-11-11" version="1">MFKDVDEQLEILLRGTVDIVTKEELAKKLKRSHEERRPLRVKLGLDPTAPDIHIGNAIPIHKLRAFQSLGHTAILIIGDYTATVGDPSGVNKTRPMITYEKVLENARTYLLQAGQILDLKKTEVIYNSEWFKKMTFHDVIQLTAKMTVARMMERDDFTKRYNAGIPISVHEFIYPLMQGYDSIMVKSDVELGGTDQLFSLLVGRDLQRDAGVEPQIALTTPLLEGIDGNKKMSKSLGNYIGVTEPPGEMFGKAMSIPDNLMRKYFELATDLNTDEINKLLDVHTHPRAAKAAMAKAIVQRYHDRKDAEAAAAEFDRVFKEHALPDTIPDVEISGSELADGKIWIAKLIVLCSFATTNSEARRLVQQGGVSLNNDPINDPTLNIEIQPGMVLKVGKRRFARIVLKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWE9</accession>
    <name>A0A0M2UWE9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01380</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000142">
        <property type="protein sequence ID" value="KKO19905.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19905">
        <property type="protein sequence ID" value="KKO19905"/>
        <property type="gene ID" value="BROFUL_01380"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014942">
        <property type="entry name" value="AbiEii"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08843">
        <property type="entry name" value="AbiEii"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19905.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="198" mass="22276" checksum="42C217CEBC7A3B50" modified="2015-11-11" version="1">MAGGTAVAIYLNHRVSVDIDLFTEKEFYCSSIIVPIGQRYVTTITNPAEKNTLTAMVANVRFSLFHYPYPLLKPLVNKPECNIGLASPEDIAAMKVVAITQRGSAKDFVDLHALIGAFGLPLDYLIVQVLKKYGVSGDYGYQIKRSLVYFDDAVRSLGDVTVMRNEKEVRLDRHEWTKIEEFFKSLVLGRYTPQAHNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWI2</accession>
    <name>A0A0M2UWI2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CRISPR-associated protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02415</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000231">
        <property type="protein sequence ID" value="KKO18869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18869">
        <property type="protein sequence ID" value="KKO18869"/>
        <property type="gene ID" value="BROFUL_02415"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.2220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038242">
        <property type="entry name" value="Cmr2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024615">
        <property type="entry name" value="CRISPR-assoc_Cmr2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013407">
        <property type="entry name" value="CRISPR-assoc_prot_Cmr2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12469">
        <property type="entry name" value="DUF3692"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02577">
        <property type="entry name" value="cas_TM1794_Cmr2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GGDEF" evidence="1">
        <location>
            <begin position="315"/>
            <end position="455"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="561" mass="63991" checksum="7123FB33BA841683" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWR3</accession>
    <name>A0A0M2UWR3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Ammonium transporter protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_01873</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000194">
        <property type="protein sequence ID" value="KKO19411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19411">
        <property type="protein sequence ID" value="KKO19411"/>
        <property type="gene ID" value="BROFUL_01873"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2337"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008519">
        <property type="term" value="F:ammonium transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029020">
        <property type="entry name" value="Ammonium/urea_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024041">
        <property type="entry name" value="NH4_transpt_AmtB-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002229">
        <property type="entry name" value="RhesusRHD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00909">
        <property type="entry name" value="Ammonium_transp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00342">
        <property type="entry name" value="RHESUSRHD"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="115"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="138"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="176"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="201"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="232"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="275"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="301"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="334"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="359"/>
            <end position="379"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="391"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="422"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="domain" description="Ammonium_transp" evidence="6">
        <location>
            <begin position="110"/>
            <end position="440"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19411.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="463" mass="49509" checksum="C22A80BABCDC9D01" modified="2015-11-11" version="1">MAVRRVLGLCVGLCLGLISIGAIGHSYGAETLQQQSLDHAVFSITENQGDAHAWSSIEQAGGMDAERHTLLLASNSGESQTTGKAEPVPVQGGVHGGGVTKAMEDFLELAKYGKAIHVMAMLMVGFGFLMVFVKRYGYGAVTATYVAVSIVLPYYMFLKKMHIFGEPAELTMDRLILAEFCAASILIATGAFLGRLKMSQYIIMSLIFVPSYMLNEWIMLDNGMGLIPKGQLIDTGGSIVIHQFGAYFGLGVIVRMTTSEDFNKKIESDKISNQFSMLGSMVLWIFWPSFCAAPAEISKMPMAAVNTVLSLCGATVSTYIASTMIRKKIAIEDMANAALAGGVAIGSSCAHTTPKASLALGFIAGILSVVGFALIQPRIQRAIKGIDTCGVHNLHGMPGILGGLAAIFIAKDVVPGLQIKGVFVTFIIAWITGLAAGTIISLFGYRKQSYEDAVEFIIEEEHH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWU4</accession>
    <name>A0A0M2UWU4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sialidase</fullName>
            <ecNumber evidence="2">3.2.1.18</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">nedA</name>
        <name evidence="2" type="ORF">BROFUL_01856</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.18" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000191">
        <property type="protein sequence ID" value="KKO19441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19441">
        <property type="protein sequence ID" value="KKO19441"/>
        <property type="gene ID" value="BROFUL_01856"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052794">
        <property type="term" value="F:exo-alpha-(2-&gt;3)-sialidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052795">
        <property type="term" value="F:exo-alpha-(2-&gt;6)-sialidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052796">
        <property type="term" value="F:exo-alpha-(2-&gt;8)-sialidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008152">
        <property type="term" value="P:metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000421">
        <property type="entry name" value="FA58C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00754">
        <property type="entry name" value="F5_F8_type_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="SSF49785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50022">
        <property type="entry name" value="FA58C_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F5/8 type C" evidence="1">
        <location>
            <begin position="1"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50022"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="136" mass="15416" checksum="FA71E3F01F483BAC" modified="2015-11-11" version="1">MVCGQQESVGENAPAVNAFDENPGTYWHTKWFQGSDPLPHEIQINLGAVYNVSGFRYLPRTDDEDNGRIKHWEFYVSMDGTNWESAVATGIFVNDALEKEVFFPQKAGQYVRLRALSEVNNNPWTSMAEITVLQSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX35</accession>
    <name>A0A0M2UX35_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01763</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000182">
        <property type="protein sequence ID" value="KKO19536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19536">
        <property type="protein sequence ID" value="KKO19536"/>
        <property type="gene ID" value="BROFUL_01763"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2185"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0110001">
        <property type="term" value="C:toxin-antitoxin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008201">
        <property type="entry name" value="HepT-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01934">
        <property type="entry name" value="DUF86"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-1277">Toxin-antitoxin system</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="94" mass="11020" checksum="49260851411A00E9" modified="2015-11-11" version="1">MSKLPLEYLKHILEEIEFIINELNSISEDDFYKNPVLKIASVRSLEIIGEATKNISDAFRERHSNVDWKNMARMRDKLIHHYFGINVFTPQASV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX82</accession>
    <name>A0A0M2UX82_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Site-specific DNA-methyltransferase (adenine-specific)</fullName>
            <ecNumber evidence="2">2.1.1.72</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00797</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 2'-deoxyadenosine in DNA + S-adenosyl-L-methionine = an N(6)-methyl-2'-deoxyadenosine in DNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:15197"/>
            <dbReference type="Rhea" id="RHEA-COMP:12418"/>
            <dbReference type="Rhea" id="RHEA-COMP:12419"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:90615"/>
            <dbReference type="ChEBI" id="CHEBI:90616"/>
            <dbReference type="EC" id="2.1.1.72"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.72" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000101">
        <property type="protein sequence ID" value="KKO20482.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20482">
        <property type="protein sequence ID" value="KKO20482"/>
        <property type="gene ID" value="BROFUL_00797"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1011"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008170">
        <property type="term" value="F:N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009007">
        <property type="term" value="F:site-specific DNA-methyltransferase (adenine-specific) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022749">
        <property type="entry name" value="D12N6_MeTrfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003356">
        <property type="entry name" value="DNA_methylase_A-5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038333">
        <property type="entry name" value="T1MK-like_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12161">
        <property type="entry name" value="HsdM_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02384">
        <property type="entry name" value="N6_Mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HsdM_N" evidence="4">
        <location>
            <begin position="5"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="domain" description="N6_Mtase" evidence="3">
        <location>
            <begin position="114"/>
            <end position="422"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF12161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20482.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="469" mass="53287" checksum="54512450FD3CBD20" modified="2015-11-11" version="1">MSDIVNKLWGFCHTLRHDGIDYGDYIEQLTYLLFLKMADEKGVCIPKDCTWESLKKESGTSLLDHYSDVLRKLREEKGLLGDIFAQAMPRFNNAVNLKRLITMIDDEKWTEMDVDVKGAAFEGLLEKAASEGKKGAGQYFTPRPLIQSIVGVMKPDPRETPDFTICDPACGTGGFLMRAYEWLMEITKGALDRKDVKRIKTATYYGQELVPRPRRLALMNLFLHGLEPKIYLGDSIYESKRGEQYHCILTNPPFGTKGANQAPERDDFTIATSNKQLNFIQHVMNILRRGGRAAIVLPDNCLFEDKAGDVFEILMHDCNLHTILRLPRGTFTPYSPGVKANVIFFQKGVPTENVWIFDARSNVPGITKKERPLTHAHFEEFEKCYGKDPNGQGKRQDLGEEGRFRKFHISDIKERDYKLDITWLKDETIEDADSLPEPQDLASEAITELEAVVDDLRDVLQLIEANGGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX83</accession>
    <name>A0A0M2UX83_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Cell shape-determining protein MreB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">mreB</name>
        <name evidence="3" type="ORF">BROFUL_00606</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Forms membrane-associated dynamic filaments that are essential for cell shape determination. Acts by regulating cell wall synthesis and cell elongation, and thus cell shape. A feedback loop between cell geometry and MreB localization may maintain elongated cell shape by targeting cell wall growth to regions of negative cell wall curvature.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Forms polymers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="2">Membrane-associated.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the FtsA/MreB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000083">
        <property type="protein sequence ID" value="KKO20678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20678">
        <property type="protein sequence ID" value="KKO20678"/>
        <property type="gene ID" value="BROFUL_00606"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.764"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000902">
        <property type="term" value="P:cell morphogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd10225">
        <property type="entry name" value="MreB_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02207">
        <property type="entry name" value="MreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004753">
        <property type="entry name" value="MreB"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01652">
        <property type="entry name" value="SHAPEPROTEIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00904">
        <property type="entry name" value="mreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0133">Cell shape</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="21"/>
            <end position="23"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="169"/>
            <end position="171"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="217"/>
            <end position="220"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="297"/>
            <end position="300"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02207"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20678.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="351" mass="37352" checksum="695F591C32FCAD54" modified="2015-11-11" version="1">MHPLDFILGFVSTDMGIDLGTANTLVCIPGQGIVLSEPSVVAVKPGTNKVLLNGNAVGNVAKAMLEKAPSSISVIRPLKNGVIADFDITEAMLKYFITRVHKRKWGVRPRVLIAIPSGITAVEKRAVVNSAERAGAREVYLVSEPKAAAIGVGLPVGEPIASMIVDIGGGTTEVAVLSLGDIFTHESLRIAGDEFDESILQYIRKTYNLDIGHRTSEQIKIEIGSAYPLEEELTMEIRGRDAIAGLPRAATITSEEIREALKEPIDKIVGAVKSALERTAPELASDLITNGLVVVGGGALIRGMDKLLIAETGLPVQIGNDPLTAVARGTGYLLENLDLFKSVLQDEDIHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXI4</accession>
    <name>A0A0M2UXI4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">MEMO1 family protein BROFUL_00696</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00696</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the MEMO1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20577">
        <property type="protein sequence ID" value="KKO20577"/>
        <property type="gene ID" value="BROFUL_00696"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.883"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd07361">
        <property type="entry name" value="MEMO_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.700.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00055">
        <property type="entry name" value="MEMO1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023473">
        <property type="entry name" value="AMMECR1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036071">
        <property type="entry name" value="AMMECR1_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002733">
        <property type="entry name" value="AMMECR1_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027485">
        <property type="entry name" value="AMMECR1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027623">
        <property type="entry name" value="AmmeMemoSam_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002737">
        <property type="entry name" value="MEMO1_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11060">
        <property type="entry name" value="PTHR11060"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01871">
        <property type="entry name" value="AMMECR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01875">
        <property type="entry name" value="Memo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143447">
        <property type="entry name" value="SSF143447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04335">
        <property type="entry name" value="AmmeMemoSam_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00296">
        <property type="entry name" value="TIGR00296"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51112">
        <property type="entry name" value="AMMECR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644072" description="MEMO1 family protein BROFUL_00696" evidence="3">
        <location>
            <begin position="28"/>
            <end position="534"/>
        </location>
    </feature>
    <feature type="domain" description="AMMECR1" evidence="4">
        <location>
            <begin position="352"/>
            <end position="534"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="534" mass="59545" checksum="254DF20687FDC9E9" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXR1</accession>
    <name>A0A0M2UXR1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01527</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000158">
        <property type="protein sequence ID" value="KKO19751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19751">
        <property type="protein sequence ID" value="KKO19751"/>
        <property type="gene ID" value="BROFUL_01527"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1888"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19751.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="709" mass="81507" checksum="5D09FF3D160AB7C4" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXS9</accession>
    <name>A0A0M2UXS9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyltransferase fused to TPR-repeat domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">waaE_1</name>
        <name evidence="3" type="ORF">BROFUL_01497</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000155">
        <property type="protein sequence ID" value="KKO19771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19771">
        <property type="protein sequence ID" value="KKO19771"/>
        <property type="gene ID" value="BROFUL_01497"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1852"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="18"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="501"/>
            <end position="534"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="535"/>
            <end position="568"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="587" mass="67767" checksum="163617EBB1665664" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXZ7</accession>
    <name>A0A0M2UXZ7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">STAS domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00825</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000104">
        <property type="protein sequence ID" value="KKO20440.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20440">
        <property type="protein sequence ID" value="KKO20440"/>
        <property type="gene ID" value="BROFUL_00825"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.750.24">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002645">
        <property type="entry name" value="STAS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036513">
        <property type="entry name" value="STAS_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01740">
        <property type="entry name" value="STAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52091">
        <property type="entry name" value="SSF52091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50801">
        <property type="entry name" value="STAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="STAS" evidence="1">
        <location>
            <begin position="13"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20440.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="249" mass="28159" checksum="A0BAA3523FC1C876" modified="2015-11-11" version="1">MPNTNHILPAGNPRIEIIEVIGGLIGNGALEIQSHLYKCLDEGRCYHIIDLKHAHKIDGVGIALLENILSREVQLRLINVKPEIQCILEMAKKEALFQIMSDEKDQVKAMSSFERDIMEKRAATGNTVLKKRDHVRVNTSFPSEFKFRRDGRTLFGRADILNLSQGGVLAGHIVARKKGTEEIVRYPGIIDQEIYDLQFRLNGNSTSLTLRGTCVREFTAEESIYAGIRLKDVSHDQREIIRSFVDAHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY27</accession>
    <name>A0A0M2UY27_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Putative cytochrome-related protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">BROFUL_00510</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000070">
        <property type="protein sequence ID" value="KKO20767.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20767">
        <property type="protein sequence ID" value="KKO20767"/>
        <property type="gene ID" value="BROFUL_00510"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.810.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005798">
        <property type="entry name" value="Cyt_b/b6_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036150">
        <property type="entry name" value="Cyt_b/b6_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027387">
        <property type="entry name" value="Cytb/b6-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00032">
        <property type="entry name" value="Cytochrom_B_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81648">
        <property type="entry name" value="SSF81648"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51003">
        <property type="entry name" value="CYTB_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0249">Electron transport</keyword>
    <keyword evidence="3" id="KW-0349">Heme</keyword>
    <keyword evidence="8" id="KW-0408">Iron</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="49"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="102"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="139"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="domain" description="CYTB_CTER" evidence="11">
        <location>
            <begin position="30"/>
            <end position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO20767.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="209" mass="24139" checksum="1DBC063C3700BC9A" modified="2015-11-11" version="1">MDNNTETSKDKGRYRALTFIKGTTLAKEKDADVSKDEIPTWPYLIRKEFLAAIMCTIILIVWSILLDAPLEELSDPTMTPNPAKAPWYFLGLQEMLVYFDPWIAGVAIPMLIIIGLMAIPYIDFNPKGNGYYTFRERKFAMLTFCFGFHFLWIALIIVGVFMRGPGWLWFWPWQEWDPHRIVAETNYDLTSFLGVNSKSFPGFVIGCAW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY79</accession>
    <name>A0A0M2UY79_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_00453</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the kinesin light chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000060">
        <property type="protein sequence ID" value="KKO20812.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20812">
        <property type="protein sequence ID" value="KKO20812"/>
        <property type="gene ID" value="BROFUL_00453"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.567"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005871">
        <property type="term" value="C:kinesin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005874">
        <property type="term" value="C:microtubule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002151">
        <property type="entry name" value="Kinesin_light"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00381">
        <property type="entry name" value="KINESINLIGHT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="4" id="KW-0493">Microtubule</keyword>
    <keyword evidence="7" id="KW-0505">Motor protein</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="10" id="KW-0732">Signal</keyword>
    <keyword evidence="9" id="KW-0802">TPR repeat</keyword>
    <feature type="signal peptide" evidence="10">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644087" evidence="10">
        <location>
            <begin position="33"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="9">
        <location>
            <begin position="81"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="9">
        <location>
            <begin position="123"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="9">
        <location>
            <begin position="165"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="9">
        <location>
            <begin position="207"/>
            <end position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009622"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO20812.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="284" mass="32055" checksum="BE15AEB988BFC64D" modified="2015-11-11" version="1">MVAVVNRMKHLCLCGLRVFVVFAIFGSCALPAYPQEHVWKELNDKTISLLQKKRYADGIKAGEEALKVAKKTFPPGDTRIADSMSLLGILYRTYGRHAEAEPLFNQALAMYKASFGPNHPSVASVLQELAEMYFLQDKYAKAEPLYRQALGIGEHVYGAEDPRIVNVLNKLGELYQDQKKYAEAIPFYKRAMAIEEKTLGSGHPDLASAMNNLATLYSSQGENAEAEILYKKALQLYEKEYGKDHPLVATILENMASFYERTGRKDEAKQLADRAKMIYSHYQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYD5</accession>
    <name>A0A0M2UYD5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HicB-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00170</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000018">
        <property type="protein sequence ID" value="KKO21088.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21088">
        <property type="protein sequence ID" value="KKO21088"/>
        <property type="gene ID" value="BROFUL_00170"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031807">
        <property type="entry name" value="HicB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035069">
        <property type="entry name" value="TTHA1013/TTHA0281-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15919">
        <property type="entry name" value="HicB_lk_antitox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143100">
        <property type="entry name" value="SSF143100"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HicB-like" evidence="1">
        <location>
            <begin position="5"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF15919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21088.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="67" mass="7342" checksum="69847723653348E6" modified="2015-11-11" version="1">MKIQVILEPSDEGGFTAIVPSLPGCISEGNTKEEALKNIREAIELYLEPVDDDLRFSPDAQVLEIAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYH3</accession>
    <name>A0A0M2UYH3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF362 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00613</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20630">
        <property type="protein sequence ID" value="KKO20630"/>
        <property type="gene ID" value="BROFUL_00613"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007160">
        <property type="entry name" value="DUF362"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04015">
        <property type="entry name" value="DUF362"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="9"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="domain" description="DUF362" evidence="2">
        <location>
            <begin position="89"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="330" mass="36072" checksum="170D937D2DD17C59" modified="2015-11-11" version="1">MSAKISRRAFLKTSIAVGAGIYGVSYLGGIKRTPAIKKFKEHRLKPGLIVAHGNISDATDEPVIVKEMVRRAIKALGGLDKLVAKGDRVIIKPNIAWNQRPEFAANTNPYVVAALVELCKEAGAGRVKVMDHTCSVNPETSYTTSRIAAIAREAGAEVAYIHKNRFTDFAIHDGKALKSWPFYEEMVYADEVDVLINVPIAKQHGTSRLSMGLKNVFGMIGGDRGSLHTDIHPKIADLNKFLKIDLTVLDAFRILKNHGPTGGRLDDVDNSAECARRIIVSTDPVAADAYGATLFSMQATEVGYIRQSHEQGLGEIDYRRKGFEEISVAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYK1</accession>
    <name>A0A0M2UYK1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Endonuclease III</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_00119</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the Nth/MutY family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000015">
        <property type="protein sequence ID" value="KKO21158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21158">
        <property type="protein sequence ID" value="KKO21158"/>
        <property type="gene ID" value="BROFUL_00119"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.150"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016798">
        <property type="term" value="F:hydrolase activity, acting on glycosyl bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00056">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1670.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011257">
        <property type="entry name" value="DNA_glycosylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004035">
        <property type="entry name" value="Endouclease-III_FeS-bd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003265">
        <property type="entry name" value="HhH-GPD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023170">
        <property type="entry name" value="HhH_base_excis_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000445">
        <property type="entry name" value="HhH_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00633">
        <property type="entry name" value="HHH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00730">
        <property type="entry name" value="HhH-GPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00478">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48150">
        <property type="entry name" value="SSF48150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00764">
        <property type="entry name" value="ENDONUCLEASE_III_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5" id="KW-0234">DNA repair</keyword>
    <keyword evidence="8" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-0540">Nuclease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ENDO3c" evidence="7">
        <location>
            <begin position="1"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008343"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO21158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="109" mass="12497" checksum="7A3176F65E08377F" modified="2015-11-11" version="1">MPDEIDELLKLNGVGRKTANLVVTLGYQKPGICVDTHVHRITNRWGYVQTRNPHETEFALREKLPKKYWLTINDLLVTFGQNICVPISPKCSICPVTVYCKKVEVTRSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYL2</accession>
    <name>A0A0M2UYL2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Site-specific tyrosine recombinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">xerD_2</name>
        <name evidence="3" type="ORF">BROFUL_00345</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000044">
        <property type="protein sequence ID" value="KKO20912.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20912">
        <property type="protein sequence ID" value="KKO20912"/>
        <property type="gene ID" value="BROFUL_00345"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tyr recombinase" evidence="2">
        <location>
            <begin position="1"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20912.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="160" mass="18405" checksum="40D9C18E93E99F68" modified="2015-11-11" version="1">MRQDELLSLTWDRADLFRKTIIIQETKNGKPRTIPLNQIALGILMEKTKVRSLKCDFVFPSSAMTKIDRANLIKSFNVVNEKAGIQNFRFHDLRHTFATRLAQRGIDLYKISKLLGHCDIHMTQRYAHHCPESLRKGIEVLEKVDYVLTTVGGNKNVLQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYQ7</accession>
    <name>A0A0M2UYQ7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00527</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000073">
        <property type="protein sequence ID" value="KKO20745.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20745">
        <property type="protein sequence ID" value="KKO20745"/>
        <property type="gene ID" value="BROFUL_00527"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="3"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20745.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="115" mass="13250" checksum="E02DC4442C5079F0" modified="2015-11-11" version="1">MKTILVVEDDKNQLLLYEQELSREGYNIITARDGLEAIKKVREQLPDLIVMDITMPKMNGIEAMGKILSEHKKIPIIINTAYSCYKDDFMSWSANAYVIKSSNLKELKDKIKELI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYR2</accession>
    <name>A0A0M2UYR2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00315</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000037">
        <property type="protein sequence ID" value="KKO20957.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20957">
        <property type="protein sequence ID" value="KKO20957"/>
        <property type="gene ID" value="BROFUL_00315"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20957.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="135" mass="15660" checksum="5949D9068E02E76E" modified="2015-11-11" version="1">MLRPYKRLSIETIAKINQQEVRWHTAQILPRLKLNKNERQRVIALLKMYLLDKSRIVKTFAMQALTEIAIQDNGYVEGVRNLLDKLTEEGSLAMKARGRKLLFLLKKTKPSVTLQSRQYPHGQLRGINPRATISH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZB1</accession>
    <name>A0A0M2UZB1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BROFUL_00108</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="10">Phospholipid metabolism.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the CDP-alcohol phosphatidyltransferase class-I family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000015">
        <property type="protein sequence ID" value="KKO21147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21147">
        <property type="protein sequence ID" value="KKO21147"/>
        <property type="gene ID" value="BROFUL_00108"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008444">
        <property type="term" value="F:CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1760">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000462">
        <property type="entry name" value="CDP-OH_P_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043130">
        <property type="entry name" value="CDP-OH_PTrfase_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004570">
        <property type="entry name" value="Phosphatidylglycerol_P_synth"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01066">
        <property type="entry name" value="CDP-OH_P_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000847">
        <property type="entry name" value="Phos_ph_gly_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00379">
        <property type="entry name" value="CDP_ALCOHOL_P_TRANSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword evidence="9" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 11 13" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="32"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="97"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="130"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="153"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00025707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU003750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO21147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="182" mass="20734" checksum="021392338B3999F0" modified="2015-11-11" version="1">MLNLSNKISLSRILFIPPLVLCIIQVQHNNLYRYVCLFIMMLIGLSDMLDGYFARKRNEITNLGRYLDPVADKLVLMVSCIILSSDHIWPEPRFPNWITAVIVCRDLVLMVGTIALLIITGRMDCQPIMLGKVTTGLQIIAIISVFLGNHIPLTFLIAIWWLVVILTFISGLLYMYRGVKQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZB3</accession>
    <name>A0A0M2UZB3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Phage integrase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01482</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000151">
        <property type="protein sequence ID" value="KKO19814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19814">
        <property type="protein sequence ID" value="KKO19814"/>
        <property type="gene ID" value="BROFUL_01482"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044068">
        <property type="entry name" value="CB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025269">
        <property type="entry name" value="SAM-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13102">
        <property type="entry name" value="Phage_int_SAM_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51900">
        <property type="entry name" value="CB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Core-binding (CB)" evidence="5">
        <location>
            <begin position="94"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="domain" description="Tyr recombinase" evidence="4">
        <location>
            <begin position="196"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19814.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="289" mass="33334" checksum="E936087FA4578F72" modified="2015-11-11" version="1">MAVRYRKYFPQCKLIPCSGRPGKSYCPSDRPKRSNGEFKDCGVWCIEFFDDSKQWQSLTFKDIRNKTEAEKRLTLFISDRERGKLNLPRKKAILTLAEYAGVYLGFYKAAKENTRLAKERSIRTLVSYLGDYTLNKVTPFVIEKFRIDRREKDGVKDGSINDDVVILSHLFTTAIKAGILDKNPCKDIKRLKVAQTRDKVLTNEEVSLLFEKLHGKDRFMILTGLFTGMRLNEVLRLKWTDIDFAKGLITFTQSKTNKLVVMPLSSYLAKAFRNIRPLIPVTISLKAEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZB5</accession>
    <name>A0A0M2UZB5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00943</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000116">
        <property type="protein sequence ID" value="KKO20311.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20311">
        <property type="protein sequence ID" value="KKO20311"/>
        <property type="gene ID" value="BROFUL_00943"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03255">
        <property type="entry name" value="ABC_MJ0796_LolCDE_FtsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017911">
        <property type="entry name" value="MacB_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="1"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="2"/>
            <end position="9"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20311.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="201" mass="22139" checksum="CC42B85676F33431" modified="2015-11-11" version="1">MGASGSGKSTMMHILGCLDSPTQGSYYLDGVEVSRFSKNELAEIRNKKLGFIFQSFNLLSRTTVVENIELPLIYRKSLKKGDLDRIHQIMHILGIKGFGRHYPNQLSGGQQQRVAIARAIITDPTLLLADEPTGNLDSATSKDVMSILRDLNQNMGITIVLVTHETDIALYARRVIVLKDGKILSDSRSPSSDIAASPFHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZB8</accession>
    <name>A0A0M2UZB8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00948</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000116">
        <property type="protein sequence ID" value="KKO20316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20316">
        <property type="protein sequence ID" value="KKO20316"/>
        <property type="gene ID" value="BROFUL_00948"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="198" mass="22942" checksum="E217B195A4330792" modified="2015-11-11" version="1">MRQRCIPLLTFMLVFVLSSKVDAIHYSLSEEQIKQAIAYGEKNNSLDDIPFLDEWVVVSQEGYEWAALNTKFSILAYKARQASLSVRKLTDAEIYQSLSEVDDILSFQVVLYGNSPDFSREYHAVLLYKNKPIQPVNEQNDPRARPTNLGIRLSGSYRATCRYDFPNYFVEPDEEVCLVILSPLNNERRFVFPLKEMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZC5</accession>
    <name>A0A0M2UZC5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00101</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000011">
        <property type="protein sequence ID" value="KKO21172.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21172">
        <property type="protein sequence ID" value="KKO21172"/>
        <property type="gene ID" value="BROFUL_00101"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21172.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="73" mass="8294" checksum="7D5E7B511918C072" modified="2015-11-11" version="1">MATKRTVKVGDERFLEFIAADTGMRTHYIPLDETEYKHKTAEVLIEGHMRKNPGVTYGGALLKVSAEHPEFFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZN8</accession>
    <name>A0A0M2UZN8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01351</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000139">
        <property type="protein sequence ID" value="KKO19959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19959">
        <property type="protein sequence ID" value="KKO19959"/>
        <property type="gene ID" value="BROFUL_01351"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="93" mass="11043" checksum="6973F03678F7CDE8" modified="2015-11-11" version="1">MCPEKKGINNMVMVINEKNMQNEFVCPHCKGYTFIFIGLQRQKGLFENHELWRCKSCHSTFAKETIDVKKSMENESFNKRAFQYYCKSRFTNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZP7</accession>
    <name>A0A0M2UZP7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01317</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000138">
        <property type="protein sequence ID" value="KKO19969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19969">
        <property type="protein sequence ID" value="KKO19969"/>
        <property type="gene ID" value="BROFUL_01317"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="68" mass="7682" checksum="FCEDBE8B31C37C4B" modified="2015-11-11" version="1">MITKGQIVLFKFPQTDQKEGKLRPALILRELPGKLAFGDLLNVERRGSSLYNRNFEIPVQQASREAGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZX3</accession>
    <name>A0A0M2UZX3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00773</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000098">
        <property type="protein sequence ID" value="KKO20506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20506">
        <property type="protein sequence ID" value="KKO20506"/>
        <property type="gene ID" value="BROFUL_00773"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.979"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="107"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="441" mass="50063" checksum="993D57E088E06573" modified="2015-11-11" version="1">MFKPIKLIDIELSRPLVTIEGLYGYELLQALVRLHNTPIGFIKVPVINGRCTPTDLRRAIQKQKTIDNAHHFFSDDLSASAITENLRINDLLKVPPPVYPGPQPLVTVAVCTRDRTEDLRQCLDSLNDLDYPALDILVIDNAPRNDDTEQLARTTFPGIRYVLEPRPGLDWARNRAITEARGEIIAYTDDDVVVDPGWVKALVETFNQNDSVMAVTGLVVPYELETEAQILFERHGGFGRGFVYKEYRAKKKNGKVKALHHSSVGRFGTGANMAFRSSLFHKIGYFDPALDVGTVTNGGGDLEMFFRVLKEGYTLCYEPRALVRHKHRRNYHQLREQLTNWGTGFISYFMRSALAYPDERFAFFRVWLWWLMRKIRLLLISFTGSSRFSPDLLLAEICGSFLLGRYPKARRTAAKIAQIFGSATQVVSPKEACVTKDDSRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZX8</accession>
    <name>A0A0M2UZX8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01200</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000128">
        <property type="protein sequence ID" value="KKO20074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20074">
        <property type="protein sequence ID" value="KKO20074"/>
        <property type="gene ID" value="BROFUL_01200"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1487"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="6"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="75"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="109"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="143"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="177"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="211"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="245"/>
            <end position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="313" mass="34944" checksum="3B329F56560C8C5F" modified="2015-11-11" version="1">MSNTKWHTCFLFSVTAFLFCTNMGCGKKEADTQSAGQHTAGIQFTGDAPSVHKKTMADEEIEKNKKLLELNPNDAVIHYNLGLLYDEKGMLDESLASYKKASELNSSMVEALVGQGNILNKKGKSDEAIDLFKKAIESNPHCPEAYEGLGLVYVHKKQEEDAIKSFKRALDINPGLVNSRYHLGILYAKKAQFNDAVAEWTKAIEINPQKTEVHYNLGIAYTKLGKLDDAVSVWQKALAVRPDMADFHYVIGLVYKEKGDFEKAEASLKKALEVNPNMAEVHKVLEELYRSKGMLGDADREAELYKSQSSPHH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V002</accession>
    <name>A0A0M2V002_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00094</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase U62 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000010">
        <property type="protein sequence ID" value="KKO21175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21175">
        <property type="protein sequence ID" value="KKO21175"/>
        <property type="gene ID" value="BROFUL_00094"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045569">
        <property type="entry name" value="Metalloprtase-TldD/E_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002510">
        <property type="entry name" value="Metalloprtase-TldD/E_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035068">
        <property type="entry name" value="TldD/PmbA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036059">
        <property type="entry name" value="TldD/PmbA_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01523">
        <property type="entry name" value="PmbA_TldD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19289">
        <property type="entry name" value="PmbA_TldD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111283">
        <property type="entry name" value="SSF111283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PmbA_TldD" evidence="2">
        <location>
            <begin position="19"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="domain" description="PmbA_TldD_C" evidence="3">
        <location>
            <begin position="215"/>
            <end position="434"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005836"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01523"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF19289"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO21175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="437" mass="47138" checksum="54E46B797BCB5D0E" modified="2015-11-11" version="1">MNRIEEKVLELALKQTPSAEVLYDEGESRSVSFENNKLKYVSTKSIRGIGLRVIKDGKIGFSSTTDFRKPEKLVANAIESAKFGQTAAFEFPSKGHFPKVAVFDQQVIDYPIHQCVDIGKDAIERALSVNANYECSVSMGKGHGARRLINSKGLDVSIASTSFGVGIEILEVKGQSLLWVGEGESSKGLVTNLNKHLEKALRDLKLAGKELKLKTGVYPVVVTAKAMGNLLATFESDCNGKLVQKGASPLTNRLGEKILDERVSIYDDATIDMAGSSYPWDAEGMPSQCTPLFEKGVLKNYIFDLQTAGIMKATSTGNGNRSFASQPSPGNSNITVEPGNMSFEAMVKDVKYGVLVDQVLGGGQSNILAGEFSVNIDLGYLIENGEIVGRVKDCMIAGNAFEVFNNIVAIGDTAEWHGSTKVPPFYLKAMNIAGNAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0H5</accession>
    <name>A0A0M2V0H5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative glucosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00588</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000082">
        <property type="protein sequence ID" value="KKO20681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20681">
        <property type="protein sequence ID" value="KKO20681"/>
        <property type="gene ID" value="BROFUL_00588"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.742"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028098">
        <property type="entry name" value="Glyco_trans_4-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13579">
        <property type="entry name" value="Glyco_trans_4_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_4-like_N" evidence="2">
        <location>
            <begin position="18"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="domain" description="Glycos_transf_1" evidence="1">
        <location>
            <begin position="235"/>
            <end position="379"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13579"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="410" mass="45834" checksum="FA7E35697EAF48B0" modified="2015-11-11" version="1">MKHLIICPEYPPAPIPLGGIGTYVTHISKLLAESGETVHVIGQLWKGAERRIEEKCHGRLIIHRVRLDGGKSFSGRKLSSARKAGAEEGLLASSFPPQYFSWQASLLAESLIEQEGIDLIEAQDYEAPLYYLQLRRALGLGPKRRPPCIIHLHSPTEIIIRYNDWDIGRPYLMTAKRLEDYSIASADALLCPSRYLARQATTHYGLNEGCIQVIPLPIGNIPMLERDKDIWEHGTICYVGRLERRKGVIEWIDAAVDAAPAYPSARFEFIGANILGTDTLRGEKVVERRIPDELKSRFHFRGQQNHSTLLQFLAGARIAVVPSRWENFPNTCVEAMSSGLPVIASREGGMVEMIEDGRTGWLADKAGSVGLRDALRRALGTPSGHLARWDAKLRCPFVRCAITRRSWKVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0J7</accession>
    <name>A0A0M2V0J7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Peptidoglycan deacetylase</fullName>
            <ecNumber evidence="2">3.5.1.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">pgdA</name>
        <name evidence="2" type="ORF">BROFUL_00547</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.-" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000077">
        <property type="protein sequence ID" value="KKO20711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20711">
        <property type="protein sequence ID" value="KKO20711"/>
        <property type="gene ID" value="BROFUL_00547"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016810">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011330">
        <property type="entry name" value="Glyco_hydro/deAcase_b/a-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002509">
        <property type="entry name" value="NODB_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01522">
        <property type="entry name" value="Polysacc_deac_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88713">
        <property type="entry name" value="SSF88713"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51677">
        <property type="entry name" value="NODB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NodB homology" evidence="1">
        <location>
            <begin position="36"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="223" mass="25040" checksum="B05BC9A3D5C1E997" modified="2015-11-11" version="1" fragment="single">MKMTKIDETLYVAISLDIDPDANSAVEGRYDALSCPTENGTVTIGACKRGLQKILELFDIYDIDATLFYEARTAQILVADGMNLPKLSERHEVSCHSLEHEDFLGTVSGMPMEEETLEEAITKARNILERIFGRDIKGFRAPYTRINQTVVKVIERQGFQYDSSETITLGAEWTGSPFPLETFDSNLWELALPACYDTKGKKLSSYLWAIFEGRRGSGDYLDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0M3</accession>
    <name>A0A0M2V0M3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01004</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000119">
        <property type="protein sequence ID" value="KKO20259.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20259">
        <property type="protein sequence ID" value="KKO20259"/>
        <property type="gene ID" value="BROFUL_01004"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20259.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="94" mass="10801" checksum="1D0BD67526077DE3" modified="2015-11-11" version="1">MITYNIVHHIDGRIRLKVPFIKKLRRIRNLPDHIKNLSFISMPSGIKDIRANPFTGSLVIVYEPKEVDVIEFIKTTLDSLSSSAEIQNIIREVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V184</accession>
    <name>A0A0M2V184_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Type I site-specific deoxyribonuclease</fullName>
            <ecNumber evidence="3">3.1.21.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BROFUL_00794</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Endonucleolytic cleavage of DNA to give random double-stranded fragments with terminal 5'-phosphates, ATP is simultaneously hydrolyzed.</text>
            <dbReference type="EC" id="3.1.21.3"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the HsdR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.21.3" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000101">
        <property type="protein sequence ID" value="KKO20479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20479">
        <property type="protein sequence ID" value="KKO20479"/>
        <property type="gene ID" value="BROFUL_00794"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1007"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009035">
        <property type="term" value="F:type I site-specific deoxyribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013670">
        <property type="entry name" value="EcoEI_R_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006935">
        <property type="entry name" value="Helicase/UvrB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007409">
        <property type="entry name" value="Restrct_endonuc_type1_HsdR_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08463">
        <property type="entry name" value="EcoEI_R_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04313">
        <property type="entry name" value="HSDR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04851">
        <property type="entry name" value="ResIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0680">Restriction system</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="11">
        <location>
            <begin position="176"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="12">
        <location>
            <begin position="441"/>
            <end position="625"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012654"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO20479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="895" mass="102775" checksum="1A115E1673590644" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1Y8</accession>
    <name>A0A0M2V1Y8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00564</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000078">
        <property type="protein sequence ID" value="KKO20709.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20709">
        <property type="protein sequence ID" value="KKO20709"/>
        <property type="gene ID" value="BROFUL_00564"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.708"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2310.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007711">
        <property type="entry name" value="HigB-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035093">
        <property type="entry name" value="RelE/ParE_toxin_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40266">
        <property type="entry name" value="PTHR40266"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05015">
        <property type="entry name" value="HigB-like_toxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143011">
        <property type="entry name" value="SSF143011"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20709.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="74" mass="8956" checksum="48351A17483023EF" modified="2015-11-11" version="1">MRFPGHIQRIALRKLFMLHRAKELQDLRIPPANRLEKLKGGRIGQYSIRINDQWRICFLWHDANAYDIEIVDYH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V209</accession>
    <name>A0A0M2V209_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Diguanylate cyclase/phosphodiesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00541</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000076">
        <property type="protein sequence ID" value="KKO20729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20729">
        <property type="protein sequence ID" value="KKO20729"/>
        <property type="gene ID" value="BROFUL_00541"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GGDEF" evidence="1">
        <location>
            <begin position="78"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="219" mass="24744" checksum="4AE9E9A4A5B4F79B" modified="2015-11-11" version="1">MSVSSILSIVVAVDPWHEEDIALLHITADIIGNTIAHKQSEALVTYMAYYDILTALPSRNLFQDRLKVALVHAKRYKKLVAVMILDLDHFKSINDTLGHYMGDLLLKRFAERLTQCVRRGDTVARTGGDEFTILLPDLVHALNTVIVASKIIDALNQPFRLEGHEIHTTTSIGISLYPFDAESPEELIKKADIAMYLSKARGKNTYRFYKSDMNNKRNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V212</accession>
    <name>A0A0M2V212_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00104</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000013">
        <property type="protein sequence ID" value="KKO21166.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21166">
        <property type="protein sequence ID" value="KKO21166"/>
        <property type="gene ID" value="BROFUL_00104"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21166.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="55" mass="6310" checksum="184D5850D3D88535" modified="2015-11-11" version="1">MFTAIEKRLNGRTTSKVERVMRTVNLRVNVSKWSVAGALNVTKIRLAYYYNGFDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V240</accession>
    <name>A0A0M2V240_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 3">Nucleoside diphosphate kinase</fullName>
            <shortName evidence="1">NDK</shortName>
            <shortName evidence="1">NDP kinase</shortName>
            <ecNumber evidence="1 3">2.7.4.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Nucleoside-2-P kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">ndk</name>
        <name evidence="5" type="ORF">BROFUL_00501</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 3">
            <text>a 2'-deoxyribonucleoside 5'-diphosphate + ATP = a 2'-deoxyribonucleoside 5'-triphosphate + ADP</text>
            <dbReference type="Rhea" id="RHEA:44640"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:73316"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.6"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a ribonucleoside 5'-diphosphate + ATP = a ribonucleoside 5'-triphosphate + ADP</text>
            <dbReference type="Rhea" id="RHEA:18113"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57930"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the NDK family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.6" evidence="1 3"/>
    <dbReference type="EMBL" id="LAQJ01000069">
        <property type="protein sequence ID" value="KKO20774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20774">
        <property type="protein sequence ID" value="KKO20774"/>
        <property type="gene ID" value="BROFUL_00501"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.629"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004550">
        <property type="term" value="F:nucleoside diphosphate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006241">
        <property type="term" value="P:CTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006183">
        <property type="term" value="P:GTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006165">
        <property type="term" value="P:nucleoside diphosphate phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006228">
        <property type="term" value="P:UTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.141">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00451">
        <property type="entry name" value="NDP_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034907">
        <property type="entry name" value="NDK-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036850">
        <property type="entry name" value="NDK-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001564">
        <property type="entry name" value="Nucleoside_diP_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023005">
        <property type="entry name" value="Nucleoside_diP_kinase_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00334">
        <property type="entry name" value="NDK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01243">
        <property type="entry name" value="NUCDPKINASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00562">
        <property type="entry name" value="NDK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54919">
        <property type="entry name" value="SSF54919"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00469">
        <property type="entry name" value="NDP_KINASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 3 5" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0546">Nucleotide metabolism</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NDK" evidence="4">
        <location>
            <begin position="1"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="active site" description="Pros-phosphohistidine intermediate" evidence="1">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="9"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="57"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="85"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="91"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="102"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="112"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00451"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU004011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU004013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="156" mass="17753" checksum="883AB25C31F856F1" modified="2015-11-11" version="1">MEKTLIILKPDALQRRLMGKIICRFEEKGFQIIGLKMLRITETMARKHYAEHEGKDFFEPLVRYTTSAPVIVMALQGKNIVEIARKMMGATFGFRAEPGTIRGDYAVSNRFNLIHGSDSPAAAEREIGTFFHTGELFEYKPADFSWIYDLSTGDII</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V3B2</accession>
    <name>A0A0M2V3B2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00115</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000015">
        <property type="protein sequence ID" value="KKO21154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21154">
        <property type="protein sequence ID" value="KKO21154"/>
        <property type="gene ID" value="BROFUL_00115"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006385">
        <property type="entry name" value="HAD_hydro_SerB1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01490">
        <property type="entry name" value="HAD-SF-IB-hyp1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="216" mass="24772" checksum="BB11AB5B57ACEA9E" modified="2015-11-11" version="1">MNKAAIFDIDGTIIRNISSERVFFRYLLEKGLITFRDIFRFVKVFFNNLLLFKGLYVRKNKYYLKNKDYEKIVVSVGECFKERISPYISLAAVEEIKMLKNAGYLIVLLSGTLSPFVECFKKYCNADVGIGTNLAVDDKGIITGEINGIHSYSGGKATIVNRLVTEYNIDLSSSYAYANQYVDVKFMRMVGYPVAVNASPFLRLYAKINRWKIMEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V3M4</accession>
    <name>A0A0M2V3M4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00002</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000001">
        <property type="protein sequence ID" value="KKO21264.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21264">
        <property type="protein sequence ID" value="KKO21264"/>
        <property type="gene ID" value="BROFUL_00002"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="60"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="323"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="425"/>
            <end position="458"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="459"/>
            <end position="492"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21264.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="493" mass="55821" checksum="A5DD5C5A12C39035" modified="2015-11-11" version="1">MLCKGYFSLSATEIPKGINHPLGIWEKPRYERARLAAERGFIDQAIPDLQKITERYPDYVEAHAYLGWAYSQKGLISRAVEEFQAVIRIHPDLQNTPFDYPMTKDTPDAVREFVAEFEDFIDLIGDFPGAHEVMGFSSVQLGRLGDALTAYTRALNLKRVDGKETLSGVDQAIREYEDILQVKPDCVEAYIKLACVRWEKGMPDRSIADMRKAISLEPERLETHVYLACFYARQRMLNEALQALGAAKKIRDNLLENLITQGEQSMSSCRYDTAITIARDAIKLSPGDKKAYWLLASAYSKKGEPEKAVEICKEVLCKYPDDIPMYAVLGWVYVQCDLFEEAKAIVERAMSIEPENADIQALTAFLYASQDQIPEAITTGNMALDTLSRKNETVNNYGWIRGKVPSIEQKFREVMDVIEIKPDYPEAYLCLGWLHAKNGEHEEATVALKKAVELMPSSYTAHRCLGNAYLQSGKIKEALDEYEKALFCRNEQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPH6</accession>
    <name>A0A0M2UPH6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">YfiO domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03301</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000301">
        <property type="protein sequence ID" value="KKO18023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18023">
        <property type="protein sequence ID" value="KKO18023"/>
        <property type="gene ID" value="BROFUL_03301"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017689">
        <property type="entry name" value="BamD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039565">
        <property type="entry name" value="BamD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013105">
        <property type="entry name" value="TPR_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07719">
        <property type="entry name" value="TPR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13525">
        <property type="entry name" value="YfiO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03302">
        <property type="entry name" value="OM_YfiO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="81"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="domain" description="YfiO" evidence="2">
        <location>
            <begin position="125"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="157"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="306" mass="35833" checksum="089DA3A885AF545F" modified="2015-11-11" version="1">MKFQSIILLVGSLLSLAITPAYGKWIWNKETGWMESPTTEISTLEQRYRYALSLLVEQKYTVAIKEFELIIRDAGDSEYAEVSQINIGRAYYLNNDFKRALKAYEKVLEKYPGTKRTVEILKREYQVGVTQMETDEQAAISVFERIIEKHPLGPIAPDAQVKIADCYFKLELYEEALDAYEKFLENYPKSEWVPYVQYQIPLSKVYHEKQQERNYGLLISAREGFEEFLVSHPHDIHAEDAKKMIQEIRIIEAEREYNIGEFYLRQKKPASAAMYFGYVTADFPDTVWAERANEKIEFLRIIEAIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQA1</accession>
    <name>A0A0M2UQA1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">STAS domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02995</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18268.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18268">
        <property type="protein sequence ID" value="KKO18268"/>
        <property type="gene ID" value="BROFUL_02995"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.750.24">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002645">
        <property type="entry name" value="STAS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036513">
        <property type="entry name" value="STAS_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01740">
        <property type="entry name" value="STAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52091">
        <property type="entry name" value="SSF52091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50801">
        <property type="entry name" value="STAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="STAS" evidence="1">
        <location>
            <begin position="1"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18268.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="128" mass="14514" checksum="7304ED4C42EF1841" modified="2015-11-11" version="1">MKIEKQENEKIITLLPKGNLVYEGIEELEALLKVLRDEVRCIIIDLTYTKYLSAKALSIIADSVKDYRAKRMNLKLVNVNEHIIGLFDITGVNKVISIFENEDAVLASIGPQVGKLEKNLLWSKECII</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQZ4</accession>
    <name>A0A0M2UQZ4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Flagellar protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_03014</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Bacterial flagellum basal body</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the FliO/MopB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18287">
        <property type="protein sequence ID" value="KKO18287"/>
        <property type="gene ID" value="BROFUL_03014"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009425">
        <property type="term" value="C:bacterial-type flagellum basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044781">
        <property type="term" value="P:bacterial-type flagellum organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022781">
        <property type="entry name" value="Flagellar_biosynth_FliO"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04347">
        <property type="entry name" value="FliO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03500">
        <property type="entry name" value="FliO_TIGR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="1 5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0966">Cell projection</keyword>
    <keyword evidence="6" id="KW-0969">Cilium</keyword>
    <keyword evidence="6" id="KW-0282">Flagellum</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="57"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362064"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="160" mass="17903" checksum="7ED561B425E3501A" modified="2015-11-11" version="1">MIKKWLFVMFLILLVTCDKGYCVPERMENGGIHGTAVTETESANIAEPVNFLKITPWIKTLGLVIVVIIVGIFFLYKKLGMKTGMIGRKRYIHVVDSLSLGSKKSVHLVKVPGKVLFIGVTNERIQFLSEITEKDIVDSLVSESRGSEFMSFFKRVCTGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR76</accession>
    <name>A0A0M2UR76_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pyruvate:ferredoxin-oxoacid:ferredoxin oxidoreductase alpha subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03179</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18130">
        <property type="protein sequence ID" value="KKO18130"/>
        <property type="gene ID" value="BROFUL_03179"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3921"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07034">
        <property type="entry name" value="TPP_PYR_PFOR_IOR-alpha_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033412">
        <property type="entry name" value="PFOR_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002880">
        <property type="entry name" value="Pyrv_Fd/Flavodoxin_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17147">
        <property type="entry name" value="PFOR_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01855">
        <property type="entry name" value="POR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52922">
        <property type="entry name" value="SSF52922"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="POR_N" evidence="1">
        <location>
            <begin position="13"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="domain" description="PFOR_II" evidence="2">
        <location>
            <begin position="245"/>
            <end position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17147"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="362" mass="39614" checksum="FD786DD77F464480" modified="2015-11-11" version="1">MKQLMTGNEAAAEAAIVAGCRYYYGYPITPQNELINYMSARMPQVGGAFIQAESEIAAINMVYGSAAAGGRAMTSSSSPGISLKQEGISYLAGSELPCVIVNIQRGGPGLGDISASQADYFQAVKGGGHGDYHVIVLAPSSVQEMADLVYDAFDLADKYRNPVMILGDAQIGQLMEPVEFHKKPRENLPPKTWALAGAEGRKRNIVKSFYPVKGQLEEFNAHLQRKYKTIDENEVRYEMINTHKADVVLVAYGTSARVCTEVVKKSRQLEFKVGLIRPITLWPFPKEVIRRVAEKVQCILTVEMSSGQMVEDVRLAVEGRCPVHFYGRTGGGVPTSSQVIKKIVEIVPDNLANTLLQLAEVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR97</accession>
    <name>A0A0M2UR97_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02903</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18397.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18397">
        <property type="protein sequence ID" value="KKO18397"/>
        <property type="gene ID" value="BROFUL_02903"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18397.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="92" mass="11285" checksum="3DB2937DFC9A563D" modified="2015-11-11" version="1">MKTVGIDKSEIINFLRLDLISEIQATKKSLELFEKKYNKSFKEFEKEVLEGEEEFVKWDDYLEWRAYRDTYKDRMKDLKNLKDEKNIKVIIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URD0</accession>
    <name>A0A0M2URD0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02675</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000246">
        <property type="protein sequence ID" value="KKO18618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18618">
        <property type="protein sequence ID" value="KKO18618"/>
        <property type="gene ID" value="BROFUL_02675"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3315"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="64"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="83" mass="9240" checksum="DDE777D4AE0AFDE2" modified="2015-11-11" version="1">MRIRLIMTLVFITLFVSKVVFGQESDSYIISIPQKIGNFIGGVSPFIIIGLGILLIFIQRLAKFIGIALLIIGAVRMIFLFIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URJ9</accession>
    <name>A0A0M2URJ9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">4Fe-4S ferredoxin iron-sulfur binding domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02816</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000265">
        <property type="protein sequence ID" value="KKO18492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18492">
        <property type="protein sequence ID" value="KKO18492"/>
        <property type="gene ID" value="BROFUL_02816"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3483"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="153" mass="16852" checksum="A9C83DF9BF9BC417" modified="2015-11-11" version="1">MSGCPGSRTMDFSDKTAQEGSETGKRPSQLRQWPIQMHLVSPLAPYFQGKDILLAADCTAFAFGEFHKDYLKGKSIAIACPKLDSDQEVYTEKIKALIDDAKINTLTVMIMQVPCCFGLAQIAKEGAEKATRKIPIKQVVVGLEGNILSEEWI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URY7</accession>
    <name>A0A0M2URY7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02916</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18410.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18410">
        <property type="protein sequence ID" value="KKO18410"/>
        <property type="gene ID" value="BROFUL_02916"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18410.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="132" mass="14874" checksum="4688E7210D44E534" modified="2015-11-11" version="1">MAPLSILPGRIRFESQYLIGKPHICGYLKESIVNYFGGVTEVTANHKTGRILVRFDERQIDRQALTQYINQVMKEGAERAANNWQFLTEEKNSKPPVARHAWHALADVITHAILPMPLNALIPMAIKVATGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US13</accession>
    <name>A0A0M2US13_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02664</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000245">
        <property type="protein sequence ID" value="KKO18627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18627">
        <property type="protein sequence ID" value="KKO18627"/>
        <property type="gene ID" value="BROFUL_02664"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="89" mass="10102" checksum="FDABB0DAA8E4531E" modified="2015-11-11" version="1">MPPCGVNRNCMIICYNHSAAQPQPNFLYESGEIASEKALAMTATMHFDGTRHVVIASEAKQSFTHKKRYLLKGVCEKTYKKRSFYTVIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US16</accession>
    <name>A0A0M2US16_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">CRISPR-associated protein (Cas Cmr3)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02414</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000231">
        <property type="protein sequence ID" value="KKO18868.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18868">
        <property type="protein sequence ID" value="KKO18868"/>
        <property type="gene ID" value="BROFUL_02414"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019117">
        <property type="entry name" value="CRISPR-assoc_protein_Cmr3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09700">
        <property type="entry name" value="Cas_Cmr3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18868.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="224" mass="25821" checksum="0977A1E40357C07D" modified="2015-11-11" version="1">MPDYFVRPYDVLFFRGNKSFHFGEWYTEGVFPPYPSTFQGFVRNKLLADHHLIDPHGSLTDAERAREKIGNDETLGVDITGPYLMDADTGEIYFKTPSDLFRKNDGDRWCYSAFPIKMASLESDCGFDLCCPTIPDGKLDDRYPPEFISLSEICRYRLSLNEMEVAEKGLWMPEDRVGITLDTAKLREHNRTVEETKFYTTPYNRLRDRMGFYCATDKPLAAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US17</accession>
    <name>A0A0M2US17_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Hydroxylamine oxidoreductase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">hao_8</name>
        <name evidence="3" type="ORF">BROFUL_02874</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000270">
        <property type="protein sequence ID" value="KKO18440.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18440">
        <property type="protein sequence ID" value="KKO18440"/>
        <property type="gene ID" value="BROFUL_02874"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036280">
        <property type="entry name" value="Multihaem_cyt_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48695">
        <property type="entry name" value="SSF48695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644133" evidence="2">
        <location>
            <begin position="22"/>
            <end position="581"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="551"/>
            <end position="572"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18440.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="581" mass="66030" checksum="9EB3F506C050F1A6" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USG6</accession>
    <name>A0A0M2USG6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03382</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17931.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17931">
        <property type="protein sequence ID" value="KKO17931"/>
        <property type="gene ID" value="BROFUL_03382"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17931.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="36" mass="4253" checksum="7C1AF750CE5DA27D" modified="2015-11-11" version="1">MSPFPNMSYVRIKLNVASFFDTILMLYGTTYSRKFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USK6</accession>
    <name>A0A0M2USK6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Ion-translocating oxidoreductase complex subunit D</fullName>
            <ecNumber evidence="10">7.-.-.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Rnf electron transport complex subunit D</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">rnfD</name>
        <name evidence="11" type="ORF">BROFUL_03348</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="10">The complex is composed of six subunits: RnfA, RnfB, RnfC, RnfD, RnfE and RnfG.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell membrane</location>
            <topology evidence="10">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the NqrB/RnfD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.-.-.-" evidence="10"/>
    <dbReference type="EMBL" id="LAQJ01000306">
        <property type="protein sequence ID" value="KKO17976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17976">
        <property type="protein sequence ID" value="KKO17976"/>
        <property type="gene ID" value="BROFUL_03348"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4121"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022900">
        <property type="term" value="P:electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00462">
        <property type="entry name" value="RsxD_RnfD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004338">
        <property type="entry name" value="NqrB/RnfD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011303">
        <property type="entry name" value="RnfD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30578">
        <property type="entry name" value="PTHR30578"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30578:SF0">
        <property type="entry name" value="PTHR30578:SF0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03116">
        <property type="entry name" value="NQR2_RnfD_RnfE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01946">
        <property type="entry name" value="rnfD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 10" id="KW-0249">Electron transport</keyword>
    <keyword evidence="3 10" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4 10" id="KW-0288">FMN</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 10" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 10" id="KW-1278">Translocase</keyword>
    <keyword evidence="5 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1 10" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="28"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="54"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="84"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="202"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="230"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="259"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="288"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="modified residue" description="FMN phosphoryl threonine" evidence="10">
        <location>
            <position position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO17976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="343" mass="37185" checksum="232F892395DB28C2" modified="2015-11-11" version="1">MSDQTEIRHNLIVSASPHIYDGENIPRIMWAVVLSLVPAGIAGAFAFGYYCLSVIFLCCLASVVTEAGILILRKQPIVPTIKDGSAVVTGVLLAYTLPPSVPWYVPVVGSFFAIAVVKHCFGGLGNNIWNPALAARAFLQVAYPAVMNSDWRILEHGIGNLVHSITKMDPAGKLVDAITRATPLTKEAGAETYTLAKLIMGNVPGCIGETSVIALLLGGAFLIYKRYIKWYVPVYYIVTMFVMALILPPRAVTPWANNPWYHIFSGGLFLGAFFMATDMVTSPLAKRGLIIFAIGAGVLTALIRFYSGYPEGVCYSILLMNTATPLIDRYTKPRLYGTGVKKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USW2</accession>
    <name>A0A0M2USW2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Phospho-N-acetylmuramoyl-pentapeptide-transferase</fullName>
            <ecNumber evidence="7">2.7.8.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">UDP-MurNAc-pentapeptide phosphotransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7 8" type="primary">mraY</name>
        <name evidence="8" type="ORF">BROFUL_02330</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the initial step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan: transfers peptidoglycan precursor phospho-MurNAc-pentapeptide from UDP-MurNAc-pentapeptide onto the lipid carrier undecaprenyl phosphate, yielding undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide, known as lipid I.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>di-trans,octa-cis-undecaprenyl phosphate + UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine = di-trans-octa-cis-undecaprenyl diphospho-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine + UMP</text>
            <dbReference type="Rhea" id="RHEA:28386"/>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
            <dbReference type="ChEBI" id="CHEBI:60392"/>
            <dbReference type="ChEBI" id="CHEBI:61386"/>
            <dbReference type="ChEBI" id="CHEBI:61387"/>
            <dbReference type="EC" id="2.7.8.13"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="7">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the glycosyltransferase 4 family. MraY subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.8.13" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18937">
        <property type="protein sequence ID" value="KKO18937"/>
        <property type="gene ID" value="BROFUL_02330"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2895"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008963">
        <property type="term" value="F:phospho-N-acetylmuramoyl-pentapeptide-transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051992">
        <property type="term" value="F:UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06852">
        <property type="entry name" value="GT_MraY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00038">
        <property type="entry name" value="MraY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000715">
        <property type="entry name" value="Glycosyl_transferase_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003524">
        <property type="entry name" value="PNAcMuramoyl-5peptid_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018480">
        <property type="entry name" value="PNAcMuramoyl-5peptid_Trfase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22926">
        <property type="entry name" value="PTHR22926"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00953">
        <property type="entry name" value="Glycos_transf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00445">
        <property type="entry name" value="mraY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01347">
        <property type="entry name" value="MRAY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01348">
        <property type="entry name" value="MRAY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="7" id="KW-0132">Cell division</keyword>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0133">Cell shape</keyword>
    <keyword evidence="7" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7 8" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="18"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="72"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="97"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="134"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="174"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="201"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="240"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="264"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="290"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="339"/>
            <end position="357"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005583"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="358" mass="39694" checksum="4E3C33EC0F40B952" modified="2015-11-11" version="1">MLYHLFSSVSSLEIFKYISSRSCLAAFTAFCISIFFGQWFIKRLRALKVGEDTSKTDSEELKRMHSDKKNTPTMGGIIVIAAIVVSTLLWCNLYNEYILLLLFTLIWFGVLGFIDDYIKLTQSKAAGLTDISKLLFQSALGLILGLILYFHMKKFTWGTHLVIPLMKDFQPDLGPFYVIVVAFFIVGMSNAVNLTDGLDGLAIGCGIIAGIAFAIIAYLSGRVDFSDYLRIPYIPGSGELSVFCAALVGGGLGFLWYNCFPAQVFMGDTGSLTLGGVLGLVAIIVKQEVLMIIIGGIFIAEAVSVLMQVSFYKMTKKRIFRCAPLHHHFQFKGWHESKVTIRFWVITALLAVGSFMLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USX0</accession>
    <name>A0A0M2USX0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Cobalt ABC transporter permease component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_02584</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000239">
        <property type="protein sequence ID" value="KKO18705.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18705">
        <property type="protein sequence ID" value="KKO18705"/>
        <property type="gene ID" value="BROFUL_02584"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003339">
        <property type="entry name" value="ABC/ECF_trnsptr_transmembrane"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02361">
        <property type="entry name" value="CbiQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="35"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="63"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="100"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="141"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18705.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="189" mass="22043" checksum="437D1CC75EB3AD29" modified="2015-11-11" version="1">MAGMLEKLDPRSKIISFLAMFCCIILTPITRFRDFGLYFLILLAIVFLARITPGQILKRISLLIPWVVVIAMIVPFIKTGFVCLSMHIGYWKVEITDKGVWTFLSIAVKSSLSSLLLIIISLTTTLSDFLKGLELLHFPRLLIRLLYFVYCCLFLFLYKTRHLLQDKYLRFFGARCRQRFALSDLWPEY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USX7</accession>
    <name>A0A0M2USX7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Mevalonate or galacto kinase</fullName>
            <ecNumber evidence="6">2.7.1.36</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">mvk</name>
        <name evidence="6" type="ORF">BROFUL_02136</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.36" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19153.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19153">
        <property type="protein sequence ID" value="KKO19153"/>
        <property type="gene ID" value="BROFUL_02136"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2663"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004496">
        <property type="term" value="F:mevalonate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001174">
        <property type="entry name" value="Galkinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013750">
        <property type="entry name" value="GHMP_kinase_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036554">
        <property type="entry name" value="GHMP_kinase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006204">
        <property type="entry name" value="GHMP_kinase_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014606">
        <property type="entry name" value="Heptose_7-P_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08544">
        <property type="entry name" value="GHMP_kinases_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00288">
        <property type="entry name" value="GHMP_kinases_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036406">
        <property type="entry name" value="Hept_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00960">
        <property type="entry name" value="LMBPPROTEIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55060">
        <property type="entry name" value="SSF55060"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 6" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GHMP_kinases_N" evidence="4">
        <location>
            <begin position="90"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="domain" description="GHMP_kinases_C" evidence="5">
        <location>
            <begin position="233"/>
            <end position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF08544"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19153.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="360" mass="40597" checksum="33F3CA381A67A164" modified="2015-11-11" version="1">MIISRTPYRISFFGGGTDYPVWYEKHGGAVLATTIDKYCYLTCRYFPPFFEHKFRIVWSKIENCADAQKINHPAVREILNFLKLERGIEIHHVGDLPARSGMGSSSSFTVGLLHALYALKGYMPTKHQLATESIFIEQELLKETVGSQDQVLAAHGGFNQILFLKNGEISVHPIVLPSERFDELNSHLMLFYTGMKRTASDVASSYVHGIEERKRQLRVMKDIVEESISILNSSHDITAFGELMHESWLVKRSLSSNVSNPHIDGIYETAIAAGAIGGKLTGAGGGGFLLLFTPPDKRKDVKEVLHNLIYVPFKFDFSGSQIIYHNFEEDYSGIEKERDNQSIILSRKLESYNCQTLQKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USZ9</accession>
    <name>A0A0M2USZ9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02105</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000211">
        <property type="protein sequence ID" value="KKO19178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19178">
        <property type="protein sequence ID" value="KKO19178"/>
        <property type="gene ID" value="BROFUL_02105"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006158">
        <property type="entry name" value="Cobalamin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020612">
        <property type="entry name" value="Methylthiotransferase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034466">
        <property type="entry name" value="Methyltransferase_Class_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02310">
        <property type="entry name" value="B12-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01123">
        <property type="entry name" value="methyltransferase_(Class_B)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01278">
        <property type="entry name" value="MTTASE_RADICAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="B12-binding" evidence="3">
        <location>
            <begin position="1"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="4">
        <location>
            <begin position="180"/>
            <end position="397"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="437" mass="50130" checksum="B261D9B7FC82B693" modified="2015-11-11" version="1">MPDTVPQFSAKTWRAPNLAISSLAGNIQPHHEVALADLVLRRNNLLPSVKKIIEDYRPDMVGLSAMTFQFDTARRLAVFIKTLRKDIKIALGGYHATLMYEEIASSGDGDPFDYIVRGEGEETFRDILDAAEGNREWKDIPGLSYRRQGGFLHNTPRSLENLDTLRLPRRDVRIWSGYYFSGKKLDMVETSRGCTMTCNFCSMNRMYGRTFRTYSFERIMQDLTNAKKHGARYITFSDDNITLNVKRFESLCDAIVEAGHNDLRYIVQASTAGIASSPVLAQKMARAGIQIVFLGIENVSERNLKLMNKGNMLEKTKRAIEYLHNNNLLIVGGMILGHAEDKEEDIAQNYEFFDKANIDFFGEQIITPYPKTGMRDILMNEGLVTNAIDYRKYNGFWANVKTKHLSSEDLQFLRWKYKRKYSTFFKTTPVFKANFAW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT21</accession>
    <name>A0A0M2UT21_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02545</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18765.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18765">
        <property type="protein sequence ID" value="KKO18765"/>
        <property type="gene ID" value="BROFUL_02545"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18765.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="268" mass="30691" checksum="8C7A82E1CF6DD83E" modified="2015-11-11" version="1">MSAHGRIQENHDSIPFARSECSDGMCCFTCVIPPGNKHIGFFKSLWKRGTGYPYVKLLVTSEGYKDEWYDSCKFLNFTIAPDAARCHLIMDLRCSIYKSRPTQCVGYPDRAGESLYQSISGPCIFNEYTAPPAYRKLVYKREWKAFYAISDQADAIRGICAHEDPSAARSLILEAKGVVRTTLLVGNREREYILIPIQKQTENILYISEKHQPIATIRQAYSRWEEKIHNNLINHYGEEWESRLQGAIEMEEKDACKRGDEDTTGNPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT24</accession>
    <name>A0A0M2UT24_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02296</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO19002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19002">
        <property type="protein sequence ID" value="KKO19002"/>
        <property type="gene ID" value="BROFUL_02296"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032248">
        <property type="entry name" value="DUF4823"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16105">
        <property type="entry name" value="DUF4823"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="103" mass="11283" checksum="0C7AC1919EB9DAD2" modified="2015-11-11" version="1">MLRVMISKQINQVKVDDACAYARQKGAAIAVIGVVTEWLDGATQWSGTVDVASVIVNAYDTENCKLISTASGRQNGQRFTFVNAPATRFMRPLSQEVVKSLFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT51</accession>
    <name>A0A0M2UT51_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PPC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03155</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000289">
        <property type="protein sequence ID" value="KKO18161.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18161">
        <property type="protein sequence ID" value="KKO18161"/>
        <property type="gene ID" value="BROFUL_03155"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd11378">
        <property type="entry name" value="DUF296"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005175">
        <property type="entry name" value="PPC_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03479">
        <property type="entry name" value="PCC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51742">
        <property type="entry name" value="PPC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PPC" evidence="1">
        <location>
            <begin position="4"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18161.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="149" mass="17006" checksum="6BB8DA4A05B3F826" modified="2015-11-11" version="1">MEYRKIKHTFYIRIDKGEDVTDSIKDVCRREKIQAGYFQGIGACDLAVLATYIPGKNDFTDHTISGMLEMVSLMGNITTDNNNEPFLHSHASFSYLNQNGVVVITGGHLKEAHISYTGEIILNAADEKIDRMMDLKPELRYGNYRVERW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT52</accession>
    <name>A0A0M2UT52_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">30S ribosomal protein S7</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rpsG</name>
        <name evidence="10" type="ORF">BROFUL_02270</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Part of the 30S ribosomal subunit. Contacts proteins S9 and S11.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the universal ribosomal protein uS7 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000224">
        <property type="protein sequence ID" value="KKO19027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19027">
        <property type="protein sequence ID" value="KKO19027"/>
        <property type="gene ID" value="BROFUL_02270"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2832"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.455.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00480_B">
        <property type="entry name" value="Ribosomal_S7_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000235">
        <property type="entry name" value="Ribosomal_S5/S7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005717">
        <property type="entry name" value="Ribosomal_S7_bac/org-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020606">
        <property type="entry name" value="Ribosomal_S7_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023798">
        <property type="entry name" value="Ribosomal_S7_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036823">
        <property type="entry name" value="Ribosomal_S7_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11205">
        <property type="entry name" value="PTHR11205"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00177">
        <property type="entry name" value="Ribosomal_S7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002122">
        <property type="entry name" value="RPS7p_RPS7a_RPS5e_RPS7o"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47973">
        <property type="entry name" value="SSF47973"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01029">
        <property type="entry name" value="rpsG_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00052">
        <property type="entry name" value="RIBOSOMAL_S7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 6 8" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 6 8" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="6" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_S7" evidence="9">
        <location>
            <begin position="11"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00480"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003620"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="160" mass="18238" checksum="C125D4B26FBFC3C2" modified="2015-11-11" version="1">MALAYRSTEIYLQPDVKYKSKMVSKFVNSLMRKGKKSVAEKVFYDAMGVIEKKIADVEPLEIFETAVNNVKPLVEVRSKRVGGATYQVPVEVPKQRQQSLALRWIIDAAKGKKGRPMFQRLADELLDAYKKQGVAITQRENTHKMAEANKAFAHFAWSKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT92</accession>
    <name>A0A0M2UT92_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Glycine cleavage system H protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">gcvH</name>
        <name evidence="6" type="ORF">BROFUL_02496</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>(R)-lipoate</name>
            <dbReference type="ChEBI" id="CHEBI:83088"/>
        </cofactor>
        <text evidence="3">Binds 1 lipoyl cofactor covalently.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">The glycine cleavage system is composed of four proteins: P, T, L and H.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the GcvH family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18835">
        <property type="protein sequence ID" value="KKO18835"/>
        <property type="gene ID" value="BROFUL_02496"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3100"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005960">
        <property type="term" value="C:glycine cleavage complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019464">
        <property type="term" value="P:glycine decarboxylation via glycine cleavage system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06848">
        <property type="entry name" value="GCS_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00272">
        <property type="entry name" value="GcvH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003016">
        <property type="entry name" value="2-oxoA_DH_lipoyl-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002930">
        <property type="entry name" value="GCV_H"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033753">
        <property type="entry name" value="GCV_H/Fam206"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017453">
        <property type="entry name" value="GCV_H_sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11715">
        <property type="entry name" value="PTHR11715"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01597">
        <property type="entry name" value="GCV_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00527">
        <property type="entry name" value="gcvH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00189">
        <property type="entry name" value="LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 4" id="KW-0450">Lipoyl</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lipoyl-binding" evidence="5">
        <location>
            <begin position="24"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-lipoyllysine" evidence="3 4">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR617453-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="131" mass="14607" checksum="05A06E162DD19F86" modified="2015-11-11" version="1">MTRIPNELLYTKTHEWAKKIDSNVVMMGITAHAQEQLRDIVFVELPPLGRELKAGAACAVVESVKAACDIFAPLSGKVVKINQQIQERPQLVNEDPYGEGWFLHIEVSHPDEFNALLSPAQYQAISESAHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTF7</accession>
    <name>A0A0M2UTF7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">Flagellar basal-body rod protein FlgC</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">flgC</name>
        <name evidence="8" type="ORF">BROFUL_03003</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="4 5">The basal body constitutes a major portion of the flagellar organelle and consists of four rings (L,P,S, and M) mounted on a central rod. The rod consists of about 26 subunits of FlgG in the distal portion, and FlgB, FlgC and FlgF are thought to build up the proximal portion of the rod with about 6 subunits each.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 5">Bacterial flagellum basal body</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the flagella basal body rod proteins family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18276">
        <property type="protein sequence ID" value="KKO18276"/>
        <property type="gene ID" value="BROFUL_03003"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3710"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030694">
        <property type="term" value="C:bacterial-type flagellum basal body, rod"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001444">
        <property type="entry name" value="Flag_bb_rod_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010930">
        <property type="entry name" value="Flg_bb/hook_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006299">
        <property type="entry name" value="FlgC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00460">
        <property type="entry name" value="Flg_bb_rod"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06429">
        <property type="entry name" value="Flg_bbr_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01395">
        <property type="entry name" value="FlgC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="8" id="KW-0966">Cell projection</keyword>
    <keyword evidence="8" id="KW-0969">Cilium</keyword>
    <keyword evidence="8" id="KW-0282">Flagellum</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flg_bb_rod" evidence="6">
        <location>
            <begin position="10"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="domain" description="Flg_bbr_C" evidence="7">
        <location>
            <begin position="100"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00017941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00025933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF06429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="147" mass="16205" checksum="0BE65AE2A53FD90C" modified="2015-11-11" version="1">MGMENMFSVFDISSSGLSAERIRMNVIANNIANANATETLEGGPYRREQVEFSSVLNKTMRNNNIKGTERLGGVKVQRIVKSNEPFNRIYIPGHPKADAKGFVDMPNVSVMMEMVDLVTATRSYEANLAVINSTKDMSSRALSIIGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTL0</accession>
    <name>A0A0M2UTL0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02343</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18950">
        <property type="protein sequence ID" value="KKO18950"/>
        <property type="gene ID" value="BROFUL_02343"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="63" mass="7378" checksum="88ED3997F34B3694" modified="2015-11-11" version="1">MKYLYTAEDCPKCETLKKKYRAEGIRFVERNADRIKQPEDEIDQEALVQASMQNMELPVEVNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTT0</accession>
    <name>A0A0M2UTT0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03432</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000313">
        <property type="protein sequence ID" value="KKO17884.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17884">
        <property type="protein sequence ID" value="KKO17884"/>
        <property type="gene ID" value="BROFUL_03432"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17884.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="103" mass="11732" checksum="87F15094E47B3F60" modified="2015-11-11" version="1">MPSRLPKSSCDKEGMQNSRKELAANCTKRDAFLFTIFPDLVGRDNDQIISKLEKLYTYGPYKPKVSISNNWVIREIDTPTILSQETAYRKTVALCEKRGQCGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTU3</accession>
    <name>A0A0M2UTU3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">L-seryl-tRNA(Sec) selenium transferase</fullName>
            <ecNumber evidence="5">2.9.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Selenocysteine synthase</fullName>
            <shortName evidence="5">Sec synthase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">Selenocysteinyl-tRNA(Sec) synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">selA</name>
        <name evidence="7" type="ORF">BROFUL_02032</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>H(+) + L-seryl-tRNA(Sec) + selenophosphate = L-selenocysteinyl-tRNA(Sec) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:22728"/>
            <dbReference type="Rhea" id="RHEA-COMP:9742"/>
            <dbReference type="Rhea" id="RHEA-COMP:9743"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16144"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:78533"/>
            <dbReference type="ChEBI" id="CHEBI:78573"/>
            <dbReference type="EC" id="2.9.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 5 6">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="5">Aminoacyl-tRNA biosynthesis; selenocysteinyl-tRNA(Sec) biosynthesis; selenocysteinyl-tRNA(Sec) from L-seryl-tRNA(Sec) (bacterial route): step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the SelA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.9.1.1" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19232">
        <property type="protein sequence ID" value="KKO19232"/>
        <property type="gene ID" value="BROFUL_02032"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2534"/>
    <dbReference type="UniPathway" id="UPA00906">
        <property type="reaction ID" value="UER00896"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004125">
        <property type="term" value="F:L-seryl-tRNASec selenium transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001514">
        <property type="term" value="P:selenocysteine incorporation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097056">
        <property type="term" value="P:selenocysteinyl-tRNA(Sec) biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00423">
        <property type="entry name" value="SelA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018319">
        <property type="entry name" value="SelA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004534">
        <property type="entry name" value="SelA_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03841">
        <property type="entry name" value="SelA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00474">
        <property type="entry name" value="selA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="5 6" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0711">Selenium</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="5 6">
        <location>
            <position position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00423"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR618319-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="327" mass="35329" checksum="E79E38D4CAC300F5" modified="2015-11-11" version="1">MITGAESALVVNNNAAAVLLALDTLARGKEAIISRSQLVEIGGSFRMPDVMARSGALLVEVGTTNKTYLTDYSNAITERTGLLLKVHQSNFKIVGFTETVGLKDLVSLGKERNIPVVYDLGSGALIDPERFGLPHEPTVQESIKAGVDIVTFSTDKLLGGPQGGIIAGKKKWVDLLKKNPLTRALRVGKLTIAALEATLRLYLDEELAVKKNPVLAMMFAPLEIIEERCKKLISKITPEAKALMNISTVEGLSEMGGGSLPGEGIPTKRISLLPERINADELATRLRGNTPPIFARIEQDRVLLDMRTVYDNEVDTIAVALENICSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTU9</accession>
    <name>A0A0M2UTU9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02258</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000223">
        <property type="protein sequence ID" value="KKO19035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19035">
        <property type="protein sequence ID" value="KKO19035"/>
        <property type="gene ID" value="BROFUL_02258"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="65" mass="7566" checksum="2C4E279BF7BBCA4E" modified="2015-11-11" version="1">MSIKEIELAITRLTSEELSQFTAWFEAYQAQTWDKQIENDIEAGRLDKIIKEAEESFQSGRCKPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU17</accession>
    <name>A0A0M2UU17_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Adenosylmethionine-8-amino-7-oxononanoate aminotransferase</fullName>
            <ecNumber evidence="4">2.6.1.62</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">7,8-diamino-pelargonic acid aminotransferase</fullName>
            <shortName evidence="4">DAPA AT</shortName>
            <shortName evidence="4">DAPA aminotransferase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">7,8-diaminononanoate synthase</fullName>
            <shortName evidence="4">DANS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Diaminopelargonic acid synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">bioA</name>
        <name evidence="6" type="ORF">BROFUL_02191</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only aminotransferase known to utilize SAM as an amino donor.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>(8S)-8-amino-7-oxononanoate + S-adenosyl-L-methionine = (7R,8S)-7,8-diammoniononanoate + S-adenosyl-4-methylsulfanyl-2-oxobutanoate</text>
            <dbReference type="Rhea" id="RHEA:16861"/>
            <dbReference type="ChEBI" id="CHEBI:16490"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:149468"/>
            <dbReference type="ChEBI" id="CHEBI:149469"/>
            <dbReference type="EC" id="2.6.1.62"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 4">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4">Cofactor biosynthesis; biotin biosynthesis; 7,8-diaminononanoate from 8-amino-7-oxononanoate (SAM route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.62" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000218">
        <property type="protein sequence ID" value="KKO19095.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19095">
        <property type="protein sequence ID" value="KKO19095"/>
        <property type="gene ID" value="BROFUL_02191"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2734"/>
    <dbReference type="UniPathway" id="UPA00078">
        <property type="reaction ID" value="UER00160"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004015">
        <property type="term" value="F:adenosylmethionine-8-amino-7-oxononanoate transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009102">
        <property type="term" value="P:biotin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00610">
        <property type="entry name" value="OAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00834">
        <property type="entry name" value="BioA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005815">
        <property type="entry name" value="BioA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000521">
        <property type="entry name" value="Transaminase_4ab_Lys_Orn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00508">
        <property type="entry name" value="bioA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00600">
        <property type="entry name" value="AA_TRANSFER_CLASS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="4" id="KW-0093">Biotin biosynthesis</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 4 5" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4 6" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="4">
        <location>
            <begin position="119"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="4">
        <location>
            <begin position="323"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="152"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="258"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="287"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="322"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="417"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Participates in the substrate recognition with KAPA and in a stacking interaction with the adenine ring of SAM" evidence="4">
        <location>
            <position position="22"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="4">
        <location>
            <position position="287"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00834"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19095.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="460" mass="51546" checksum="28E73B5B6A580D22" modified="2015-11-11" version="1">MIHRTYQEQLQTWDKQYLWHPFTQMQDYVKETPLIIEEGTGLFLKDVDGKEYIDGISSMWCNIHGHRKKEIDDAIKRQIDRIAHTTLLGPSNIPAIELAKRLVEIAPQGLTKAFYSDNGSTANEVALKMAFQYWQHKGLKNKTQFVALQYGYHGDTIGTMSVGGIDIYHKVFQPLYFKTHFAPAPYCYRCPVGKQPGDCTLACLEELENILRGNSDRIAAVIMEPLVQGAGGMITHPSGYLSGARALCKKYKALLILDEVLTGFGRTGKMFACKHEDVVPDIMATSKGINGGYMPLAATLATEEIYHAFLGKYAELKTFFHGHTYTGNPLGCAAALASLELFDKEQILENLEPKINYLRANLKRFELLKHVGEVRQCGLIAAIELVEDKITKAPYPWEKRVGIQVCLEARKQGLLIRPLGHIIVIMPPLCIGGQELDRLLDIIYESVKTVTQATTLPLFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU36</accession>
    <name>A0A0M2UU36_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02776</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000264">
        <property type="protein sequence ID" value="KKO18506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18506">
        <property type="protein sequence ID" value="KKO18506"/>
        <property type="gene ID" value="BROFUL_02776"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="49"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="276" mass="30827" checksum="34F7DDFEB756FFD7" modified="2015-11-11" version="1">MAEVKAIKLEETKENTSHTPAPKRERLTIGRGALQEEAEPLPASEGVLFTDKQDERDNKIETETEEEPASSLLREEKTGKESGMKMKEAREIKNSPDIQPEMPQIPPVAVPESSGVEPQRMLEKGLNVQESPGEVKKPKVSFNVNAKTEGANNDPVLFEDTISNAAIPGAPSFNVKKHEYANYFKHIRDRISLYWFLGYGTRAELKLETRDDKPVIVEFKVLPDGSVGEVKIVDDAGNFNLASRLVSSIKNAAPLNPFPSNIKEPSIDVRFNFYFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU39</accession>
    <name>A0A0M2UU39_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02781</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000264">
        <property type="protein sequence ID" value="KKO18511.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18511">
        <property type="protein sequence ID" value="KKO18511"/>
        <property type="gene ID" value="BROFUL_02781"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18511.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="74" mass="8213" checksum="AFFBE264E7DA6D78" modified="2015-11-11" version="1">MEPGITEKCDAGEAFVSAYPDSSAAKAFEEIVKKCEAFVRTRSDELDKVTEYREVPFLGKVPVDPNFVEKNPVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU41</accession>
    <name>A0A0M2UU41_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01941</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000199">
        <property type="protein sequence ID" value="KKO19342.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19342">
        <property type="protein sequence ID" value="KKO19342"/>
        <property type="gene ID" value="BROFUL_01941"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19342.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="120" mass="12438" checksum="B3EE23DD1A6052B6" modified="2015-11-11" version="1">MVLAELRRSVAETLHHGGDSDVGHLPAFLSARHADLGHAGAYRHVTADECGAPGGAALLAVVIGERQTFPCKAVNVGRLVTHHTAIVVADVPGADVITPDDENVGLFALVSGNRMACVKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU70</accession>
    <name>A0A0M2UU70_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DNA methylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02764</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000260">
        <property type="protein sequence ID" value="KKO18541.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18541">
        <property type="protein sequence ID" value="KKO18541"/>
        <property type="gene ID" value="BROFUL_02764"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3419"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008170">
        <property type="term" value="F:N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009007">
        <property type="term" value="F:site-specific DNA-methyltransferase (adenine-specific) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022749">
        <property type="entry name" value="D12N6_MeTrfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003356">
        <property type="entry name" value="DNA_methylase_A-5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12161">
        <property type="entry name" value="HsdM_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02384">
        <property type="entry name" value="N6_Mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HsdM_N" evidence="2">
        <location>
            <begin position="10"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="domain" description="N6_Mtase" evidence="1">
        <location>
            <begin position="171"/>
            <end position="482"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18541.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="655" mass="73964" checksum="158918958AE30445" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU77</accession>
    <name>A0A0M2UU77_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">30S ribosomal protein S17</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rpsQ</name>
        <name evidence="6" type="ORF">BROFUL_01914</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Part of the 30S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 3 4">Belongs to the universal ribosomal protein uS17 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19387.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19387">
        <property type="protein sequence ID" value="KKO19387"/>
        <property type="gene ID" value="BROFUL_01914"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2383"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01345_B">
        <property type="entry name" value="Ribosomal_S17_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019984">
        <property type="entry name" value="Ribosomal_S17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000266">
        <property type="entry name" value="Ribosomal_S17/S11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019979">
        <property type="entry name" value="Ribosomal_S17_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10744">
        <property type="entry name" value="PTHR10744"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00366">
        <property type="entry name" value="Ribosomal_S17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00973">
        <property type="entry name" value="RIBOSOMALS17"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03635">
        <property type="entry name" value="uS17_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00056">
        <property type="entry name" value="RIBOSOMAL_S17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 4 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 3 5" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003873"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19387.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="89" mass="10554" checksum="BC9B6D5AC2F65749" modified="2015-11-11" version="1">MDTDNVRVRRRKVVGMVIGDKMQKTIVVEVTRMIRHSRYGKYIKRSIIYKAHDENRQAKVGDKVEIIETRPLSKTKFTRLVRIVEKANR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU94</accession>
    <name>A0A0M2UU94_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03253</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000298">
        <property type="protein sequence ID" value="KKO18054.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18054">
        <property type="protein sequence ID" value="KKO18054"/>
        <property type="gene ID" value="BROFUL_03253"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18054.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="38" mass="4335" checksum="4B1C483BFAFB83CD" modified="2015-11-11" version="1">MKLIINLINATIYNRLKRVKGVVLIGRESNDVPVKLRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUA8</accession>
    <name>A0A0M2UUA8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8 13">Glutamyl-tRNA reductase</fullName>
            <shortName evidence="8">GluTR</shortName>
            <ecNumber evidence="4 8 13">1.2.1.70</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">hemA</name>
        <name evidence="17" type="ORF">BROFUL_01879</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8 13">
            <text>(S)-4-amino-5-oxopentanoate + NADP(+) + tRNA(Glu) = H(+) + L-glutamyl-tRNA(Glu) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:12344"/>
            <dbReference type="Rhea" id="RHEA-COMP:9663"/>
            <dbReference type="Rhea" id="RHEA-COMP:9680"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57501"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78520"/>
            <dbReference type="EC" id="1.2.1.70"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8 13">Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; 5-aminolevulinate from L-glutamyl-tRNA(Glu): step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="domain">
        <text evidence="8">Possesses an unusual extended V-shaped dimeric structure with each monomer consisting of three distinct domains arranged along a curved 'spinal' alpha-helix. The N-terminal catalytic domain specifically recognizes the glutamate moiety of the substrate. The second domain is the NADPH-binding domain, and the third C-terminal domain is responsible for dimerization.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="8">During catalysis, the active site Cys acts as a nucleophile attacking the alpha-carbonyl group of tRNA-bound glutamate with the formation of a thioester intermediate between enzyme and glutamate, and the concomitant release of tRNA(Glu). The thioester intermediate is finally reduced by direct hydride transfer from NADPH, to form the product GSA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8 13">Belongs to the glutamyl-tRNA reductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.70" evidence="4 8 13"/>
    <dbReference type="EMBL" id="LAQJ01000194">
        <property type="protein sequence ID" value="KKO19417.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19417">
        <property type="protein sequence ID" value="KKO19417"/>
        <property type="gene ID" value="BROFUL_01879"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2343"/>
    <dbReference type="UniPathway" id="UPA00251">
        <property type="reaction ID" value="UER00316"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008883">
        <property type="term" value="F:glutamyl-tRNA reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006782">
        <property type="term" value="P:protoporphyrinogen IX biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00087">
        <property type="entry name" value="Glu_tRNA_reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000343">
        <property type="entry name" value="4pyrrol_synth_GluRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015896">
        <property type="entry name" value="4pyrrol_synth_GluRdtase_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015895">
        <property type="entry name" value="4pyrrol_synth_GluRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018214">
        <property type="entry name" value="GluRdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036453">
        <property type="entry name" value="GluRdtase_dimer_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036343">
        <property type="entry name" value="GluRdtase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006151">
        <property type="entry name" value="Shikm_DH/Glu-tRNA_Rdtase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00745">
        <property type="entry name" value="GlutR_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05201">
        <property type="entry name" value="GlutR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01488">
        <property type="entry name" value="Shikimate_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000445">
        <property type="entry name" value="4pyrrol_synth_GluRdtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69075">
        <property type="entry name" value="SSF69075"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69742">
        <property type="entry name" value="SSF69742"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01035">
        <property type="entry name" value="hemA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00747">
        <property type="entry name" value="GLUTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8 11" id="KW-0521">NADP</keyword>
    <keyword evidence="6 8 13" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7 8 13" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GlutR_N" evidence="16">
        <location>
            <begin position="6"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="domain" description="Shikimate_DH" evidence="15">
        <location>
            <begin position="171"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="domain" description="GlutR_dimer" evidence="14">
        <location>
            <begin position="321"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8 10">
        <location>
            <begin position="49"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8 10">
        <location>
            <begin position="114"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="8 9">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="109"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="120"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 11">
        <location>
            <begin position="189"/>
            <end position="194"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="site" description="Important for activity" evidence="8 12">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001415"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000445-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR000445-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR000445-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR000445-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU000584"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF00745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF01488"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF05201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="KKO19417.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="426" mass="48335" checksum="E929662827CD002E" modified="2015-11-11" version="1">MSILVVGLNHKSAPVEVREKIAFNATNIPTALSLFLHRYQTAESVILSTCNRVEMYASTMDGGVKTEDILSFFADFHKIALDEFSPYMYHYTDDRAVDHLFFVTASLDSMVLGESQILSQVKEAYTTASMEEATGKVMNQLFQQALNVAKIVHTRTAIGKKKVSISSVAVEFAEKIFQDFTGKMVLVVGAGEMCELLLKHLYEEGARTIVVANRTFERAQEIANAFQGQAIKYELLGEYLAKADIIISSTSAPHYVIHANQVKDAIRHRRGNPMFLLDIAVPRDIEPEIANIDNVYLYNIDDLQSVVSQNIDERTREVEKCRAIIEEEVEHFMARLEEMKIEPAITLLRNHFHTIGKEELCRLKPKLKSIDNGEWEQVVYTVERTINKLLHHPAKVAKQEAKNGGGYRYVEIIRKLFGIFHHTDQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUC5</accession>
    <name>A0A0M2UUC5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 16">Homoserine dehydrogenase</fullName>
            <ecNumber evidence="6 16">1.1.1.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="19" type="ORF">BROFUL_02078</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>L-homoserine + NAD(+) = H(+) + L-aspartate 4-semialdehyde + NADH</text>
            <dbReference type="Rhea" id="RHEA:15757"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57476"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:537519"/>
            <dbReference type="EC" id="1.1.1.3"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 16">
            <text>L-homoserine + NADP(+) = H(+) + L-aspartate 4-semialdehyde + NADPH</text>
            <dbReference type="Rhea" id="RHEA:15761"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57476"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:537519"/>
            <dbReference type="EC" id="1.1.1.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4 16">Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-homoserine from L-aspartate: step 3/3.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 16">Amino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 3/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 17">Belongs to the homoserine dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.3" evidence="6 16"/>
    <dbReference type="EMBL" id="LAQJ01000209">
        <property type="protein sequence ID" value="KKO19200.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19200">
        <property type="protein sequence ID" value="KKO19200"/>
        <property type="gene ID" value="BROFUL_02078"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2592"/>
    <dbReference type="UniPathway" id="UPA00050">
        <property type="reaction ID" value="UER00063"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00051">
        <property type="reaction ID" value="UER00465"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004412">
        <property type="term" value="F:homoserine dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009086">
        <property type="term" value="P:methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009088">
        <property type="term" value="P:threonine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005106">
        <property type="entry name" value="Asp/hSer_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016204">
        <property type="entry name" value="HDH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001342">
        <property type="entry name" value="HDH_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019811">
        <property type="entry name" value="HDH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01842">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00742">
        <property type="entry name" value="Homoserine_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03447">
        <property type="entry name" value="NAD_binding_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000098">
        <property type="entry name" value="Homoser_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01042">
        <property type="entry name" value="HOMOSER_DHGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 16" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="16" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="9 16" id="KW-0412">Isoleucine biosynthesis</keyword>
    <keyword evidence="13 16" id="KW-0486">Methionine biosynthesis</keyword>
    <keyword evidence="11 15 16" id="KW-0521">NADP</keyword>
    <keyword evidence="12 16" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10 16" id="KW-0791">Threonine biosynthesis</keyword>
    <feature type="domain" description="ACT" evidence="18">
        <location>
            <begin position="353"/>
            <end position="431"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="14">
        <location>
            <position position="206"/>
        </location>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <begin position="9"/>
            <end position="16"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="106"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="191"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00006753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00013213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00013376"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRSR" id="PIRSR000098-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PIRSR" id="PIRSR000098-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="RuleBase" id="RU000579"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="RuleBase" id="RU004171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="KKO19200.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="432" mass="46685" checksum="A4C22FE9C5C6D3AD" modified="2015-11-11" version="1">MKAFNVGLIGMGTVGAGVARILLEKKSPLLEKLDCVPVLKGIADSNPEVKSKLNLPSEILFTTDGQQLLNNPDIQVIVELIGGVHPAKEIITAALEKGKDVVTANKMLLALHGSELFRKARQHGKSISFEASVGGGIPIIAALRDGFIANRIESICGIVNGTTNYILTKMTKEQVTYSDALAEAQKLGYAEKDPTMDVEGIDSSHKLAILARIGFGTDFDYARIYHEGIRSVDLSDIWYAHELGYTLKLLAIAKKDNDTIELRVHPALLPHDHPLSSVQGVFNAICITGSAVGEAMLYGKGAGQMPTASAVVADLVDVALGRAGITFSAMKTFSRGSERFAIADVLQFKTCYYLRFSVVDKPGVLAKISGILGKYEISIASVIQHKAKENGNVPLVMMTHRAEEGNLQKALAEIQQLDTIKDDTKFLRVEEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUC8</accession>
    <name>A0A0M2UUC8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01645</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000172">
        <property type="protein sequence ID" value="KKO19648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19648">
        <property type="protein sequence ID" value="KKO19648"/>
        <property type="gene ID" value="BROFUL_01645"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19648.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="37" mass="4352" checksum="E2EB2C735F5464F1" modified="2015-11-11" version="1" fragment="single">MSERLLHFARNDNVQCIIKVHGRCHCEGPFPKQSPRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUP7</accession>
    <name>A0A0M2UUP7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_03107</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000286">
        <property type="protein sequence ID" value="KKO18209.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18209">
        <property type="protein sequence ID" value="KKO18209"/>
        <property type="gene ID" value="BROFUL_03107"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021796">
        <property type="entry name" value="DUF3365"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11845">
        <property type="entry name" value="DUF3365"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 11" id="KW-0418">Kinase</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="199"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="10">
        <location>
            <begin position="226"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="8">
        <location>
            <begin position="312"/>
            <end position="531"/>
        </location>
    </feature>
    <feature type="domain" description="Response regulatory" evidence="9">
        <location>
            <begin position="558"/>
            <end position="671"/>
        </location>
    </feature>
    <feature type="domain" description="Response regulatory" evidence="9">
        <location>
            <begin position="682"/>
            <end position="798"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="6">
        <location>
            <position position="607"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="6">
        <location>
            <position position="731"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO18209.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="809" mass="90813" checksum="43B34F070B0CB1A6" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUY0</accession>
    <name>A0A0M2UUY0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Lactoylglutathione lyase</fullName>
            <ecNumber evidence="2">4.4.1.5</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">gloA</name>
        <name evidence="2" type="ORF">BROFUL_01412</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.4.1.5" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000146">
        <property type="protein sequence ID" value="KKO19853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19853">
        <property type="protein sequence ID" value="KKO19853"/>
        <property type="gene ID" value="BROFUL_01412"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1743"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004462">
        <property type="term" value="F:lactoylglutathione lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004360">
        <property type="entry name" value="Glyas_Fos-R_dOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00903">
        <property type="entry name" value="Glyoxalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="4"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="127" mass="14557" checksum="3063A724FE681F61" modified="2015-11-11" version="1">MFKRVDHVEIVPGNAEKTIDFYVNVLGFKMKNRKEMKIPPMREIIYIELGDTVVEIISVDEPKPKPENLWEVGYRGIALEVDDMTVAVDYLKGKGIAIAKEPIDLGNSFRGEIRDPDGLLIELRQWK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUZ4</accession>
    <name>A0A0M2UUZ4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Flavoprotein norVW and fprA</fullName>
            <ecNumber evidence="2">1.-.-.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">fprA</name>
        <name evidence="2" type="ORF">BROFUL_01427</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.-.-.-" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000146">
        <property type="protein sequence ID" value="KKO19868.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19868">
        <property type="protein sequence ID" value="KKO19868"/>
        <property type="gene ID" value="BROFUL_01427"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008254">
        <property type="entry name" value="Flavodoxin/NO_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00258">
        <property type="entry name" value="Flavodoxin_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50902">
        <property type="entry name" value="FLAVODOXIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavodoxin-like" evidence="1">
        <location>
            <begin position="4"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19868.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="146" mass="16577" checksum="132A02C652A421A9" modified="2015-11-11" version="1">MKKALIGYYSRTGKTEKMAEYLAEGVRFSGNDVEMKKISEIKTEKDLQGFDGYLFGCPTYHKDMTENFKTFLFLAQKVKLEGKLGGAFGPHTHSGEAPKIIFDTMEFVYQMKMTNLGALILKENIVETTEGMRACQTYGRDFGKRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV12</accession>
    <name>A0A0M2UV12_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">FAD:protein FMN transferase</fullName>
            <ecNumber evidence="3">2.7.1.180</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Flavin transferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BROFUL_02986</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>FAD + L-threonyl-[protein] = AMP + FMN-L-threonyl-[protein] + H(+)</text>
            <dbReference type="Rhea" id="RHEA:36847"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11061"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
            <dbReference type="ChEBI" id="CHEBI:74257"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.7.1.180"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.180" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000281">
        <property type="protein sequence ID" value="KKO18329.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18329">
        <property type="protein sequence ID" value="KKO18329"/>
        <property type="gene ID" value="BROFUL_02986"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3692"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017013">
        <property type="term" value="P:protein flavinylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.520.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024932">
        <property type="entry name" value="ApbE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003374">
        <property type="entry name" value="ApbE-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007329">
        <property type="entry name" value="FMN-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30040">
        <property type="entry name" value="PTHR30040"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02424">
        <property type="entry name" value="ApbE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04205">
        <property type="entry name" value="FMN_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00900">
        <property type="entry name" value="FMN_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143631">
        <property type="entry name" value="SSF143631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="13" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0732">Signal</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="signal peptide" evidence="11">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644026" description="FAD:protein FMN transferase" evidence="11">
        <location>
            <begin position="17"/>
            <end position="595"/>
        </location>
    </feature>
    <feature type="domain" description="FMN_bind" evidence="12">
        <location>
            <begin position="111"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="227"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="239"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001219"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011955"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00016337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00031306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM00900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO18329.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="595" mass="66126" checksum="8D4CBB65198DB758" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV86</accession>
    <name>A0A0M2UV86_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PINc domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01561</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000163">
        <property type="protein sequence ID" value="KKO19727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19727">
        <property type="protein sequence ID" value="KKO19727"/>
        <property type="gene ID" value="BROFUL_01561"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002716">
        <property type="entry name" value="PIN_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01850">
        <property type="entry name" value="PIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PINc" evidence="1">
        <location>
            <begin position="3"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="140" mass="15791" checksum="6ED9A45FA844A0D5" modified="2015-11-11" version="1">MIVYIDTSDLVKLYIDEIGSDTIQEIVHKATVLSTSKVAYAEARSAFARKQRDDGFSAKVLRKIVEDFNRDWESYFLIEVTDGLIRSAGDIAEKHLLRGFDSIHLASAMNLKHKIGPRVYFSSNDEKLNQAAEKEGIIVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV93</accession>
    <name>A0A0M2UV93_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Antitoxin VapB32</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01782</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000186">
        <property type="protein sequence ID" value="KKO19505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19505">
        <property type="protein sequence ID" value="KKO19505"/>
        <property type="gene ID" value="BROFUL_01782"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019239">
        <property type="entry name" value="VapB_antitoxin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09957">
        <property type="entry name" value="VapB_antitoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="78" mass="8506" checksum="565240CE616EB4B8" modified="2015-11-11" version="1">MHILKHLLLGGKFMRTTINIDDALLDKAAKLTGIGEKTSLVRLALEALIAQESARRLAKLGGTEKKLKMIPRRKATGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVC8</accession>
    <name>A0A0M2UVC8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Dephospho-CoA kinase</fullName>
            <ecNumber evidence="1">2.7.1.24</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Dephosphocoenzyme A kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">coaE</name>
        <name evidence="2" type="ORF">BROFUL_01285</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>3'-dephospho-CoA + ATP = ADP + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:18245"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57328"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.24"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; coenzyme A biosynthesis; CoA from (R)-pantothenate: step 5/5.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the CoaE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.24" evidence="1"/>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20013">
        <property type="protein sequence ID" value="KKO20013"/>
        <property type="gene ID" value="BROFUL_01285"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1586"/>
    <dbReference type="UniPathway" id="UPA00241">
        <property type="reaction ID" value="UER00356"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004140">
        <property type="term" value="F:dephospho-CoA kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015937">
        <property type="term" value="P:coenzyme A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00376">
        <property type="entry name" value="Dephospho_CoA_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001977">
        <property type="entry name" value="Depp_CoAkinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01121">
        <property type="entry name" value="CoaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00152">
        <property type="entry name" value="TIGR00152"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51219">
        <property type="entry name" value="DPCK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0173">Coenzyme A biosynthesis</keyword>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 2" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="15"/>
            <end position="20"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00376"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="203" mass="23524" checksum="3CD8B04E250045BD" modified="2015-11-11" version="1">MNSKPKVIGITGGISSGKSTIARMLASLGAEVIDADEMCHKLFFTKGIKAKIIERFGNSILDMYGKIDRSRLAEIVFQNKTSLGDLCSILHPIVIEQIRLRIDEIENRRRRKVVVIDAALLEESDLSLLCDYIIFVNTGRDHRVNRSKISRHWQDGELEKRERFQMSLEDKRKKSDYIIDNNFTEENTYRQIKEFWQLYLGKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVG4</accession>
    <name>A0A0M2UVG4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Putative C4-dicarboxylate transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_02369</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18976">
        <property type="protein sequence ID" value="KKO18976"/>
        <property type="gene ID" value="BROFUL_02369"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004695">
        <property type="entry name" value="SLAC1/Mae1/Ssu1/TehA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038665">
        <property type="entry name" value="Voltage-dep_anion_channel_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03595">
        <property type="entry name" value="SLAC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="25"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="50"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="90"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="118"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="153"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="186"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="262"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="292"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="325"/>
            <end position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="429" mass="48962" checksum="732AF9B29BFA2644" modified="2015-11-11" version="1">MVELFWLRLCCVMSIFKIATYSLDIRWFTASMATMMIASVSHVYGLEAIVPYFFITSLVIFLSILVFQAIRLIVFYKDSVSELLNPEKSLYFFTFVAAINLLGGCLSKIFHFHTTASIFWYVAITFWLGISLASFSILFLYQKSQDRKIEILHGGWFFATVGTQSTAFLGIIVAEHATQYVTCIHLFSFALWSIGASLYLIIAVFIVLRLVFYPFSNDTPLSPYWMNTGAAALTALTGTVLYQHIHIVNGPFVDFLPFLKGISLFFLSVGLWWLPFLVVLAIRRHISRNDSLVFSVGYWEIAFALGICAYSTIHMVRLFGGQYLVVASVCFYISCIILWCFSSVFTVVHLARSSVWVPVNDLTINYVVPSSFKLRGSVFEVKKIVNEWLDQTVQGVLRKRYCVVINNNLTCLISYDMLAKKWYFDQIKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVL0</accession>
    <name>A0A0M2UVL0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02759</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000259">
        <property type="protein sequence ID" value="KKO18544.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18544">
        <property type="protein sequence ID" value="KKO18544"/>
        <property type="gene ID" value="BROFUL_02759"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18544.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="42" mass="4765" checksum="7E7431403C7FD8A5" modified="2015-11-11" version="1" fragment="single">KCMVAVIARPFPKQSPRFHKRNLVAAVPRYELLVVIASKESN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVL4</accession>
    <name>A0A0M2UVL4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">SsrA-binding protein</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Small protein B</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">smpB</name>
        <name evidence="4" type="ORF">BROFUL_01707</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA; the nascent peptide is terminated with the 'tag peptide' encoded by the tmRNA and targeted for degradation. The ribosome is freed to recommence translation, which seems to be the essential function of trans-translation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="3">The tmRNA-SmpB complex associates with stalled 70S ribosomes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the SmpB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000176">
        <property type="protein sequence ID" value="KKO19600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19600">
        <property type="protein sequence ID" value="KKO19600"/>
        <property type="gene ID" value="BROFUL_01707"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2113"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070929">
        <property type="term" value="P:trans-translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd09294">
        <property type="entry name" value="SmpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00023">
        <property type="entry name" value="SmpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023620">
        <property type="entry name" value="SmpB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000037">
        <property type="entry name" value="SsrA-bd_prot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020081">
        <property type="entry name" value="SsrA-bd_prot_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30308">
        <property type="entry name" value="PTHR30308"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01668">
        <property type="entry name" value="SmpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74982">
        <property type="entry name" value="SSF74982"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00086">
        <property type="entry name" value="smpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01317">
        <property type="entry name" value="SSRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0694">RNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19600.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="145" mass="17181" checksum="0CE4156A728DF154" modified="2015-11-11" version="1">MEIIAKNRKAYFQYEILEKFETGIVLTGTEVKSIRNKDVSINESYAHVDNGEVFMHEMHIGHYKQGNRQNHEPKRIRKLLLHKREINKIIGKVKQKGYTMVPLSLYYKEGRVKAELALVRGKTTIDKREDIKKRTIEREIQRAMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVM7</accession>
    <name>A0A0M2UVM7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Methionine--tRNA ligase</fullName>
            <ecNumber evidence="7">6.1.1.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Methionyl-tRNA synthetase</fullName>
            <shortName evidence="7">MetRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">metG</name>
        <name evidence="11" type="ORF">BROFUL_01650</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 7">Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ATP + L-methionine + tRNA(Met) = AMP + diphosphate + L-methionyl-tRNA(Met)</text>
            <dbReference type="Rhea" id="RHEA:13481"/>
            <dbReference type="Rhea" id="RHEA-COMP:9667"/>
            <dbReference type="Rhea" id="RHEA-COMP:9698"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78530"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.10"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="7">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2A subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.10" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19615.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19615">
        <property type="protein sequence ID" value="KKO19615"/>
        <property type="gene ID" value="BROFUL_01650"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2038"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004825">
        <property type="term" value="F:methionine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006431">
        <property type="term" value="P:methionyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07957">
        <property type="entry name" value="Anticodon_Ia_Met"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00814">
        <property type="entry name" value="MetRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01228">
        <property type="entry name" value="Met_tRNA_synth_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041872">
        <property type="entry name" value="Anticodon_Met"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013155">
        <property type="entry name" value="M/V/L/I-tRNA-synth_anticd-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014758">
        <property type="entry name" value="Met-tRNA_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023457">
        <property type="entry name" value="Met-tRNA_synth_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015413">
        <property type="entry name" value="Methionyl/Leucyl_tRNA_Synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033911">
        <property type="entry name" value="MetRS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43326">
        <property type="entry name" value="PTHR43326"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08264">
        <property type="entry name" value="Anticodon_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09334">
        <property type="entry name" value="tRNA-synt_1g"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01041">
        <property type="entry name" value="TRNASYNTHMET"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="SSF47323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00398">
        <property type="entry name" value="metG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7 8" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="4 7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 7 8" id="KW-0436">Ligase</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 7 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 7 8" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="tRNA-synt_1g" evidence="10">
        <location>
            <begin position="7"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="domain" description="tRNA-synt_1g" evidence="10">
        <location>
            <begin position="154"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="domain" description="Anticodon_1" evidence="9">
        <location>
            <begin position="392"/>
            <end position="467"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="7">
        <location>
            <begin position="13"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="7">
        <location>
            <begin position="296"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="128"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="131"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="145"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="148"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003314"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01228"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU363039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF08264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF09334"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO19615.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="506" mass="58906" checksum="15D96BF2400095C1" modified="2015-11-11" version="1">MSKNTFYLTTPIYYVNDIPHIGHSYTTIAADVLARYKRARNSNVLFLTGTDEHGQKIQKAAQTGNKSPLEFVNDVVEKFKTLWNDLNISHDDFIRTTEERHCRRVKKIFQQIHENGDIYEGEYEGWYCIPCESFWIESQLKEKKCPECNRAVEKVKEKNYFFRLSKYQKNLLEYYDKHPSFVQPESRRNELLQRMKFQIEDVSISRSAVEWGIPVPSDPTHTIYVWIDALLNYITALGYDDDPQTFHKYWPANVHIIGKEILWFHGVIWPAILMSLKIDLPLKIFAHGWWTIEGQKISKSLGNAIDPHSIIRSYGTDAYRYFLLREVPFGSDGNFSYSALIQRINSDLGNDLGNLLQRTLTMIEKYFQGIIPEVPRADDELMMASRVARDTMDHEMEDLQFSRALEIIWEFIGKANKFIEDKKPWLLAKTAESRPQLVSVIGTLAQAIKDISVFIYPFMPTTAAEIQRQLGILENDRPPCLAFQEHFQEGTITRRGKPLFPRIESV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVP2</accession>
    <name>A0A0M2UVP2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ABC transporter ATP-binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_02727</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000253">
        <property type="protein sequence ID" value="KKO18579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18579">
        <property type="protein sequence ID" value="KKO18579"/>
        <property type="gene ID" value="BROFUL_02727"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="27"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="116"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="193"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="220"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="32"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="399"/>
            <end position="633"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="432"/>
            <end position="439"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO18579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="675" mass="76319" checksum="B0311BA750731875" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVT0</accession>
    <name>A0A0M2UVT0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01344</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000139">
        <property type="protein sequence ID" value="KKO19952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19952">
        <property type="protein sequence ID" value="KKO19952"/>
        <property type="gene ID" value="BROFUL_01344"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="117" mass="13222" checksum="DCEA9D6922FFB45F" modified="2015-11-11" version="1">MGYSSYLRPRFETISEEGIEGIIDLANLNSQDAKKIEADPELFFSLTYPTSDILKVIEQINVRFSTKKNSSGLFLFEGLKGSGKSHLLLFIYNLFSHTAIAQNWLKRNNLTALSLMT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVT8</accession>
    <name>A0A0M2UVT8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02695</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000248">
        <property type="protein sequence ID" value="KKO18609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18609">
        <property type="protein sequence ID" value="KKO18609"/>
        <property type="gene ID" value="BROFUL_02695"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3333"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="273"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="13"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="316" mass="36231" checksum="DCBB1667A4D27955" modified="2015-11-11" version="1">MKREENKQTKIAIVIPVYNRKAHTLNCLRQLQMIDKTGMDITIVVVDDGSSDGTSELVATEYPEVVILRGDGNLWWSGATNMGVKYALDQKSDYVLALNDDVEFQGDFLVQLLKTAKSYDNTIVCGIVCDTDRKDKIMSAGLRAKGFLNYIYTGHLSGADVSALPENEFASDITAGRAVLIPTEVFREVGLFDAQKFPHHMGDMDFILRAKKKGFKVLVNPRSFVYTKIGDNYFPIQIIEKSVWQNIKGFFHVKSTVNFRTRWNFYLRHTPYFLGWISFLYFCLRMSIVIIYKILMPKQMLVRVMKKRSLKVQSMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVZ1</accession>
    <name>A0A0M2UVZ1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01546</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000160">
        <property type="protein sequence ID" value="KKO19745.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19745">
        <property type="protein sequence ID" value="KKO19745"/>
        <property type="gene ID" value="BROFUL_01546"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1909"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1520.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007153">
        <property type="entry name" value="Adenosine_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036902">
        <property type="entry name" value="Ta1353-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04008">
        <property type="entry name" value="Adenosine_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103165">
        <property type="entry name" value="SSF103165"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19745.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="65" mass="6997" checksum="4499EE9BC2B16148" modified="2015-11-11" version="1">MLEIKPVALEIPDGANVILGQTHFIKTAEDLYEAMVNAAPDIQLGLPSVRHPVRALSGQKAITPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW42</accession>
    <name>A0A0M2UW42_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02095</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000210">
        <property type="protein sequence ID" value="KKO19186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19186">
        <property type="protein sequence ID" value="KKO19186"/>
        <property type="gene ID" value="BROFUL_02095"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="90" mass="10479" checksum="D48920A6CBC3CB37" modified="2015-11-11" version="1">MATQHRRKKATFALNETILKDAKEIAHEADYRSLNDFVETAIGEMIKRHRKKEIKRQLSAASRDSLFLADIAKAQRDFQDTDWESLEKDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW53</accession>
    <name>A0A0M2UW53_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02561</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000238">
        <property type="protein sequence ID" value="KKO18729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18729">
        <property type="protein sequence ID" value="KKO18729"/>
        <property type="gene ID" value="BROFUL_02561"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002938">
        <property type="entry name" value="FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01494">
        <property type="entry name" value="FAD_binding_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD_binding_3" evidence="1">
        <location>
            <begin position="4"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="domain" description="FAD_binding_3" evidence="1">
        <location>
            <begin position="114"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="324" mass="36832" checksum="38E4338B3CEF1E8D" modified="2015-11-11" version="1">MVLEYDVVVVGAGPSGAAAARGLINAGLKVLVIEKKKLPRYKICSGIIFKKSQELTTKYFGDIPPSAYVTPNFLKGVRFWDQHGHSTDWPFSKDGDGAPNIWRSEYDSWLIKNSGAEVWDCCNLKGFTTSADHVSLECYRATRNEKTEIKCTYLISAEGSRSFIRATLDPSFEKSLKWFVAYQNYYEGHSDVDPYFYHGFLDPQYGDVYAWFNVKDGLQIFGTAVKMGKKLSSCLNHYTKMLENKFGLRLTKLVRKAGCLGNDMCTTGRFYLGRGNILLVGEQRDFSMPLARGFRAHYQPVWLRQRQSVKANHQEAMRSHYIPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW64</accession>
    <name>A0A0M2UW64_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02084</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000209">
        <property type="protein sequence ID" value="KKO19206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19206">
        <property type="protein sequence ID" value="KKO19206"/>
        <property type="gene ID" value="BROFUL_02084"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="84" mass="9747" checksum="5B336BAA0571A0C5" modified="2015-11-11" version="1">MTACLHSATLENLITAEELAEITWAALRQFQIIDFKGKEASKMRLRAQYREDAEESLKLLTKKPSVPQEVLRKIRSILDEKFQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWF9</accession>
    <name>A0A0M2UWF9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01126</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20167">
        <property type="protein sequence ID" value="KKO20167"/>
        <property type="gene ID" value="BROFUL_01126"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="90"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="124"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="15"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="40"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="183" mass="20233" checksum="75F493419C258AF6" modified="2015-11-11" version="1">MAIWKKILKKKGVEEELPKKNDPESAPANIQSATPEETPPAKEQPKREEPIPEKPPEEISGETRDEMGKYVSGGVFVFDKKISGFFGKGFWGLLSVFIFPPVLVFALSLLVIVCMLVFPLLTLVLLAFIPAVFVTLSVLIIALPVLFPLLILFLLITGKGKLLLGSEGKWFGIEMFGKSYTLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX36</accession>
    <name>A0A0M2UX36_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00659</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000087">
        <property type="protein sequence ID" value="KKO20623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20623">
        <property type="protein sequence ID" value="KKO20623"/>
        <property type="gene ID" value="BROFUL_00659"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="158" mass="17357" checksum="3168A614A41E5DD1" modified="2015-11-11" version="1">MRKNALYAVVTGDIVGSSKLTTSQRRCLLLVLKSSFTTIKNLLPDGIRAPFEIHRGDSFQGVLSRPDAALRVAIAIRTSLRHGFETKQRRHALDARIAVGIGRIDFLPASRGSEGDGEAFRRSGQTLDEMKGDQRLLIRTPWQEVDGELDAACALLDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX51</accession>
    <name>A0A0M2UX51_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00808</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000103">
        <property type="protein sequence ID" value="KKO20452.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20452">
        <property type="protein sequence ID" value="KKO20452"/>
        <property type="gene ID" value="BROFUL_00808"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20452.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="89" mass="10022" checksum="7B825D8C067BC929" modified="2015-11-11" version="1">MINFKKKINKKKIVSICPVGMIKTKCPSIRQTRKIRVKLLTLQRENNSDPSQISKLRSALKTKKNRGIAVDCETCSFNVKESTATAVSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX56</accession>
    <name>A0A0M2UX56_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Protein-export membrane protein SecG</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_00813</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Involved in protein export. Participates in an early event of protein translocation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the SecG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000103">
        <property type="protein sequence ID" value="KKO20457.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20457">
        <property type="protein sequence ID" value="KKO20457"/>
        <property type="gene ID" value="BROFUL_00813"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1029"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015450">
        <property type="term" value="F:protein-transporting ATPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004692">
        <property type="entry name" value="SecG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03840">
        <property type="entry name" value="SecG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00810">
        <property type="entry name" value="secG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 9" id="KW-0653">Protein transport</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9" id="KW-0811">Translocation</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 9" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="7"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="31"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="81"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="112"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="118"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008445"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU365087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO20457.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="196" mass="21208" checksum="62C77EF906F4FBA5" modified="2015-11-11" version="1">MVKAEKAFKWGIAIIVIFGILNAFYFLNLIIAFKIVLPILCVFMIGSILLQSGKGGGLAAIGGLGDQSAFGTRTSTFLTKVTYLIGAAFIVATVFLFKLSISSHMMHTMVPQEGPGVPHTHNHEHDAQHEHHDVPHPEGKEGSSANIGMQEVKEESSKVTVQESPHQADVKGEVPTEKPMGVNPVQEEEKAPENTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX85</accession>
    <name>A0A0M2UX85_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ATP synthase epsilon chain</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">ATP synthase F1 sector epsilon subunit</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">F-ATPase epsilon subunit</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6 8" type="primary">atpC</name>
        <name evidence="8" type="ORF">BROFUL_01693</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Produces ATP from ADP in the presence of a proton gradient across the membrane.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a, b and c.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the ATPase epsilon chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000176">
        <property type="protein sequence ID" value="KKO19586.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19586">
        <property type="protein sequence ID" value="KKO19586"/>
        <property type="gene ID" value="BROFUL_01693"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045261">
        <property type="term" value="C:proton-transporting ATP synthase complex, catalytic core F(1)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd12152">
        <property type="entry name" value="F1-ATPase_delta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00530">
        <property type="entry name" value="ATP_synth_epsil_bac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001469">
        <property type="entry name" value="ATP_synth_F1_dsu/esu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020546">
        <property type="entry name" value="ATP_synth_F1_dsu/esu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036771">
        <property type="entry name" value="ATPsynth_dsu/esu_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02823">
        <property type="entry name" value="ATP-synt_DE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51344">
        <property type="entry name" value="SSF51344"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0139">CF(1)</keyword>
    <keyword evidence="6" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 6" id="KW-0406">Ion transport</keyword>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ATP-synt_DE_N" evidence="7">
        <location>
            <begin position="7"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005712"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00530"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19586.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="134" mass="15015" checksum="E3C21B07EB59E934" modified="2015-11-11" version="1">MNNASFPLNIVTPAKIVKKDITYIRVKDETGFFGILKGHANFLTVLAPSLVYYTDSSGKEIFLAIDEGLLSVREGTVTITSKEVFESDDAEKLAEIIDNTLAKRDKSEMAFREMFEGIERSFMEKTIKLVKGRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX86</accession>
    <name>A0A0M2UX86_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01124</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20165">
        <property type="protein sequence ID" value="KKO20165"/>
        <property type="gene ID" value="BROFUL_01124"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1394"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045063">
        <property type="entry name" value="Dynamin_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00350">
        <property type="entry name" value="Dynamin_N"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="482"/>
            <end position="498"/>
        </location>
    </feature>
    <feature type="domain" description="Dynamin_N" evidence="2">
        <location>
            <begin position="54"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="domain" description="Dynamin_N" evidence="2">
        <location>
            <begin position="114"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="581" mass="67467" checksum="9F22101748FB750B" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX96</accession>
    <name>A0A0M2UX96_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pseudouridine synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01028</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20180">
        <property type="protein sequence ID" value="KKO20180"/>
        <property type="gene ID" value="BROFUL_01028"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140098">
        <property type="term" value="F:catalytic activity, acting on RNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009982">
        <property type="term" value="F:pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034470">
        <property type="term" value="P:ncRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001522">
        <property type="term" value="P:pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02869">
        <property type="entry name" value="PseudoU_synth_RluA_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000048">
        <property type="entry name" value="IQ_motif_EF-hand-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006224">
        <property type="entry name" value="PsdUridine_synth_RluC/D_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006145">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00849">
        <property type="entry name" value="PseudoU_synth_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50096">
        <property type="entry name" value="IQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01129">
        <property type="entry name" value="PSI_RLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PseudoU_synth_2" evidence="1">
        <location>
            <begin position="34"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="241" mass="27687" checksum="97FCB577B7DBBF3B" modified="2015-11-11" version="1">MLLSALYLKTMKKMKPVPYRHRPKGLTILYEDRDIIVVDKSAGLLTVKATYEKEKTAHHILTNYVRKGSFKSTKQLFVVHRLDRDTSGVLLFAKSAEAKENLKLQWKAVRKKYVAVVHGILIEKSGTITSYLTENDDYEVFSVQSSRKGELAKTRYKVLREAKRFSLLEIELLTGKKNQIRVHFAEKGHPLVGDDKYGKKDAPKSRLALHSQYITFRHPHSGKELTFEAEVPGFFKSFFDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXA3</accession>
    <name>A0A0M2UXA3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00563</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000078">
        <property type="protein sequence ID" value="KKO20708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20708">
        <property type="protein sequence ID" value="KKO20708"/>
        <property type="gene ID" value="BROFUL_00563"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.707"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013430">
        <property type="entry name" value="Toxin_antidote_HigA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36924">
        <property type="entry name" value="PTHR36924"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02607">
        <property type="entry name" value="antidote_HigA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="15"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="101" mass="11588" checksum="AB45A32805AB8574" modified="2015-11-11" version="1">MKKIPNIHPGEILEKEFLKEFHISAYRLAKETKIPPTRVSEIIKGKRRITADTALRLAKFFGTTPDFWLGLQMEYDLREEKATKAKEIGSIKSFKSLPVAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXF9</accession>
    <name>A0A0M2UXF9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Hydroxylamine oxidoreductase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">hao_3</name>
        <name evidence="2" type="ORF">BROFUL_00675</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20557.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20557">
        <property type="protein sequence ID" value="KKO20557"/>
        <property type="gene ID" value="BROFUL_00675"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036280">
        <property type="entry name" value="Multihaem_cyt_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48695">
        <property type="entry name" value="SSF48695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="40"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="67"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20557.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="558" mass="62437" checksum="8B43D91ED9DF4091" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXL1</accession>
    <name>A0A0M2UXL1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02087</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000209">
        <property type="protein sequence ID" value="KKO19209.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19209">
        <property type="protein sequence ID" value="KKO19209"/>
        <property type="gene ID" value="BROFUL_02087"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019270">
        <property type="entry name" value="DUF2283"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10049">
        <property type="entry name" value="DUF2283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19209.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="80" mass="9227" checksum="62B639C86F5BAFCA" modified="2015-11-11" version="1">MTGERLKKDIKMKITYDKDVDALYIEISRKKAIESDEVEKDVIVDYDENDNIVGIEVLNCVKKNKDKILPALKEIEKVSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXL4</accession>
    <name>A0A0M2UXL4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Lactamase_B domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00947</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000116">
        <property type="protein sequence ID" value="KKO20315.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20315">
        <property type="protein sequence ID" value="KKO20315"/>
        <property type="gene ID" value="BROFUL_00947"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1194"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12706">
        <property type="entry name" value="Lactamase_B_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="67"/>
            <end position="257"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20315.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="287" mass="32649" checksum="72333BE40A5D0EB2" modified="2015-11-11" version="1">MTEYRRKTTRTNSFRNLAQQQRKIQATTGAEKYMKVTFLGTGTSHGIPMIACSCKVCTSDNPKNKRMRTSVLVSTNGYNILIDATPELRLQCIKNKITKLDAVLITHPHADHIFGLDDLRRFNMIQRMDIPIYGTPKTLDTIRHTFSYVFTTHSETGGYKPRFSLKIINGDLTIEGIPIVPVKAHHGEGEVTGYRFDKFAYVTDVSDIPEESLEKLHDLDVLVLGALRYTPHIKHFSIEQALRVVRKLRPQKAYFTHMCHDIEHEEDGNKLPAGVEFAFDGLMIDLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXQ9</accession>
    <name>A0A0M2UXQ9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00394</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000052">
        <property type="protein sequence ID" value="KKO20878.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20878">
        <property type="protein sequence ID" value="KKO20878"/>
        <property type="gene ID" value="BROFUL_00394"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20878.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="136" mass="14618" checksum="9FB4ECBB72669D98" modified="2015-11-11" version="1">MAEKHSKEVFVVCFLGDAMQSLPEVWDKGIEIDVLGGYTNGIVSVVSSPSFCLADELPIGSLVTSALKAFPLDKGFEQVNGMSVFVYEIIPDAASNESKNVACQMGNAHPGKNKKTRVIGDEVERVFPGQNIPADE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXV0</accession>
    <name>A0A0M2UXV0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">CRISPR-associated endoribonuclease Cas2</fullName>
            <ecNumber evidence="9">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">cas2</name>
        <name evidence="11" type="ORF">BROFUL_02008</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 9">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homodimer, forms a heterotetramer with a Cas1 homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 9 10">Belongs to the CRISPR-associated endoribonuclease Cas2 protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="9"/>
    <dbReference type="EMBL" id="LAQJ01000202">
        <property type="protein sequence ID" value="KKO19294.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19294">
        <property type="protein sequence ID" value="KKO19294"/>
        <property type="gene ID" value="BROFUL_02008"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2499"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004521">
        <property type="term" value="F:endoribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043571">
        <property type="term" value="P:maintenance of CRISPR repeat elements"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd09725">
        <property type="entry name" value="Cas2_I_II_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01471">
        <property type="entry name" value="Cas2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021127">
        <property type="entry name" value="CRISPR_associated_Cas2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019199">
        <property type="entry name" value="Virulence_VapD/CRISPR_Cas2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34405">
        <property type="entry name" value="PTHR34405"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09827">
        <property type="entry name" value="CRISPR_Cas2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF032582">
        <property type="entry name" value="Cas2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01573">
        <property type="entry name" value="cas2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9 10" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="5 9 10" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6 9 10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7 9 10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4 9 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 9 10" id="KW-0540">Nuclease</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="9">
        <location>
            <position position="8"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009959"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR032582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO19294.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="95" mass="10947" checksum="1409CD134EA79879" modified="2015-11-11" version="1">MLVLISYDVASDDTGQRRLRRVARACKDYGQRVQYSVFECIVDPAQWTMLKARLISEIDPEKDSLRFYYLGANYKHRVEHVGAKPSVEQDGPLIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY14</accession>
    <name>A0A0M2UY14_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00283</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000033">
        <property type="protein sequence ID" value="KKO20983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20983">
        <property type="protein sequence ID" value="KKO20983"/>
        <property type="gene ID" value="BROFUL_00283"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="56" mass="6411" checksum="7F5EDDC20CFD8E55" modified="2015-11-11" version="1">MFVVEAKHLLISDLNVILISWTANASPLRMIANKVAEGLIYVSDRDGKYYLMRRVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY66</accession>
    <name>A0A0M2UY66_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase</fullName>
            <ecNumber evidence="2">3.5.1.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">pgaB</name>
        <name evidence="2" type="ORF">BROFUL_00772</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.-" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000098">
        <property type="protein sequence ID" value="KKO20505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20505">
        <property type="protein sequence ID" value="KKO20505"/>
        <property type="gene ID" value="BROFUL_00772"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.978"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016810">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011330">
        <property type="entry name" value="Glyco_hydro/deAcase_b/a-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002509">
        <property type="entry name" value="NODB_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01522">
        <property type="entry name" value="Polysacc_deac_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88713">
        <property type="entry name" value="SSF88713"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51677">
        <property type="entry name" value="NODB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NodB homology" evidence="1">
        <location>
            <begin position="47"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="223" mass="25466" checksum="A68FC4DE6DB72651" modified="2015-11-11" version="1">MPSAVRYRVTPDAFEEQIRYLHDNGYYSIRLKDWHTAMEKKRPLPGKAVMITFDDGYFDFLTYAWPILRRYGFHATVFLVADYVGRSDSWDNVYGEEIPLLGWSEIRQLRDMGVEFGSHSASHPYLTALSPEKIVREGARSRAILGRELGITIRAFAYPYGDADHVVQHLIGACGYVYGLSAKQDLSKFQDPLLALPRIEITGSDKLQDFIEKLNVRPTQVVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY88</accession>
    <name>A0A0M2UY88_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00209</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000026">
        <property type="protein sequence ID" value="KKO21053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21053">
        <property type="protein sequence ID" value="KKO21053"/>
        <property type="gene ID" value="BROFUL_00209"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.256"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013570">
        <property type="entry name" value="Tscrpt_reg_YsiA_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08359">
        <property type="entry name" value="TetR_C_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="8"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="31"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO21053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="200" mass="22903" checksum="4EB87B6FC65F9E39" modified="2015-11-11" version="1">MQIRKSTAIRRQQIVDIIRNIISSKGIEHVTISEIAEKIGTTKGAIYRHFKSKRDILSLLIDNVEETLMDALDNALMERDPLQNLKNILLAQLILAKNRRKTSFVVVMGAMQFSDPFIRKKILKLIQKYLRRIEKLILNAIGLGLIKKNIDPKMSAIVFMGLIQSAITVWSYKNFNFVPQKIHAHLWNVYCQGIGVSFDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYC6</accession>
    <name>A0A0M2UYC6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">HEPN domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01306</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000137">
        <property type="protein sequence ID" value="KKO19976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19976">
        <property type="protein sequence ID" value="KKO19976"/>
        <property type="gene ID" value="BROFUL_01306"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007842">
        <property type="entry name" value="HEPN_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05168">
        <property type="entry name" value="HEPN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HEPN" evidence="1">
        <location>
            <begin position="11"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="140" mass="15906" checksum="9D89E228F51414C2" modified="2015-11-11" version="1">MMPQADIAVIKEMLNKSHKKLKTALTTLEHEEYDDSVSRSYYAVFHAISAALLSKGLHFSTHAQTIGAFNRNLVKTGEIPVITKTIGKLFSERQIGDYDFQRCLDAVTAKEDLEEAEKIIDACETYLAKVYKVSKNYWKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYD0</accession>
    <name>A0A0M2UYD0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00704</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20585.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20585">
        <property type="protein sequence ID" value="KKO20585"/>
        <property type="gene ID" value="BROFUL_00704"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004089">
        <property type="term" value="F:carbonate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036874">
        <property type="entry name" value="Carbonic_anhydrase_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53056">
        <property type="entry name" value="SSF53056"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20585.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="189" mass="21096" checksum="6EB9D383EE5B11E9" modified="2015-11-11" version="1">MKKIGSVVSAVVVLFSIFPIGCMYNQSPLPDRLLENEQISLNVSHDASAISDCDTLLITCIDYRFAVANQDFANDTLGLRDNYDHISIPGSIYNLVNPETRSLLFSKFALSVRMHLIKRVVIVSHRDCGAYGGSVAFGSEIAEYETLTADLKTSRGLFLEKYPTLKVESFLESLEKEGDQTKVKFEKIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYD2</accession>
    <name>A0A0M2UYD2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">DNA polymerase IV</fullName>
            <shortName evidence="12">Pol IV</shortName>
            <ecNumber evidence="12">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="primary">dinB</name>
        <name evidence="14" type="ORF">BROFUL_01801</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11 12">
            <text>a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="12">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="12">Binds 2 magnesium ions per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="12">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="12">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 12">Belongs to the DNA polymerase type-Y family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="12"/>
    <dbReference type="EMBL" id="LAQJ01000188">
        <property type="protein sequence ID" value="KKO19489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19489">
        <property type="protein sequence ID" value="KKO19489"/>
        <property type="gene ID" value="BROFUL_01801"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2239"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006261">
        <property type="term" value="P:DNA-templated DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd03586">
        <property type="entry name" value="PolY_Pol_IV_kappa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01113">
        <property type="entry name" value="DNApol_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036775">
        <property type="entry name" value="DNA_pol_Y-fam_lit_finger_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017961">
        <property type="entry name" value="DNA_pol_Y-fam_little_finger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022880">
        <property type="entry name" value="DNApol_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024728">
        <property type="entry name" value="PolY_HhH_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001126">
        <property type="entry name" value="UmuC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00817">
        <property type="entry name" value="IMS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11799">
        <property type="entry name" value="IMS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11798">
        <property type="entry name" value="IMS_HHH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100879">
        <property type="entry name" value="SSF100879"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="SSF56672"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50173">
        <property type="entry name" value="UMUC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 12" id="KW-0227">DNA damage</keyword>
    <keyword evidence="10 12" id="KW-0234">DNA repair</keyword>
    <keyword evidence="5 12" id="KW-0235">DNA replication</keyword>
    <keyword evidence="12" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9 12" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="8 12" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 12" id="KW-0515">Mutator protein</keyword>
    <keyword evidence="4 12" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="UmuC" evidence="13">
        <location>
            <begin position="1"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="active site" evidence="12">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="97"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="site" description="Substrate discrimination" evidence="12">
        <location>
            <position position="5"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010945"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022457"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00024632"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KKO19489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="349" mass="39148" checksum="3A396BBE0C0AE8C8" modified="2015-11-11" version="1">MDAFFAAVEQKRNPDLTGKALVIGGSGDPTQRGVVSTASYEARKFGIHSAMPLRTAYKLCPHAIFLPVDYREYARISEKIKHILKRFCPLMQDVGIDEAFLDVSQIDKPPEEIAKEIKMTIRQETGLTCSIGIAPNKLLAKIASDLQKPDGLTMITEEDRENRIWPLPVRKLWGVGPKTEAALKEMGIETVGALASLSREKLIEKFGNSYGKYLYEASRGIDDSPLITHWEPKSTSREVTFQRDSNKWQEIARTLAELTREIATDMKRSGYKGRTVTVKIRFSDFETHTRAKTLGKPVNSADEIRTAAFDCLRRFELKKKVRLVGVRVGGLEKVHGAICHSKQIEEADA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYI1</accession>
    <name>A0A0M2UYI1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Deoxyribonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00389</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000051">
        <property type="protein sequence ID" value="KKO20882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20882">
        <property type="protein sequence ID" value="KKO20882"/>
        <property type="gene ID" value="BROFUL_00389"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.484"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009036">
        <property type="term" value="F:type II site-specific deoxyribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043091">
        <property type="entry name" value="Restr_endonucII_AvaI/BsoBI_hel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015277">
        <property type="entry name" value="Restrct_endonuc_II_AvaI/BsoBI"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09194">
        <property type="entry name" value="Endonuc-BsobI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="322" mass="35691" checksum="89F2BBD2E5B4B93C" modified="2015-11-11" version="1">MSRPSLPRLKSSKDLETTYEAVRAGFVKQALEKNRQATQYVEEARALKVAASTAKTPSDLLIIPDIQSALLTAAGVSEKANNHLLQRDKEEAIKGLIDNFLEPAGKKFVEELVFRFLLIRGDTLGGSMRNIGGILAQRKLTRSIISALKVAGKSYEWLHSETNAWVPMTESNAEIEIFVKGISWKSDSQSRTALFNLFVPIVGNNVDLCLFNRESKDFSNKKIARDILISPPSYIALGELKGGIDPAGADEHWKTARTHLNRIQDSFKKMGHKPNLFFIGAAIEAKMAVEIWNLLKKGILSNAANLTDDNQIASVSRWLCNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYJ0</accession>
    <name>A0A0M2UYJ0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Glutamate--tRNA ligase</fullName>
            <ecNumber evidence="9">6.1.1.17</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Glutamyl-tRNA synthetase</fullName>
            <shortName evidence="9">GluRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">gltX</name>
        <name evidence="13" type="ORF">BROFUL_01745</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>ATP + L-glutamate + tRNA(Glu) = AMP + diphosphate + L-glutamyl-tRNA(Glu)</text>
            <dbReference type="Rhea" id="RHEA:23540"/>
            <dbReference type="Rhea" id="RHEA-COMP:9663"/>
            <dbReference type="Rhea" id="RHEA-COMP:9680"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78520"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.17"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="9">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.17" evidence="9"/>
    <dbReference type="EMBL" id="LAQJ01000181">
        <property type="protein sequence ID" value="KKO19544.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19544">
        <property type="protein sequence ID" value="KKO19544"/>
        <property type="gene ID" value="BROFUL_01745"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2162"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004818">
        <property type="term" value="F:glutamate-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006424">
        <property type="term" value="P:glutamyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00808">
        <property type="entry name" value="GluRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.350">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00022">
        <property type="entry name" value="Glu_tRNA_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045462">
        <property type="entry name" value="aa-tRNA-synth_I_cd-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020751">
        <property type="entry name" value="aa-tRNA-synth_I_codon-bd_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008925">
        <property type="entry name" value="aa_tRNA-synth_I_cd-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004527">
        <property type="entry name" value="Glu-tRNA-ligase_bac/mito"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020752">
        <property type="entry name" value="Glu-tRNA-synth_I_codon-bd_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000924">
        <property type="entry name" value="Glu/Gln-tRNA-synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020058">
        <property type="entry name" value="Glu/Gln-tRNA-synth_Ib_cat-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033910">
        <property type="entry name" value="GluRS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19269">
        <property type="entry name" value="Anticodon_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00749">
        <property type="entry name" value="tRNA-synt_1c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00987">
        <property type="entry name" value="TRNASYNTHGLU"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48163">
        <property type="entry name" value="SSF48163"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00464">
        <property type="entry name" value="gltX_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9 10" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="6 9 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 9 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 9 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 9 10" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="tRNA-synt_1c" evidence="11">
        <location>
            <begin position="1"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="domain" description="Anticodon_2" evidence="12">
        <location>
            <begin position="330"/>
            <end position="476"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="9">
        <location>
            <begin position="8"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="9">
        <location>
            <begin position="248"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="251"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001818"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00022"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU363037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF19269"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO19544.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="485" mass="55468" checksum="962AACFD3D926147" modified="2015-11-11" version="1">MVRVRFAPSPTGLLHIGNARVAVFNWLFARRHNGAFLLRIEDTDLARSEKKYIDQLIEDLHWLGLTWQEGPDVGGPYGPYLQSERLHIYRDICQRFLQEGCAYRCYCTPAELEERRQIAKRTGKPPRYDNRCRNLSNEQRKALETSGLNCTVRFKVPEELLVFDDLIRGTCQFDMSLVGDFVIMRSDGTPSFHFAVAVDDILMKITHVIRGEDHLTNTPCHILLFHALGQKPPHFAHLSLTMGADRTLLSKRHGAFSLSEYHNMGYLPEALLNYMMLLGWAPKDKRDKFTASDITDTFEIGTMSKASSVFDQQKLNWMNGQYLREAEIERLVNLAIPYLQAAGLVSADDNAIDRAQLRLIVDAVRNNISCMSQIAQEANIFFKDVVISKQHIEFLSSEITQSILLSFYHELCKRNILSPDIFKDILKTVQKETKVHGKGLYLPVRVALTGREHGPELYGIANILGLDTCKKRIERFLLIRKQVTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYJ4</accession>
    <name>A0A0M2UYJ4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01219</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000133">
        <property type="protein sequence ID" value="KKO20056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20056">
        <property type="protein sequence ID" value="KKO20056"/>
        <property type="gene ID" value="BROFUL_01219"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031100">
        <property type="entry name" value="LOG_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03641">
        <property type="entry name" value="Lysine_decarbox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="148" mass="16305" checksum="7D2D46F6151A8C9D" modified="2015-11-11" version="1">MQAANEGAATSPECAKSVGIRVDLPFEQEVNAFVTQAFEHRTFFTRLHQFVLTSDAFVVAPGGIGTVLETMMIWQLLQVHHLENTPLILVGKMWPGLIEWARGAMLSAESPLANAEDMTIPRCAANADEAIALIREHHAAWLSKKEKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYJ5</accession>
    <name>A0A0M2UYJ5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00114</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000015">
        <property type="protein sequence ID" value="KKO21153.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21153">
        <property type="protein sequence ID" value="KKO21153"/>
        <property type="gene ID" value="BROFUL_00114"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21153.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="57" mass="6182" checksum="949985E5AEBCFFB2" modified="2015-11-11" version="1">MGVAPCTNGITVEFGCQFRVELTDSSLAGYFKGILQVTAGKGERVMRTINMRVNVSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYK8</accession>
    <name>A0A0M2UYK8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative heme protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01216</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000132">
        <property type="protein sequence ID" value="KKO20066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20066">
        <property type="protein sequence ID" value="KKO20066"/>
        <property type="gene ID" value="BROFUL_01216"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023155">
        <property type="entry name" value="Cyt_c-552/4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036280">
        <property type="entry name" value="Multihaem_cyt_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13435">
        <property type="entry name" value="Cytochrome_C554"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48695">
        <property type="entry name" value="SSF48695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644172" evidence="1">
        <location>
            <begin position="20"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome_C554" evidence="2">
        <location>
            <begin position="46"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="327" mass="36621" checksum="5863C278FC56DC96" modified="2015-11-11" version="1">MFYKNVKFLKICISFFSLSACLLPVSCTLYPELVETGPKSPQSERCGDCHQDIYREWKDSPHASSFINAAFREETNEYQFTFCIGCHAPETIFTDEKIKPRKVNESEGVNCTSCHLNDCKLSGPTPAHGPHPIAGENPFFRSSELCGKCHVGTYAAWKESDMAEGKKTCQDCHMPAITRKLIQDDPWQKIYPKREGKQHLFSSLAFFQDNENPLPLSFIHVTRSAGKVEGILELENAGIPHSVPTGDYGYREVVVAVALLDNAGRVIESKRESLFVELKTALPYKGKKSIPFCFAGGENVSMIKATVVRTSFQKDKDFLLAETTYPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYL8</accession>
    <name>A0A0M2UYL8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ribonuclease P protein component</fullName>
            <shortName evidence="6">RNase P protein</shortName>
            <shortName evidence="6">RNaseP protein</shortName>
            <ecNumber evidence="6">3.1.26.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Protein C5</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rnpA</name>
        <name evidence="7" type="ORF">BROFUL_00085</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 6">RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>Endonucleolytic cleavage of RNA, removing 5'-extranucleotides from tRNA precursor.</text>
            <dbReference type="EC" id="3.1.26.5"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="6">Consists of a catalytic RNA component (M1 or rnpB) and a protein subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the RnpA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.26.5" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000009">
        <property type="protein sequence ID" value="KKO21178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21178">
        <property type="protein sequence ID" value="KKO21178"/>
        <property type="gene ID" value="BROFUL_00085"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.106"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004526">
        <property type="term" value="F:ribonuclease P activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001682">
        <property type="term" value="P:tRNA 5'-leader removal"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00227">
        <property type="entry name" value="RNase_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000100">
        <property type="entry name" value="RNase_P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020539">
        <property type="entry name" value="RNase_P_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33992">
        <property type="entry name" value="PTHR33992"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00825">
        <property type="entry name" value="Ribonuclease_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00188">
        <property type="entry name" value="rnpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00648">
        <property type="entry name" value="RIBONUCLEASE_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 6" id="KW-0540">Nuclease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 6" id="KW-0819">tRNA processing</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002663"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO21178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="136" mass="15962" checksum="AA5A60005630532F" modified="2015-11-11" version="1">MVFVVFVVELFWLRLCCLMNFRFTKAERLTLKKEFERVFQDGKVLKDAKVVLYVMANSLPHSRLGLVVSKKVGNAVRRNRAKRLLREVYRLNKHVLTMHVDMIAIPRHPFSSDLKRSDVEDGFKKLLLKINEAFCP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYM7</accession>
    <name>A0A0M2UYM7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Z1 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00070</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000008">
        <property type="protein sequence ID" value="KKO21188.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21188">
        <property type="protein sequence ID" value="KKO21188"/>
        <property type="gene ID" value="BROFUL_00070"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.87"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018310">
        <property type="entry name" value="Put_endonuclease_Z1-dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10593">
        <property type="entry name" value="Z1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Z1" evidence="1">
        <location>
            <begin position="448"/>
            <end position="695"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21188.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="985" mass="112105" checksum="DB76A34A15D94488" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYS0</accession>
    <name>A0A0M2UYS0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Y1_Tnp domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00519</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000071">
        <property type="protein sequence ID" value="KKO20760.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20760">
        <property type="protein sequence ID" value="KKO20760"/>
        <property type="gene ID" value="BROFUL_00519"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1290">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002686">
        <property type="entry name" value="Transposase_17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036515">
        <property type="entry name" value="Transposase_17_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM01321">
        <property type="entry name" value="Y1_Tnp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143422">
        <property type="entry name" value="SSF143422"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Y1_Tnp" evidence="1">
        <location>
            <begin position="10"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20760.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="167" mass="20253" checksum="59CB8F6616A81598" modified="2015-11-11" version="1">MPSIRINKELNQRIYFLTFTVKRWYYLLDRHNRWDILLDSLRYCQKNKGLKIYHWVFMLNHIHLIVKNDDMIGFVRDFKTFTSKALKKNILATEPKILKLFEENKNYQFWQKTNMPELIAGEEFYREKAKYVEQNPVRKGYVRSASYWVYSSANSDECLLDLDSVYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYT3</accession>
    <name>A0A0M2UYT3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative 3-oxoacyl-(Acyl-carrier-protein) synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00290</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000034">
        <property type="protein sequence ID" value="KKO20977.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20977">
        <property type="protein sequence ID" value="KKO20977"/>
        <property type="gene ID" value="BROFUL_00290"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.352"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00834">
        <property type="entry name" value="KAS_I_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000794">
        <property type="entry name" value="Beta-ketoacyl_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014031">
        <property type="entry name" value="Ketoacyl_synth_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014030">
        <property type="entry name" value="Ketoacyl_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020841">
        <property type="entry name" value="PKS_Beta-ketoAc_synthase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11712">
        <property type="entry name" value="PTHR11712"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00109">
        <property type="entry name" value="ketoacyl-synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02801">
        <property type="entry name" value="Ketoacyl-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00825">
        <property type="entry name" value="PKS_KS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PKS_KS" evidence="3">
        <location>
            <begin position="5"/>
            <end position="409"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20977.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="410" mass="44186" checksum="657486979A1FECE4" modified="2015-11-11" version="1">MKKRVVITGLGVVSPLGCGKEAFWNSLIEGKSGITPISSLDVSPYKCKLGGEVRDLKPEVYLGSKGLKYLNKGTRFLGSASKMALDDANLPQDGSLSDQMGIVIGSSLGNFSETTDYFYEIIRNNPSELSPMLSYDVALNSSINYVSVIFKIKGLARTISAGFTSSADAVGDAFKMIRRGMAKVIVAGGVEQISIDLYLIFYLRGLLSGLDGTREASLPFDKERNGFVMAEGSYVIILEELQHALDRGAHVYAEVKGFGSTFVGGKNHPTGIRVRRAERAMREALEDAGVKKEDVGLISTNANGCKVQDAVEAKAIRSLFDTGSSQIPISAIKSNIGESYGTAGAAQLISSVMSINTGLIPPIINHRDKDPEINLNLILEKPIKKEIRNAALNTRDYEGNNSCLVISRMD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYT7</accession>
    <name>A0A0M2UYT7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">dTDP-glucose 4,6-dehydratase</fullName>
            <ecNumber evidence="2">4.2.1.46</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">rmlB</name>
        <name evidence="2" type="ORF">BROFUL_01151</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.46" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000124">
        <property type="protein sequence ID" value="KKO20126.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20126">
        <property type="protein sequence ID" value="KKO20126"/>
        <property type="gene ID" value="BROFUL_01151"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1423"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008460">
        <property type="term" value="F:dTDP-glucose 4,6-dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016040">
        <property type="entry name" value="NAD(P)-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16363">
        <property type="entry name" value="GDP_Man_Dehyd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD(P)-bd_dom" evidence="1">
        <location>
            <begin position="8"/>
            <end position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF16363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20126.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="339" mass="37408" checksum="F086A51BBBFFEA50" modified="2015-11-11" version="1">MNIANHYLITGGCGFIGTSLIARLRGENPKAKIRVLDNLSVGTKDDLAEVCNFVELSTSRFNSQHSSNIVDPSDYPEVELIIGDVKDYNTCSMCCRDIDCIVHLAANTGVGTSVENPRRDMEANVIGTFNMLEAARQNSVGKFIFASSGAPVGEVDPPIHEEKAPRPVSPYGASKLAGEGYCSVYYRTFGIKTISLRFGNVYGPLSKHKNSVVAKFIKQALKGETLEIYGDGKQTRDFIYIDDLVMAIMLASMAETGGEVFQIATYKETTVNEIARVVKELVERKTGKKVNIVFGNHRPGDVKRNFSDISKARKILGFEPRYDLMTGLRKTFESFFQNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYW4</accession>
    <name>A0A0M2UYW4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative epimerase/dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01120</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20161.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20161">
        <property type="protein sequence ID" value="KKO20161"/>
        <property type="gene ID" value="BROFUL_01120"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Epimerase" evidence="1">
        <location>
            <begin position="4"/>
            <end position="235"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20161.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="300" mass="33164" checksum="86D2DD001DD3A959" modified="2015-11-11" version="1">MKVAITGLTGFLGHYVAKRLFAKEIEIVSLARSVSNTLHLKDYEKKIAFIRGDMTDKETLRKFLHGADVVIHMAYERNGASFHEAANRDLKRFVEANLLGSIELLDASRRAGIKQCIFISSCAVYGHIFPGIKLDELHPLLPDSNYGAYKASVEAFCHSYFMSKAFDVTIFRPVGIYGINPHLAHSAWYNIAKDIRHGINVEVSGGGKVVHVEDVAQAIDLAIGNKEAAGKVYNLVDFYVDNISVARMVRDICDSGSHVSGTPRQPIHTIENAQSRAFGVSYTGMEGLKGYLRELIKSMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYW7</accession>
    <name>A0A0M2UYW7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 7 8">2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase</fullName>
            <shortName evidence="7">MECDP-synthase</shortName>
            <shortName evidence="7">MECPP-synthase</shortName>
            <shortName evidence="7">MECPS</shortName>
            <ecNumber evidence="3 7 8">4.6.1.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">ispF</name>
        <name evidence="10" type="ORF">BROFUL_01125</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7 8">
            <text>4-CDP-2-C-methyl-D-erythritol 2-phosphate = 2-C-methyl-D-erythritol 2,4-cyclic diphosphate + CMP</text>
            <dbReference type="Rhea" id="RHEA:23864"/>
            <dbReference type="ChEBI" id="CHEBI:57919"/>
            <dbReference type="ChEBI" id="CHEBI:58483"/>
            <dbReference type="ChEBI" id="CHEBI:60377"/>
            <dbReference type="EC" id="4.6.1.12"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
        <text evidence="7">Binds 1 divalent metal cation per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 4/6.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homotrimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7 8">Belongs to the IspF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.6.1.12" evidence="3 7 8"/>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20166.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20166">
        <property type="protein sequence ID" value="KKO20166"/>
        <property type="gene ID" value="BROFUL_01125"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1395"/>
    <dbReference type="UniPathway" id="UPA00056">
        <property type="reaction ID" value="UER00095"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008685">
        <property type="term" value="F:2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019288">
        <property type="term" value="P:isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00554">
        <property type="entry name" value="MECDP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00107">
        <property type="entry name" value="IspF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003526">
        <property type="entry name" value="MECDP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020555">
        <property type="entry name" value="MECDP_synthase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036571">
        <property type="entry name" value="MECDP_synthase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43181">
        <property type="entry name" value="PTHR43181"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02542">
        <property type="entry name" value="YgbB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69765">
        <property type="entry name" value="SSF69765"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00151">
        <property type="entry name" value="ispF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01350">
        <property type="entry name" value="ISPF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7 8" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="6 7 8" id="KW-0456">Lyase</keyword>
    <keyword evidence="4 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YgbB" evidence="9">
        <location>
            <begin position="1"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="region of interest" description="4-CDP-2-C-methyl-D-erythritol 2-phosphate binding" evidence="7">
        <location>
            <begin position="8"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="region of interest" description="4-CDP-2-C-methyl-D-erythritol 2-phosphate binding" evidence="7">
        <location>
            <begin position="34"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="region of interest" description="4-CDP-2-C-methyl-D-erythritol 2-phosphate binding" evidence="7">
        <location>
            <begin position="56"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="region of interest" description="4-CDP-2-C-methyl-D-erythritol 2-phosphate binding" evidence="7">
        <location>
            <begin position="61"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="region of interest" description="4-CDP-2-C-methyl-D-erythritol 2-phosphate binding" evidence="7">
        <location>
            <begin position="132"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="8"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="10"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="42"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="142"/>
        </location>
        <ligand>
            <name>4-CDP-2-C-methyl-D-erythritol 2-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57919"/>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="7">
        <location>
            <position position="34"/>
        </location>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="7">
        <location>
            <position position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000200"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004709"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012579"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004395"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO20166.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="158" mass="17368" checksum="3407F7B435E7F86C" modified="2015-11-11" version="1">MRFGIGYDIHKLVENRRLVLGGVEFDYHRGLLGHSDADVVLHAVCDALLGAAALGDIGEHFPDTDQKWKGVSSKVFLVKVADLLKERQYKVNNVDVMILAQKPKLGQKKLEMKKNIAEWLCVDAGRVNIKATTMEGIDAIGRGEAIAAQAIASLCEER</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ86</accession>
    <name>A0A0M2UZ86_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01511</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000155">
        <property type="protein sequence ID" value="KKO19784.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19784">
        <property type="protein sequence ID" value="KKO19784"/>
        <property type="gene ID" value="BROFUL_01511"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="19"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19784.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="46" mass="5238" checksum="4526CA63A1F1DCC3" modified="2015-11-11" version="1">MQQLYDIAICLSIGLKGNANKKEGRQNVGDRKRAEGHTSKIRINRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZB7</accession>
    <name>A0A0M2UZB7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Phosphoesterase</fullName>
            <ecNumber evidence="3">3.1.4.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00118</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the metallophosphoesterase superfamily. YfcE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.4.-" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000015">
        <property type="protein sequence ID" value="KKO21157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21157">
        <property type="protein sequence ID" value="KKO21157"/>
        <property type="gene ID" value="BROFUL_00118"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0110165">
        <property type="term" value="C:cellular anatomical entity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00841">
        <property type="entry name" value="MPP_YfcE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024654">
        <property type="entry name" value="Calcineurin-like_PHP_lpxH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041802">
        <property type="entry name" value="MPP_YfcE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000979">
        <property type="entry name" value="Phosphodiesterase_MJ0936/Vps29"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12850">
        <property type="entry name" value="Metallophos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00040">
        <property type="entry name" value="yfcE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metallophos_2" evidence="4">
        <location>
            <begin position="1"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008950"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU362039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF12850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO21157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="167" mass="18415" checksum="50499B56CD00F9E1" modified="2015-11-11" version="1">MKVGILADTHDNIHAIKAAVSFFNTQDLKYVIHAGDYVAPFSLKELMNVRAKFFGVFGNNDGERMGLLAVCKNLHEPPYDLILDGKHIIVTHMLESLSKRSIMNTDIIIYAHTHMPEIKPGIPLYLNPGECGGWLNGKNTVAILDLQAIQADIIDLSAIPPIKADRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZG0</accession>
    <name>A0A0M2UZG0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01392</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000145">
        <property type="protein sequence ID" value="KKO19879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19879">
        <property type="protein sequence ID" value="KKO19879"/>
        <property type="gene ID" value="BROFUL_01392"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="110" mass="12237" checksum="FB1CF2ECE905238F" modified="2015-11-11" version="1">MRSKALFVLSMLPCLLITVIALLVTESLRKDEHTRTTVHDFQHMVHGVGLGATTKPAWCYINFDPRVDPRCSCIEWPIPGGYCYCPDHTGTVSFIAGNMEMGAAIEIIKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZK2</accession>
    <name>A0A0M2UZK2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00006</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000002">
        <property type="protein sequence ID" value="KKO21262.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21262">
        <property type="protein sequence ID" value="KKO21262"/>
        <property type="gene ID" value="BROFUL_00006"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21262.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="30" mass="3130" checksum="CFB32964F054CBEF" modified="2015-11-11" version="1" fragment="single">GEIASEKALAMTATMHFDGTLHVVIASEAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZR8</accession>
    <name>A0A0M2UZR8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00822</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000103">
        <property type="protein sequence ID" value="KKO20466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20466">
        <property type="protein sequence ID" value="KKO20466"/>
        <property type="gene ID" value="BROFUL_00822"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038078">
        <property type="entry name" value="PhoU-like_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="209" mass="23569" checksum="6F545511AE746921" modified="2015-11-11" version="1">MSFPHISEDLKSVSVRIGGMCFTAEAVLRLCIDGFIGHKAELIGGAQERTVSLNEEGNQLRKLLRDKATERTGNKEQIKYLLATLSSVRLALNGLDSLSRHVKFKIDEKIILSDKGFDEIRYLFHASLDILKSAGDTIANRKESFMKYVMDKCANLEILARQYAERHEERLITGICLPDASPVYVCIVDSVLTVVWHIKNAVTRLFGKW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V042</accession>
    <name>A0A0M2V042_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Histidine kinase</fullName>
            <ecNumber evidence="3">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_00064</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000007">
        <property type="protein sequence ID" value="KKO21225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21225">
        <property type="protein sequence ID" value="KKO21225"/>
        <property type="gene ID" value="BROFUL_00064"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004673">
        <property type="term" value="F:protein histidine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033479">
        <property type="entry name" value="dCache_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001610">
        <property type="entry name" value="PAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029151">
        <property type="entry name" value="Sensor-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02743">
        <property type="entry name" value="dCache_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13426">
        <property type="entry name" value="PAS_9"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00086">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103190">
        <property type="entry name" value="SSF103190"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="312"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="10">
        <location>
            <begin position="334"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="9">
        <location>
            <begin position="465"/>
            <end position="517"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO21225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="640" mass="72332" checksum="B2419C9DA7625718" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0G3</accession>
    <name>A0A0M2V0G3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00599</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000083">
        <property type="protein sequence ID" value="KKO20671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20671">
        <property type="protein sequence ID" value="KKO20671"/>
        <property type="gene ID" value="BROFUL_00599"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3910.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019903">
        <property type="entry name" value="RIC_family"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038062">
        <property type="entry name" value="ScdA-like_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04405">
        <property type="entry name" value="ScdA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140683">
        <property type="entry name" value="SSF140683"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="83" mass="9140" checksum="CDF5EF03CD781D04" modified="2015-11-11" version="1">MVGLKKETYFEGKIWEEMKMITKDMVINDVIRKYPKTVTVFSNFKVDACCGGGFSIEKTVATSGIDMNALLAALNKVVQAGSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0U1</accession>
    <name>A0A0M2V0U1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Probable transcriptional regulatory protein BROFUL_00911</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00911</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the TACO1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000110">
        <property type="protein sequence ID" value="KKO20354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20354">
        <property type="protein sequence ID" value="KKO20354"/>
        <property type="gene ID" value="BROFUL_00911"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.980">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00693">
        <property type="entry name" value="Transcrip_reg_TACO1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017856">
        <property type="entry name" value="Integrase-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002876">
        <property type="entry name" value="Transcrip_reg_TACO1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026564">
        <property type="entry name" value="Transcrip_reg_TACO1-like_dom3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029072">
        <property type="entry name" value="YebC-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12532">
        <property type="entry name" value="PTHR12532"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01709">
        <property type="entry name" value="Transcrip_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75625">
        <property type="entry name" value="SSF75625"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01033">
        <property type="entry name" value="TIGR01033"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 4" id="KW-0805">Transcription regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00693"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="251" mass="27626" checksum="1F82F44D0EC4D35B" modified="2015-11-11" version="1">MAGHSHWASIKHKKGAADAKKGKVFSKVTRMITVAARRGGGDPDMNPKLHLAISKGRAVNMPKENIERAIQKGTGGSGGAELFECMYEGYGPHGIALMVEILTDNKNRTAPEIRKIFERFGGNLGESGCVSWMFEKKGLIIVNSNQLNEDEFMMLVLDAGAEDLQRVGEIFQVICPQANLDTVKKAIESNNIKVETAELSWIPKNNIDLDETTGRKVLGIMDALEDHDDVQNVYSNFNLPQTLLDEIQSAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0W0</accession>
    <name>A0A0M2V0W0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Transcription termination/antitermination protein NusA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">nusA</name>
        <name evidence="10" type="ORF">BROFUL_00916</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Participates in both transcription termination and antitermination.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Monomer. Binds directly to the core enzyme of the DNA-dependent RNA polymerase and to nascent RNA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the NusA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000110">
        <property type="protein sequence ID" value="KKO20359.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20359">
        <property type="protein sequence ID" value="KKO20359"/>
        <property type="gene ID" value="BROFUL_00916"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1155"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006353">
        <property type="term" value="P:DNA-templated transcription, termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031564">
        <property type="term" value="P:transcription antitermination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1480.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00945_B">
        <property type="entry name" value="NusA_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004087">
        <property type="entry name" value="KH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025249">
        <property type="entry name" value="KH_dom_NusA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009019">
        <property type="entry name" value="KH_sf_prok-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030842">
        <property type="entry name" value="NusA_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036555">
        <property type="entry name" value="NusA_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022967">
        <property type="entry name" value="S1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003029">
        <property type="entry name" value="S1_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013735">
        <property type="entry name" value="TF_NusA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010213">
        <property type="entry name" value="Tscrpt_termination_fac_NusA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22648">
        <property type="entry name" value="PTHR22648"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13184">
        <property type="entry name" value="KH_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08529">
        <property type="entry name" value="NusA_N"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00322">
        <property type="entry name" value="KH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54814">
        <property type="entry name" value="SSF54814"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69705">
        <property type="entry name" value="SSF69705"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01953">
        <property type="entry name" value="NusA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50126">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="6 7" id="KW-0804">Transcription</keyword>
    <keyword evidence="3 7" id="KW-0889">Transcription antitermination</keyword>
    <keyword evidence="5 7" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="1 7" id="KW-0806">Transcription termination</keyword>
    <feature type="domain" description="S1 motif" evidence="9">
        <location>
            <begin position="104"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="314"/>
            <end position="358"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00945"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO20359.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="358" mass="39517" checksum="0382AFFC36A91ABF" modified="2015-11-11" version="1">MDKESLLRLVDSLHRDKEIAKEVVFQGIEAALTTAARKHFKAHEMVSIQIDRTTGEILAKEGDRTIDPSELGRITAQTAKQVIIQKIREAERDVIYDDFVSRKGSIVSGTVQRFEGSAIIVNLGKTEGVLQRSEQIDGEHYNMNERVRAIVFDVKKIGSRVRILLSRTHPDFVRRLFELEVPEIAENTIEIKALAREPGHRTKISVASSDANVDCVGACVGVRGSRIKNIVDELNGEKIDIIRWSDEPEVLLPNALKPAEVSGIIVSADNQVATIVVPNDQLSLAIGKRGQNVRLASRLTSWDIDIITESEFEERQKTSADGLTEVVESSKKPADNVASKTAEAAEQLQPGGEKEEVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V155</accession>
    <name>A0A0M2V155_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00829</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000104">
        <property type="protein sequence ID" value="KKO20444.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20444">
        <property type="protein sequence ID" value="KKO20444"/>
        <property type="gene ID" value="BROFUL_00829"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1049"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20444.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="485" mass="54201" checksum="6A1AC06D85F72C47" modified="2015-11-11" version="1">MTDIANRKAKDGSRNAIGDAYHPECLDFLENGEYFKVEKVLEFCPNEQRVIGIEELLKPIQLAIRGELKKTGETEQETVLLSHEDGVWAWHFKDDDGASKGLMGDEIRPMSFFTIPFKVQNRTTRGIWSKLVCVIKFTKDWFQEGSSEAIKKMLQAFEEKVIKEGFKLIEHSKGFVEGLSKTDPVTHWDGVRDLVKGNKKALLFIHGTGSSLEGGYEDVPPAILETLKDTYPVILGYDHFTLSKTPLENAREMLMKLKESGISDVGLKFDVITHSRGGLVLRSLVELTDEGYRYVDRVTMVACPAGGTSLADTSKWDSLSKMVNLLTNIFFFAGGAPMKIFFSLVGGLVKFLSQKIKDQSIPGIWAMDPHSDFINTLNKKGTDVKGVVTYDTIGSEFEPSGISAGGVRDDIIDGIADAFFGAPNDLVVDTEKMIVDWPKGIQGKKTLSHAFQPADHVYHLNYFKQAETYRKISEFFEVKRNALDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1Y5</accession>
    <name>A0A0M2V1Y5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">3-isopropylmalate dehydratase small subunit</fullName>
            <ecNumber evidence="3">4.2.1.33</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Alpha-IPM isomerase</fullName>
            <shortName evidence="3">IPMI</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Isopropylmalate isomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">leuD</name>
        <name evidence="5" type="ORF">BROFUL_00142</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>(2R,3S)-3-isopropylmalate = (2S)-2-isopropylmalate</text>
            <dbReference type="Rhea" id="RHEA:32287"/>
            <dbReference type="ChEBI" id="CHEBI:1178"/>
            <dbReference type="ChEBI" id="CHEBI:35121"/>
            <dbReference type="EC" id="4.2.1.33"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 2/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Heterodimer of LeuC and LeuD.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the LeuD family. LeuD type 2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.33" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000016">
        <property type="protein sequence ID" value="KKO21141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21141">
        <property type="protein sequence ID" value="KKO21141"/>
        <property type="gene ID" value="BROFUL_00142"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.178"/>
    <dbReference type="UniPathway" id="UPA00048">
        <property type="reaction ID" value="UER00071"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003861">
        <property type="term" value="F:3-isopropylmalate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009098">
        <property type="term" value="P:leucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01577">
        <property type="entry name" value="IPMI_Swivel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.19.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01032">
        <property type="entry name" value="LeuD_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015928">
        <property type="entry name" value="Aconitase/3IPM_dehydase_swvl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000573">
        <property type="entry name" value="AconitaseA/IPMdHydase_ssu_swvl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033940">
        <property type="entry name" value="IPMI_Swivel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011824">
        <property type="entry name" value="LeuD/DmdB_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011827">
        <property type="entry name" value="LeuD_type2/HacB/DmdB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00694">
        <property type="entry name" value="Aconitase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02084">
        <property type="entry name" value="leud"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02087">
        <property type="entry name" value="LEUD_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="3" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="3" id="KW-0432">Leucine biosynthesis</keyword>
    <keyword evidence="2 3" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aconitase_C" evidence="4">
        <location>
            <begin position="21"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009869"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO21141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="163" mass="18141" checksum="4DBCC940DA1C254A" modified="2015-11-11" version="1">MKGTCWKFGNNINTDEIIPARYLNTTDTKELAAHCMEDADPDFMKKINVGDIIVAGDNFGCGSSREHAPIAIKAARISCVIAKSFARIFFRNAINIGLPIFECPEAAEQIREGDEIEVNLNSGEILNNTSKKRFKFEPFPQEMQEIIQAGGLMNFVKKKKAVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V222</accession>
    <name>A0A0M2V222_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Twitching motility protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00095</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GSP E family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000010">
        <property type="protein sequence ID" value="KKO21176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21176">
        <property type="protein sequence ID" value="KKO21176"/>
        <property type="gene ID" value="BROFUL_00095"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.121"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01131">
        <property type="entry name" value="PilT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006321">
        <property type="entry name" value="PilT/PilU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001482">
        <property type="entry name" value="T2SS/T4SS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00437">
        <property type="entry name" value="T2SSE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01420">
        <property type="entry name" value="pilT_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00662">
        <property type="entry name" value="T2SP_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="T2SP_E" evidence="2">
        <location>
            <begin position="193"/>
            <end position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS00662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO21176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="368" mass="41803" checksum="F40E39F7EA20EEEC" modified="2015-11-11" version="1">MEMKELLQEMVRLDASDIYITVDLPAIFRREGANTPCGTKNLTDEDVRILAESVMNDKQRKDFYDKMEMNLALYYPELGRFRVNIFFQRRYIGMVIRQIKINIKTIDDLQLPPILKDIIMTKRGLVLVVGATGSGKSTTLAAMIDYRNTNSSGHIITVEDPIEFVHPHKKSVITQREVGMDTLSFADALKNTLRQAPDVILVGEIRDTETMESAITFAETGHLCLGTLHANNANQAIERIINFFPAERHEQIYLLLSLNLRSIISQRLVPSKDGKRIASLEILLDTPRIKDLILKKEVELLKETMARGTQDGMLTFDQSLFQFYKEDKISYENTLAYADSANDLRIRIKTAGLGEGKEDKAVSFRLKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2J7</accession>
    <name>A0A0M2V2J7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00343</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000043">
        <property type="protein sequence ID" value="KKO20929.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20929">
        <property type="protein sequence ID" value="KKO20929"/>
        <property type="gene ID" value="BROFUL_00343"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20929.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="161" mass="18298" checksum="3987B3EAB0E26265" modified="2015-11-11" version="1">MISTFTFSVFRVTLRAREDLHLPGYKGSAIRGSFGHTFRKVVCLFGKRDCSGCDISRQCVYAYLFETIADKNDPFLRNRDKAAHPYIIRPPLDEKERYETGEDMVFDLILVGRAVDYLPILRTPSSLWGNRVWAGAGANLPSGNRCPGVKREPSCRLPIRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V3F4</accession>
    <name>A0A0M2V3F4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Selenide, water dikinase</fullName>
            <ecNumber evidence="5">2.7.9.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Selenium donor protein</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">Selenophosphate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">selD</name>
        <name evidence="8" type="ORF">BROFUL_00076</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Synthesizes selenophosphate from selenide and ATP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>ATP + H2O + hydrogenselenide = AMP + 2 H(+) + phosphate + selenophosphate</text>
            <dbReference type="Rhea" id="RHEA:18737"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16144"/>
            <dbReference type="ChEBI" id="CHEBI:29317"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.7.9.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="5">Binds 1 Mg(2+) ion per monomer.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the selenophosphate synthase 1 family. Class I subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.9.3" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000008">
        <property type="protein sequence ID" value="KKO21194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21194">
        <property type="protein sequence ID" value="KKO21194"/>
        <property type="gene ID" value="BROFUL_00076"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.94"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004756">
        <property type="term" value="F:selenide, water dikinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016260">
        <property type="term" value="P:selenocysteine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02195">
        <property type="entry name" value="SelD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.650.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00625">
        <property type="entry name" value="SelD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010918">
        <property type="entry name" value="PurM-like_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036676">
        <property type="entry name" value="PurM-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016188">
        <property type="entry name" value="PurM-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036921">
        <property type="entry name" value="PurM-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023061">
        <property type="entry name" value="SelD_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004536">
        <property type="entry name" value="SPS/SelD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10256">
        <property type="entry name" value="PTHR10256"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00586">
        <property type="entry name" value="AIRS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02769">
        <property type="entry name" value="AIRS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036407">
        <property type="entry name" value="Selenphspht_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55326">
        <property type="entry name" value="SSF55326"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56042">
        <property type="entry name" value="SSF56042"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00476">
        <property type="entry name" value="selD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0711">Selenium</keyword>
    <keyword evidence="2 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="AIRS" evidence="6">
        <location>
            <begin position="64"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="domain" description="AIRS_C" evidence="7">
        <location>
            <begin position="174"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="26"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="56"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="73"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="144"/>
            <end position="146"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="232"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="site" description="Important for catalytic activity" evidence="5">
        <location>
            <position position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00625"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO21194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="355" mass="38259" checksum="C67F32E94D48063B" modified="2015-11-11" version="1">MKGGDTCGSGKETIGRLRHLRRVSSKIPVEDMAYIVRHLPEYPNDRVLVGPKTFADAGIYKINDDLALVGTLDFFTPVVNNPYDYGQIAAANALSDVYAMGGKPLTAMNILCYPLKSLDKDVLVEILKGGADKINEAGATVVGGHTLQDNEIKYGLSVTGIIHPGKIVTNAGARPGDALVLTKPLGTGLIIAAIKANKVFDEDVSVVTRSMTLLNKTSSETMLEVGANSCTDITGFGLMGHAFEMAEASRATLSFSAERIPIFDGCERYVRMGLIPGVSKLSKKYLKNDIRIDSAVREELIDVLFDAQTSGGLLISLQREKAETLCKKLQEKGVMTVGIVGEVWERRDVSIVVLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UP41</accession>
    <name>A0A0M2UP41_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Peptide chain release factor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_03414</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the prokaryotic/mitochondrial release factor family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000312">
        <property type="protein sequence ID" value="KKO17903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17903">
        <property type="protein sequence ID" value="KKO17903"/>
        <property type="gene ID" value="BROFUL_03414"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4192"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016149">
        <property type="term" value="F:translation release factor activity, codon specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005139">
        <property type="entry name" value="PCRF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000352">
        <property type="entry name" value="Pep_chain_release_fac_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045853">
        <property type="entry name" value="Pep_chain_release_fac_I_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004374">
        <property type="entry name" value="PrfB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03462">
        <property type="entry name" value="PCRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00472">
        <property type="entry name" value="RF-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00937">
        <property type="entry name" value="PCRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75620">
        <property type="entry name" value="SSF75620"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00020">
        <property type="entry name" value="prfB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00745">
        <property type="entry name" value="RF_PROK_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0488">Methylation</keyword>
    <keyword evidence="3" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RF_PROK_I" evidence="4">
        <location>
            <begin position="131"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS00745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO17903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="256" mass="29079" checksum="0E423BB91CF1462F" modified="2015-11-11" version="1">MRTLLGESHDHCSAYLSIYAGAGGTESCDWVSMLFRMYGRWVEKSGYTQSLIDVLPGEEAGIKRITVLVKGDYVYGYLKSEIGVHRLVRISPFDANARRHTSFAAVDVLPEIEEEEEIEINENELRVDTYRASGAGGQHVNKTSSAVRITHIPTGIVVQCQSERSQHQNRRVALSMLKAKMYQIKEKEREKELAAAYDEKGEIAWGHQIRSYVLQPYSLVKDLRTDKETGNTQAVLDGEIDEFMEAYLKWRMAKAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPJ3</accession>
    <name>A0A0M2UPJ3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Magnesium transport protein CorA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">corA</name>
        <name evidence="7" type="ORF">BROFUL_03261</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Mediates influx of magnesium ions.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Membrane</location>
            <topology evidence="1 6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000299">
        <property type="protein sequence ID" value="KKO18038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18038">
        <property type="protein sequence ID" value="KKO18038"/>
        <property type="gene ID" value="BROFUL_03261"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4022"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015087">
        <property type="term" value="F:cobalt ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015095">
        <property type="term" value="F:magnesium ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045861">
        <property type="entry name" value="CorA_cytoplasmic_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045863">
        <property type="entry name" value="CorA_TM1_TM2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004488">
        <property type="entry name" value="Mg/Co-transport_prot_CorA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002523">
        <property type="entry name" value="MgTranspt_CorA/ZnTranspt_ZntB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01544">
        <property type="entry name" value="CorA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143865">
        <property type="entry name" value="SSF143865"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144083">
        <property type="entry name" value="SSF144083"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00383">
        <property type="entry name" value="corA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0406">Ion transport</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="294"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="330"/>
            <end position="350"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009765"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU362010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="355" mass="41029" checksum="5053CE7ED354F6B5" modified="2015-11-11" version="1">MVKLIKKRSRKAGLPPGSLIHIGEKKTEEVKIAIIEYDEAHFHEQTARSVEECFPFKDKNRSTVAWINIDGIHEGEILGKLGEGFGLHPLIVEDIMNTDQRPKCEDFDAYYYVVLKMLHCNGKDGEIISEQVSLILGSNFVISFQERAGDVFRGIMDRVRTNKGRIRKMGADYLAYCLLDAIVDNYFIIMETLGEKIELLEDELVSNPTPKVLRTIYHLKRNMILLRRSVWPLREVIGGLERGGSLLMRESTRIYLRDIYDHTIHIIDTLETFREMIAGMLEIYLSSISNRVNAVIKVLTMIATIFMPLTFIAGIYGMNFKYLPELEWRWGYPMVLLIMACVTATMVYFFKKKKW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPK3</accession>
    <name>A0A0M2UPK3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Biotin carboxylase</fullName>
            <ecNumber evidence="5">6.3.4.14</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Acetyl-coenzyme A carboxylase biotin carboxylase subunit A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_03271</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>ATP + hydrogencarbonate + N(6)-biotinyl-L-lysyl-[protein] = ADP + H(+) + N(6)-carboxybiotinyl-L-lysyl-[protein] + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13501"/>
            <dbReference type="Rhea" id="RHEA-COMP:10505"/>
            <dbReference type="Rhea" id="RHEA-COMP:10506"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:83144"/>
            <dbReference type="ChEBI" id="CHEBI:83145"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.4.14"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Lipid metabolism; malonyl-CoA biosynthesis; malonyl-CoA from acetyl-CoA: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Acetyl-CoA carboxylase is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and the two subunits of carboxyl transferase in a 2:2 complex.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.14" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000299">
        <property type="protein sequence ID" value="KKO18048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18048">
        <property type="protein sequence ID" value="KKO18048"/>
        <property type="gene ID" value="BROFUL_03271"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4032"/>
    <dbReference type="UniPathway" id="UPA00655">
        <property type="reaction ID" value="UER00711"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003989">
        <property type="term" value="F:acetyl-CoA carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004075">
        <property type="term" value="F:biotin carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:2001295">
        <property type="term" value="P:malonyl-CoA biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004549">
        <property type="entry name" value="Acetyl_CoA_COase_biotin_COase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005481">
        <property type="entry name" value="BC-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011764">
        <property type="entry name" value="Biotin_carboxylation_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005482">
        <property type="entry name" value="Biotin_COase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005479">
        <property type="entry name" value="CbamoylP_synth_lsu-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011054">
        <property type="entry name" value="Rudment_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02785">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00289">
        <property type="entry name" value="Biotin_carb_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02786">
        <property type="entry name" value="CPSase_L_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00878">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51246">
        <property type="entry name" value="SSF51246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00514">
        <property type="entry name" value="accC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50979">
        <property type="entry name" value="BC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00866">
        <property type="entry name" value="CPSASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00867">
        <property type="entry name" value="CPSASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0092">Biotin</keyword>
    <keyword evidence="5" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="5" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="1 5" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="5" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="2 4 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Biotin carboxylation" evidence="7">
        <location>
            <begin position="1"/>
            <end position="446"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-grasp" evidence="6">
        <location>
            <begin position="120"/>
            <end position="317"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU365063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="451" mass="49837" checksum="CD59284AFC9C4A99" modified="2015-11-11" version="1">MFSRIMVANRGEIALRIIRACREMGIETVAICSKSDKDAMYLKQADITVCVGPSEAEGSYLNIPSIISAAEITDIEAIHPGYGFLSEVSHFAEVCESSKIVFIGPKSDVLKKLGDKTEARKIAQACKVPVVPGSESVIKSQQQALDVAHKIGYPVIIKASSGGGGRGMRVAHNDISLVNSLAIAQREAESAFKDPSIYIEKYIEDTRHVEVQIFGDNYGNIIHLGERDCTLQRKHQKLIEESPSPAISERLREEICKAAIKIAKAVNYTNAGTVEFLVNKAGDFYFIEVNTRLQVEHPVTEMVTGIDLVKQQIRIASGERMNIKQKRVRPRGVAIECRINAEDPNNGFRPQPGKITFYNPPGGRGVRVDSHVHAGYQVPPYYDSMISKLIVHQKTREEAIACMKRALGEYVIEGIKTTIPLNLELIAHSQFASGNINTNFVENLLLKNQHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPP4</accession>
    <name>A0A0M2UPP4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">Aspartokinase</fullName>
            <ecNumber evidence="13">2.7.2.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">BROFUL_03236</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 13">
            <text>ATP + L-aspartate = 4-phospho-L-aspartate + ADP</text>
            <dbReference type="Rhea" id="RHEA:23776"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57535"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.2.4"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 14">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 1/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 14">Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-homoserine from L-aspartate: step 1/3.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4 14">Amino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 1/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 13">Belongs to the aspartokinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.2.4" evidence="13"/>
    <dbReference type="EMBL" id="LAQJ01000295">
        <property type="protein sequence ID" value="KKO18088.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18088">
        <property type="protein sequence ID" value="KKO18088"/>
        <property type="gene ID" value="BROFUL_03236"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3986"/>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00015"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00050">
        <property type="reaction ID" value="UER00461"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00051">
        <property type="reaction ID" value="UER00462"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004072">
        <property type="term" value="F:aspartate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009088">
        <property type="term" value="P:threonine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd04261">
        <property type="entry name" value="AAK_AKii-LysC-BS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036393">
        <property type="entry name" value="AceGlu_kinase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041740">
        <property type="entry name" value="AKii-LysC-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001048">
        <property type="entry name" value="Asp/Glu/Uridylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005260">
        <property type="entry name" value="Asp_kin_monofn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001341">
        <property type="entry name" value="Asp_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018042">
        <property type="entry name" value="Aspartate_kinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027795">
        <property type="entry name" value="CASTOR_ACT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00696">
        <property type="entry name" value="AA_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01842">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13840">
        <property type="entry name" value="ACT_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000726">
        <property type="entry name" value="Asp_kin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53633">
        <property type="entry name" value="SSF53633"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00656">
        <property type="entry name" value="asp_kin_monofn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00657">
        <property type="entry name" value="asp_kinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00324">
        <property type="entry name" value="ASPARTOKINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 14" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="10 12" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9 13 16" id="KW-0418">Kinase</keyword>
    <keyword evidence="11" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="8 12" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 13" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="ACT" evidence="15">
        <location>
            <begin position="264"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <begin position="7"/>
            <end position="10"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="47"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="74"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <begin position="173"/>
            <end position="174"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="179"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="184"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000709"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004766"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00010122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR000726-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU003448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU004249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="KKO18088.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="413" mass="44787" checksum="B0D53B2C55187979" modified="2015-11-11" version="1">MGLIVQKFGGTSVANAERIKAAAKRIVETYKAGNQVIVVVSARGQTTDELIDLAREITDTPSTREMDMLMSTGEQISIALVAMAIHALGYPAVSFTGGQVGIVTDSYHTKARIRNISTDRIKKEVDNGTIVIVAGFQGIDANENITTLGRGGSDTTAVALAAIMKADRCDIFTDVDGIYTADPRKVPHARKLDKVSYDEILELASLGAQVMHSRSIEFAKKYDVPLYVCSSFNNKEGTLICKEAKEMEDIVVSGVAVSKDDAKITIRAVPDVPGQAAKIFHEIAKRNINVDMIIQNASIEGRADVTFTVPRSDLREALNVAEKIRKDLGAKEVLHDSKIAKLSVVGIGMRSHCGVAEKMFSVLAMEKINIQMISTSEIKISCVIDEAHADRALRTVHTAFGLDKVEKEEVVKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPW0</accession>
    <name>A0A0M2UPW0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_03383</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the peptidase M50B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17932">
        <property type="protein sequence ID" value="KKO17932"/>
        <property type="gene ID" value="BROFUL_03383"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044838">
        <property type="entry name" value="EGY1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008915">
        <property type="entry name" value="Peptidase_M50"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31412">
        <property type="entry name" value="PTHR31412"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02163">
        <property type="entry name" value="Peptidase_M50"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="65"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="101"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="131"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="157"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="199"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="249"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M50" evidence="8">
        <location>
            <begin position="159"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO17932.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="269" mass="29834" checksum="ACE43D759B2D42BC" modified="2015-11-11" version="1">MEQLTPANFFSKARIHVLLFIATFLTTYYVNGPWYSVTIMMILLSHELGHFFMCRKYHVAATMPYFLPLPFPPFGTFGAVIKMKGLIPDKRALFDIGATGPLMGLFLSIPAIIIGLNLSDVRPVPTDTSDYLGLGEPILFSFISKLVFGHLPDGMDIYLHPVAFAGWAGLFVTALNLLPIGQLDGGHILYALLGKKSAIIYRIGIFIFCVIAILVYPGWMVFAILLLIFGFRHPAPIDEVSGLDLKRKILGIILFIVFLVSFTPVPLKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ19</accession>
    <name>A0A0M2UQ19_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03136</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000287">
        <property type="protein sequence ID" value="KKO18183.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18183">
        <property type="protein sequence ID" value="KKO18183"/>
        <property type="gene ID" value="BROFUL_03136"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3868"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18183.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="86" mass="9262" checksum="A737C99B89375EE5" modified="2015-11-11" version="1">MNCRIGCGACCIALSISSSIPGMPDGKPAGVRCPQLSPDNRCLVFGKPERPAVCLSLRPREEMCGRTSEEAHAYLEFLEQCTDPSC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ96</accession>
    <name>A0A0M2UQ96_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03052</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000283">
        <property type="protein sequence ID" value="KKO18263.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18263">
        <property type="protein sequence ID" value="KKO18263"/>
        <property type="gene ID" value="BROFUL_03052"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18263.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="64" mass="7210" checksum="06B5D9F41F536DCA" modified="2015-11-11" version="1" fragment="single">LPYPYPLQIVSLQEIGNAPYKEGVEKSLNVVSRESTLASEGANFPSDKREEILNSIMKKEVRFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQK8</accession>
    <name>A0A0M2UQK8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03160</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000290">
        <property type="protein sequence ID" value="KKO18152.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18152">
        <property type="protein sequence ID" value="KKO18152"/>
        <property type="gene ID" value="BROFUL_03160"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="59"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18152.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="78" mass="8716" checksum="6E3E64627779E55C" modified="2015-11-11" version="1">MKRAFVVSCMVFFVYSLGCKTEHKVEVEVKPMQITIDVNIRIDRQLEDFFGNLDEAAKSISSGTSDAGKTEESNKPAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQP4</accession>
    <name>A0A0M2UQP4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Ion-translocating oxidoreductase complex subunit C</fullName>
            <ecNumber evidence="9">7.-.-.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Rnf electron transport complex subunit C</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">rnfC</name>
        <name evidence="11" type="ORF">BROFUL_03347</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="9">Binds 2 [4Fe-4S] clusters per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">The complex is composed of six subunits: RnfA, RnfB, RnfC, RnfD, RnfE and RnfG.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.-.-.-" evidence="9"/>
    <dbReference type="EMBL" id="LAQJ01000306">
        <property type="protein sequence ID" value="KKO17975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17975">
        <property type="protein sequence ID" value="KKO17975"/>
        <property type="gene ID" value="BROFUL_03347"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4120"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00461">
        <property type="entry name" value="RsxC_RnfC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010208">
        <property type="entry name" value="Ion_transpt_RnfC/RsxC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011538">
        <property type="entry name" value="Nuo51_FMN-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037225">
        <property type="entry name" value="Nuo51_FMN-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026902">
        <property type="entry name" value="RnfC_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019554">
        <property type="entry name" value="Soluble_ligand-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43034">
        <property type="entry name" value="PTHR43034"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01512">
        <property type="entry name" value="Complex1_51K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13237">
        <property type="entry name" value="Fer4_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13375">
        <property type="entry name" value="RnfC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10531">
        <property type="entry name" value="SLBB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142019">
        <property type="entry name" value="SSF142019"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01945">
        <property type="entry name" value="rnfC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 9" id="KW-0249">Electron transport</keyword>
    <keyword evidence="7 9" id="KW-0408">Iron</keyword>
    <keyword evidence="8 9" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="4 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 9" id="KW-0677">Repeat</keyword>
    <keyword evidence="9" id="KW-1278">Translocase</keyword>
    <keyword evidence="2 9" id="KW-0813">Transport</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="10">
        <location>
            <begin position="363"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="372"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="375"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="378"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="382"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="411"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="414"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="417"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="421"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO17975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="445" mass="48689" checksum="576070BBA5CA4DA7" modified="2015-11-11" version="1">MTLMKSRLKTFLGGIHPAEDGKALTLDKQKTTLPLPKTVYLVMSQHIGAPAKPIVKKGDVVKKGQLVGDAQGFISAHVHASVSGKVIDVAPWPHPVTGMKCPAVIIENSGEEVWAEDVNVASDTDLLSSEEIRRRIHTAGIVGLGGATFPTHVKLTPPKDKSIDTVVMNGAECEPYLTCDYRLMLDKPHEIIEGLKLMMRCIGCKKAHIGIEENKRDVYAIFRDIVSKDPDIKVDLMEVKYPQGAEHQLIKALLNREFKPTQLPLEVGAIVANVGTAFAVYEAVKFHRPLIERIVTVTGNGVENPQNFLVRLGTPVRQLLEEARLTADVNKIIFGGPMMGIAQGSIDTAVTIKGTGGILVLRDAQRWESHACIRCGRCVDSCPYGLNPSELSIVCEAKEFDQALDNNVMECKECGCCSYVCPAKRPIVHLIKFAKSEIAKRKMKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQR5</accession>
    <name>A0A0M2UQR5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03318</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000303">
        <property type="protein sequence ID" value="KKO17995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17995">
        <property type="protein sequence ID" value="KKO17995"/>
        <property type="gene ID" value="BROFUL_03318"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4087"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035069">
        <property type="entry name" value="TTHA1013/TTHA0281-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143100">
        <property type="entry name" value="SSF143100"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17995.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="74" mass="8093" checksum="84E477463D74F0BB" modified="2015-11-11" version="1">MKQFKIIVEKHPDGYVAYPLGLKGVVVGQGDTYEDALSDVKSAIRFHMESFGEAVLDIEPPILEAFIAEAGIEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQS7</accession>
    <name>A0A0M2UQS7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">NADH-quinone oxidoreductase subunit A</fullName>
            <ecNumber evidence="6">7.1.1.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">NADH dehydrogenase I subunit A</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">NDH-1 subunit A</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">NUO1</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">nuoA</name>
        <name evidence="8" type="ORF">BROFUL_03068</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 7">
            <text>a quinone + 5 H(+)(in) + NADH = a quinol + 4 H(+)(out) + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:57888"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="6">NDH-1 is composed of 14 different subunits. Subunits NuoA, H, J, K, L, M, N constitute the membrane sector of the complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6 7">Cell membrane</location>
            <topology evidence="6 7">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the complex I subunit 3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.-" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000285">
        <property type="protein sequence ID" value="KKO18222.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18222">
        <property type="protein sequence ID" value="KKO18222"/>
        <property type="gene ID" value="BROFUL_03068"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3793"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048038">
        <property type="term" value="F:quinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.1610">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01394">
        <property type="entry name" value="NDH1_NuoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023043">
        <property type="entry name" value="NAD(P)H_OxRDtase_bac/plastid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000440">
        <property type="entry name" value="NADH_UbQ/plastoQ_OxRdtase_su3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038430">
        <property type="entry name" value="NDAH_ubi_oxred_su3_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11058">
        <property type="entry name" value="PTHR11058"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00507">
        <property type="entry name" value="Oxidored_q4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 7" id="KW-0520">NAD</keyword>
    <keyword evidence="6 7" id="KW-0874">Quinone</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-1278">Translocase</keyword>
    <keyword evidence="3 6 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 6" id="KW-0813">Transport</keyword>
    <keyword evidence="6" id="KW-0830">Ubiquinone</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="6"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="59"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="88"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01394"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003639"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18222.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="117" mass="13396" checksum="55C9C80092E6C00F" modified="2015-11-11" version="1">MTHYLPILILFTVAVGFAVTNIGLSAILGRRKPTAEKLSPYECGIDPVGSARERFSVKFYLIAMLFVIFDIEVIFLYPWAVAFKSLKLFGFIEMLIFLGILLVCYFYLWKKGGLEWD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQT3</accession>
    <name>A0A0M2UQT3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative nitrite and sulphite reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_03288</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000301">
        <property type="protein sequence ID" value="KKO18010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18010">
        <property type="protein sequence ID" value="KKO18010"/>
        <property type="gene ID" value="BROFUL_03288"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015995">
        <property type="term" value="P:chlorophyll biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015979">
        <property type="term" value="P:photosynthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.550">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.413.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013580">
        <property type="entry name" value="LI-POR_suB-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006067">
        <property type="entry name" value="NO2/SO3_Rdtase_4Fe4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045169">
        <property type="entry name" value="NO2/SO3_Rdtase_4Fe4S_prot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045854">
        <property type="entry name" value="NO2/SO3_Rdtase_4Fe4S_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006066">
        <property type="entry name" value="NO2/SO3_Rdtase_FeS/sirohaem_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042298">
        <property type="entry name" value="P-CP_red_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11493">
        <property type="entry name" value="PTHR11493"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01077">
        <property type="entry name" value="NIR_SIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08369">
        <property type="entry name" value="PCP_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56014">
        <property type="entry name" value="SSF56014"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00365">
        <property type="entry name" value="NIR_SIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="173"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="203"/>
            <end position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18010.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="297" mass="32993" checksum="EE2C47AD4C950AA2" modified="2015-11-11" version="1">MCLEWDKSASSLLEKVPPFVQKTVREKVETLARERGRTRVTEAEVMAARDSFMDKSQPVAGAPQAGKTKPADDKKLSILKKYPKYFDSAGNPVLYQIKPCRGAEVNCPFLITDSKILADKIRNRLEEVKFTEKLMNKIEGQILPHHTLKLAVSGCPNSCSMPQIKDFGVHAVEPVFVDPESACIECMKCVETCREDAITIQDGQVSIDKEKCVHCGLCAKVCPSGSIKAGKKTYRTMVGGKVGRHPKFAVDILPQAEESATLKALDVCVDMILSSKTEHRFRVLLEQQGIEEIKKRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQZ8</accession>
    <name>A0A0M2UQZ8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_02783</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000264">
        <property type="protein sequence ID" value="KKO18513.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18513">
        <property type="protein sequence ID" value="KKO18513"/>
        <property type="gene ID" value="BROFUL_02783"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3444"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025662">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025943">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025944">
        <property type="entry name" value="Sigma_54_int_dom_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00158">
        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01590">
        <property type="entry name" value="HTHFIS"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00675">
        <property type="entry name" value="SIGMA54_INTERACT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00676">
        <property type="entry name" value="SIGMA54_INTERACT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00688">
        <property type="entry name" value="SIGMA54_INTERACT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="8">
        <location>
            <begin position="3"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="7">
        <location>
            <begin position="142"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="6">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18513.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="459" mass="51710" checksum="0E266128C6FBB9E5" modified="2015-11-11" version="1">MFNILVVEDQKNMRESLAIAFRRSGYNVDSVESGEKAIAVQNEHFYDLAVVDLKMENMDGLEVLSRIKRINPSTEVVVMTAYGTIDSAIQAMRRGAYDYVTKPFQLPDILSVVERALEKKRLSDKVTILQKEGKESYQFEGVIGNSPVMIRLLNILMELVRSESTVLITGESGTGKELIARAIHSNSPRRNKPFIVVNCGALPENLQESELFGHALGSFTGAVKDKRGIFLEAQGGTLFLDEIGETSLSTQVKLLRFLQNGEIRRVGENKPIYLDIRIIVATNKDLDEATKNSSFRKDLFYRLNVIRIHVPPLRERKEDIPLLINYFMNRYSDKLKKRAPEISGDAMELLKEHLWPGNVRELENVIERAVTLAKGNQITPDDLALQSAAADTMNAMIEVGGIRAALAQEERKTIVEILRKHAGNRKQAANNLGISTTTLWRKMKEYQIVSKTSYNTEVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR20</accession>
    <name>A0A0M2UR20_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative phosphohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03039</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18312.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18312">
        <property type="protein sequence ID" value="KKO18312"/>
        <property type="gene ID" value="BROFUL_03039"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013656">
        <property type="entry name" value="PAS_4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08448">
        <property type="entry name" value="PAS_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PAS_4" evidence="1">
        <location>
            <begin position="173"/>
            <end position="275"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18312.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="296" mass="33671" checksum="0F86CD6DF989E7F4" modified="2015-11-11" version="1">MPSVSDEKRLYQRIKILSDAFMMSARALDYKAVLRAATRHFQIFTEADASVLFLNTRDDSLTPVCSSGIPFSKIKGVILPRSLRLKDIVTHPVLDLRYTSFMNTPLIYNRKLIGLSAVFSIVPEKFHGLEHDKYENLFLTMLASYLAVSIENATLMDTIKSIESSKFDWESTFDALDDLISIHDKDFTILRANKAVARKFKMDIRQIVGEKCYKIFHCAEEPWKTCPHRRTMETMAPCTEMIDDQHMGGAFHVTTFPHVDVRGKFVGSIHVAKEIIGQKDILEQLIRPSHGTVAIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR68</accession>
    <name>A0A0M2UR68_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02716</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000252">
        <property type="protein sequence ID" value="KKO18583.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18583">
        <property type="protein sequence ID" value="KKO18583"/>
        <property type="gene ID" value="BROFUL_02716"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18583.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="21" mass="2476" checksum="5D3F64CA1A464DE1" modified="2015-11-11" version="1" fragment="single">MKTIAQNEERRQPKIKTEMSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URL1</accession>
    <name>A0A0M2URL1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02582</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000239">
        <property type="protein sequence ID" value="KKO18703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18703">
        <property type="protein sequence ID" value="KKO18703"/>
        <property type="gene ID" value="BROFUL_02582"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025737">
        <property type="entry name" value="Phenol_MetA_deg_put"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13557">
        <property type="entry name" value="Phenol_MetA_deg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644028" evidence="1">
        <location>
            <begin position="29"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="323" mass="36000" checksum="22A4FFB520F85EE0" modified="2015-11-11" version="1">MGIINRRFKYVCSLFVLLLLLCGTNVDANHGPGTGGGATTIPAITLKSGTFSLGLRTELTEFESISDSKLLRKAEKAGSFDVIDRTFIHTVEMGYGITDDLTFGLSFGWFEAINFRESELEDDEVEVFQANPDGITDLWLSGKYRFWRGHQGHYAFLAGVKFPTGVDDKENNHGEKLEAVEQPGSGSYDFATGLAYSRWFTEKWTLDTNVHYTFRTEGARDFEIGDRMDWNLATAYQVVQRNKYPNFAPVGEINVRYLFRDEEDGEDIKDSGGTTVFLSPGVRVGVTSHLGIGASVFFPVFQNLNGEQQETDFKAVVGVSYGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US27</accession>
    <name>A0A0M2US27_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02859</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000269">
        <property type="protein sequence ID" value="KKO18450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18450">
        <property type="protein sequence ID" value="KKO18450"/>
        <property type="gene ID" value="BROFUL_02859"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="197"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="197"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="239" mass="26578" checksum="65D78B1F093F6D00" modified="2015-11-11" version="1">MCGSSVYLFPQFHRLNELSRQSQLPALILYKESPQCMQHGPLPPELITLDLRHAGHIFTGKPLFSSFSYAGCLQTVATICCRRNYWFHRLLVFPALFSYSFSTPYTPASGGHWSATFLVDFMPLCVASNALINKACPCGTRRQVCPCHPTQSLNLTRMGVGGGLDFFTTSTIPGGRFETCPCTACNTLFLEYSGEFSEPTSSPRLISGKAPGYTQRTQGRWQTPRGTATTRRSSRRPDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US39</accession>
    <name>A0A0M2US39_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02403</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the DprA/Smf family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000230">
        <property type="protein sequence ID" value="KKO18888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18888">
        <property type="protein sequence ID" value="KKO18888"/>
        <property type="gene ID" value="BROFUL_02403"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009294">
        <property type="term" value="P:DNA-mediated transformation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003488">
        <property type="entry name" value="DprA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02481">
        <property type="entry name" value="DNA_processg_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="205" mass="22838" checksum="389C3F8D3A017B39" modified="2015-11-11" version="1">MNIIKLHKGDPSYPTALQTHLGDNAPEFITALGNLGILQNKPLALFCSIKCPGSIILQAYDLAQHLRQAGATVISGFHTPMERECLNILLRGSQPIIICPARSIEGMRILGTWRRPIDEGRLLILSPFDQKYRRITAALGEKRNEFVAAIADRIFVAHATPGGKTEQFCRKIISWDKPLLTFSCNENMSLVSIGARYVEIEDILR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USB6</accession>
    <name>A0A0M2USB6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02351</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18958.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18958">
        <property type="protein sequence ID" value="KKO18958"/>
        <property type="gene ID" value="BROFUL_02351"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18958.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="100" mass="10953" checksum="61141E1DFF6585C8" modified="2015-11-11" version="1">MSNISATQLLATRPYCKELGCRNFLYFNQRISSAGDLKKAIVAMESASGSRKSPPSRGRTMPPIIMHPLKSSSQWEVAAELIMTANNLSIANQTKTHATQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USG1</accession>
    <name>A0A0M2USG1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">HlyD_D23 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03377</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17926">
        <property type="protein sequence ID" value="KKO17926"/>
        <property type="gene ID" value="BROFUL_03377"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032317">
        <property type="entry name" value="HlyD_D23"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16576">
        <property type="entry name" value="HlyD_D23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HlyD_D23" evidence="3">
        <location>
            <begin position="10"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="277"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="72"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="279"/>
            <end position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO17926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="296" mass="32575" checksum="ABCE70FF5D4003C1" modified="2015-11-11" version="1">MVDPGAPPFRSSVAGAGIVEANTENIAIGTLVAGVVSEVYVVVGSDVKAGEPLFKIEDRDLQAQLVTRQTALRVARANVKVEKAQLNDLRNQLTRAILLSRKEVISIDDLDRRRYAVETAEAKLAFARAEVAAAQAQVKETEINLDRRIVRAPYNGKVLQSKIHLGEFAPAGITQTPLMLFGNTKPLNVRVDVDENDAWRVHPETPAFAFLRGNREIKTALQFVRFEPYVIPKKSLTGDSTERVDTRVLQVIYSIETDALPIFPGQQMDVFIETPDHITPSGTLPQSGGEIQETHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USH3</accession>
    <name>A0A0M2USH3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Aminotransferase</fullName>
            <ecNumber evidence="1">2.6.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03387</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.-" evidence="1"/>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17936.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17936">
        <property type="protein sequence ID" value="KKO17936"/>
        <property type="gene ID" value="BROFUL_03387"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4163"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004838">
        <property type="entry name" value="NHTrfase_class1_PyrdxlP-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00105">
        <property type="entry name" value="AA_TRANSFER_CLASS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="2">
        <location>
            <begin position="31"/>
            <end position="388"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO17936.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="395" mass="43518" checksum="F0C8282F65195336" modified="2015-11-11" version="1">MTLSRIAREVKTSATLAITAKAKQLAAKGVDVIGFGAGEPDFDVPENVKNAAIKAIKDGYNKYTPTAGAPDLKEAICEKLLKDNQLKYTPSQILVSAGAKQAILNIVLVLCDSGDEAIIPSPYWVSYSEMVIMAGAKPVFLNTTDREHFKITKETLAKVITPRTKMLFMNSPNNPTGMVYTEKELREIVCFAVEKGIYVISDEIYEKILYDGVKHISPATLGDECYKKVITVNGFSKVYSMTGWRLGYAAGPEEIIKAATNIQDHTTSGANSITQKAGVEALKGNQDPVIFMIKEFDKRRRYIVERLNKIKGVSCLLPQGAFYVFPRVSDLYKRKIAGQSVANSFDLVNLLLEKTFVAFVPGAPFGADDYIRISYATSMANIEKGIDRFEKFLGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USM4</accession>
    <name>A0A0M2USM4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02249</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19068">
        <property type="protein sequence ID" value="KKO19068"/>
        <property type="gene ID" value="BROFUL_02249"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="69" mass="7922" checksum="17149AC96C6EEA5C" modified="2015-11-11" version="1">MKFRPGFEKNCAVIMGRYIKRLSIFYVHNTRHDSVSDLFANAFVGLPSHRFTRGQFFLAKVGNGEKILS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USN4</accession>
    <name>A0A0M2USN4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cobyrinic acid a,c-diamide synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02450</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000232">
        <property type="protein sequence ID" value="KKO18857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18857">
        <property type="protein sequence ID" value="KKO18857"/>
        <property type="gene ID" value="BROFUL_02450"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3045"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002586">
        <property type="entry name" value="CobQ/CobB/MinD/ParA_Nub-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014433">
        <property type="entry name" value="CooC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01656">
        <property type="entry name" value="CbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005647">
        <property type="entry name" value="CooC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CbiA" evidence="1">
        <location>
            <begin position="3"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="256" mass="27355" checksum="8056655D49AC587A" modified="2015-11-11" version="1">MKIAVSGKGGVGKTTFVATLARVFAENGKKVIAIDADPVANLAVTLGVKNVSQIVPISQMKDLIKERTGATSEEYGKFFQLNPTVSDLPDKLSLEQEGIKLMVLGAVKRGGGGCACPESAFLRTLLSHLIVQRDEVVIVDMEAGVEHLGRATVKAVNALIVIVEPGSKSIQTAFQVKKLADDIGLRAIYAVGNKVASDEHRALIEKGLSGIPVLGFISYNEKVLESDIVGKAVFSENSQLLDEVRLIKKNLEDCTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USN8</accession>
    <name>A0A0M2USN8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Siroheme decarboxylase</fullName>
            <ecNumber evidence="5">4.1.1.111</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_03289</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>2 H(+) + siroheme = 12,18-didecarboxysiroheme + 2 CO2</text>
            <dbReference type="Rhea" id="RHEA:19093"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:60052"/>
            <dbReference type="ChEBI" id="CHEBI:140497"/>
            <dbReference type="EC" id="4.1.1.111"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Porphyrin-containing compound metabolism.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the Ahb/Nir family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.111" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000301">
        <property type="protein sequence ID" value="KKO18011.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18011">
        <property type="protein sequence ID" value="KKO18011"/>
        <property type="gene ID" value="BROFUL_03289"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00182"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000485">
        <property type="entry name" value="AsnC-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040523">
        <property type="entry name" value="AsnC_trans_reg2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019888">
        <property type="entry name" value="Tscrpt_reg_AsnC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17805">
        <property type="entry name" value="AsnC_trans_reg2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13404">
        <property type="entry name" value="HTH_AsnC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00344">
        <property type="entry name" value="HTH_ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH asnC-type" evidence="6">
        <location>
            <begin position="3"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="domain" description="AsnC_trans_reg2" evidence="7">
        <location>
            <begin position="64"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023444"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023457"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF13404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF17805"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18011.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="155" mass="18039" checksum="C6F5CC87E8CCEFE8" modified="2015-11-11" version="1">MMLSDTDRKILHRLQSNLPLVSRPFLELSKELAVDEDTIIERIKFMIEKGYVRRLAPIINTQAMGREATLAAVNVPEDRIDEVSAIINEYSGVSHNYLRKGENKHIPYNMWFTMSAKDDEELNSRLKEIENRTGLIVRTMPTIKKFKIGVRFKIY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USP3</accession>
    <name>A0A0M2USP3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Big-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_02218</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the intimin/invasin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000221">
        <property type="protein sequence ID" value="KKO19083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19083">
        <property type="protein sequence ID" value="KKO19083"/>
        <property type="gene ID" value="BROFUL_02218"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2770"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003344">
        <property type="entry name" value="Big_1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008964">
        <property type="entry name" value="Invasin/intimin_cell_adhesion"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006558">
        <property type="entry name" value="LamG-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02369">
        <property type="entry name" value="Big_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00634">
        <property type="entry name" value="BID_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00560">
        <property type="entry name" value="LamGL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49373">
        <property type="entry name" value="SSF49373"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="SSF49899"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51127">
        <property type="entry name" value="BIG1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005643987" description="Big-1 domain-containing protein" evidence="4">
        <location>
            <begin position="29"/>
            <end position="668"/>
        </location>
    </feature>
    <feature type="domain" description="Big-1" evidence="5">
        <location>
            <begin position="346"/>
            <end position="439"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="278"/>
            <end position="300"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="668" mass="69513" checksum="B120701BF5C44340" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT30</accession>
    <name>A0A0M2UT30_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8">Malto-oligosyltrehalose trehalohydrolase</fullName>
            <shortName evidence="8">MTHase</shortName>
            <ecNumber evidence="3 8">3.2.1.141</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7 8">4-alpha-D-((1-&gt;4)-alpha-D-glucano)trehalose trehalohydrolase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6 8">Maltooligosyl trehalose trehalohydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BROFUL_02516</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1 8">Glycan biosynthesis; trehalose biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the glycosyl hydrolase 13 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.141" evidence="3 8"/>
    <dbReference type="EMBL" id="LAQJ01000236">
        <property type="protein sequence ID" value="KKO18775.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18775">
        <property type="protein sequence ID" value="KKO18775"/>
        <property type="gene ID" value="BROFUL_02516"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3124"/>
    <dbReference type="UniPathway" id="UPA00299"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033942">
        <property type="term" value="F:4-alpha-D-(1-&gt;4)-alpha-D-glucanotrehalose trehalohydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005992">
        <property type="term" value="P:trehalose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.760">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022567">
        <property type="entry name" value="DUF3459"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006047">
        <property type="entry name" value="Glyco_hydro_13_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014756">
        <property type="entry name" value="Ig_E-set"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012768">
        <property type="entry name" value="Trehalose_TreZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044901">
        <property type="entry name" value="Trehalose_TreZ_E-set_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00128">
        <property type="entry name" value="Alpha-amylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11941">
        <property type="entry name" value="DUF3459"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006337">
        <property type="entry name" value="Trehalose_TreZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00642">
        <property type="entry name" value="Aamy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81296">
        <property type="entry name" value="SSF81296"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02402">
        <property type="entry name" value="trehalose_TreZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="5 8 13" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aamy" evidence="12">
        <location>
            <begin position="86"/>
            <end position="458"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10">
        <location>
            <begin position="256"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10">
        <location>
            <begin position="320"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10">
        <location>
            <begin position="388"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="9">
        <location>
            <position position="258"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="9">
        <location>
            <position position="295"/>
        </location>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="11">
        <location>
            <position position="389"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005199"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00015938"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00032057"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00033284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRNR" id="PIRNR006337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR006337-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR006337-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR006337-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM00642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO18775.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="625" mass="71202" checksum="E1BCAD9F9FD78372" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT46</accession>
    <name>A0A0M2UT46_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">50S ribosomal protein L10</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rplJ</name>
        <name evidence="6" type="ORF">BROFUL_02265</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the ribosomal stalk of the 50S ribosomal subunit. The N-terminus interacts with L11 and the large rRNA to form the base of the stalk. The C-terminus forms an elongated spine to which L12 dimers bind in a sequential fashion forming a multimeric L10(L12)X complex.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the universal ribosomal protein uL10 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000224">
        <property type="protein sequence ID" value="KKO19022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19022">
        <property type="protein sequence ID" value="KKO19022"/>
        <property type="gene ID" value="BROFUL_02265"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070180">
        <property type="term" value="F:large ribosomal subunit rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd05797">
        <property type="entry name" value="Ribosomal_L10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1730">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00362">
        <property type="entry name" value="Ribosomal_L10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022973">
        <property type="entry name" value="Ribosomal_L10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043141">
        <property type="entry name" value="Ribosomal_L10-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001790">
        <property type="entry name" value="Ribosomal_L10P"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11560">
        <property type="entry name" value="PTHR11560"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00466">
        <property type="entry name" value="Ribosomal_L10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160369">
        <property type="entry name" value="SSF160369"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00362"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="175" mass="18817" checksum="866185C9D50E14DE" modified="2015-11-11" version="1">MANEIKEAIVKEMVSSYRGKSNYLVAGYQGITALEFDQLRKDLRKKKISLGIVKNSLAGIAFKEIGVHGIVDLLKGPTAIITGDDDPVLMAKETIGWVKKIPLLSLRGGLVDGAMVSVHDINDLAKLPSMPVLRTQIITGIHAPIVGVAGAFNAVLRGLVTVFQAMKDKKEKEGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTA5</accession>
    <name>A0A0M2UTA5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetyl coenzyme A synthase alpha subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03114</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000286">
        <property type="protein sequence ID" value="KKO18216.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18216">
        <property type="protein sequence ID" value="KKO18216"/>
        <property type="gene ID" value="BROFUL_03114"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3844"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.261">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003781">
        <property type="entry name" value="CoA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016102">
        <property type="entry name" value="Succinyl-CoA_synth-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13380">
        <property type="entry name" value="CoA_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00881">
        <property type="entry name" value="CoA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52210">
        <property type="entry name" value="SSF52210"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CoA_binding" evidence="1">
        <location>
            <begin position="1"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="159" mass="17000" checksum="D5AA43133EB8EE2A" modified="2015-11-11" version="1">MAIVGASCEAGKVGHDPFKNLITCGYGGKVYPVNPKADNILGIKAYQNLREMNDNVDLAVLVVLAAQAIAIVDECHTQRIDSLIVISAGFKESGTEGAARERELHRKVKQYAMRMIGQNYLSLIDTKSSLNVSFAANMPAPGNIAFISQSGALCTSVLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTE6</accession>
    <name>A0A0M2UTE6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Phosphate-binding protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_03050</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Involved in the system for phosphate transport across the cytoplasmic membrane.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the PstS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000283">
        <property type="protein sequence ID" value="KKO18261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18261">
        <property type="protein sequence ID" value="KKO18261"/>
        <property type="gene ID" value="BROFUL_03050"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3764"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042301">
        <property type="term" value="F:phosphate ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006817">
        <property type="term" value="P:phosphate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024370">
        <property type="entry name" value="PBP_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011862">
        <property type="entry name" value="Phos-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12849">
        <property type="entry name" value="PBP_like_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02136">
        <property type="entry name" value="ptsS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0592">Phosphate transport</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0732">Signal</keyword>
    <keyword evidence="2 4" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5027137977" description="Phosphate-binding protein" evidence="4">
        <location>
            <begin position="29"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="domain" description="PBP_domain" evidence="5">
        <location>
            <begin position="47"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU367119"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF12849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="330" mass="36027" checksum="3DEFA27451FE2972" modified="2015-11-11" version="1">MKGKKSMAKRAWFSIAVFSFSMMGLTTAGGAVVVPEQIKPYVKVGGVSGNLNSIGSDTMNNLMTYWAEGFNKAYPNVNVQIEGKGSTTAPPALISGTAQIGPMSRTMKPTEIDAFDKKYGYKPTAIRTSLDALAVYVNKDNPLKGLSMPQVDAIFSKTRKGGYKTDITTWGQLGLTGDWAAKPISLYGRNSASGTYGYFKEHALYKGDFKNTVKEQPGSASVVQGATEDRYAMGYSAIGYQTSGIRAVPLSFMEGKPYKEADMKNVMNGSYPLARFLYVYINKKPGQPLDPLVKEFVKFILSKEGQELIVKDGYLPLPVSVVEEELKKIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTJ1</accession>
    <name>A0A0M2UTJ1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">3-oxoacyl-(Acyl-carrier-protein) synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02170</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000214">
        <property type="protein sequence ID" value="KKO19127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19127">
        <property type="protein sequence ID" value="KKO19127"/>
        <property type="gene ID" value="BROFUL_02170"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2708"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00834">
        <property type="entry name" value="KAS_I_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000794">
        <property type="entry name" value="Beta-ketoacyl_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014031">
        <property type="entry name" value="Ketoacyl_synth_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014030">
        <property type="entry name" value="Ketoacyl_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020841">
        <property type="entry name" value="PKS_Beta-ketoAc_synthase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11712">
        <property type="entry name" value="PTHR11712"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00109">
        <property type="entry name" value="ketoacyl-synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02801">
        <property type="entry name" value="Ketoacyl-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00825">
        <property type="entry name" value="PKS_KS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PKS_KS" evidence="3">
        <location>
            <begin position="6"/>
            <end position="413"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="413" mass="44664" checksum="386CDCDA168D43AD" modified="2015-11-11" version="1">MEKTRIVITGVSVISPIGNQKEIFWKNLANGVSGIKPITLFDVSKFKSKQAGEISDFDAKVYLGQKGIRHIDRTSLLVSSATVLAIKDANLENNTYNGDELGIVVGSTYGSIDSISSFDFQSLREGPNYVNPMDFPNTVLNAPASRASIFCKATGLNTTISNGVTSSVDAIIYASDFLRMGRVKAVIAGGVHGLTHDIFWGAHNSRILSGSREGNEEISAPFDKRRNGMVIGEASALVILETLEDALKRNAPIYAEIKGYGTAFDPKMAISKDYQIDGNKRAIMSAIQDANLTLNDISYISANAYSGIYGDAMETQVMKEVFGMRAQLIPVSAIKSMTGECYDASGALQTIAAVMSINAHTVPPTINYKERDPDCDLDYVANTARVLPVKNVLINTFSRLGNNSSLIISKYKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTK2</accession>
    <name>A0A0M2UTK2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">30S ribosomal protein S10</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4 6" type="primary">rpsJ</name>
        <name evidence="6" type="ORF">BROFUL_01925</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Involved in the binding of tRNA to the ribosomes.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Part of the 30S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the universal ribosomal protein uS10 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19398.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19398">
        <property type="protein sequence ID" value="KKO19398"/>
        <property type="gene ID" value="BROFUL_01925"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2394"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.600">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00508">
        <property type="entry name" value="Ribosomal_S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001848">
        <property type="entry name" value="Ribosomal_S10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018268">
        <property type="entry name" value="Ribosomal_S10_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027486">
        <property type="entry name" value="Ribosomal_S10_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036838">
        <property type="entry name" value="Ribosomal_S10_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11700">
        <property type="entry name" value="PTHR11700"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00338">
        <property type="entry name" value="Ribosomal_S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00971">
        <property type="entry name" value="RIBOSOMALS10"/>
    </dbReference>
    <dbReference type="SMART" id="SM01403">
        <property type="entry name" value="Ribosomal_S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54999">
        <property type="entry name" value="SSF54999"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01049">
        <property type="entry name" value="rpsJ_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00361">
        <property type="entry name" value="RIBOSOMAL_S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 6" id="KW-0689">Ribosomal protein</keyword>
    <feature type="domain" description="Ribosomal_S10" evidence="5">
        <location>
            <begin position="7"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00508"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM01403"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19398.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="102" mass="11841" checksum="D33F6FD9B2A317D5" modified="2015-11-11" version="1">MLDQKIRIRMEAYDHRILDQSSLEVVETAKRTGAKVFGPVPLPTRIERYTVLRSPHVDKKSREQFEIRTHKRLIDIFEPTAKTMDALNKINMPAGIEIKIKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTQ2</accession>
    <name>A0A0M2UTQ2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RHS Repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02101</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000210">
        <property type="protein sequence ID" value="KKO19192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19192">
        <property type="protein sequence ID" value="KKO19192"/>
        <property type="gene ID" value="BROFUL_02101"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2621"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19192.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="662" mass="73949" checksum="C322020101071F37" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU13</accession>
    <name>A0A0M2UU13_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Heat shock protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02805</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the small heat shock protein (HSP20) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000265">
        <property type="protein sequence ID" value="KKO18481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18481">
        <property type="protein sequence ID" value="KKO18481"/>
        <property type="gene ID" value="BROFUL_02805"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002068">
        <property type="entry name" value="A-crystallin/Hsp20_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007052">
        <property type="entry name" value="CS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008978">
        <property type="entry name" value="HSP20-like_chaperone"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00011">
        <property type="entry name" value="HSP20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49764">
        <property type="entry name" value="SSF49764"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51203">
        <property type="entry name" value="CS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01031">
        <property type="entry name" value="SHSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="SHSP" evidence="3">
        <location>
            <begin position="35"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="domain" description="CS" evidence="4">
        <location>
            <begin position="39"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003616"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS01031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="150" mass="17474" checksum="E98981CB2DFC14D0" modified="2015-11-11" version="1">MSIHYNNPYKTHAHENHLEKIFSEFFTLNKNIPMQSSSPWQPPTDIYETPDDIVVKMSIPGMKSEDIHISFLEDVLTIHGLVSDASPRERICFYQVEIRYGYFERKIVIPKSVDTENMQATYKDGFLQVVLPKTKQPSSQKISVKIKFHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU21</accession>
    <name>A0A0M2UU21_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aminotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03346</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000306">
        <property type="protein sequence ID" value="KKO17974.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17974">
        <property type="protein sequence ID" value="KKO17974"/>
        <property type="gene ID" value="BROFUL_03346"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4119"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="1">
        <location>
            <begin position="37"/>
            <end position="388"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO17974.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="398" mass="44786" checksum="D899B43B6E6E4A49" modified="2015-11-11" version="1">MPEEFVINVAQRVKHLPPYLFGRLNALKYEKRRNNIDVIDLGMGNPNDPTPQPVIQKLCEAVQDPRNHRYTVSANGLFNLRREVAKYYERQFAVPLDPDEVVCTIGSKEGISHLCLGLLETGDTVVVPNPAFPIHIHAVNLAGAHVVSVPLTDDEQFLPNLINITKNLNPLPKIIILNFPHNPTAVTVELSFFEEIVPFARKHNIIIVHDFAYCGIAFDGYKPPSFLQVKGAKEVGVEFNTMSKSFNMAGWRLGFCVGNKEIVSTLAKVKGYYDYGIFQPVQIASIIALRECNKYTREQAQIYQDRRDVLCDGLNRIGWNVKKPKASMFVWAPIPEKWRSMGSVDFAYKLINEAEVAVAPGAAFGEQGEGYLRLAIVENELRLKQAIRQIDRALRGKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU34</accession>
    <name>A0A0M2UU34_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03317</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000303">
        <property type="protein sequence ID" value="KKO17994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17994">
        <property type="protein sequence ID" value="KKO17994"/>
        <property type="gene ID" value="BROFUL_03317"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4086"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="62" mass="6579" checksum="D6857F574FE860E6" modified="2015-11-11" version="1">MGVANAKVSFKNRVGFAGAFVMGDQVLLGAIPMEDMDLVIIPKTRTVDINPFSPNIATSIAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU53</accession>
    <name>A0A0M2UU53_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Type I restriction enzyme endonuclease subunit</fullName>
            <shortName evidence="10">R protein</shortName>
            <ecNumber evidence="10">3.1.21.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">BROFUL_02158</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Subunit R is required for both nuclease and ATPase activities, but not for modification.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>Endonucleolytic cleavage of DNA to give random double-stranded fragments with terminal 5'-phosphates, ATP is simultaneously hydrolyzed.</text>
            <dbReference type="EC" id="3.1.21.3"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="10">The type I restriction/modification system is composed of three polypeptides R, M and S.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the HsdR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.21.3" evidence="10"/>
    <dbReference type="EMBL" id="LAQJ01000214">
        <property type="protein sequence ID" value="KKO19115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19115">
        <property type="protein sequence ID" value="KKO19115"/>
        <property type="gene ID" value="BROFUL_02158"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2694"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009035">
        <property type="term" value="F:type I site-specific deoxyribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007409">
        <property type="entry name" value="Restrct_endonuc_type1_HsdR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004473">
        <property type="entry name" value="Restrct_endonuc_typeI_HsdR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040980">
        <property type="entry name" value="SWI2_SNF2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04313">
        <property type="entry name" value="HSDR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18766">
        <property type="entry name" value="SWI2_SNF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00348">
        <property type="entry name" value="hsdR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9 10" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="12" id="KW-0347">Helicase</keyword>
    <keyword evidence="7 10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="4 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 10" id="KW-0680">Restriction system</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="11">
        <location>
            <begin position="261"/>
            <end position="431"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU364115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO19115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1010" mass="116469" checksum="E416E6CC07CA4D5C" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU57</accession>
    <name>A0A0M2UU57_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02163</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000214">
        <property type="protein sequence ID" value="KKO19120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19120">
        <property type="protein sequence ID" value="KKO19120"/>
        <property type="gene ID" value="BROFUL_02163"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2701"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013114">
        <property type="entry name" value="FabA_FabZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30272">
        <property type="entry name" value="PTHR30272"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07977">
        <property type="entry name" value="FabA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="157" mass="17905" checksum="FF6AC4797281FBE6" modified="2015-11-11" version="1">MSQEILIDLRTLDLNKTTVDIETIRAVIPHRYEMEQLNGIIQFDPEQKIIVGYKDISDKEFWIRGHIPGRPLMPGVLMLEAAAQLCTYYYKKTTHDDRFLGFGGIDKVKFRGKVVPGDKLILIAKNKELRSRRAIFDTQGVVDGKLVFEAVIIGMVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUB0</accession>
    <name>A0A0M2UUB0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Probable cytosol aminopeptidase</fullName>
            <ecNumber evidence="8">3.4.11.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Leucine aminopeptidase</fullName>
            <shortName evidence="8">LAP</shortName>
            <ecNumber evidence="8">3.4.11.10</ecNumber>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Leucyl aminopeptidase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">pepA</name>
        <name evidence="10" type="ORF">BROFUL_01663</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>Release of an N-terminal amino acid, Xaa-|-Yaa-, in which Xaa is preferably Leu, but may be other amino acids including Pro although not Arg or Lys, and Yaa may be Pro. Amino acid amides and methyl esters are also readily hydrolyzed, but rates on arylamides are exceedingly low.</text>
            <dbReference type="EC" id="3.4.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 8">
            <text>Release of an N-terminal amino acid, preferentially leucine, but not glutamic or aspartic acids.</text>
            <dbReference type="EC" id="3.4.11.10"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="8">Binds 2 manganese ions per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the peptidase M17 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.11.1" evidence="8"/>
    <dbReference type="EC" id="3.4.11.10" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19628">
        <property type="protein sequence ID" value="KKO19628"/>
        <property type="gene ID" value="BROFUL_01663"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2053"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070006">
        <property type="term" value="F:metalloaminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00433">
        <property type="entry name" value="Peptidase_M17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00181">
        <property type="entry name" value="Cytosol_peptidase_M17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011356">
        <property type="entry name" value="Leucine_aapep/pepB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043472">
        <property type="entry name" value="Macro_dom-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000819">
        <property type="entry name" value="Peptidase_M17_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023042">
        <property type="entry name" value="Peptidase_M17_leu_NH2_pept"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008283">
        <property type="entry name" value="Peptidase_M17_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11963">
        <property type="entry name" value="PTHR11963"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00883">
        <property type="entry name" value="Peptidase_M17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02789">
        <property type="entry name" value="Peptidase_M17_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00481">
        <property type="entry name" value="LAMNOPPTDASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52949">
        <property type="entry name" value="SSF52949"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00631">
        <property type="entry name" value="CYTOSOL_AP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8 10" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7 8" id="KW-0464">Manganese</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 8" id="KW-0645">Protease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CYTOSOL_AP" evidence="9">
        <location>
            <begin position="348"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="280"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="354"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="268"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="273"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="291"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="350"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS00631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="507" mass="55108" checksum="9C1EE226694FBE50" modified="2015-11-11" version="1">MKISVKFGTIKTEDAEILVFYLYEGMKIMDKSLAYCDKALHNSISELIKKKEFIARLNKTIALPTYGKIPAKRILLVGLGKKKEATLDKIRQAAGTTVSIVRDMGISEGVVVVMSSIDISASLSEECQAYVEGARLALYKYHRYKYIPPEEQQELTTLTLFLSNGDAAKTVRNAVTCGQIIADAVSFTRDLINTPSQDKTPVILADYAVKIAKEYGMQCKVISLPELKKLGMGGLVGVSLGSVQSPKFIILDYNARAKNQDTLVFIGKGITFDSGGICLKQAKDMDQMKSDMSGAAAVMGAIMALSKMKAPQRIVGLMPCTENMPGGSAMKPGDIVKFYSGKTAEVVNTDAEGRLILADALAYAENYHPQAVIDLATLTGSCVVALGTVVTGMMGNNEELKKRVQIAGEKSWERVWELPLWEEYQEQIKSDIADIKNVGGPHGGAITAACFLSKFAEKYPWVHLDIAGTAWCEKNGAYTQKGASGVGVRLLVQLVRDWAKFPGKNSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUB4</accession>
    <name>A0A0M2UUB4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01668</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19633">
        <property type="protein sequence ID" value="KKO19633"/>
        <property type="gene ID" value="BROFUL_01668"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007844">
        <property type="entry name" value="AsmA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032712">
        <property type="entry name" value="AsmA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008023">
        <property type="entry name" value="DUF748"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05170">
        <property type="entry name" value="AsmA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13502">
        <property type="entry name" value="AsmA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05359">
        <property type="entry name" value="DUF748"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AsmA" evidence="2">
        <location>
            <begin position="2"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="domain" description="AsmA_2" evidence="3">
        <location>
            <begin position="471"/>
            <end position="674"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="126"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="729"/>
            <end position="761"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="137"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="729"/>
            <end position="746"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="761" mass="83064" checksum="A8EAA5CB95B1102E" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUE1</accession>
    <name>A0A0M2UUE1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="15">Excinuclease ABC subunit A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">BROFUL_01600</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="13">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19668.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19668">
        <property type="protein sequence ID" value="KKO19668"/>
        <property type="gene ID" value="BROFUL_01600"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1979"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009380">
        <property type="term" value="C:excinuclease repair complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006289">
        <property type="term" value="P:nucleotide-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004602">
        <property type="entry name" value="UvrA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041552">
        <property type="entry name" value="UvrA_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041102">
        <property type="entry name" value="UvrA_inter"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17755">
        <property type="entry name" value="UvrA_DNA-bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17760">
        <property type="entry name" value="UvrA_inter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00630">
        <property type="entry name" value="uvra"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9 13" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6" id="KW-0228">DNA excision</keyword>
    <keyword evidence="12" id="KW-0234">DNA repair</keyword>
    <keyword evidence="11" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10" id="KW-0267">Excision nuclease</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 13" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <keyword evidence="7" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="ABC transporter" evidence="14">
        <location>
            <begin position="357"/>
            <end position="608"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KKO19668.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="828" mass="92100" checksum="C6DD63D4105B170C" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUG3</accession>
    <name>A0A0M2UUG3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ABC transporter related protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01625</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19693.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19693">
        <property type="protein sequence ID" value="KKO19693"/>
        <property type="gene ID" value="BROFUL_01625"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019196">
        <property type="entry name" value="ABC_transp_unknown"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09822">
        <property type="entry name" value="ABC_transp_aux"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="78"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="541"/>
            <end position="563"/>
        </location>
    </feature>
    <feature type="domain" description="ABC_transp_aux" evidence="2">
        <location>
            <begin position="108"/>
            <end position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19693.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="567" mass="63259" checksum="0DA124D00891033D" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUN8</accession>
    <name>A0A0M2UUN8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03097</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000286">
        <property type="protein sequence ID" value="KKO18199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18199">
        <property type="protein sequence ID" value="KKO18199"/>
        <property type="gene ID" value="BROFUL_03097"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="133" mass="15341" checksum="8B54A18EF43CBE83" modified="2015-11-11" version="1">MLWLNKELLEKNIFNAADRTATNKNITKALLKLFKPENETTMNALLDHSISIADDYLTHGNEYSVFKEPKFLEKGSDLNTFLNWEQLGKGKDYTPLLDNLIAQYKIVLKIGIHGQPKYRDMIRDIILANDTIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUV0</accession>
    <name>A0A0M2UUV0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Carbonic anhydrase</fullName>
            <ecNumber evidence="2">4.2.1.1</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">cynT</name>
        <name evidence="2" type="ORF">BROFUL_02546</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the beta-class carbonic anhydrase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.1" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18766">
        <property type="protein sequence ID" value="KKO18766"/>
        <property type="gene ID" value="BROFUL_02546"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3161"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004089">
        <property type="term" value="F:carbonate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1050.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001765">
        <property type="entry name" value="Carbonic_anhydrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036874">
        <property type="entry name" value="Carbonic_anhydrase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11002">
        <property type="entry name" value="PTHR11002"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00484">
        <property type="entry name" value="Pro_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00947">
        <property type="entry name" value="Pro_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53056">
        <property type="entry name" value="SSF53056"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="263" mass="29582" checksum="A096FF2D6E2D8BCE" modified="2015-11-11" version="1">MEVGNIFRHLLVHNEAFVKNTEVTKFLAYATHQNPYITLLTCSDSRVQGDILGKDIFNKVFIIRNAGNQFAVNRGSIEYSLFVLKTPVMLVLGHTDCGAVKFATHACVTQSKEIVNLSKSVDHLMKTDYSSLSREIKTEMLPLTIPIERGIPDLKKIQNEMKELAFLSQTNVDYQIEKALKYYGERVKEGKLTIIGGIYDFVGAYSNQLGRVLITNINGIINLIDLQESARSIIKRMPNYDENSGGYKITSELISEKVTRIAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV23</accession>
    <name>A0A0M2UV23_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Glycerol-3-phosphate acyltransferase</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Acyl-PO4 G3P acyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Acyl-phosphate--glycerol-3-phosphate acyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">G3P acyltransferase</fullName>
            <shortName evidence="10">GPAT</shortName>
            <ecNumber evidence="10">2.3.1.275</ecNumber>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Lysophosphatidic acid synthase</fullName>
            <shortName evidence="10">LPA synthase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">plsY</name>
        <name evidence="11" type="ORF">BROFUL_01630</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>an acyl phosphate + sn-glycerol 3-phosphate = a 1-acyl-sn-glycero-3-phosphate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:34075"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57597"/>
            <dbReference type="ChEBI" id="CHEBI:57970"/>
            <dbReference type="ChEBI" id="CHEBI:59918"/>
            <dbReference type="EC" id="2.3.1.275"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="10">Lipid metabolism; phospholipid metabolism.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Probably interacts with PlsX.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell membrane</location>
            <topology evidence="10">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the PlsY family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.275" evidence="10"/>
    <dbReference type="EMBL" id="LAQJ01000170">
        <property type="protein sequence ID" value="KKO19652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19652">
        <property type="protein sequence ID" value="KKO19652"/>
        <property type="gene ID" value="BROFUL_01630"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2011"/>
    <dbReference type="UniPathway" id="UPA00085"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043772">
        <property type="term" value="F:acyl-phosphate glycerol-3-phosphate acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01043">
        <property type="entry name" value="PlsY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003811">
        <property type="entry name" value="G3P_acylTferase_PlsY"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30309">
        <property type="entry name" value="PTHR30309"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02660">
        <property type="entry name" value="G3P_acyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01207">
        <property type="entry name" value="G3P_acyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00023">
        <property type="entry name" value="TIGR00023"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="2 10" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="6 10" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="8 10" id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword evidence="9 10" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 10" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="52"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="83"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="115"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="166"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO19652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="214" mass="23066" checksum="421C864E8B925E8C" modified="2015-11-11" version="1">MEAICGPIISYFIGSIPFGFLIAKLAKGIDIRQVGSGNPGATNVARVMGKPYGILVFILDMLKGFFPVFIFDHYLAGHAHPLLLILCGVGVICGHAFPVFLNFKGGKAVATGCGVFLWLAPLPLIISVAVWLCVVFTTRYISLGSILSPPVLAICLLVLGKDPLGQGLYLTIFSLFISILIILRHKSNIRRLFNGTENKIGKKTKTNNSPTSHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV78</accession>
    <name>A0A0M2UV78_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Two-component sensor kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01565</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000164">
        <property type="protein sequence ID" value="KKO19717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19717">
        <property type="protein sequence ID" value="KKO19717"/>
        <property type="gene ID" value="BROFUL_01565"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1928"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Histidine kinase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="86" mass="9408" checksum="B432DD4B2472B82F" modified="2015-11-11" version="1">MPRAIIELGAKQDDEKPVYFVRDNGAGFDMAYVNKLFGAFQRLHPKAEFDGTGIGLATVQRIIHRHGGQIWAEGAVGQGATFSFTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV91</accession>
    <name>A0A0M2UV91_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01554</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000162">
        <property type="protein sequence ID" value="KKO19732.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19732">
        <property type="protein sequence ID" value="KKO19732"/>
        <property type="gene ID" value="BROFUL_01554"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1917"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001440">
        <property type="entry name" value="TPR_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00515">
        <property type="entry name" value="TPR_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="7"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0802">TPR repeat</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="44"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="76"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="110"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="144"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="178"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="212"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="246"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="280"/>
            <end position="313"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19732.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="319" mass="36226" checksum="4D58E70C31BE8D2D" modified="2015-11-11" version="1">MSFCVIESRRCLSDNFNDMYYRLTTGAFLSVTFVRNYWRKGLLFFLIAALALPCCRAMAVTMQGKIYKTTSKKHSARKLIKAGNAHYKRGRYERAVKAYNNSIARYPGYFEAWDGLGNALYCQGNYGMAVQAYEKALTINPGVSSTRINKGIALYKQGKNEEALKVYEKVLASEPGLASAWYNKGIALIALYRYNEAMYAFDKAMEIDPKDDLAWHGKGYVLILFGRYNEALQFFGKAVQADPKRAWAWNNMGITLNRLGMHEEAIKAFDKAIAINPKNARAWHNKANSLYNLGKYDESVKFYNKAVELDPLLYAGAKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVA9</accession>
    <name>A0A0M2UVA9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02318</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18926">
        <property type="protein sequence ID" value="KKO18926"/>
        <property type="gene ID" value="BROFUL_02318"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034756">
        <property type="entry name" value="T2SSM_b"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10741">
        <property type="entry name" value="T2SSM_b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="195" mass="22544" checksum="BA2CE3FA3C22A010" modified="2015-11-11" version="1">MRRLSELFYKFKLRERVLLIAAIIVLAYIGIDKIAIGPFFKSINETKERLETQRQLLKKYYSFVANKKQYETQLVDLEQYYAEYQGKFLSEETEELASAKLQEIINNLATKNGLVVASSTALKKEILNKKPYLIELSINFEISNLDNSQKLQKFLYDIEYNDEKLLFLDNLKIKTLGLNIAKGVTISSTLKAIAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVH9</accession>
    <name>A0A0M2UVH9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Ketoacyl_synth_N domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02285</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO18991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18991">
        <property type="protein sequence ID" value="KKO18991"/>
        <property type="gene ID" value="BROFUL_02285"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014030">
        <property type="entry name" value="Ketoacyl_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00109">
        <property type="entry name" value="ketoacyl-synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ketoacyl_synth_N" evidence="1">
        <location>
            <begin position="26"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="197" mass="21518" checksum="B42E5859FE91BD2B" modified="2015-11-11" version="1">MKPVITGVSKISSNNIEYAASGLKDSIRQMRFVNSLEQLAVTAVGIMLNDAKIDIPIGNSNVGLFVGIDDSIEDIKDEYFEGILNEGILGASPLLFPYTTPNSLAAQVSIAFDIRGENITIPIQYSYRTVLEYAVECITEKYTGTAIAGGIRVQDKNLSIGNGRYVAEFFLLEDVDSARKRGATIYNNAWEGLCESF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVN0</accession>
    <name>A0A0M2UVN0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01377</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000142">
        <property type="protein sequence ID" value="KKO19902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19902">
        <property type="protein sequence ID" value="KKO19902"/>
        <property type="gene ID" value="BROFUL_01377"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1699"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010293">
        <property type="entry name" value="Sbt_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40400">
        <property type="entry name" value="PTHR40400"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05982">
        <property type="entry name" value="Sbt_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="67"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="95"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="131"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="172"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="235"/>
            <end position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="265" mass="28815" checksum="6ECE007F647C39CA" modified="2015-11-11" version="1">MDVDLIVNNLVHPPVLFFFLGMIAAFCKSDLKIPEPLPKLFSLYLLLAIGFHGGVELRKTGITHEVVFALSAAILMSIIVPLYAFLILRLKLDVYNAAAIAATYGSISAVTYITAVTFLQTLGLVPGGYMVAALALMESPAIVIGIILARLFAPKKEKEENEFSWLEVFREAFLNGSVLLLTGSLLIGWASGEEGWDTLKPFTKDIFKGMLSFFLLDMGLLAAKRIGDLKSAGFFLPPFAILMPVFNGCVGIVIARLISLQPENA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVN3</accession>
    <name>A0A0M2UVN3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Formate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BROFUL_01178</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000126">
        <property type="protein sequence ID" value="KKO20103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20103">
        <property type="protein sequence ID" value="KKO20103"/>
        <property type="gene ID" value="BROFUL_01178"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1457"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006656">
        <property type="entry name" value="Mopterin_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006963">
        <property type="entry name" value="Mopterin_OxRdtase_4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027467">
        <property type="entry name" value="MopterinOxRdtase_cofactor_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019574">
        <property type="entry name" value="NADH_UbQ_OxRdtase_Gsu_4Fe4S-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00037">
        <property type="entry name" value="Fer4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04879">
        <property type="entry name" value="Molybdop_Fe4S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00384">
        <property type="entry name" value="Molybdopterin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10588">
        <property type="entry name" value="NADH-G_4Fe-4S_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00926">
        <property type="entry name" value="Molybdop_Fe4S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00929">
        <property type="entry name" value="NADH-G_4Fe-4S_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51839">
        <property type="entry name" value="4FE4S_HC3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51669">
        <property type="entry name" value="4FE4S_MOW_BIS_MGD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00551">
        <property type="entry name" value="MOLYBDOPTERIN_PROK_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 8" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="6 8" id="KW-0408">Iron</keyword>
    <keyword evidence="7 8" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="9">
        <location>
            <begin position="3"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S His(Cys)3-ligated-type" evidence="12">
        <location>
            <begin position="83"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="10">
        <location>
            <begin position="142"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="10">
        <location>
            <begin position="186"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S Mo/W bis-MGD-type" evidence="11">
        <location>
            <begin position="223"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="230"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="233"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="237"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="265"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO20103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="355" mass="39089" checksum="33C1105FBD1E777D" modified="2015-11-11" version="1">MIPKIKLTIDGKTVEVNKGKTVLQAANAVGIQIPTLCHDPRLEPFAACRVCMVEVERGKSSALITSCSTEATDGMVICTNSDKVLKTRKMVLELILSDHPKDCMTCDKCGACTLQDLAYEYQVRDSRFFEKPDGGVTEDENPAIQQDTSKCILCGRCVRICAEVQQDYAIDFKHRGFTTETGLPLGKPRRETSCVLCGQCVSTCPVGSLVEKQAVGKARDWELKQVKTTCAYCGVGCTMYLNVKGNEVVKVTSKTGSIPNDGNLCVKGRFGYDFVHHPDRLKQPLIKKNGRFEEATWDEAFDFIAGKLNDIKARYGPDTIGVFSSSRCTNEENYLAMKFARAAIGTNNVDQCART</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVN8</accession>
    <name>A0A0M2UVN8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01382</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000142">
        <property type="protein sequence ID" value="KKO19907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19907">
        <property type="protein sequence ID" value="KKO19907"/>
        <property type="gene ID" value="BROFUL_01382"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013105">
        <property type="entry name" value="TPR_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07719">
        <property type="entry name" value="TPR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644108" evidence="2">
        <location>
            <begin position="27"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="102"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="136"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="175"/>
            <end position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="246" mass="27939" checksum="C9ED5CF545B3A9BB" modified="2015-11-11" version="1">MKYYYVTILLSLLPVAFMLGCSRNDATSPDIGIIYKSGSISGETANDSQNSQKLEIQQLNDKLRAMSNNDLFQFALTCGNQGNYSAALMAFNTLLEKDKNYPDIYYYQGLLYRDMGLQDEAICAFQTAITQNPDSAEAHYNLGYAYRCKGLHHEAIPQYQKSLELLSEDKTKQKASVHYNLGFSYFSHGMIDDAIREFKTALAYKPKDRETHQKLGIAYTAKGWTDKAKDEFSLYHDHDKPAKKIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVV5</accession>
    <name>A0A0M2UVV5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01041</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20193">
        <property type="protein sequence ID" value="KKO20193"/>
        <property type="gene ID" value="BROFUL_01041"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1303"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="222" mass="25317" checksum="E870B5E34ED1C82F" modified="2015-11-11" version="1">MKQKLTIASLIKEAKAFCEQESKFDNRDLFGITDGKAVGTFIEHKFQDFLSSKYEYIIGSSANGIDMPSEDLNTDIKVTSIKQPQSSCPFRNARQKIYGLGYNLLVFVYDKNDDPVTKTARLNFVSCSFIDKNRTADYQVTRTIRQMLENNANADDIIAYLTDRNLPTDEITINQLADEILHTKPKQGYLTISNALQWRLQYGRIVELVENVDGIIRIISKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVW6</accession>
    <name>A0A0M2UVW6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">EAL domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01568</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000164">
        <property type="protein sequence ID" value="KKO19720.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19720">
        <property type="protein sequence ID" value="KKO19720"/>
        <property type="gene ID" value="BROFUL_01568"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1931"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01948">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001633">
        <property type="entry name" value="EAL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035919">
        <property type="entry name" value="EAL_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00563">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00052">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141868">
        <property type="entry name" value="SSF141868"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50883">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="EAL" evidence="1">
        <location>
            <begin position="1"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19720.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="152" mass="17055" checksum="33B7999012AB3BFA" modified="2015-11-11" version="1">MVTSILQKTGLDPQFLGIEITESIAMQDMETTIGKLERLSSMGIQISIDDFGTGFSSLYYLKKFPIHKLKISQHFVSGIATDQNDKVIVSSVIALAQSLKFKVVAEGVENEEQLVFLKQRQCDEMQGYLFCKPLPADEFGKMEMRHNVLCDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW02</accession>
    <name>A0A0M2UW02_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01531</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000158">
        <property type="protein sequence ID" value="KKO19755.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19755">
        <property type="protein sequence ID" value="KKO19755"/>
        <property type="gene ID" value="BROFUL_01531"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1892"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="36"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19755.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="305" mass="35100" checksum="A856BA3088AD4F62" modified="2015-11-11" version="1">MVFTYQFRQYQRLLTYKNSVRKGTLNADIIKKTPIPLNARPSERSRSKPPVKKPGLFGKIQEAAVNRKSMQRFRSTIARHFESARLASSTGLGTGGFNTAGMANGNVNPIDLDEIHKNIIDQIKPEVNLKNLIKGRIQIAPWTGWKIDERYCEPVMAAPTFNQPMYEAVRDLSVEWLLPGVEEIKQNTVSLLITNKKFVESFMAGLNHEMARELLWREYPTDQRGTCFRQFWDVRGYVDNDPTDEAAMETMAKDWLQEKGVNFNELSDEDKPLALQFARDELFKNKVNDIIPITDWKKELGGHHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW14</accession>
    <name>A0A0M2UW14_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01523</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000157">
        <property type="protein sequence ID" value="KKO19765.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19765">
        <property type="protein sequence ID" value="KKO19765"/>
        <property type="gene ID" value="BROFUL_01523"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19765.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="94" mass="10948" checksum="F58E1010713066EF" modified="2015-11-11" version="1">MEASRAYWCSYPSPDHYQEGKSEDEKAFLVAEILLELGRINPNEDAHRSLKREDVAEELRKIIREIKETILPSIQISDDLIKAYVLKAFRESLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW43</accession>
    <name>A0A0M2UW43_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Two-component sensor kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02600</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000239">
        <property type="protein sequence ID" value="KKO18719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18719">
        <property type="protein sequence ID" value="KKO18719"/>
        <property type="gene ID" value="BROFUL_02600"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="3">
        <location>
            <begin position="52"/>
            <end position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="267" mass="30073" checksum="BA75F36509BF6819" modified="2015-11-11" version="1">MIQYLLGAAIASVIFIPLVVFSIRRAVSKTREFEKRAMHSERLAFVGTLAGGLAHEIKNPLSTLSINLQLLMEDVQSMNGEKSKKVYTRIHALQKEVQRLEDILNDFLRYAKGQKLELENCNINDVVDEVVDFITPEIKQKQIQLLKSYDTHVPFCQLDVNLVKQAILNVIINAEQAMEHGGELMIRTSGDKKFIQIDITDTGAGMPKDMLDKIFQVYYSTKKTGTGLGLPTAKRIIEEHKGTISVQSEENKGSNFSIKLPIDLRID</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW68</accession>
    <name>A0A0M2UW68_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Trk system potassium uptake protein TrkA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_01461</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000150">
        <property type="protein sequence ID" value="KKO19820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19820">
        <property type="protein sequence ID" value="KKO19820"/>
        <property type="gene ID" value="BROFUL_01461"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1806"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015079">
        <property type="term" value="F:potassium ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1450">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006036">
        <property type="entry name" value="K_uptake_TrkA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006037">
        <property type="entry name" value="RCK_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036721">
        <property type="entry name" value="RCK_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003148">
        <property type="entry name" value="RCK_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02080">
        <property type="entry name" value="TrkA_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02254">
        <property type="entry name" value="TrkA_N"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00335">
        <property type="entry name" value="KUPTAKETRKA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF116726">
        <property type="entry name" value="SSF116726"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51202">
        <property type="entry name" value="RCK_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51201">
        <property type="entry name" value="RCK_N"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0406">Ion transport</keyword>
    <keyword evidence="4" id="KW-0520">NAD</keyword>
    <keyword evidence="3" id="KW-0630">Potassium</keyword>
    <keyword evidence="2" id="KW-0633">Potassium transport</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="RCK N-terminal" evidence="5">
        <location>
            <begin position="2"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="domain" description="RCK C-terminal" evidence="6">
        <location>
            <begin position="141"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="domain" description="RCK N-terminal" evidence="5">
        <location>
            <begin position="232"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="domain" description="RCK C-terminal" evidence="6">
        <location>
            <begin position="367"/>
            <end position="448"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00017378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19820.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="453" mass="49126" checksum="32B4920FC08D23C5" modified="2015-11-11" version="1">MKILIIGAGAVGFNLAKQLSKEGHDISVIEKSHELVKRISEKLDVSVVSGSASSLAVLGEAGIKDTDMVLAVTNSDEINMVVCMIAHHYGVKTKIARIRSPEFSDEQPVMHQNGFHIDHVVNPEKITVDSILNIIGTPGATYVADFTEGDILLRGFNVPDDAPIAGKKLSELKEVESTDSFLIVAIQRNDEMVIPTGETKILPHDTIFVLVAKAALPYFLPMVNRRADEVEKVVIYGVNRASIELAKKLEAQKIQVTMIESDSEKTQQAATVLDKTVILQGNALDIDLLKEASIDIADFFVAVSENEQANILSALLAKRLGAKKAIVLTVDPAFVPIINSLGMDTVINPRLITVGSILQHIRRGHTLSVVKFQQSDAEAIELVAVEGSKIVGKPLREIPFPQGSILGAIVREGAMQIPAGNTIINPDERVIVFALPHAVEKVQSLFISKKDRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW69</accession>
    <name>A0A0M2UW69_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00945</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000116">
        <property type="protein sequence ID" value="KKO20313.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20313">
        <property type="protein sequence ID" value="KKO20313"/>
        <property type="gene ID" value="BROFUL_00945"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1192"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="215"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="159"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20313.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="479" mass="53798" checksum="FA9FD64843A4A004" modified="2015-11-11" version="1">MPDWLRRLSPIGFAIAVLLVGCSTSSVFISYTTRMNSLLDGVKSRKFDYALKVLDKYGKGKDKILYRLERGRLAQIKNDLQVSMKDYATAMEAIQQREDKAIIRASDMGALTAAFLTNDNAAPYQGEGYEKVFLHQFQAFNYLENKDIEGAGVEVRRANLEQNRALEMHEKEVGRAEEKARERSLETEPAYASLNSAYRTMDDSAGKVKNSFQNAYTFYLSGIVYELLNQPNDAYIDYKKALQIFPENTYLQHDVMRLAKALGMNQELNEYASRFEKIQSEDEEGIGNANGGELVVLFENGFVPQKREIKVPIPTPNGFLAIAFPVYRAKWPGTEPLSLSEPERKSVFGETEPLCYVQALAVKALKEKVAGMVVRHLLRSATKAAFQYQAKDSGGSVGTILSSFYTVFSEKADLRSWLTLPQDVQIMRRHLPAGVHHLHAEHKASGAFSDVDVTINQNGKTILRIIRIGPVMYTTVIAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW86</accession>
    <name>A0A0M2UW86_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Two-component sensor kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00965</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000116">
        <property type="protein sequence ID" value="KKO20333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20333">
        <property type="protein sequence ID" value="KKO20333"/>
        <property type="gene ID" value="BROFUL_00965"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007891">
        <property type="entry name" value="CHASE3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05227">
        <property type="entry name" value="CHASE3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="domain" description="CHASE3" evidence="2">
        <location>
            <begin position="39"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="221" mass="25983" checksum="3D56DB7DDA3D3AD9" modified="2015-11-11" version="1">MLSGYLTIVMLMMVMSFYLIYRLNYLNKVTDSIMRSDIPFIENGEKLVDCFLEQVRNEKKYLITNDNAFRDLFDQKKKEFLERLKYLEESIADRGESGGIQQTKELYKKYLSLVSKEIVLMGQNEAVSSDTRYKEEKKKTLDQLTESIHKLILVTQTELIKKIELLQKVGYRSTDVPCHYPVCCSVWSGFRLLFHPEHMLSYKNSQGCDRAYRSWGFKSSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWE0</accession>
    <name>A0A0M2UWE0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02485</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18824.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18824">
        <property type="protein sequence ID" value="KKO18824"/>
        <property type="gene ID" value="BROFUL_02485"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18824.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="280" mass="32764" checksum="528503F199EF2BD5" modified="2015-11-11" version="1">MDSFQKIIQECNNTTLNNQQKVGIKVSKKHVINTLNYINFQDGVVYINFKHVKHDYIMTLQAKPQPCIEDHVDCLWVEPVTSKQKLNSYEYLDFILRDGQKLILIKGGVEEIYESGIRFKLPETCLEFNYRKVKRNSGEGIQVDFIQNGAVFQGLLLDFSAVSFRVKITAVPPQSFWLISPNNMVEVVLKKDQDIFYSGKCNIIKQSSGQKTRSFVLRPVKNLMQRFRSKEFRSPRHKLNLCQILFSTIRLFRKWSIWRLKTSPALGFLSRNIRKTPCFW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWE6</accession>
    <name>A0A0M2UWE6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02005</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000202">
        <property type="protein sequence ID" value="KKO19291.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19291">
        <property type="protein sequence ID" value="KKO19291"/>
        <property type="gene ID" value="BROFUL_02005"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2496"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043571">
        <property type="term" value="P:maintenance of CRISPR repeat elements"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.100.10.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002729">
        <property type="entry name" value="CRISPR-assoc_Cas1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042211">
        <property type="entry name" value="CRISPR-assoc_Cas1_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01867">
        <property type="entry name" value="Cas_Cas1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="3" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19291.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="97" mass="10593" checksum="6CD1AC2D8C88A5BD" modified="2015-11-11" version="1">MKRHLNTLFVTTQGAYLAKEGETVVVKVEGEVKLTIPVHTLGGIVCFGQVSCSPYLMGFCAEKEVAISFLTETGDFLAKVQGPVSGNVLLRREQYRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWI9</accession>
    <name>A0A0M2UWI9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">DNA polymerase III subunit gamma/tau</fullName>
            <ecNumber evidence="4">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">dnaX</name>
        <name evidence="7" type="ORF">BROFUL_01047</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="4">DNA polymerase III contains a core (composed of alpha, epsilon and theta chains) that associates with a tau subunit. This core dimerizes to form the POLIII' complex. PolIII' associates with the gamma complex (composed of gamma, delta, delta', psi and chi chains) and with the beta chain to form the complete DNA polymerase III complex.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the DnaX/STICHEL family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20197">
        <property type="protein sequence ID" value="KKO20197"/>
        <property type="gene ID" value="BROFUL_01047"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1309"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009360">
        <property type="term" value="C:DNA polymerase III complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd18137">
        <property type="entry name" value="HLD_clamp_pol_III_gamma_tau"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001270">
        <property type="entry name" value="ClpA/B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008921">
        <property type="entry name" value="DNA_pol3_clamp-load_cplx_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022754">
        <property type="entry name" value="DNA_pol_III_gamma-3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012763">
        <property type="entry name" value="DNA_pol_III_sug/sutau_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045085">
        <property type="entry name" value="HLD_clamp_pol_III_gamma_tau"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12169">
        <property type="entry name" value="DNA_pol3_gamma3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00300">
        <property type="entry name" value="CLPPROTEASEA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48019">
        <property type="entry name" value="SSF48019"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02397">
        <property type="entry name" value="dnaX_nterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0235">DNA replication</keyword>
    <keyword evidence="4" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="AAA" evidence="6">
        <location>
            <begin position="37"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="513"/>
            <end position="532"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="513"/>
            <end position="527"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006360"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU364063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="558" mass="62555" checksum="0EB6E02A2B13504D" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWS8</accession>
    <name>A0A0M2UWS8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Thiol-disulfide oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">ccsX_1</name>
        <name evidence="5" type="ORF">BROFUL_02352</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18959">
        <property type="protein sequence ID" value="KKO18959"/>
        <property type="gene ID" value="BROFUL_02352"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016209">
        <property type="term" value="F:antioxidant activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000866">
        <property type="entry name" value="AhpC/TSA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017937">
        <property type="entry name" value="Thioredoxin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00578">
        <property type="entry name" value="AhpC-TSA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00194">
        <property type="entry name" value="THIOREDOXIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644056" evidence="3">
        <location>
            <begin position="30"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="domain" description="Thioredoxin" evidence="4">
        <location>
            <begin position="12"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="163" mass="17915" checksum="793B1FB463FD10BB" modified="2015-11-11" version="1">MNKKIGKYFVLISVFSAMIFFITSAISHAGDSVNKIKLADLNALIEGNKGKVVIVDLWATWCPPCRKEIPGFINLYNKHRSKGVEIIGIAFDENGVEVVPPAVKKMGINYPVYLGGGDIAEAHDLQAYPTTLVYGKDGKIASRHVGFVSEKEFDDEIGMLLKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWT9</accession>
    <name>A0A0M2UWT9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RNA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02362</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18969">
        <property type="protein sequence ID" value="KKO18969"/>
        <property type="gene ID" value="BROFUL_02362"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="SSF54928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RRM" evidence="2">
        <location>
            <begin position="1"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="74"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="104" mass="10852" checksum="5D9447DDC056232D" modified="2015-11-11" version="1">MNIFVGNLSHDATEDDLRQAFEAFGQVKSVKVIKDLFSGASKGFGFVEMQAKAEAQSAINGLNGKDLKGRMLNVNEARPRPEGGRGGGGGGGRSGGGRPGGRRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWZ7</accession>
    <name>A0A0M2UWZ7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01165</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000126">
        <property type="protein sequence ID" value="KKO20090.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20090">
        <property type="protein sequence ID" value="KKO20090"/>
        <property type="gene ID" value="BROFUL_01165"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20090.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="380" mass="41611" checksum="9062A81D45EDB468" modified="2015-11-11" version="1">MKKNTRYTIPQRSCNHVPLHEGDGQNPCKKGNGLYGTTILRCTLLIAGLVFPLLSRGALSDTAKDTTPPVVHTDVTPAVVHDTHLFLSGEACDNNGIARVLVNGCPLEIHTGRRVSFNHLLPLREGRNIVTVQAIDASGNASVVSPVKITRKAFDLPETVSRYAVALLPVKSSPALDMPGESIHSLFLKAFGEEPQRFHFVERDPARLEGILREQRISKIGQISPETVIKIGKIIAAEGLFLVTIDEDVNGIGITLRLVDTETGRIRAQASVHDADNGMKNLEWLIYGLSLKIKRQLPAAQGNVIRISENGFYVNTGAAHGIEVGMKLLLFREIREGNFVLKEPLDTIARVERVLPHICFVTVSREGISRVEKGDLVLAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX10</accession>
    <name>A0A0M2UX10_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02257</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000223">
        <property type="protein sequence ID" value="KKO19034.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19034">
        <property type="protein sequence ID" value="KKO19034"/>
        <property type="gene ID" value="BROFUL_02257"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018841">
        <property type="entry name" value="DUF2442"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10387">
        <property type="entry name" value="DUF2442"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19034.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="89" mass="10722" checksum="09C8B44553E353FC" modified="2015-11-11" version="1">MKLQKRGKTISKAEVLNISTHGMWLYANKKEYFLSYKEYPWFEDAKVKDICNVELLNGYHLYWPDLDIDLETDSLENPEKYPLTFRKEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX19</accession>
    <name>A0A0M2UX19_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02230</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19049">
        <property type="protein sequence ID" value="KKO19049"/>
        <property type="gene ID" value="BROFUL_02230"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018759">
        <property type="entry name" value="BBP2_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10082">
        <property type="entry name" value="BBP2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644060" evidence="1">
        <location>
            <begin position="28"/>
            <end position="412"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="412" mass="47597" checksum="F3B694BA1CB7E1DC" modified="2015-11-11" version="1">MKMNNLVRYLKKVISIACLWIVICVTAFSSAYSSDDVDDNGLILSTTRFLDSLSYNYKGFEMQVAGVSIGEEYDDNVTFSKDDRKEDFITSLGLGLSAKYEGKLRSLELRGNIIGRIFSQNSDFTNLTEDLNVTFKNEFSRYSRMSVRNKFEHSDEPLFFREDYYTQQFGRGQGRFEYFQNDFYIDYARDVTKQLTLIAKYNNVIDLLSGQDYQDSLLNKAGVEAGYIFSSTTTSLFSYDFANRRFQDESHASIHTVTTGIKQFITEKLAFDGRTGLNYIDSFDNDHFTKPVFMTSLIYQKDTDTIARLSFEKKHETSRYEEDIFDNWRTTASVSRQLLERLRGSLSVFYGEGEYLILDTKNKLLGANSAFVYDIARNLKGNFTYTFTRSDDDPGTFYYTKNTVFFGLTAEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX92</accession>
    <name>A0A0M2UX92_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative transporter protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00779</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000099">
        <property type="protein sequence ID" value="KKO20492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20492">
        <property type="protein sequence ID" value="KKO20492"/>
        <property type="gene ID" value="BROFUL_00779"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022324">
        <property type="entry name" value="Bacilysin_exporter_BacE_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010290">
        <property type="entry name" value="TM_effector"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05977">
        <property type="entry name" value="MFS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01988">
        <property type="entry name" value="EXPORTERBACE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="55"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="82"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="107"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="141"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="172"/>
            <end position="191"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="216" mass="23976" checksum="6E4408E8CB4E6B39" modified="2015-11-11" version="1">MGRVIGITEVFRNRNFLKLWIGQIVSALGDRFNQMALLGLMIKKGGNVGQELSKITFWSILPFFVFSLFSGVLSDRWSRKRILIGSDIARIFLVCSMPWVIRDPACVAPAYPVIFAIGIFTCLFSPAKFSIIPNLVENRHLLIANSLIASSALLSVLAGTALGGIIFDSMGFQASLYLNAATYLFSACALWKLTVNEKKRPAGRAWPLFLRISRRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX93</accession>
    <name>A0A0M2UX93_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01134</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20175">
        <property type="protein sequence ID" value="KKO20175"/>
        <property type="gene ID" value="BROFUL_01134"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019867">
        <property type="term" value="C:outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004658">
        <property type="entry name" value="OMP_Slp"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37530">
        <property type="entry name" value="PTHR37530"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03843">
        <property type="entry name" value="Slp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004982">
        <property type="entry name" value="SlP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="197" mass="23025" checksum="EDC27C60B152CB8D" modified="2015-11-11" version="1">MVKETGKAFVSSYGMPIILFLFMASCAPVISKQVRDQVRPEMTFSAVFRDPEGYKGQMIVLSGVIVSAENTKEGTLLQIVQRPAGFRGQPKDVDTTEGRFLALDSRYLDTYVYAKDREVTVAGEVQGKRTLPLDKTEYTYPMIQVKELYLWPVIEHRDYSPYPYYYRHPFFYYDDYWWWQPYPADKRKCEKSGKSKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXF6</accession>
    <name>A0A0M2UXF6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Translational regulator CsrA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">csrA</name>
        <name evidence="3" type="ORF">BROFUL_02132</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'-UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer; the beta-strands of each monomer intercalate to form a hydrophobic core, while the alpha-helices form wings that extend away from the core.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the CsrA/RsmA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19149">
        <property type="protein sequence ID" value="KKO19149"/>
        <property type="gene ID" value="BROFUL_02132"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2659"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048027">
        <property type="term" value="F:mRNA 5'-UTR binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044781">
        <property type="term" value="P:bacterial-type flagellum organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006402">
        <property type="term" value="P:mRNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045947">
        <property type="term" value="P:negative regulation of translational initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:1902208">
        <property type="term" value="P:regulation of bacterial-type flagellum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006109">
        <property type="term" value="P:regulation of carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.4380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00167">
        <property type="entry name" value="CsrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003751">
        <property type="entry name" value="CsrA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036107">
        <property type="entry name" value="CsrA_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34984">
        <property type="entry name" value="PTHR34984"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02599">
        <property type="entry name" value="CsrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117130">
        <property type="entry name" value="SSF117130"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00202">
        <property type="entry name" value="csrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1005">Bacterial flagellum biogenesis</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0678">Repressor</keyword>
    <keyword evidence="1 2" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2" id="KW-0810">Translation regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="90" mass="10029" checksum="E67EB74578D9EAE9" modified="2015-11-11" version="1">MLILTRKLGESITIGEEIRITVVDCQGKQVKLGIVAPKEVKVHREEIYEKIQEENMKAAKVSKQALIEVAQSMKKKEKKSGNSSKDTSSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXH8</accession>
    <name>A0A0M2UXH8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_01598</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19666">
        <property type="protein sequence ID" value="KKO19666"/>
        <property type="gene ID" value="BROFUL_01598"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022791">
        <property type="entry name" value="L-PG_synthase/AglD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03706">
        <property type="entry name" value="LPG_synthase_TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00374">
        <property type="entry name" value="TIGR00374"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="104"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="157"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="218"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="245"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="271"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="294"/>
            <end position="317"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="349" mass="38953" checksum="AAD04A3D4FFC357F" modified="2015-11-11" version="1">MVIYQKYRMGTSEKRLAGCELLVHHPNDHFNAAGVRREGDPLARIAVAYQTHFGAQFVVGYLHRFYGEQRSPRAVGEVLRPFILTKKENIKFSTSFATVIMERIFDMLGLILFTVVVIALLPHPSAPQPNTLASVSANQVGVVNESILPSLKKWTEVFAALGVITLASLFSVVMKPDFFRQLLSKFCFFLPHTLKDRILGMYESFVYGLKILEDKTQAGWAMALSIFIWILGGAEIYLLGFSFHMHLPFVAACLVAVCLALAVALPQAPGYIGVFHIAVLKSLHLFGIETTAAQSYAIVLWAISILPSTIMGFLFLWREGIAFREVVKLEGEIIEGKLEEMEGVTREIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXN4</accession>
    <name>A0A0M2UXN4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00967</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000116">
        <property type="protein sequence ID" value="KKO20335.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20335">
        <property type="protein sequence ID" value="KKO20335"/>
        <property type="gene ID" value="BROFUL_00967"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="110"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20335.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="146" mass="16500" checksum="5DD0C536D172D201" modified="2015-11-11" version="1">MKKIMGKEMMIRVSIKHSGVLCFFAAILMYNTGCVCSARKELNAKNKEMENINLALHFKEKTIADLLDRLSMKDQEIGRLADELQSARVAIDDLKSDIEKLREIDVQVEEKKKEVDNSIAESIPRPVPAGTRETEPTPARAQNDNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXS7</accession>
    <name>A0A0M2UXS7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00640</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20657">
        <property type="protein sequence ID" value="KKO20657"/>
        <property type="gene ID" value="BROFUL_00640"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.809"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025737">
        <property type="entry name" value="Phenol_MetA_deg_put"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13557">
        <property type="entry name" value="Phenol_MetA_deg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="271" mass="30739" checksum="DBD5BDD6F60CB53D" modified="2015-11-11" version="1">MDRKIFSKALELYFIMFCFVFATAFAEEPKKIVDDSFLIEEAYNQEAGVVQHIQTFQYMKDKTWDYSFTQEWPVLGQTHQLSYKIPITHVTDPDNSTGIGDVMISYRYQAIMQDRIAFSPRFSALFPTGDYKRGMGSGSPGIQTNLPFSIELSDKWITHWNIGATYTPNSKDSVGSESDNLVGNVGASIIWLIKEDFNFMLEVLWSHSEIFNEEVFTREEDSLLISPGVRYAINFESGLQIVPGIAFPVGLGASEGEYGVFAYLSFEHPLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXV2</accession>
    <name>A0A0M2UXV2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptidase_MA_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01492</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000153">
        <property type="protein sequence ID" value="KKO19796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19796">
        <property type="protein sequence ID" value="KKO19796"/>
        <property type="gene ID" value="BROFUL_01492"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039568">
        <property type="entry name" value="Peptidase_MA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13485">
        <property type="entry name" value="Peptidase_MA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="domain" description="Peptidase_MA_2" evidence="2">
        <location>
            <begin position="115"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="390"/>
            <end position="423"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19796.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="455" mass="52368" checksum="6923E28B4D87A507" modified="2015-11-11" version="1">MRFYEGNYQESLSYLKEALKDPGLAETGKKFYDLVDRIYQTAGKFKEVKTEHFLFRYLEEKDAILAEYALDTLEKAYHAIGNDLQYFPRKPVLVEVFPDAESFCAISTLTKNEIETSGTVAICLFNRIIITSPRLLPRGYQWLDTLTHEYVHYVIMKKTYNRVPIWLHEGLAKYEEGRWLEGISPKLPVSLESLVAEAIEKNYFITFEQMHPSLAKLKRKEDTALAFAEVFTVIDYLFNHGGYPALISILDDIRGGKSPEEAVSLATGVPFAVFEKNWLQDLKQKKFRRIHGIQMLPTKLQETSAIVDDVESVAEIEVKDARKFAVLGDLLRREGLQNAAIIEYEKANKKAGNISPQIQNKLAMSYLMDTQYAKAEEILQVALEYYPEYPATYISLGELYQRKGEYDTAIEFLSRANHINPFHPGVHKNLAQLYQKRDRKDDAAAELRRLMMLTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXV3</accession>
    <name>A0A0M2UXV3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH merR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00356</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000044">
        <property type="protein sequence ID" value="KKO20923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20923">
        <property type="protein sequence ID" value="KKO20923"/>
        <property type="gene ID" value="BROFUL_00356"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13411">
        <property type="entry name" value="MerR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH merR-type" evidence="1">
        <location>
            <begin position="14"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13411"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="152" mass="17850" checksum="801EA1AFBFA6207B" modified="2015-11-11" version="1">MMTKKELLKKLKEEHIGVSDKMLTYFASLGLIKKPARYGLGKGKGSVSEYDDRVINDIKQIMKLHKEGFTYEQIRQKNMSFDEWLSFFKEMKGSFASEEMEINFLKALPYVSDRDKGRLKLTYDVTEHLTKVVINELESILGKFLKGRKWWI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXV6</accession>
    <name>A0A0M2UXV6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Aspartate ammonia-lyase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01487</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000152">
        <property type="protein sequence ID" value="KKO19801.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19801">
        <property type="protein sequence ID" value="KKO19801"/>
        <property type="gene ID" value="BROFUL_01487"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1841"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.275.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024083">
        <property type="entry name" value="Fumarase/histidase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018951">
        <property type="entry name" value="Fumarase_C_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020557">
        <property type="entry name" value="Fumarate_lyase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000362">
        <property type="entry name" value="Fumarate_lyase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022761">
        <property type="entry name" value="Fumarate_lyase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008948">
        <property type="entry name" value="L-Aspartase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10415">
        <property type="entry name" value="FumaraseC_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00206">
        <property type="entry name" value="Lyase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00149">
        <property type="entry name" value="FUMRATELYASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48557">
        <property type="entry name" value="SSF48557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00163">
        <property type="entry name" value="FUMARATE_LYASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lyase_1" evidence="1">
        <location>
            <begin position="17"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="domain" description="FumaraseC_C" evidence="2">
        <location>
            <begin position="412"/>
            <end position="465"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF10415"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19801.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="471" mass="51190" checksum="507AE08BE6720B03" modified="2015-11-11" version="1">MSKNRIGAFRTERDYLGEMNVPATAYYGVQTARALENFPISGQTSLLAFTLAMVAIKKAAAMVNVELGCLDGKLGNTIIRACDRIVNGEFHDQFLVDVYQAGAGTSHHMNVNEVIANVATEMLGGAKGDYSVVHPNDHVNYGQSTNDVYPAAMRIAALQLSERLVKNLNDLTKTFQEKAQSFDSMVKSGRTHLQDAVPIRVGQEFSGYADSLMKATRGIEKSRESLKELGIGGSAVGTGINTHPEYAARVVERLRNIVNLDVRRARNRFEAMQSNAPCVELSGALRTLAVELIRIANDLRLMGSGPNTGLAEIELPAVQPGSSIMPGKVNPVIPEMMNMVCFSVMGNDLSVALAAQAGQFELNVMMPVIQYKLLDSLLILSNAAKIFHEKCIRGLSVNEGRCRDYALRSLGIVTVLNPIIGYAKASEVVKESMRTGKSPREIILEQGILSAEKVNEVLSPMSMTEPCVRTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY08</accession>
    <name>A0A0M2UY08_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Hemerythrin domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01415</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000146">
        <property type="protein sequence ID" value="KKO19856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19856">
        <property type="protein sequence ID" value="KKO19856"/>
        <property type="gene ID" value="BROFUL_01415"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012312">
        <property type="entry name" value="Hemerythrin-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01814">
        <property type="entry name" value="Hemerythrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hemerythrin" evidence="1">
        <location>
            <begin position="5"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="186" mass="21057" checksum="53A421B245A368F9" modified="2015-11-11" version="1">MNNSPTKMLEDEHLVIAKVISAAPVLADQLEAGQAVDEKTLHGLIEFMHTFADKCHHGKEDDLLFPTLVNKGISKQGCPIGALTAEHARGRTLVQELSNAADAYQSGDRNAENMLVKSLREIITLYPNHIWKEDYLLFPLTNKVLSLEEQQALYRQFEQVWERVGRDVHHRLEQFAEELSKSAHTC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY70</accession>
    <name>A0A0M2UY70_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">NADH dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BROFUL_00754</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the complex I 51 kDa subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000096">
        <property type="protein sequence ID" value="KKO20510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20510">
        <property type="protein sequence ID" value="KKO20510"/>
        <property type="gene ID" value="BROFUL_00754"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.954"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1440.230">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001949">
        <property type="entry name" value="NADH-UbQ_OxRdtase_51kDa_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011538">
        <property type="entry name" value="Nuo51_FMN-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037225">
        <property type="entry name" value="Nuo51_FMN-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019575">
        <property type="entry name" value="Nuop51_4Fe4S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037207">
        <property type="entry name" value="Nuop51_4Fe4S-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019554">
        <property type="entry name" value="Soluble_ligand-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01512">
        <property type="entry name" value="Complex1_51K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10589">
        <property type="entry name" value="NADH_4Fe-4S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10531">
        <property type="entry name" value="SLBB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00928">
        <property type="entry name" value="NADH_4Fe-4S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140490">
        <property type="entry name" value="SSF140490"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142019">
        <property type="entry name" value="SSF142019"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00645">
        <property type="entry name" value="COMPLEX1_51K_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="6" id="KW-0288">FMN</keyword>
    <keyword evidence="9" id="KW-0408">Iron</keyword>
    <keyword evidence="10" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-0520">NAD</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="NADH_4Fe-4S" evidence="12">
        <location>
            <begin position="457"/>
            <end position="502"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007523"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM00928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO20510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="559" mass="60521" checksum="449D36E149E2AE70" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY75</accession>
    <name>A0A0M2UY75_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative cytochrome b</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00759</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000096">
        <property type="protein sequence ID" value="KKO20515.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20515">
        <property type="protein sequence ID" value="KKO20515"/>
        <property type="gene ID" value="BROFUL_00759"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.810.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036150">
        <property type="entry name" value="Cyt_b/b6_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027387">
        <property type="entry name" value="Cytb/b6-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81648">
        <property type="entry name" value="SSF81648"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="73"/>
            <end position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20515.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="113" mass="13361" checksum="C4B65C75D62B58DE" modified="2015-11-11" version="1">MKDYTQGRTPEMLEPFFPNEMFRHIIVSCFLLAVECIAVIFLPFSFPFIEKYAGVPWFGLPFYELHKYLQNDLLLIVIMVFCALFLISWPFLENAFRYNPKNKLSLKKVPANE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYF6</accession>
    <name>A0A0M2UYF6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_00180</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the type-I restriction system S methylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000018">
        <property type="protein sequence ID" value="KKO21098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21098">
        <property type="protein sequence ID" value="KKO21098"/>
        <property type="gene ID" value="BROFUL_00180"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.220"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.220.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000055">
        <property type="entry name" value="Restrct_endonuc_typeI_TRD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044946">
        <property type="entry name" value="Restrct_endonuc_typeI_TRD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01420">
        <property type="entry name" value="Methylase_S"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0680">Restriction system</keyword>
    <feature type="domain" description="Methylase_S" evidence="5">
        <location>
            <begin position="29"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="domain" description="Methylase_S" evidence="5">
        <location>
            <begin position="306"/>
            <end position="481"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="466"/>
            <end position="493"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010923"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01420"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO21098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="502" mass="56770" checksum="4D5F792D6321E2A5" modified="2015-11-11" version="1">MAKVSYIDHIKKNDISVILAEVIFRNLKKDYKSLPLFELAETLSGGTPNRANQSYYGGKIPWFKSGELNDSIITMSEEFITEEGLNNSSAKVFPKGTLLVAMYGATAGKTAILDIDAATNQAICAVVPKNKSIRKDFLFWFLRAHRYYYIDISRGGAQPNISQTVIKNTEVPLIDENEQKSIVEFLTRIEKTKEINYSLIPKQLHKTIKLAFEHLDCLQKLENENLNQSSYFSFLRQSILQEAIEGKLTAKWRKTNSELISGDNHASKLLEKIKAEKERLTKSTKGAKNAKALPPISEEKKPFDLPEGWAWCRLGEAAQGFEYGSSAKSIKTGKVPVLRMGNLQDGVVVWENLVYTNDDGEIQQYLLMSEDLLFNRTNSRELVGKTALFDCEEKAIYAGYIVRFHMCGQISAHFSNYVMNSIYHRKWCNMVKADALGQSNINATKLREFVFPLPPLAEQQAIVDCVEKLVAMIDELEKQVSARKEQSEMLMQSVLREAFAKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYK6</accession>
    <name>A0A0M2UYK6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01730</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000180">
        <property type="protein sequence ID" value="KKO19559.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19559">
        <property type="protein sequence ID" value="KKO19559"/>
        <property type="gene ID" value="BROFUL_01730"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19559.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="130" mass="15030" checksum="AC8FFD102981EE14" modified="2015-11-11" version="1">MRKNNDLRTGPGSQSPWRLPAVLNVVSKHIRYREPQHRLIGLKIVEATEAVEIVIDTDDEFPVGALSPVLYVGEISIPHYKWVSENRYRFIAFDFQNLREGVPIFLGWPGRPETRVETRFRYRLGAPSID</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ42</accession>
    <name>A0A0M2UZ42_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01540</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000160">
        <property type="protein sequence ID" value="KKO19739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19739">
        <property type="protein sequence ID" value="KKO19739"/>
        <property type="gene ID" value="BROFUL_01540"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="63"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="130" mass="14503" checksum="D3B5DCFA162FDFFE" modified="2015-11-11" version="1">MTVLLIGAAFVILLISVSFLIYIKRLHRSASHFQTVGEYVQQGRLDEAVAVLKETLSKDHLNAEAHAALGMIYNKKDLLDDALAELKTALTINPDLISIYQEMYLIYKKKGMEDEASSALASYEKLKGNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZK4</accession>
    <name>A0A0M2UZK4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">PMT_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_01353</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000140">
        <property type="protein sequence ID" value="KKO19924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19924">
        <property type="protein sequence ID" value="KKO19924"/>
        <property type="gene ID" value="BROFUL_01353"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038731">
        <property type="entry name" value="RgtA/B/C-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13231">
        <property type="entry name" value="PMT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="78"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="133"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="199"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="310"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="345"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="368"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="396"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="domain" description="PMT_2" evidence="9">
        <location>
            <begin position="61"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF13231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="526" mass="60156" checksum="13D3F03D702CBB32" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZK9</accession>
    <name>A0A0M2UZK9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01358</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000140">
        <property type="protein sequence ID" value="KKO19929.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19929">
        <property type="protein sequence ID" value="KKO19929"/>
        <property type="gene ID" value="BROFUL_01358"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023614">
        <property type="entry name" value="Porin_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010870">
        <property type="entry name" value="Porin_O/P"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07396">
        <property type="entry name" value="Porin_O_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19929.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="417" mass="47423" checksum="6A4ABE65C6A3ABB4" modified="2015-11-11" version="1">MLLFQMKRTTRSVKGDGVADVCFVSLFRRPGIEGFIGFIITLWCVACCADDRVGTIAAPVAGSESVWEGHQAVSRRDFPEDYSFDSASILTEPEGDGKKLQFHGYFEVTSPIHGSDDESQQSSSQFLKDNELTLWLRKRISRRLSFGSEIEIKDGFETYELERCEFDYEIMKKLLIVRLGKFKYPLGIERLVESAPLNKLIDRPFPSTRIIPGTYSDIGGMLHGAVPFPHDTRLKYEFALSNGLAGPDHEDVQQLWDNNRNKALGGRLGYEILPGLELGGSYSRGKYDEDDRLSIDFLGADIQFRKGNLEVRGEYITSQVEQRSADGGDYDRNGYYFQVSYQHPFHLNYIRYAEGVFRFDSVDPNRDITDGNEADRIAVGINYAPTEQVIFKIEYEVENEPGEEIHGKAFVQAIFRW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZV3</accession>
    <name>A0A0M2UZV3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01296</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20024">
        <property type="protein sequence ID" value="KKO20024"/>
        <property type="gene ID" value="BROFUL_01296"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="37" mass="4234" checksum="13F9F603D2EB89C9" modified="2015-11-11" version="1">MIDTHCIRRKVRHAASGYFDANTLNRTAKILSDDITE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZY2</accession>
    <name>A0A0M2UZY2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01206</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000128">
        <property type="protein sequence ID" value="KKO20079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20079">
        <property type="protein sequence ID" value="KKO20079"/>
        <property type="gene ID" value="BROFUL_01206"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="42" mass="4615" checksum="CCFB79CD7BB46F5F" modified="2015-11-11" version="1" fragment="single">RHIVMSRYTQPEKDVALLLAQLGLTLPEQPPPKVYASGQVGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZZ3</accession>
    <name>A0A0M2UZZ3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00753</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000095">
        <property type="protein sequence ID" value="KKO20531.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20531">
        <property type="protein sequence ID" value="KKO20531"/>
        <property type="gene ID" value="BROFUL_00753"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.951"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1220">
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014755">
        <property type="entry name" value="Cu-Rt/internalin_Ig-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008964">
        <property type="entry name" value="Invasin/intimin_cell_adhesion"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032812">
        <property type="entry name" value="SbsA_Ig"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13205">
        <property type="entry name" value="Big_5"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49373">
        <property type="entry name" value="SSF49373"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Big_5" evidence="2">
        <location>
            <begin position="878"/>
            <end position="978"/>
        </location>
    </feature>
    <feature type="domain" description="Big_5" evidence="2">
        <location>
            <begin position="983"/>
            <end position="1085"/>
        </location>
    </feature>
    <feature type="domain" description="Big_5" evidence="2">
        <location>
            <begin position="1090"/>
            <end position="1191"/>
        </location>
    </feature>
    <feature type="domain" description="Big_5" evidence="2">
        <location>
            <begin position="1197"/>
            <end position="1299"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20531.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1407" mass="141305" checksum="0332BC5BFA9B72B4" modified="2015-11-11" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V009</accession>
    <name>A0A0M2V009_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Citrate transporter protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_00722</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the CitM (TC 2.A.11) transporter family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000090">
        <property type="protein sequence ID" value="KKO20546.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20546">
        <property type="protein sequence ID" value="KKO20546"/>
        <property type="gene ID" value="BROFUL_00722"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015105">
        <property type="term" value="F:arsenite transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000802">
        <property type="entry name" value="Arsenical_pump_ArsB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004680">
        <property type="entry name" value="Cit_transptr-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03600">
        <property type="entry name" value="CitMHS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00758">
        <property type="entry name" value="ARSENICPUMP"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="28"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="61"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="103"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="141"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="193"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="234"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="277"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="313"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="353"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="domain" description="CitMHS" evidence="10">
        <location>
            <begin position="2"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF03600"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO20546.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="377" mass="41318" checksum="68BB1B16F434ED0A" modified="2015-11-11" version="1">MLGAVLMVLSGVLTLDEAYRAVDFNTILLLLGMMILIGYLKIANCFTYLSYLLITHARNSFLLLCFVSFSSGILSALFVNDTICLMFTPLLILALSQTKLNPVPYLIALATSSNIGSVVTLTGNPQNMLIGVFSKIPYLDFAWHLLPVGIASLMANVLIIFLLFKKDITFKRLEPIVLAKPALDRKLTAKSLAVLFCILLEFVFTGNLPLSAITGGLALIILSRTKPQHALEKVDWTLLLFFSGLFIVVGGINKAGFLPLAHNAFEPYLGQTASSQIIHFSIFSVLASNLVSNVPFVLLSANWIDTFAAPKTMWYVLAMSSTFAGNLTVMGSVANMIVLELSKEHVHVGFWDFFKVGFTTTVVSTLLGITFFILFIH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0J2</accession>
    <name>A0A0M2V0J2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00573</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000079">
        <property type="protein sequence ID" value="KKO20706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20706">
        <property type="protein sequence ID" value="KKO20706"/>
        <property type="gene ID" value="BROFUL_00573"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="673" mass="75261" checksum="59F51EBB66E834AF" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0K1</accession>
    <name>A0A0M2V0K1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">MTTase N-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_01074</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20224">
        <property type="protein sequence ID" value="KKO20224"/>
        <property type="gene ID" value="BROFUL_01074"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1339"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035596">
        <property type="term" value="F:methylthiotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020612">
        <property type="entry name" value="Methylthiotransferase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013848">
        <property type="entry name" value="Methylthiotransferase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038135">
        <property type="entry name" value="Methylthiotransferase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00919">
        <property type="entry name" value="UPF0004"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51449">
        <property type="entry name" value="MTTASE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01278">
        <property type="entry name" value="MTTASE_RADICAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="MTTase N-terminal" evidence="7">
        <location>
            <begin position="1"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="172" mass="19424" checksum="64DD65CE099E03B3" modified="2015-11-11" version="1">MKGFLEITPEQAADLYVINTCTVTSTSDEKSRQCIKKVRKKNPRATVVVTGCYAEADAETINNMEGVDYVITKAQEAQLAEIVCRDTVHRVPAQKTITPLANSNATEDSIYHLKISQFAGHTRAFLKIEDGCDMYCSYCIIPYVRGGIKSRRHKRFLKRHGVSLEMVTRRSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V151</accession>
    <name>A0A0M2V151_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00392</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000052">
        <property type="protein sequence ID" value="KKO20876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20876">
        <property type="protein sequence ID" value="KKO20876"/>
        <property type="gene ID" value="BROFUL_00392"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="229" mass="26715" checksum="697BF0F91AFB2D8F" modified="2015-11-11" version="1">MVQVDDGKRAQEIAEEFLRVNFAKAFDALARQINPVLPRIKKVFSQGYYWVLDQGEYATDVLFKDRQSLLEIYPELVEHALVSFSASDVMTFLGRKLRGNFQGEMITDTKKRPQGIRIKHRMKQNSLKMYDKWSVLRVETTINNPREFKIYRKVERYGKKVMRWIPMGKSVFNLYRYAEVSKIANERYLGALSAVVPLNDCVRELEQLAQSVHDGQDRYSGFVTVHPLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1G7</accession>
    <name>A0A0M2V1G7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00682</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20564.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20564">
        <property type="protein sequence ID" value="KKO20564"/>
        <property type="gene ID" value="BROFUL_00682"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20564.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="41" mass="4930" checksum="33B1A1C5DB6D6DFD" modified="2015-11-11" version="1">MFSWQKRLQTVHNQKRIIAGIIETRKTVETRNKRGMEIEDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1L9</accession>
    <name>A0A0M2V1L9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">tRNA dimethylallyltransferase</fullName>
            <ecNumber evidence="5">2.5.1.75</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Dimethylallyl diphosphate:tRNA dimethylallyltransferase</fullName>
            <shortName evidence="5">DMAPP:tRNA dimethylallyltransferase</shortName>
            <shortName evidence="5">DMATase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">Isopentenyl-diphosphate:tRNA isopentenyltransferase</fullName>
            <shortName evidence="5">IPP transferase</shortName>
            <shortName evidence="5">IPPT</shortName>
            <shortName evidence="5">IPTase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">miaA</name>
        <name evidence="9" type="ORF">BROFUL_00226</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 5 7">Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 5 6">
            <text>adenosine(37) in tRNA + dimethylallyl diphosphate = diphosphate + N(6)-dimethylallyladenosine(37) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:26482"/>
            <dbReference type="Rhea" id="RHEA-COMP:10162"/>
            <dbReference type="Rhea" id="RHEA-COMP:10375"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57623"/>
            <dbReference type="ChEBI" id="CHEBI:74411"/>
            <dbReference type="ChEBI" id="CHEBI:74415"/>
            <dbReference type="EC" id="2.5.1.75"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="5">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 5 8">Belongs to the IPP transferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.75" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000028">
        <property type="protein sequence ID" value="KKO21041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21041">
        <property type="protein sequence ID" value="KKO21041"/>
        <property type="gene ID" value="BROFUL_00226"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.277"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052381">
        <property type="term" value="F:tRNA dimethylallyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008033">
        <property type="term" value="P:tRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00185">
        <property type="entry name" value="IPP_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039657">
        <property type="entry name" value="Dimethylallyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018022">
        <property type="entry name" value="IPT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11088">
        <property type="entry name" value="PTHR11088"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00174">
        <property type="entry name" value="miaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 8" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 6" id="KW-0819">tRNA processing</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="12"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="region of interest" description="Interaction with substrate tRNA" evidence="5">
        <location>
            <begin position="35"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="10"/>
            <end position="17"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="site" description="Interaction with substrate tRNA" evidence="5">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with substrate tRNA" evidence="5">
        <location>
            <position position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001549"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003783"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003785"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO21041.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="313" mass="35781" checksum="A4EFD1A63ACF8B15" modified="2015-11-11" version="1">MPIPLWILTGPTASGKTEIGLEITENTGMEIISADSMLVYRGMDIGTEKPSLDRRNKIPHHLIDIADPWEEYSVGQYVKDFDAVAQSLCRQGKQFIVIGGTALYLKALVDGLFEGPPADWEYRNSLKTLAREKGPHYLHTLLGEIDPEAAGKLHFNDQKRIIRALEVFKTTNRRISSFQTQFGHKNPKYDCMLVAIDYDRDALYNRIETRVDRMFDRGLVDEVRGLVSNPRGLSRQASQALGYKEIVDYFLGKYTFSEVSREIKQRTRRFAKRQMTWFRSFSGIHWIHAGRDKDAASLSGQVLQCFLDQKNKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1R1</accession>
    <name>A0A0M2V1R1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_00184</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000019">
        <property type="protein sequence ID" value="KKO21086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21086">
        <property type="protein sequence ID" value="KKO21086"/>
        <property type="gene ID" value="BROFUL_00184"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025662">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025944">
        <property type="entry name" value="Sigma_54_int_dom_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00158">
        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01590">
        <property type="entry name" value="HTHFIS"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00675">
        <property type="entry name" value="SIGMA54_INTERACT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00688">
        <property type="entry name" value="SIGMA54_INTERACT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="7">
        <location>
            <begin position="22"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="6">
        <location>
            <begin position="162"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="5">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO21086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="485" mass="55063" checksum="CA8C182102858BF7" modified="2015-11-11" version="1">MKNWRFRIIFLQGDSEIMENGKILVVEDQDAMRESLMIAFRDEGYQVDVAVSGEEALQKLGSHDGYDLIVTDLKMKKIDGLEVLRLAKSLHPSTEVVLITAYGTISTAVQAIRDGAYDYVTKPFRHQEILKVAKKALEKKSLKDRVRYLEGEIRDKYKFEGIVGNSNAMLEVLKIISQVCRTESTVLVTGESGTGKELVARAVHYNSLRREGPFIVINCGALPENLQESELFGHMKGAFTGAIKDKVGLFLQAQRGTILLDEIGETSPSTQVKLLRFLQDGEIRPVGGNKAIYVDARIIASTNENLEKAVESGKFRKDLFYRINVIRIHLPPLKDRREDIPLLVDYFLEKILEKLKKGKRVFSEESMRSFINYDWPGNIRELQNIIERAVTLSKNEIINAEELPLPIEEVAALARNPIEEKKRKSFIVTTLAEQEKNAIVEALNKYGGNQTKVAQMLGISTTTLWRKIKKYRIRPQHEISDKTDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1R6</accession>
    <name>A0A0M2V1R6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00173</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000018">
        <property type="protein sequence ID" value="KKO21091.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21091">
        <property type="protein sequence ID" value="KKO21091"/>
        <property type="gene ID" value="BROFUL_00173"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21091.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="86" mass="10003" checksum="719327511C0FA16A" modified="2015-11-11" version="1">MSTTLINSSKSSRRIVQIVHNPSVRKAYEHIENHYTEGMSILEPLKAGIKATDELIDEIVYRLYRLTEEEIEVVRVNDRNSRFLSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1S0</accession>
    <name>A0A0M2V1S0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00178</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000018">
        <property type="protein sequence ID" value="KKO21096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21096">
        <property type="protein sequence ID" value="KKO21096"/>
        <property type="gene ID" value="BROFUL_00178"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="113" mass="12949" checksum="3F9B1D78ACB12E27" modified="2015-11-11" version="1">MLDTFNEVLLQCFSRKHKQLTSQYSKAAGNKPHPDFGNWLNHSQLAMVLPKGIQWFQEVHNNRVKADLAHAKIKGGKTKGKPTKPISYEKADKIVKRAKIAWAELISEWKKIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1Y0</accession>
    <name>A0A0M2V1Y0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Threonine synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_00137</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 4">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the threonine synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000016">
        <property type="protein sequence ID" value="KKO21136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21136">
        <property type="protein sequence ID" value="KKO21136"/>
        <property type="gene ID" value="BROFUL_00137"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.172"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004450">
        <property type="entry name" value="Thr_synthase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00260">
        <property type="entry name" value="thrC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PALP" evidence="5">
        <location>
            <begin position="87"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="4">
        <location>
            <position position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR604450-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO21136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="445" mass="49276" checksum="C09CC94E3F9390D3" modified="2015-11-11" version="1">MPYRAWFQCISGCNERYELNEVVYQCKKCGDLLEVKHDMDKLRRHSPDHWKKLFDERYRRTRWPYGSSVWGKKEWVCPTVDNANVVSLYEGGSNLFWAERLGKELGIEDLWIKQCGNAHTGSFKDLGMTVLVSMVKQMIAEGKNIPAVACASTGDTSAALASYCAAAGILAIVFLPKNKVSHAQLIQPIANGALTLSLDTDFDGCMKLVRDICSKNNIYLANSMNSLRIEGQKTVSIEIVQQFDWNVPDVVIVPGGNLGNTAALGKGFLMMKELGVIDKQPRIVCAQAAKANPLYLSYLKGFREFAPVKAQKTLANAIQIGDPVSYKKAINVLKTFNGMVEQATEDELANAAAQADKTGLFCCPHTGVALAALTKLLKTNMIRPDEKVVVISTAHGLKFPEFKISYHESKLEEVTSHFANLPVEVSPQYDAVREAIFRKLEQMSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2Y8</accession>
    <name>A0A0M2V2Y8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Y1_Tnp domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00220</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000027">
        <property type="protein sequence ID" value="KKO21049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21049">
        <property type="protein sequence ID" value="KKO21049"/>
        <property type="gene ID" value="BROFUL_00220"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1290">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002686">
        <property type="entry name" value="Transposase_17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036515">
        <property type="entry name" value="Transposase_17_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01797">
        <property type="entry name" value="Y1_Tnp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01321">
        <property type="entry name" value="Y1_Tnp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143422">
        <property type="entry name" value="SSF143422"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Y1_Tnp" evidence="1">
        <location>
            <begin position="81"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="223" mass="26580" checksum="7323351C0C418128" modified="2015-11-11" version="1">MQDNKIFYRRNLPHYQPAYATYFTTFRLTGSLPAEVIARLKEEHRQNEKLLLKIRDEKIRKQEILDMHKRHFGNFDEMLDQAANNQNWLRDDRVAQVIIEAMHFRDKKTYNLLAYCIMPNHVHMVFTIGRRTSSPYKGKTASGAYIVTKILENLKWYTAVKANKILNRKGAFWQHESYDHVVRDGKESERIINYVLHNPVRAGLVSSRDQWKWSYERNSTHNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V305</accession>
    <name>A0A0M2V305_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00201</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000025">
        <property type="protein sequence ID" value="KKO21064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21064">
        <property type="protein sequence ID" value="KKO21064"/>
        <property type="gene ID" value="BROFUL_00201"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="62" mass="7144" checksum="B83F0B1520D249FC" modified="2015-11-11" version="1">MRKFCSMGSECLVVQISINTNKDGVTQDHEIIQLAENPGLLLYKLQLHSFINHFWNRKGTII</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UP27</accession>
    <name>A0A0M2UP27_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03404</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SAM hydrolase / SAM-dependent halogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000312">
        <property type="protein sequence ID" value="KKO17893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17893">
        <property type="protein sequence ID" value="KKO17893"/>
        <property type="gene ID" value="BROFUL_03404"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4180"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002747">
        <property type="entry name" value="SAM_Chlor/Fluor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023227">
        <property type="entry name" value="SAM_OH_AdoTrfase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023228">
        <property type="entry name" value="SAM_OH_AdoTrfase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35092">
        <property type="entry name" value="PTHR35092"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01887">
        <property type="entry name" value="SAM_adeno_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006779">
        <property type="entry name" value="UCP006779"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101852">
        <property type="entry name" value="SSF101852"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102522">
        <property type="entry name" value="SSF102522"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="202"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00024035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO17893.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="311" mass="34281" checksum="12570E7328636A06" modified="2015-11-11" version="1">MRQPRIITLLTDFGNQDAYVGIMKGVISGINPVANIIDICHSIPPQDVFNGAYLLSTAYRYFPKGAIHVAVVDPGVGSERDIVCVEIRDHTFLAPNNGILSFVIQEERPKRIFRVTNSRYFLASPGNTFHGRDIFAPVAAHLSLGVKPQQLGDTSHSLETLDIPQPVQKNQGQLEGRIISIDRFGNLITNFTQAQITRHFSNQTQNGGGRTGIGRLKTDDRRMTTDTLRKTSKNRMVLLCTTMETTLGRKRIIGLSNTYASVPAGTPLVLFGSAGFLEVSVNQGNARQYFKIDRGDVITIGSGRKKLIKTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPB5</accession>
    <name>A0A0M2UPB5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Prenyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_03340</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000306">
        <property type="protein sequence ID" value="KKO17968.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17968">
        <property type="protein sequence ID" value="KKO17968"/>
        <property type="gene ID" value="BROFUL_03340"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4113"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016765">
        <property type="term" value="F:transferase activity, transferring alkyl or aryl (other than methyl) groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.357.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039653">
        <property type="entry name" value="Prenyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000537">
        <property type="entry name" value="UbiA_prenyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044878">
        <property type="entry name" value="UbiA_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11048">
        <property type="entry name" value="PTHR11048"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01040">
        <property type="entry name" value="UbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="55"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="105"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="143"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="169"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="224"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="254"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="291"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO17968.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="310" mass="35044" checksum="814DE32B39FE13E4" modified="2015-11-11" version="1">MTNQNLIVGNQKNRHGHLKILKYVLLSMRPEQWIKNLFVFAALLFSKNVHNPSKVIEALIGFAIFCMITGCTYLVNDLIDLEKDRRHPVKSTRPIAAGKLREKTVILVILLLGCISFFFAFSINKVFGIIVLCYFILNVNYSLYLKNIVIIDAAAIAAGFVLRVWGGAVIISVTASEWLFLCTILLSLFLGFSKRRHELVLLADNAISHRTVLEHYSAYYLDQMISVVAASTVICYALYTMSKTTAESLGTSKLIYTLPFVLYGIFRYLYLVHQKEKGGNPTDVMLTDGPMIVNVILWIISSFLFIYLVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQF3</accession>
    <name>A0A0M2UQF3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02985</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000281">
        <property type="protein sequence ID" value="KKO18328.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18328">
        <property type="protein sequence ID" value="KKO18328"/>
        <property type="gene ID" value="BROFUL_02985"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="65"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="96"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18328.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="126" mass="14509" checksum="8CF8FCC36F08D863" modified="2015-11-11" version="1">MTVALGVGFLNYYERTGFSSQKTIRYYCGNEEEDINTPLSAEENRSKLEEGLFFPKSYRELLDVTHTHIFSMPIVIFILSRIMAMTHTREGLKVTIYGASFMGILLNLGMAYQIFIPSFCAYLYNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQL9</accession>
    <name>A0A0M2UQL9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Na+-translocating NADH-quinone reductase subunit A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02899</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18393">
        <property type="protein sequence ID" value="KKO18393"/>
        <property type="gene ID" value="BROFUL_02899"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010208">
        <property type="entry name" value="Ion_transpt_RnfC/RsxC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037225">
        <property type="entry name" value="Nuo51_FMN-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43034">
        <property type="entry name" value="PTHR43034"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13183">
        <property type="entry name" value="Fer4_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142019">
        <property type="entry name" value="SSF142019"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="305"/>
            <end position="336"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="344" mass="38854" checksum="D66FB38D379CF06E" modified="2015-11-11" version="1">MRKETIGFKGGFHLLDAYPVSFCNIIDEISSDGALETFQLPVPAKKVEQVIVNLCPTEPWALPNWVILKHKTAAFLAMVKEMQTRYFPDARFSLAINEKEERVVEDAKLFAGSEDWIRAVPLAAKYPQDDPIVLIKVLLGMDVTFGQDTMPLGIVTLDAQTVSAIYEQGIRGKNVNSRYLVLSGTGLRENEIIHVELGTSVKKILKNKVRDADAFRVFINGPLRGKEITDFSYTIDWSVNNIVVLEEKNRKVLFPMFKADELAFTTNMLGESRRCVYCNFCDDICPVGLEPALYYHHYVRGEKHKARLYHLGKCIECGLCSFICPSKLELLKIILECKAPGKNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQQ5</accession>
    <name>A0A0M2UQQ5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_03328</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000305">
        <property type="protein sequence ID" value="KKO17985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17985">
        <property type="protein sequence ID" value="KKO17985"/>
        <property type="gene ID" value="BROFUL_03328"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4101"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04590">
        <property type="entry name" value="CBS_pair_CorC_HlyC_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002550">
        <property type="entry name" value="CNNM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044751">
        <property type="entry name" value="Ion_transp-like_CBS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01595">
        <property type="entry name" value="DUF21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51846">
        <property type="entry name" value="CNNM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0129">CBS domain</keyword>
    <keyword evidence="5 7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2 7 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="6"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="56"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="96"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="CNNM transmembrane" evidence="10">
        <location>
            <begin position="1"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="9">
        <location>
            <begin position="208"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="9">
        <location>
            <begin position="273"/>
            <end position="329"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO17985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="348" mass="39145" checksum="4A29F50DE4186766" modified="2015-11-11" version="1">MEWIIVIVLVLFNGVFSCMEMAFASANVPLLREMASKGNTSAKIFIHLKGRPERTFAVIQIGITLVGISSAAVGGAEVKTSILPYIRDLFHVSGAFAEILGIVFFIIPFTFFTVIIGELVPKAIAIRYPEEVSLFSSRLLTLMTKIASPLVHILEKSTVKLLFLIGIRHSPPSEETVPDLPLKSLHPFHRDYILNLFALRFKKASDVMLPFHKVVAIHSSMGKEEILKIIIACGHTRIPVVSDETEPRVVGILHTKEFVAMMDTKTEFSLTSLLRKPYFIDANESILRILKNFQGNRIHMAIVLRDTRPIGIISLEDIIEEVVGEIYDEDDDGIVKRIWNQRISTRRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQY0</accession>
    <name>A0A0M2UQY0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Hemerythrin domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02817</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000265">
        <property type="protein sequence ID" value="KKO18493.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18493">
        <property type="protein sequence ID" value="KKO18493"/>
        <property type="gene ID" value="BROFUL_02817"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012312">
        <property type="entry name" value="Hemerythrin-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01814">
        <property type="entry name" value="Hemerythrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hemerythrin" evidence="1">
        <location>
            <begin position="93"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18493.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="265" mass="30536" checksum="2F6BDEAB696FAB6A" modified="2015-11-11" version="1">MENVLNKEIKKIIDDCPEVGRILEEYGIGCVPCSVGSCLLKDVVGIHNLDPEREATLMYRIEKAIYPDRNVSKPVIDASKKSAPKKITYSPPVKKLVDEHVLIKRLLALVPTIVDYIESSMKVDKDLVLKCVDFIRTYADKYHHMKEEDILFKYVDDKAEVIQVMYKDHDTGRGYIRQVVEGAETGNKAQIKQNLLAYRELLTQHIKKEDEILYPWIDRQLSTTQVGEMFRKCNEADASVGEELPKKYERFITDLEGKFLQEVVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR05</accession>
    <name>A0A0M2UR05_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Molybdopterin oxidoreductase, beta (Fe-S) subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_03228</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[3Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:21137"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000295">
        <property type="protein sequence ID" value="KKO18080.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18080">
        <property type="protein sequence ID" value="KKO18080"/>
        <property type="gene ID" value="BROFUL_03228"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3974"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009061">
        <property type="term" value="P:anaerobic respiration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd10555">
        <property type="entry name" value="EBDH_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017839">
        <property type="entry name" value="DMSO_Rdtase_II_Fe-S_su"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13247">
        <property type="entry name" value="Fer4_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="7" id="KW-0249">Electron transport</keyword>
    <keyword evidence="8" id="KW-0408">Iron</keyword>
    <keyword evidence="9" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="10">
        <location>
            <begin position="7"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="10">
        <location>
            <begin position="132"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="10">
        <location>
            <begin position="165"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO18080.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="344" mass="39628" checksum="2A48D9AC45191DFB" modified="2015-11-11" version="1">MPIMKQIRMVADLNKCLGCQTCTMSCKTMWTDRNQGQTHMYWINVETRPGKGYPKNWETQGGWFTADRNNIPLPNINEDYGAPWEYNHHEVLKTEGGDSQASNLIPSPVPSGSNAYASNWDEDVGKGTFPNSYYFYLPRICNHCTDPPCLEACPRQAIYKRKEDGIVLIDPKRCRGYRYCIKGCPYKKIYYNPVEKISQKCIFCYPRIEQRKGNFCAAQCVGRIYWVGYAEDANSNVYKLVNKWKVALRLHPEYKTEPNVFYIPPLSPPTYSFAGKLTTSPRIPIEMLAKMFGDTYDQSYDQRVARIRQISDIIQSEREKVSSGGSSELIDILISRSETERFQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR36</accession>
    <name>A0A0M2UR36_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Hydroxylamine oxidoreductase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">hao_7</name>
        <name evidence="2" type="ORF">BROFUL_02751</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000257">
        <property type="protein sequence ID" value="KKO18553.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18553">
        <property type="protein sequence ID" value="KKO18553"/>
        <property type="gene ID" value="BROFUL_02751"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036280">
        <property type="entry name" value="Multihaem_cyt_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48695">
        <property type="entry name" value="SSF48695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005643953" evidence="1">
        <location>
            <begin position="22"/>
            <end position="536"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18553.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="536" mass="62225" checksum="8745266384F5F827" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR67</accession>
    <name>A0A0M2UR67_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Fumarate hydratase alpha subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_03169</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-I fumarase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18120">
        <property type="protein sequence ID" value="KKO18120"/>
        <property type="gene ID" value="BROFUL_03169"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3910"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008152">
        <property type="term" value="P:metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004646">
        <property type="entry name" value="Fe-S_hydro-lyase_TtdA-typ_cat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05681">
        <property type="entry name" value="Fumerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00722">
        <property type="entry name" value="ttdA_fumA_fumB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="6" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fumerase" evidence="7">
        <location>
            <begin position="14"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF05681"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="285" mass="30460" checksum="E18EADDA90F97BB7" modified="2015-11-11" version="1">MGIRTRISAGEIADKVYQLCMDANFRLSGDMLGALKNAYAAEVSPVAKEVFADLLENAKIALECQMPLCQDTGVAVVFVELGEDVEITGGRLHDAIHDGMRKGYKEGYLRKSMVANPLKRVNTGDNTPAIIHTELIPGSHVRITFMAKGGGCENMSRIAMLTPADGREGVVNFVVETVRIAKANPCPPIIVGVGIGGTFDHAALIAKKSLLRPLGTKHDDPDTADLEKEMLERVNDLGIGAQGLGGRITALGVHVEWSPCHIASLPVAVNIECHAHRVRTAVLGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URB6</accession>
    <name>A0A0M2URB6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Dimer_Tnp_Tn5 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02698</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000249">
        <property type="protein sequence ID" value="KKO18603.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18603">
        <property type="protein sequence ID" value="KKO18603"/>
        <property type="gene ID" value="BROFUL_02698"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3337"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.740.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003201">
        <property type="entry name" value="Transposase_Tn5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014737">
        <property type="entry name" value="Transposase_Tn5-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02281">
        <property type="entry name" value="Dimer_Tnp_Tn5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Dimer_Tnp_Tn5" evidence="1">
        <location>
            <begin position="203"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18603.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="305" mass="35603" checksum="FBB224BA9B20A83C" modified="2015-11-11" version="1" fragment="single">RKQKPIEEKESYKWLRSLQATARAVKEASGVDWVSVGDREADTYELFELASHEEVSFLVRSFHNRRVCEDAKVWEVVDREAPVGRMRVFVKGKDKREREAELEIRFREVRIRHPKKEKEEVRLWAIRAKEVSPPKGEEGLDWKLLTNREVRDFEQACEKVQWYTVRFRIEVFHKILKSGRRSEDRRLGSLDRLERCLTIDMITAWRLMYLTMLGRETPEVASDLLFSEQEVEVLKLIKYRGEYAANKGKSLSLREAILIIAPLGGFVKGKGREPGVEVMWRGIRRLADILIGVSLTTSIPQFDSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URF2</accession>
    <name>A0A0M2URF2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02650</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000242">
        <property type="protein sequence ID" value="KKO18643.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18643">
        <property type="protein sequence ID" value="KKO18643"/>
        <property type="gene ID" value="BROFUL_02650"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039448">
        <property type="entry name" value="Beta_helix"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022441">
        <property type="entry name" value="Para_beta_helix_rpt-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006626">
        <property type="entry name" value="PbH1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13229">
        <property type="entry name" value="Beta_helix"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00710">
        <property type="entry name" value="PbH1"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="SSF51126"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03804">
        <property type="entry name" value="para_beta_helix"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="domain" description="Beta_helix" evidence="2">
        <location>
            <begin position="103"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="domain" description="Beta_helix" evidence="2">
        <location>
            <begin position="245"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="439"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18643.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="439" mass="47089" checksum="D14F3F51647199E0" modified="2015-11-11" version="1" fragment="single">MTINKKSRTTPSLLSAMVFICAVFMVTLCGTGVTYGLTHSSNITSDETWYTADNPHIVTGGIHVYNNATLKIEAGCQVRFDPGAVLYFGYYSGAALNATGTSLNPITFTSNAATPAPNDWDGIVFFNSTDDASTIMDYCTVEYGGYSAYQSNIYCNTASPTIQNCTIRHSGEYGIYCDNYSAPTLINNTISNNGWFPITLNCNNLDTHVAGNTGSGNGTDAIEVRGGGITSSHTWVPQDFNFTVTDSIHVYNDAILTINPGCLVKFRQGTGLYIGYYSGATLNATGTSLNPITFTSGVATPAPDDWEGIVFFNSTVDASTIMDYCTVEYGGFRSYHSNINCNNSSPTIQNCTIRYSDEYGIYCDDASAPTLTNNTISNNGAFPISLFCNLLDTNVTGNTGSSNGTNAIEVRGGGITLSRTWVPQDFYFNVTGSGIHVFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URH3</accession>
    <name>A0A0M2URH3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02850</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000268">
        <property type="protein sequence ID" value="KKO18467.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18467">
        <property type="protein sequence ID" value="KKO18467"/>
        <property type="gene ID" value="BROFUL_02850"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038078">
        <property type="entry name" value="PhoU-like_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18467.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="206" mass="23022" checksum="34CC4C9CBB804A96" modified="2015-11-11" version="1">MYATNMNSDLKGVVERISGMYFRIESILSLCMDGFMKHKVAMIDKANAVSLAIHDEENELIGLLSDKAAKATEDKYLIKTLMAVVAHIEMATNGLDGILRCVKEKVNEGVLFSDKGVHEISHLFKETLEITKTAGDAFLTRNEVLKKHITDKYISLGQTVDAYSEEHEDRLIKGICQPRSSSLYLNIVDSLMKVVGHLQQATDKIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URW8</accession>
    <name>A0A0M2URW8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02891</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18385.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18385">
        <property type="protein sequence ID" value="KKO18385"/>
        <property type="gene ID" value="BROFUL_02891"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001440">
        <property type="entry name" value="TPR_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00515">
        <property type="entry name" value="TPR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="9"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0802">TPR repeat</keyword>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="35"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="69"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="103"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="200"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="234"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="268"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="302"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="336"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="370"/>
            <end position="403"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18385.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="424" mass="47481" checksum="CF048EA9A2C1DB3B" modified="2015-11-11" version="1">MKKTLVGIGLIVSFLGCTSPNKKHDTSTADQYQRAMYFNNLGAKCVNKNLIDEAILHFKRALFIKPDFAEVHNNLGVAYNRQKMFDEAIGEFKEAIKINPDYSKAHDNLGFAYRQKNMFDEAIAEHTLALKINPKDMEAKKNLDTATEEKKIYEKTKAYATANKGLAPGNITGYNHYARGFFDEAILSFKKVLAEDPNDIMALSCLGNAYSMKGMLDDAIRAYKETVSKDPSNVVAQLYLGDAYLSKGLCDEAILEYEQILRTHPDNTRALYKLGEAYADKGMPDKASAIFNKAIVMHPNFTEAYDKLGMVYLQQGFYDEAISAWKKLLEINPGSSRAHFHLGQTYANKHMTEDAITQFKKTVGASPTNTDARYNLAYAYEEKGMIDEAVAEYKKAISVNSGEQGKITETVNTQDDTEKVIVTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USA6</accession>
    <name>A0A0M2USA6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02341</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18948.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18948">
        <property type="protein sequence ID" value="KKO18948"/>
        <property type="gene ID" value="BROFUL_02341"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016884">
        <property type="term" value="F:carbon-nitrogen ligase activity, with glutamine as amido-N-donor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1510.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003789">
        <property type="entry name" value="Asn/Gln_tRNA_amidoTrase-B-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023168">
        <property type="entry name" value="GatB_Yqey_C_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019004">
        <property type="entry name" value="YqeY/Aim41"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042184">
        <property type="entry name" value="YqeY/Aim41_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28055">
        <property type="entry name" value="PTHR28055"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09424">
        <property type="entry name" value="YqeY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89095">
        <property type="entry name" value="SSF89095"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18948.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="146" mass="16813" checksum="EB498A8DA4D6A92F" modified="2015-11-11" version="1">MNLKERVTEELKSAMKAQDKLRTSVLRMILADIKIADTSGKPNDQIDYVDVARGYCKKLKKSREEYEKLHLPEKVKELDGEIAIVEEYLPKQLSDDEIRKIVNEVIETNKYTAKEMGLAMKLIMGKHGDKVDGKKVQGYLKERLKC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USX1</accession>
    <name>A0A0M2USX1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03221</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000294">
        <property type="protein sequence ID" value="KKO18091.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18091">
        <property type="protein sequence ID" value="KKO18091"/>
        <property type="gene ID" value="BROFUL_03221"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026405">
        <property type="entry name" value="Chlam/Ver/Plancto_rRNA"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04137">
        <property type="entry name" value="Chlam_Ver_rRNA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="53"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18091.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="93" mass="10021" checksum="822418BC7C6F6B87" modified="2015-11-11" version="1">MSVDKSLKLKGKLVRPRNVFTRTERIKLLKGEGKWNPTMSVFGIPKVKTVKIKRKAKSEKKEAKAEATTGAAATPSTPGSAPASATAKEKAKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT10</accession>
    <name>A0A0M2UT10_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">UDP-glucuronate 5'-epimerase</fullName>
            <ecNumber evidence="2">5.1.3.12</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">lpsL</name>
        <name evidence="2" type="ORF">BROFUL_03213</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.1.3.12" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000293">
        <property type="protein sequence ID" value="KKO18111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18111">
        <property type="protein sequence ID" value="KKO18111"/>
        <property type="gene ID" value="BROFUL_03213"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3959"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Epimerase" evidence="1">
        <location>
            <begin position="12"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="314" mass="35354" checksum="71C01147345FB196" modified="2015-11-11" version="1">MRDFLKFSNAKVLITGGLGFIGSSLARRLVQLNAKVTLVDSLIPLYGGNFFNIHDIKDQVTVNISDVRDPYAMAYLVQKQNYLFNLAGQTSHIDSMNDPQTDLNINASAQLSILEACRKHNPNIKIVFASTRQIYGKPEYLPVDEKHPIRPVDVNGINKLAGEWYHLLYNNVYKIRACALRLTNTYGPGMRVKDARQTFLGIWVKNLLEGKPIKVFGDGLQIRDFNYVSDVVDALLIAAINPKADGEVFNLGSTENINLKNLAALLIEIFREGTYEIVPFLPISKQSILEIITVTIPRSINRWDGRRVFCLNMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT43</accession>
    <name>A0A0M2UT43_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Alpha-1,4 glucan phosphorylase</fullName>
            <ecNumber evidence="10">2.4.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">glgP</name>
        <name evidence="11" type="ORF">BROFUL_02072</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Allosteric enzyme that catalyzes the rate-limiting step in glycogen catabolism, the phosphorolytic cleavage of glycogen to produce glucose-1-phosphate, and plays a central role in maintaining cellular and organismal glucose homeostasis.</text>
    </comment>
    <comment type="function">
        <text evidence="8">Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[(1-&gt;4)-alpha-D-glucosyl](n) + phosphate = [(1-&gt;4)-alpha-D-glucosyl](n-1) + alpha-D-glucose 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:41732"/>
            <dbReference type="Rhea" id="RHEA-COMP:9584"/>
            <dbReference type="Rhea" id="RHEA-COMP:9586"/>
            <dbReference type="ChEBI" id="CHEBI:15444"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58601"/>
            <dbReference type="EC" id="2.4.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 10">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the glycogen phosphorylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.1" evidence="10"/>
    <dbReference type="EMBL" id="LAQJ01000208">
        <property type="protein sequence ID" value="KKO19228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19228">
        <property type="protein sequence ID" value="KKO19228"/>
        <property type="gene ID" value="BROFUL_02072"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2583"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008184">
        <property type="term" value="F:glycogen phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102250">
        <property type="term" value="F:linear malto-oligosaccharide phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102499">
        <property type="term" value="F:SHG alpha-glucan phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011833">
        <property type="entry name" value="Glycg_phsphrylas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000811">
        <property type="entry name" value="Glyco_trans_35"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035090">
        <property type="entry name" value="Pyridoxal_P_attach_site"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11468">
        <property type="entry name" value="PTHR11468"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00343">
        <property type="entry name" value="Phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000460">
        <property type="entry name" value="Pprylas_GlgP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02093">
        <property type="entry name" value="P_ylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00102">
        <property type="entry name" value="PHOSPHORYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 10" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="4 10 11" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6 9 10" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 10 11" id="KW-0808">Transferase</keyword>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="9">
        <location>
            <position position="668"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00025174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000460-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO19228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="821" mass="93924" checksum="B9F09680BD57E880" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTA9</accession>
    <name>A0A0M2UTA9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 10">Uridine phosphorylase</fullName>
            <ecNumber evidence="5 10">2.4.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="primary">udp</name>
        <name evidence="12" type="ORF">BROFUL_03067</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9 10">Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>phosphate + uridine = alpha-D-ribose 1-phosphate + uracil</text>
            <dbReference type="Rhea" id="RHEA:24388"/>
            <dbReference type="ChEBI" id="CHEBI:16704"/>
            <dbReference type="ChEBI" id="CHEBI:17568"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57720"/>
            <dbReference type="EC" id="2.4.2.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 10">Pyrimidine metabolism; UMP biosynthesis via salvage pathway; uracil from uridine (phosphorylase route): step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 10">Belongs to the PNP/UDP phosphorylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.3" evidence="5 10"/>
    <dbReference type="EMBL" id="LAQJ01000285">
        <property type="protein sequence ID" value="KKO18221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18221">
        <property type="protein sequence ID" value="KKO18221"/>
        <property type="gene ID" value="BROFUL_03067"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3791"/>
    <dbReference type="UniPathway" id="UPA00574">
        <property type="reaction ID" value="UER00633"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004850">
        <property type="term" value="F:uridine phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009164">
        <property type="term" value="P:nucleoside catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009166">
        <property type="term" value="P:nucleotide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044206">
        <property type="term" value="P:UMP salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018016">
        <property type="entry name" value="Nucleoside_phosphorylase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000845">
        <property type="entry name" value="Nucleoside_phosphorylase_d"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035994">
        <property type="entry name" value="Nucleoside_phosphorylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010058">
        <property type="entry name" value="Uridine_phosphorylase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01048">
        <property type="entry name" value="PNP_UDP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53167">
        <property type="entry name" value="SSF53167"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01718">
        <property type="entry name" value="Uridine-psphlse"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01232">
        <property type="entry name" value="PNP_UDP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 10 12" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 10 12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PNP_UDP_1" evidence="11">
        <location>
            <begin position="18"/>
            <end position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011888"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00021980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00024959"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU361131"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF01048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO18221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="255" mass="27429" checksum="409630C294795A75" modified="2015-11-11" version="1">MDTVYHLDLNSKKIQGAKIALLPGDPFRSQIIAETISGIYRTGNEKLAWKREFCTYLAEIGGRPLLVTSTGIGGPSASIAIDELAQLGIETFLRVGTTGAIQQFINIGDVIITSGSVRLDGASTHYAPIEYPAVAHHEVINALIEGAKKTNAPYHVGVTASSDTFYPGEERNDSFTKYVLKRFQGSTNEWQRLHVLNYEMESSTVLTLTASMGLRGGCITGVVNRGGTGKITKEALKAGEENVIRVAIAAAECLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTB0</accession>
    <name>A0A0M2UTB0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative phage transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02212</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000221">
        <property type="protein sequence ID" value="KKO19077.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19077">
        <property type="protein sequence ID" value="KKO19077"/>
        <property type="gene ID" value="BROFUL_02212"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041657">
        <property type="entry name" value="HTH_17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010093">
        <property type="entry name" value="SinI_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12728">
        <property type="entry name" value="HTH_17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01764">
        <property type="entry name" value="excise"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH_17" evidence="1">
        <location>
            <begin position="7"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19077.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="62" mass="7369" checksum="48C8D6CC68A340FF" modified="2015-11-11" version="1">MESPNIMTIKQVAEYLKVSPRTIYKLVKTGGIPTFKIMNMWRFEQSKIDQWIQDKSESNNFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTH5</accession>
    <name>A0A0M2UTH5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02155</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000214">
        <property type="protein sequence ID" value="KKO19112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19112">
        <property type="protein sequence ID" value="KKO19112"/>
        <property type="gene ID" value="BROFUL_02155"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2690"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011856">
        <property type="entry name" value="tRNA_endonuc-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009362">
        <property type="entry name" value="YhcG_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041527">
        <property type="entry name" value="YhcG_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17761">
        <property type="entry name" value="DUF1016_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06250">
        <property type="entry name" value="YhcG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1016_N" evidence="2">
        <location>
            <begin position="11"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="domain" description="YhcG_C" evidence="1">
        <location>
            <begin position="192"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06250"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="323" mass="38049" checksum="2223E350213A3BDD" modified="2015-11-11" version="1" fragment="single">SREFYGVLLSDIKTRIRQAQANAMLSVNSEMIAMYWDIGRMIHDRQEQEGWSASVIPRLSKDIRNELPEMKGFSERNLGRMLAFFRNYQSIEDFLPQLVAKSDRVKYLPQVVAKTKLKDLLFGIPWGHHSLLMEKIKEFPVRLWYMEQTIQKGWSRDMLGLMIKNREHERQGKSVTNFSRTIPDPGSDLARQSLKDPYIFDFLTLTEPFNERELETELIKHLEKFLLELGGGFAFVGRQYHIEVSGNDFYIDLLFYHLKLRSFIVIELKKGDFRPEYAGKMNFYCSAIDDMLKHPTDRSTYYWPYFVSNERQGSCRVCIARHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTS5</accession>
    <name>A0A0M2UTS5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01807</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000189">
        <property type="protein sequence ID" value="KKO19468.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19468">
        <property type="protein sequence ID" value="KKO19468"/>
        <property type="gene ID" value="BROFUL_01807"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011486">
        <property type="entry name" value="BBP2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07642">
        <property type="entry name" value="BBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19468.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="249" mass="27756" checksum="47E39E4F38BBED89" modified="2015-11-11" version="1">MRAFDRENNSFTLDNIEISVFKQSTEKDPIGFGFTTNYGEIAQRLTFVPSDGRVDDDDFTVSQGFVTYKAPVGKGLDFKFGKFATWIGAELWESVDNPNFSRSLLYQNAIPFTNTGLAISYPLLDQLTTTFYLVNGWDTFVDNNDSKTFGYQFNWTVSDNTSFIVNGSHGAEQDEDIVSDADSNMRHFWDIILTLKPFEKTAFNLNFDFGTEEEGNGAAGGFAAGSGTGKWWGFSGIVSQEITDYFGLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTV3</accession>
    <name>A0A0M2UTV3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">1-aminocyclopropane-1-carboxylate deaminase</fullName>
            <ecNumber evidence="7">3.5.99.7</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">acdS</name>
        <name evidence="7" type="ORF">BROFUL_01805</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ACC deaminase/D-cysteine desulfhydrase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.99.7" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000188">
        <property type="protein sequence ID" value="KKO19493.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19493">
        <property type="protein sequence ID" value="KKO19493"/>
        <property type="gene ID" value="BROFUL_01805"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008660">
        <property type="term" value="F:1-aminocyclopropane-1-carboxylate deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008152">
        <property type="term" value="P:metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027278">
        <property type="entry name" value="ACCD_DCysDesulf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43780">
        <property type="entry name" value="PTHR43780"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006278">
        <property type="entry name" value="ACCD_DCysDesulf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 5" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PALP" evidence="6">
        <location>
            <begin position="38"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="4">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="5">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008639"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR006278-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR006278-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19493.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="336" mass="37314" checksum="3CA300702895165E" modified="2015-11-11" version="1">MIRENEFSRNVAVACGLETAEAFRLQSRIHRLRWFDRSDIWVKRDDELGLGVSGTKLRKHASIIPFLKQQGIEEVVVIGGAHSNNVLSAAQTLTENNIRITPFLLGPPSQRRGNARLLSLFVDDRGIHWISRAQWADCEVLANDYAEKRRAEGVKIFVLPEGAHHPLAVPGSLSLLVDILRNEREAGVRFDHIFIDSGTGMVAQSLLAGATALEKKSRFHVVVLAGSFDDFRAGLSRVMQYAESFLGVSLRSLPDYRIYYPASARSFGSANKTIFKEIQRIAREDGILTDPVYSAKLFLTARHVILNSQLKGNILLIHSGGGLALTGFMDHPLFTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTV6</accession>
    <name>A0A0M2UTV6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4268 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02883</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000272">
        <property type="protein sequence ID" value="KKO18421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18421">
        <property type="protein sequence ID" value="KKO18421"/>
        <property type="gene ID" value="BROFUL_02883"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3570"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025364">
        <property type="entry name" value="DUF4268"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011856">
        <property type="entry name" value="tRNA_endonuc-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14088">
        <property type="entry name" value="DUF4268"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4268" evidence="1">
        <location>
            <begin position="173"/>
            <end position="307"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14088"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="318" mass="35911" checksum="3BD9A5F4A1E78EB1" modified="2015-11-11" version="1">MKVLSKLKRLNLREAWTKEAGDFTPWLADNIEYLGAALGMDLELEAREASIGDFSLDLLAKDLGSGRTVVIENQLTQTDHDHLGKLLTYAAGFGASVVIWVAETIREEHRQALEWLNQRTDTDTEFFGVVVELLQIDDSKPAYNFKPVVFPNEWQKTKRSQTIGRVSTKGEAYRQYYQPLIDELREKHKFTGARIAQPQSWYAFSAGTSGVPVSAVFAGDGTARVELYIDLGTVEANKALFDWLQNQKDSIEKQLGFSLQWERLDGKRASRIYVSRSGSIESTAEELEQLRKWQIEKLLHFKKILAPLVKAGVKQASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTY4</accession>
    <name>A0A0M2UTY4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative acyl-CoA thioester hydrolase</fullName>
            <ecNumber evidence="5">3.1.2.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02015</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the acyl coenzyme A hydrolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.2.-" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000204">
        <property type="protein sequence ID" value="KKO19277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19277">
        <property type="protein sequence ID" value="KKO19277"/>
        <property type="gene ID" value="BROFUL_02015"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016790">
        <property type="term" value="F:thiolester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040170">
        <property type="entry name" value="Cytosol_ACT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033120">
        <property type="entry name" value="HOTDOG_ACOT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11049">
        <property type="entry name" value="PTHR11049"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51770">
        <property type="entry name" value="HOTDOG_ACOT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HotDog ACOT-type" evidence="4">
        <location>
            <begin position="5"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="HotDog ACOT-type" evidence="4">
        <location>
            <begin position="167"/>
            <end position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="312" mass="34506" checksum="694869B6F527FBC9" modified="2015-11-11" version="1">MISIASTLIEMLHHIFPQQANPAGTLYGGWMMNWIVTAGNLAALRLTKRPLLLASIEDLFFLQPVRIGDVVTVRAVVEHIGNTSLEVEAVVFCRAFSDEDKLCTRARMSFVSVDAQGKPVPIGQQIEPSDDKEMKLYQYAREIREGRMARIAQRKQRVHDTNLEDAGQLSLRVHRLVFPEDALYGTLMYGGKLLLILDEIMAIMAMKFAKGTIVTASLDALDFYHPIYVGNVLTLATSLNYVGRSSMEIGVKVLAENPISNTVHHTCTAYSTCVKVDTTGSPCPLTSFVPVTDVGKRRWLRLSGENSAACCD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU32</accession>
    <name>A0A0M2UU32_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03332</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000305">
        <property type="protein sequence ID" value="KKO17989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17989">
        <property type="protein sequence ID" value="KKO17989"/>
        <property type="gene ID" value="BROFUL_03332"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4106"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="125" mass="14858" checksum="886F479FD0CEC23D" modified="2015-11-11" version="1">MTTIHWRTFLRSPLDNATKFFKHVRTIVLVKSNDLLELAVFEFDTTIYPADQFMWKWNERNNLEGYEKPSNLHKFTWQPHGSQFTIIENVPKDRLALRIKQPPKLDSNAILKALKFNSSWIEILK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUE4</accession>
    <name>A0A0M2UUE4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01605</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19673">
        <property type="protein sequence ID" value="KKO19673"/>
        <property type="gene ID" value="BROFUL_01605"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0110001">
        <property type="term" value="C:toxin-antitoxin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008201">
        <property type="entry name" value="HepT-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01934">
        <property type="entry name" value="DUF86"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-1277">Toxin-antitoxin system</keyword>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="46"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="76" mass="9001" checksum="E0C6EB4F0E755EC5" modified="2015-11-11" version="1">MIIAQRNVIVHEYGEIKQDRIWALAENRIPELVELIKPLLPSLGYLPTEKELKDELEREKRMLETEFKLLKSKGKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUF3</accession>
    <name>A0A0M2UUF3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nucleotidyltransferase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03201</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000293">
        <property type="protein sequence ID" value="KKO18099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18099">
        <property type="protein sequence ID" value="KKO18099"/>
        <property type="gene ID" value="BROFUL_03201"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002934">
        <property type="entry name" value="Polymerase_NTP_transf_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01909">
        <property type="entry name" value="NTP_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NTP_transf_2" evidence="1">
        <location>
            <begin position="12"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="108" mass="12392" checksum="CFC1FE561F3B9E78" modified="2015-11-11" version="1">MVYTKDQINRIIDEFLQKIRSRHSLKQAYLFGSYAKGTASASSDIDMALVFDHLDQSGLFDEAFEVFHEAQAFNPAIEPICFSKEEFKDELTPIVHEIKHAGIELLRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUL3</accession>
    <name>A0A0M2UUL3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">tRNA threonylcarbamoyladenosine biosynthesis protein TsaE</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaE</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_03118</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the TsaE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000287">
        <property type="protein sequence ID" value="KKO18169.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18169">
        <property type="protein sequence ID" value="KKO18169"/>
        <property type="gene ID" value="BROFUL_03118"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3849"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002949">
        <property type="term" value="P:tRNA threonylcarbamoyladenosine modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003442">
        <property type="entry name" value="T6A_TsaE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02367">
        <property type="entry name" value="TsaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00150">
        <property type="entry name" value="T6A_YjeE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007599"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00019010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00032441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18169.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="156" mass="17196" checksum="DC8F0C679E233E74" modified="2015-11-11" version="1">MNEKGLIFRSTSTEETVEYGKRLGMLLSPGDVVALIGELGAGKTTLVKGVVLGLGVTDVRAVKSPTFSLVHTYRGRMPVYHFDAYRLKDSQEMLDIGSDEMIYGNGVALVEWANNVPGCLPEACLRITLWAISQHERTIEMWGSGSRYDKIINDLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUN0</accession>
    <name>A0A0M2UUN0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NAD-dependent epimerase/dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03142</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000287">
        <property type="protein sequence ID" value="KKO18189.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18189">
        <property type="protein sequence ID" value="KKO18189"/>
        <property type="gene ID" value="BROFUL_03142"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3875"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016040">
        <property type="entry name" value="NAD(P)-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13460">
        <property type="entry name" value="NAD_binding_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD(P)-bd_dom" evidence="1">
        <location>
            <begin position="12"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18189.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="306" mass="34321" checksum="F536DDC1798A5E03" modified="2015-11-11" version="1">MGSNEEFHVVTGAFGYTGKYIAQKLLSLGKKVRTITGHPNRLNPFGDKIGISPFSFDNPAELVKSLRGAITLYNTYWVRFSYKHVTFDKAVENTKVLIRAAEEAGVRKIVHISITNASESSPFPYFRGKGVLEKAVCQSGMSYAIIRPTVLFGHEDILINNIAWLLRRFPFFAILGSGAYQLQPVFVEDVAELAVQAGQYEENILLDAVGPEIYAFREMVQLIAEKVRSKAKIIYLRPELTLLFSRLIGYVVNDVILTRDEGYGLMSNLLISGNPPTGRTRLSAWLTDHEEDIGIKYASELGRHYH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUN2</accession>
    <name>A0A0M2UUN2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01990</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19330">
        <property type="protein sequence ID" value="KKO19330"/>
        <property type="gene ID" value="BROFUL_01990"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="140" mass="15650" checksum="9D5EAB3D6A13D82A" modified="2015-11-11" version="1">MISELGFWPRFVLAVLATWRITHLLAREDGPGGLIARFRARLGSGLAGKLMDCFQCLSFWIAAPMAFFVCRKPLDMLFTWLALSGAACLLERVGSEPVVIQPISQEKKGGFDNGMLWSEARDTQEHVNPEDDATRHTTRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUQ4</accession>
    <name>A0A0M2UUQ4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PINc domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02553</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000238">
        <property type="protein sequence ID" value="KKO18721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18721">
        <property type="protein sequence ID" value="KKO18721"/>
        <property type="gene ID" value="BROFUL_02553"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002716">
        <property type="entry name" value="PIN_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01850">
        <property type="entry name" value="PIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PINc" evidence="1">
        <location>
            <begin position="2"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="115" mass="13149" checksum="2304A4205BB9240C" modified="2015-11-11" version="1">MLYMSVVVMEELYAGAFDTQSIKLLDTLYKTFKNLNRLLVPEAADWQGAGKVIAKIGKKYGFEDIFLSKITHDVLIAASARRIGAIVITNNRKDFLRIQEFVDFKFYQGYEEQSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUS2</accession>
    <name>A0A0M2UUS2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">NADH-quinone oxidoreductase subunit K</fullName>
            <ecNumber evidence="5">7.1.1.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">NADH dehydrogenase I subunit K</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">NDH-1 subunit K</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5 6" type="primary">nuoK</name>
        <name evidence="6" type="ORF">BROFUL_03080</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>a quinone + 5 H(+)(in) + NADH = a quinol + 4 H(+)(out) + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:57888"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="5">NDH-1 is composed of 14 different subunits. Subunits NuoA, H, J, K, L, M, N constitute the membrane sector of the complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the complex I subunit 4L family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.-" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000285">
        <property type="protein sequence ID" value="KKO18234.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18234">
        <property type="protein sequence ID" value="KKO18234"/>
        <property type="gene ID" value="BROFUL_03080"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3806"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050136">
        <property type="term" value="F:NADH dehydrogenase (quinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048038">
        <property type="term" value="F:quinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042773">
        <property type="term" value="P:ATP synthesis coupled electron transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01456">
        <property type="entry name" value="NDH1_NuoK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001133">
        <property type="entry name" value="NADH_UbQ_OxRdtase_chain4L/K"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039428">
        <property type="entry name" value="NUOK/Mnh_C1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11434">
        <property type="entry name" value="PTHR11434"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00420">
        <property type="entry name" value="Oxidored_q2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-0874">Quinone</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-1278">Translocase</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <keyword evidence="5" id="KW-0830">Ubiquinone</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="31"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="60"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18234.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="100" mass="11066" checksum="BB4BDD0FCA514947" modified="2015-11-11" version="1">MITITHYLVLSAILFTIGVIGVLIRRNAIVIFMCIELMLNAVNLSFVACAHYLNSMQGQLFVFFTMTVAAAEAAVGLAIIVAVFRNKETVNIDDVNIMKW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUU1</accession>
    <name>A0A0M2UUU1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03064</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000284">
        <property type="protein sequence ID" value="KKO18254.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18254">
        <property type="protein sequence ID" value="KKO18254"/>
        <property type="gene ID" value="BROFUL_03064"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18254.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="37" mass="4316" checksum="438930AB45BB1530" modified="2015-11-11" version="1">MGWHGQAVLVRVFIIPFMLDDYNGQSWLVYSNLKMDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUU3</accession>
    <name>A0A0M2UUU3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 8">30S ribosomal protein S3</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">rpsC</name>
        <name evidence="12" type="ORF">BROFUL_01917</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7 8">Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Part of the 30S ribosomal subunit. Forms a tight complex with proteins S10 and S14.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 8 10">Belongs to the universal ribosomal protein uS3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19390.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19390">
        <property type="protein sequence ID" value="KKO19390"/>
        <property type="gene ID" value="BROFUL_01917"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2386"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1140.32">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01309_B">
        <property type="entry name" value="Ribosomal_S3_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004087">
        <property type="entry name" value="KH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004044">
        <property type="entry name" value="KH_dom_type_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009019">
        <property type="entry name" value="KH_sf_prok-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005704">
        <property type="entry name" value="Ribosomal_S3_bac-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001351">
        <property type="entry name" value="Ribosomal_S3_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036419">
        <property type="entry name" value="Ribosomal_S3_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018280">
        <property type="entry name" value="Ribosomal_S3_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07650">
        <property type="entry name" value="KH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00189">
        <property type="entry name" value="Ribosomal_S3_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00322">
        <property type="entry name" value="KH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54814">
        <property type="entry name" value="SSF54814"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54821">
        <property type="entry name" value="SSF54821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01009">
        <property type="entry name" value="rpsC_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50823">
        <property type="entry name" value="KH_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00548">
        <property type="entry name" value="RIBOSOMAL_S3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8 10" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5 8 10" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4 8 9" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 8" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="KH type-2" evidence="11">
        <location>
            <begin position="39"/>
            <end position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00024998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01309"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO19390.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="232" mass="25756" checksum="2D5D231DF47AB561" modified="2015-11-11" version="1">MGQKVCPIGLRLGITQGWKSIWYADKKDFGALLVEDQKIRKIIKKSYGFAGIPCIAIERTRQDAKITLHTARPGLIIGRKGAEVDKLKDEIQRFIGREVVIKIKEITRPELYAQLVAENIAEQLEKRAAFRRAMKKAMDSSVDAGAKGVKMQVAGRLGGAEIARTEKMSFGSVPLHTLRADVDYGFAEAKTTYGVIGIKVWIYKGLISSEKEMKYASDAKEGEVQEVPKAEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUV5</accession>
    <name>A0A0M2UUV5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF5615 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02551</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18771">
        <property type="protein sequence ID" value="KKO18771"/>
        <property type="gene ID" value="BROFUL_02551"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041049">
        <property type="entry name" value="DUF5615"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18480">
        <property type="entry name" value="DUF5615"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF5615" evidence="1">
        <location>
            <begin position="1"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18480"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="116" mass="13361" checksum="0C345C3CF3259556" modified="2015-11-11" version="1">MRFLADENIFPSLVSHLLKSGHDIKAIQEFCLHGATDDTIVDLAIKEERTIITFDKHFGDILRYPPQNLFGTILIRIHPPLLEDILFAIDNLFQAYHANTFKGRLVVLSKQGYRIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUX1</accession>
    <name>A0A0M2UUX1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NAD(P)H-hydrate epimerase</fullName>
            <ecNumber evidence="1">5.1.99.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">NAD(P)HX epimerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">nnrE</name>
        <name evidence="3" type="ORF">BROFUL_01445</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(6R)-NADHX = (6S)-NADHX</text>
            <dbReference type="Rhea" id="RHEA:32215"/>
            <dbReference type="ChEBI" id="CHEBI:64074"/>
            <dbReference type="ChEBI" id="CHEBI:64075"/>
            <dbReference type="EC" id="5.1.99.6"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(6R)-NADPHX = (6S)-NADPHX</text>
            <dbReference type="Rhea" id="RHEA:32227"/>
            <dbReference type="ChEBI" id="CHEBI:64076"/>
            <dbReference type="ChEBI" id="CHEBI:64077"/>
            <dbReference type="EC" id="5.1.99.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </cofactor>
        <text evidence="1">Binds 1 potassium ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the NnrE/AIBP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.1.99.6" evidence="1"/>
    <dbReference type="EMBL" id="LAQJ01000147">
        <property type="protein sequence ID" value="KKO19843.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19843">
        <property type="protein sequence ID" value="KKO19843"/>
        <property type="gene ID" value="BROFUL_01445"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1782"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052856">
        <property type="term" value="F:NADHX epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052857">
        <property type="term" value="F:NADPHX epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10260">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01966">
        <property type="entry name" value="NADHX_epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004443">
        <property type="entry name" value="YjeF_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036652">
        <property type="entry name" value="YjeF_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032976">
        <property type="entry name" value="YJEFN_prot_NAXE-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13232">
        <property type="entry name" value="PTHR13232"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03853">
        <property type="entry name" value="YjeF_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64153">
        <property type="entry name" value="SSF64153"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00197">
        <property type="entry name" value="yjeF_nterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51385">
        <property type="entry name" value="YJEF_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0520">NAD</keyword>
    <keyword evidence="1" id="KW-0521">NADP</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1" id="KW-0630">Potassium</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="YjeF N-terminal" evidence="2">
        <location>
            <begin position="10"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="region of interest" description="NADPHX" evidence="1">
        <location>
            <begin position="60"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="region of interest" description="NADPHX" evidence="1">
        <location>
            <begin position="138"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="61"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="167"/>
        </location>
        <ligand>
            <name>(6S)-NADPHX</name>
            <dbReference type="ChEBI" id="CHEBI:64076"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="170"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19843.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="224" mass="24371" checksum="51E0573B6C1643A3" modified="2015-11-11" version="1">MEKTLTREEMRELDRKAIEEYKIPGIILMENAGRNVAEEVLKMIGSHRQANVAVLCGKGNNGGDGFVIARHLHNHCIPAPVFLVAKIPDTVLDGDAGTNLRILLRMKIPVREVLHTSEVNEILKALHGYDIIVDALFGTGLSGEVREPFKTLIDGVNTLNKPRVSVDIPSGLDCNTGRVLGSAIRAHKTVTFAASKRGFYLESGPAHTGEIIVTGISIPREILP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV01</accession>
    <name>A0A0M2UV01_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">VWFA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01834</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000190">
        <property type="protein sequence ID" value="KKO19455.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19455">
        <property type="protein sequence ID" value="KKO19455"/>
        <property type="gene ID" value="BROFUL_01834"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2282"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01467">
        <property type="entry name" value="vWA_BatA_type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024163">
        <property type="entry name" value="Aerotolerance_reg_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011933">
        <property type="entry name" value="Double_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033881">
        <property type="entry name" value="vWA_BatA_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07584">
        <property type="entry name" value="BatA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00092">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02226">
        <property type="entry name" value="two_anch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="304"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="domain" description="VWFA" evidence="2">
        <location>
            <begin position="87"/>
            <end position="285"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19455.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="332" mass="37168" checksum="14698233DFB7E319" modified="2015-11-11" version="1">MIFRDPLLLIFLVVVPPLIYVYFRGRGNDQVVFPSLGVLKKIKPSFAQRYRHILIVLRSTALVLLVIALSRPQYGNEQTKVVTEGIDIVLTVDVSGSMLAEDFEIGGQRYNRLHVIKPVVKDFIQKRTNDRIGLVVFAGRPYTQCPLTLDYGMLLQLLEKAQIGMVEDGTAIGSALGSSIERLKDTRAKSKVIILLTDGRNNAGEIDPFTAAEIARTFGIKIYTIGAGTKGLAPFPAVDIFGNRVMKQVKIDIDDDALKEIAKITGGNYYRATDTESLREIYHQIDKLEKTESEVTQYTEYNELFHYFLLPAFGLLLVELGLTKTKLRKLPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV32</accession>
    <name>A0A0M2UV32_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ABC transporter substrate binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01363</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000141">
        <property type="protein sequence ID" value="KKO19913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19913">
        <property type="protein sequence ID" value="KKO19913"/>
        <property type="gene ID" value="BROFUL_01363"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026045">
        <property type="entry name" value="Ferric-bd"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002825">
        <property type="entry name" value="CfbpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644099" evidence="2">
        <location>
            <begin position="21"/>
            <end position="333"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="333" mass="36646" checksum="1CC85EE8CFB9E48D" modified="2015-11-11" version="1">MKIVLIACLTISMLTKVCFAGNEVIVYTSEDKIFSEPVLQAFGKKTGIKVRAIFDTEETKSTGLINRLIAEKDNPQADVFWSGDPVRPVLLAIKGLTAPYVSRTASDIPKDYRDPEGHWTGFSARARIILYNTNLVNMDERPLSLFDLSKPQWRGQVAIANPLFGTTSIHMAALFITLGDEKAKQFLNDLKANGVKIVSSNGEVKRLVARGEVKVGITDTDDANVAIQEGSPVKVMFPDQTGIGTLIMPNMVCLMKGSPNPENGKKLVDYLLSAEVEKSLAWAACAQMPLRYDVRTPADVLTIDAIKGMDIHYHDIARKLDEIGGFLKQWAGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV61</accession>
    <name>A0A0M2UV61_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Phosphoheptose isomerase</fullName>
            <ecNumber evidence="9">5.3.1.28</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Sedoheptulose 7-phosphate isomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">gmhA</name>
        <name evidence="11" type="ORF">BROFUL_02895</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>2 D-sedoheptulose 7-phosphate = D-glycero-alpha-D-manno-heptose 7-phosphate + D-glycero-beta-D-manno-heptose 7-phosphate</text>
            <dbReference type="Rhea" id="RHEA:27489"/>
            <dbReference type="ChEBI" id="CHEBI:57483"/>
            <dbReference type="ChEBI" id="CHEBI:60203"/>
            <dbReference type="ChEBI" id="CHEBI:60204"/>
            <dbReference type="EC" id="5.3.1.28"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="9">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="9">Carbohydrate biosynthesis; D-glycero-D-manno-heptose 7-phosphate biosynthesis; D-glycero-alpha-D-manno-heptose 7-phosphate and D-glycero-beta-D-manno-heptose 7-phosphate from sedoheptulose 7-phosphate: step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="9">The reaction produces a racemic mixture of D-glycero-alpha-D-manno-heptose 7-phosphate and D-glycero-beta-D-manno-heptose 7-phosphate.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the SIS family. GmhA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.28" evidence="9"/>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18389.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18389">
        <property type="protein sequence ID" value="KKO18389"/>
        <property type="gene ID" value="BROFUL_02895"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00041">
        <property type="reaction ID" value="UER00436"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008968">
        <property type="term" value="F:D-sedoheptulose 7-phosphate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:2001061">
        <property type="term" value="P:D-glycero-D-manno-heptose 7-phosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd05006">
        <property type="entry name" value="SIS_GmhA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00067">
        <property type="entry name" value="GmhA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035461">
        <property type="entry name" value="GmhA/DiaA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004515">
        <property type="entry name" value="Phosphoheptose_Isoase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001347">
        <property type="entry name" value="SIS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13580">
        <property type="entry name" value="SIS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51464">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="4 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 9 11" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 9" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="SIS" evidence="10">
        <location>
            <begin position="33"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="9">
        <location>
            <begin position="48"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="9">
        <location>
            <begin position="90"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="9">
        <location>
            <begin position="116"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="57"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="121"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="168"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="176"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000348"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00067"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO18389.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="192" mass="20240" checksum="5E4267A27AC2DEC1" modified="2015-11-11" version="1">MNDIEVQLQESIDTKKALLVTHPDVIRAIAGTLITAFKNGHRLYLIGNGGSAADAQHIAGELIGRFKMNRRPLPAVALTTDTSVMTALANDFGYDTCFARQVEALAGPGDVVLALSTSGNSKGILSAVQIAKARGAMTIGFTGKDGGLLKESVDICLQIPSANTPRIQECHITVGHILCSLIEKELFGTGPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVA7</accession>
    <name>A0A0M2UVA7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01528</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000158">
        <property type="protein sequence ID" value="KKO19752.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19752">
        <property type="protein sequence ID" value="KKO19752"/>
        <property type="gene ID" value="BROFUL_01528"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19752.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="918" mass="103525" checksum="B1455632837EDAA6" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVD5</accession>
    <name>A0A0M2UVD5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01746</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000181">
        <property type="protein sequence ID" value="KKO19545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19545">
        <property type="protein sequence ID" value="KKO19545"/>
        <property type="gene ID" value="BROFUL_01746"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="49" mass="5601" checksum="6AB7F385A13CF2A2" modified="2015-11-11" version="1">MKEGLLRFARNDNVPYVIKDIASVIARVLSEAISRFHNEELVAAVPRYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVH6</accession>
    <name>A0A0M2UVH6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putative biopolymer transporter protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02774</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the ExbD/TolR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000264">
        <property type="protein sequence ID" value="KKO18504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18504">
        <property type="protein sequence ID" value="KKO18504"/>
        <property type="gene ID" value="BROFUL_02774"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003400">
        <property type="entry name" value="ExbD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30558">
        <property type="entry name" value="PTHR30558"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02472">
        <property type="entry name" value="ExbD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0653">Protein transport</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005811"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="137" mass="15609" checksum="D00A6277163AE125" modified="2015-11-11" version="1">MRFREKRVTKSIINLTPMVDMLFLILLFFLVTSSFMEQPNIKLELPSTKYASTSKLEERVLTISQEGKLFFQNEPVERKDLISVLKSAFSRQDDKTLVLRADKNVSYGVIVDVMDAAKGAGLRRIVAPTILESEKKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVM6</accession>
    <name>A0A0M2UVM6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02732</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000254">
        <property type="protein sequence ID" value="KKO18564.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18564">
        <property type="protein sequence ID" value="KKO18564"/>
        <property type="gene ID" value="BROFUL_02732"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18564.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="84" mass="10033" checksum="C944F91DBE7981F8" modified="2015-11-11" version="1">MLKEYYRCIVEPVVKKETIMRLCDFFVCPNCGYDEKFKVYTSNVQVIYQSPEVGIRSFESSVLPNLRHSDNYIECQLCFEKFRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVP9</accession>
    <name>A0A0M2UVP9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Exopolysaccharide biosynthesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_01148</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000124">
        <property type="protein sequence ID" value="KKO20123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20123">
        <property type="protein sequence ID" value="KKO20123"/>
        <property type="gene ID" value="BROFUL_01148"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009103">
        <property type="term" value="P:lipopolysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002586">
        <property type="entry name" value="CobQ/CobB/MinD/ParA_Nub-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025497">
        <property type="entry name" value="DUF4388"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032807">
        <property type="entry name" value="GNVR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003856">
        <property type="entry name" value="LPS_length_determ_N_term"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037257">
        <property type="entry name" value="T2SS_E_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01656">
        <property type="entry name" value="CbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14332">
        <property type="entry name" value="DUF4388"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13807">
        <property type="entry name" value="GNVR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02706">
        <property type="entry name" value="Wzz"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160246">
        <property type="entry name" value="SSF160246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="30"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="408"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="domain" description="Wzz" evidence="8">
        <location>
            <begin position="18"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="domain" description="GNVR" evidence="9">
        <location>
            <begin position="359"/>
            <end position="429"/>
        </location>
    </feature>
    <feature type="domain" description="CbiA" evidence="7">
        <location>
            <begin position="511"/>
            <end position="824"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4388" evidence="10">
        <location>
            <begin position="579"/>
            <end position="710"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF13807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF14332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO20123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="863" mass="97356" checksum="5CD3528E265B09EE" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW03</accession>
    <name>A0A0M2UW03_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF5981 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02630</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18679">
        <property type="protein sequence ID" value="KKO18679"/>
        <property type="gene ID" value="BROFUL_02630"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3264"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022026">
        <property type="entry name" value="MTHFR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12225">
        <property type="entry name" value="DUF5981"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF5981" evidence="1">
        <location>
            <begin position="111"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18679.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="224" mass="24533" checksum="BEBE567B305FDA67" modified="2015-11-11" version="1">MIVASSKPFPEIKQMLSGFKKVCVLGCGSCVTICHTGGEKQVAELAAQLRLAAKLEGRQLEVIEDSTLRQCEWEFIRDIQGVVKDCDAVISIACGVGVQYMAERFPRIRIFPGLNTTFMGGPVEQGVFWERCAGCGNCIVGTTGGLCPVSRCAKSLLNGPCGGSQNGKCEVSRETPCVWHQIYDQLDIQQLLATMETIVPPKDWTTGMENHPRKMVLEHLVVKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW33</accession>
    <name>A0A0M2UW33_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01220</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000133">
        <property type="protein sequence ID" value="KKO20057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20057">
        <property type="protein sequence ID" value="KKO20057"/>
        <property type="gene ID" value="BROFUL_01220"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1512"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="104" mass="11363" checksum="52FC199180288B74" modified="2015-11-11" version="1">MSNIDRKERHITMSKKTSTETKSDSVSLADEEGVKQILMNSVLGLWDVVNNLTRLKPSRRDRYRVTIFGSARAKAGTFGYEETKRAAAALAKMGCDIITGGGPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW76</accession>
    <name>A0A0M2UW76_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02094</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000209">
        <property type="protein sequence ID" value="KKO19216.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19216">
        <property type="protein sequence ID" value="KKO19216"/>
        <property type="gene ID" value="BROFUL_02094"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="136" mass="15982" checksum="599F54950995C0BA" modified="2015-11-11" version="1">MSERLLRFTRNDNVPCAIKVHGRCHCEGLFRSNLPVFIKEIWLRLRRAIILPYKSFLFLQVFSQPYLSLVRRYCLFIREGLLRFTRNDNMPCAIKVHGRCHCEGPFSKQSPRFHKGNLVAAVLRYEIVIPESLCNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWC8</accession>
    <name>A0A0M2UWC8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha/beta hydrolase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01157</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000124">
        <property type="protein sequence ID" value="KKO20132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20132">
        <property type="protein sequence ID" value="KKO20132"/>
        <property type="gene ID" value="BROFUL_01157"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022742">
        <property type="entry name" value="Hydrolase_4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12146">
        <property type="entry name" value="Hydrolase_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hydrolase_4" evidence="1">
        <location>
            <begin position="66"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="299" mass="34464" checksum="52A2FC1160680136" modified="2015-11-11" version="1">MSHIYSTKNPGSQCTEKPVFIQTRNYDIFGILHIPDTSSSRDKVVVILLTGASIPRTHRNRMWVILARQLAESGFFSFRFDYRGLGESTGLFEDVSIDKVLSQDLLHIINFLTNLINPGKIILVGECFGARTALSMVNLIKFHGLVFLAAPTINNAERVTHQAGRKDITHYINKLKWQRWGTFLNTERIKRNFIFFIKRIHNKWAGINTNLLISESFSNQLSTLVKKGIPSLMIYGTRDEFYENMKLFLQKIDPEKRKNVEFYEIQGEKAHGLVVDVLVQETVIAKILKWIVSRYLIMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWF4</accession>
    <name>A0A0M2UWF4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01121</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20162">
        <property type="protein sequence ID" value="KKO20162"/>
        <property type="gene ID" value="BROFUL_01121"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="36" mass="4439" checksum="0A4825F1FA018F5D" modified="2015-11-11" version="1">MYFQKKLIDHYPLNFDEDAMRIVEIKGRKVIFPRKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWG0</accession>
    <name>A0A0M2UWG0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02437</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000232">
        <property type="protein sequence ID" value="KKO18844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18844">
        <property type="protein sequence ID" value="KKO18844"/>
        <property type="gene ID" value="BROFUL_02437"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="94"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="126"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="183" mass="20794" checksum="AC85A6A97CE935A2" modified="2015-11-11" version="1">MAQPRHNNLPKELKVMVSDLFKQKERFEKGIVRRLNGSYATVEILRKNSPECTNCSSCAGADDKPQLFEVKAFPGLKAGERVTLQTIGHSPYTGMILIFILPLVSLVMGSFLGRKWHFLYPNSSDVRMISCGFIFFLLSLVAVSIYEKTMRHQKRIGRKIISRDTRDSINLIPASSHIFHHCL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWG5</accession>
    <name>A0A0M2UWG5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 8">Methionyl-tRNA formyltransferase</fullName>
            <ecNumber evidence="4 8">2.1.2.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8 11" type="primary">fmt</name>
        <name evidence="11" type="ORF">BROFUL_01131</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 8">Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>(6S)-10-formyltetrahydrofolate + L-methionyl-tRNA(fMet) = (6S)-5,6,7,8-tetrahydrofolate + H(+) + N-formyl-L-methionyl-tRNA(fMet)</text>
            <dbReference type="Rhea" id="RHEA:24380"/>
            <dbReference type="Rhea" id="RHEA-COMP:9952"/>
            <dbReference type="Rhea" id="RHEA-COMP:9953"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:57454"/>
            <dbReference type="ChEBI" id="CHEBI:78530"/>
            <dbReference type="ChEBI" id="CHEBI:78844"/>
            <dbReference type="EC" id="2.1.2.9"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the Fmt family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.9" evidence="4 8"/>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20172.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20172">
        <property type="protein sequence ID" value="KKO20172"/>
        <property type="gene ID" value="BROFUL_01131"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1401"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004479">
        <property type="term" value="F:methionyl-tRNA formyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd08646">
        <property type="entry name" value="FMT_core_Met-tRNA-FMT_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd08704">
        <property type="entry name" value="Met_tRNA_FMT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00182">
        <property type="entry name" value="Formyl_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005794">
        <property type="entry name" value="Fmt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005793">
        <property type="entry name" value="Formyl_trans_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002376">
        <property type="entry name" value="Formyl_transf_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036477">
        <property type="entry name" value="Formyl_transf_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011034">
        <property type="entry name" value="Formyl_transferase-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044135">
        <property type="entry name" value="Met-tRNA-FMT_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041711">
        <property type="entry name" value="Met-tRNA-FMT_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02911">
        <property type="entry name" value="Formyl_trans_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00551">
        <property type="entry name" value="Formyl_trans_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50486">
        <property type="entry name" value="SSF50486"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53328">
        <property type="entry name" value="SSF53328"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00460">
        <property type="entry name" value="fmt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Formyl_trans_N" evidence="9">
        <location>
            <begin position="2"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="domain" description="Formyl_trans_C" evidence="10">
        <location>
            <begin position="198"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="region of interest" description="Tetrahydrofolate (THF) binding" evidence="8">
        <location>
            <begin position="104"/>
            <end position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00016014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00182"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02911"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO20172.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="314" mass="34330" checksum="0C451A6FA0B36389" modified="2015-11-11" version="1">MGTPEFAVPSLCSLATSSHKIRAVVTQPDRPRGRSKTPSPSSVKEKALERGLAILQPVNVNDEPVVKHLRDIAPECIVVVAFGQFLSNAILQLPRYRCLNIHASLLPKYRGAAPINWAIIQGETITGVTAVVMTARMDAGDMIAQKTTPLSSDENAGALEKRLSVMGAELLLDALRLIETGKATYTPQDEQGVSFAPKLKKEDGFILWSHETQKIHNQIRGMTPAPGAHAYFLKNDSQEKARILIQKTQIHDVSKTKPPLNPGMIQEIAPCGIHVATKDGVICITQLQPEGKRVMDAQEYIRGHKIRGGDMFVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWK8</accession>
    <name>A0A0M2UWK8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01313</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000138">
        <property type="protein sequence ID" value="KKO19965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19965">
        <property type="protein sequence ID" value="KKO19965"/>
        <property type="gene ID" value="BROFUL_01313"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="80" mass="9306" checksum="E3885D5DF11B8165" modified="2015-11-11" version="1">MLKPKLLDQVRDAIMGKARRMMTEEAYVYWIKQCILFMLVQTYSLNQTFCATPYALNKRQSWKMPNVPVQSGTSGPARNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWU1</accession>
    <name>A0A0M2UWU1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00939</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000116">
        <property type="protein sequence ID" value="KKO20307.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20307">
        <property type="protein sequence ID" value="KKO20307"/>
        <property type="gene ID" value="BROFUL_00939"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20307.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="83" mass="9747" checksum="93BB4AD4F71AA3F9" modified="2015-11-11" version="1">MTLKDVAQEFKLDWNTVKTLDKEYMQEQLRRYPIAAPGVIGIDEVSLRKGHTYRIVVSDLERRRPIWFGGKDGSKESLDIFYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWU5</accession>
    <name>A0A0M2UWU5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">DNA repair protein RecN</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4 5">Recombination protein N</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_01244</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 5">May be involved in recombinational repair of damaged DNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the RecN family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000135">
        <property type="protein sequence ID" value="KKO20045.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20045">
        <property type="protein sequence ID" value="KKO20045"/>
        <property type="gene ID" value="BROFUL_01244"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1541"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004604">
        <property type="entry name" value="DNA_recomb/repair_RecN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003395">
        <property type="entry name" value="RecF/RecN/SMC_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11059">
        <property type="entry name" value="PTHR11059"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02463">
        <property type="entry name" value="SMC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003128">
        <property type="entry name" value="RecN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00634">
        <property type="entry name" value="recN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5" id="KW-0234">DNA repair</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SMC_N" evidence="6">
        <location>
            <begin position="12"/>
            <end position="528"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00033408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR003128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02463"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20045.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="582" mass="65503" checksum="07DE9C2022C7F53F" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWU8</accession>
    <name>A0A0M2UWU8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00949</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000116">
        <property type="protein sequence ID" value="KKO20317.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20317">
        <property type="protein sequence ID" value="KKO20317"/>
        <property type="gene ID" value="BROFUL_00949"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1196"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003010">
        <property type="entry name" value="C-N_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036526">
        <property type="entry name" value="C-N_Hydrolase_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00795">
        <property type="entry name" value="CN_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56317">
        <property type="entry name" value="SSF56317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50263">
        <property type="entry name" value="CN_HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CN hydrolase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20317.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="264" mass="29674" checksum="95A02D2007E58E46" modified="2015-11-11" version="1">MKVGFLQTSPFFGKKDENIERAVIMIQSLQADLIVLPELFNTGYQFASREEVIALAEEVPEGQTTRALMKLSKEKGVHLVAGLVERDQGRCYNSSILVGPQGFIGCYRKLHLFYHEKQWFEPGNRGLTVYDIGKAKVGVMICFDWFFPEVARYLAIQGADIICHPANLVLPYCPQAMITRCIENRVFAITANRIGTELRTEETLAFIGTSQIVGTKGEMLCRASPDREEAMTVEIGPTVARDKNITPMNHLFSDRRFQIVSSCT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWW3</accession>
    <name>A0A0M2UWW3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MoaA/nirJ/ppqE family of cofactor synthesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02283</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO18989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18989">
        <property type="protein sequence ID" value="KKO18989"/>
        <property type="gene ID" value="BROFUL_02283"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2846"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023885">
        <property type="entry name" value="4Fe4S-binding_SPASM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017200">
        <property type="entry name" value="PqqE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13186">
        <property type="entry name" value="SPASM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037420">
        <property type="entry name" value="PQQ_syn_pqqE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04085">
        <property type="entry name" value="rSAM_more_4Fe4S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="6">
        <location>
            <begin position="24"/>
            <end position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="350" mass="39823" checksum="10D2A26C3BF7201A" modified="2015-11-11" version="1">MSNTADMVHKLGFAEDEITECLEKRGLLSIELEFTKKCNLRCLYCYSSAGDPFENELNLDELKSVISQAKDLGVKKIILLGGGEPLIYSGVRNIIEYIDSLGLQQVLFTNGTLVTKEWAQFLFHKKVTVITKSNSLNSEVQDILAGRKGVFSNIRKGLKFLLDAGYPNGKASLGIQTIICRQNIAELPSMWIWARENRIIPYFEILTYQGRAKENTDLNVSVSEVKAIFERLEMIDRERFGILWESRPTIASFSCKRHFYSCLINSQGYVQPCPGIDMSVGNIREKPLRDILESSHVITNLRNISEKIEGACKTCEYRYECYGCRGNAYQITGNYLSSDPTCWRFKKNHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWY8</accession>
    <name>A0A0M2UWY8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Radical SAM core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01798</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000188">
        <property type="protein sequence ID" value="KKO19486.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19486">
        <property type="protein sequence ID" value="KKO19486"/>
        <property type="gene ID" value="BROFUL_01798"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045784">
        <property type="entry name" value="Radical_SAM_N2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19864">
        <property type="entry name" value="Radical_SAM_N2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Radical SAM core" evidence="1">
        <location>
            <begin position="305"/>
            <end position="535"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19486.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="959" mass="109445" checksum="76A096AE7F162303" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXC1</accession>
    <name>A0A0M2UXC1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF4159 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01065</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20215">
        <property type="protein sequence ID" value="KKO20215"/>
        <property type="gene ID" value="BROFUL_01065"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025297">
        <property type="entry name" value="DUF4159"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13709">
        <property type="entry name" value="DUF4159"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4159" evidence="2">
        <location>
            <begin position="49"/>
            <end position="247"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13709"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="266" mass="30531" checksum="ACC0214145C5E81E" modified="2015-11-11" version="1">MAYSFSISVSLWFIICRTFRFFICVICAICGFIFLPQNVFAMGEASKVTFAQLEYSGGNWNPRPNTGKRLMWELVKRTSVEARIDTVILRADDANLFEYPFLYMSGDQEFPPFGEREIGNLKLYLEFGGTLLIDDCIGKSDFGFDKSVRREIKRLFANKSLEKLPAEHTIFKSFYLLNQAYGRIVEKSYLEGVTLENRAAIIYSQNDLGGAWSKDPLGTWEYQVTPGGEVQRSMAFRLGINIIMYALTGDYKQDQVHLPFILKRQM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXC4</accession>
    <name>A0A0M2UXC4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00749</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000095">
        <property type="protein sequence ID" value="KKO20527.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20527">
        <property type="protein sequence ID" value="KKO20527"/>
        <property type="gene ID" value="BROFUL_00749"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20527.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="93" mass="10798" checksum="8147847CA65E0483" modified="2015-11-11" version="1">MDNEKKSDRKSTILYGLAFDSKDSHKRITTGEDFYILGGSAETHEILVEKVLEFNKTVKKYGKKLDDLSQSEFNTIAKEVSPKNDKTYWFFPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXC9</accession>
    <name>A0A0M2UXC9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00740</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000094">
        <property type="protein sequence ID" value="KKO20532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20532">
        <property type="protein sequence ID" value="KKO20532"/>
        <property type="gene ID" value="BROFUL_00740"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="57" mass="6324" checksum="018E4AB8EF68B9A9" modified="2015-11-11" version="1">MIGIEICSGEHLCPDFEIPLFHIKFQHQLNGAEADRASFKTLGNSVTVAQMTLDHLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXK9</accession>
    <name>A0A0M2UXK9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Nitrogen regulatory protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00716</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the P(II) protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20597.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20597">
        <property type="protein sequence ID" value="KKO20597"/>
        <property type="gene ID" value="BROFUL_00716"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.907"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030234">
        <property type="term" value="F:enzyme regulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006808">
        <property type="term" value="P:regulation of nitrogen utilization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002187">
        <property type="entry name" value="N-reg_PII"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011322">
        <property type="entry name" value="N-reg_PII-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015867">
        <property type="entry name" value="N-reg_PII/ATP_PRibTrfase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017918">
        <property type="entry name" value="N-reg_PII_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30115">
        <property type="entry name" value="PTHR30115"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00543">
        <property type="entry name" value="P-II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00340">
        <property type="entry name" value="PIIGLNB"/>
    </dbReference>
    <dbReference type="SMART" id="SM00938">
        <property type="entry name" value="P-II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54913">
        <property type="entry name" value="SSF54913"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00638">
        <property type="entry name" value="PII_GLNB_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51343">
        <property type="entry name" value="PII_GLNB_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="modified residue" description="O-UMP-tyrosine" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR602187-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20597.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="112" mass="12610" checksum="31BBCD35E3F23D28" modified="2015-11-11" version="1">MKKIEAIIRPEKFNIVRDALTELGYPGMTVTEVKGHGSQKGISEVWRGRRYRVDLLSKIKVEITVKDTDVEKIVNTIINEAQTGSIGDGKIFVFNVENVYRIRTKESGDTAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXN9</accession>
    <name>A0A0M2UXN9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">GGDEF domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00670</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000088">
        <property type="protein sequence ID" value="KKO20607.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20607">
        <property type="protein sequence ID" value="KKO20607"/>
        <property type="gene ID" value="BROFUL_00670"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GGDEF" evidence="1">
        <location>
            <begin position="1"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20607.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="116" mass="12973" checksum="60E62A4765584D05" modified="2015-11-11" version="1">MEFVRATLIINVTTMLKQRLRKTDILARLGGDEFAALLCQVDRKQTEIIAKQMIEIISQKGRFTQGYPTNVTASIGITLFPTHSNEAQSLLACADQAMYLAKEKGRNGFCFYQGNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXQ4</accession>
    <name>A0A0M2UXQ4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Cobyric acid synthase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">cobQ</name>
        <name evidence="7" type="ORF">BROFUL_00398</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 4">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the CobB/CobQ family. CobQ subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000053">
        <property type="protein sequence ID" value="KKO20873.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20873">
        <property type="protein sequence ID" value="KKO20873"/>
        <property type="gene ID" value="BROFUL_00398"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.495"/>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015420">
        <property type="term" value="F:ABC-type vitamin B12 transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01750">
        <property type="entry name" value="GATase1_CobQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00028">
        <property type="entry name" value="CobQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002586">
        <property type="entry name" value="CobQ/CobB/MinD/ParA_Nub-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033949">
        <property type="entry name" value="CobQ_GATase1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004459">
        <property type="entry name" value="CobQ_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011698">
        <property type="entry name" value="GATase_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21343:SF1">
        <property type="entry name" value="PTHR21343:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01656">
        <property type="entry name" value="CbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07685">
        <property type="entry name" value="GATase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00313">
        <property type="entry name" value="cobQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="3 4" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CbiA" evidence="5">
        <location>
            <begin position="1"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="domain" description="GATase_3" evidence="6">
        <location>
            <begin position="252"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="4">
        <location>
            <position position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF07685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20873.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="423" mass="46754" checksum="6E5059CD524E5774" modified="2015-11-11" version="1">MIQGTGSHVGKSILTCALCRILKQDGYRVAPFKAQNMALNSFVTKDGREMGRAQVAQAEAAGIEPMVEMNPILLKPTGDCGSQVIIMGRPIGNMTAREYYQKKGEFVSIIREAYDTLRNQFDVIVIEGAGSPAEINLKDGDIVNMGMAEMASAPVLLVTDIDRGGAFAWIVGTLELLTESERNRVVGVIFNKFRGDKNILKPGLDMLEERIRKPIVGVIPYLHQLNIDDEDSVSLENISSKKADVPHNNTVDIAVIKLPRISNFTDFAILHHEEGIKIRFVDGACDVGNPDLLIIPGTKNTIDDLLFLVSQGIADEMVRLSKRGVMIMGICGGYQMLGRYIHDPYHVESSNDGIQGLGLLNTVTTFAREKQTFQVKACMLGHENLFRVDDEITGYEIHMGETTYNGHNFVRPFARITERAGKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXT0</accession>
    <name>A0A0M2UXT0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00368</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000047">
        <property type="protein sequence ID" value="KKO20898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20898">
        <property type="protein sequence ID" value="KKO20898"/>
        <property type="gene ID" value="BROFUL_00368"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="118" mass="14054" checksum="D162AEA4F523AAAD" modified="2015-11-11" version="1">MGLDPLLSRYMQEAIKVFGKPRIRVIGNDRLYKFWSNTLRIGSSGAHMIDRHYTFGYPLYYIMSEMDPAFPPRPTESALMNELRPLFANAREIFFKYPNRPPSWLHEVINKIIFRLWE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXU3</accession>
    <name>A0A0M2UXU3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Mg chelatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00600</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000083">
        <property type="protein sequence ID" value="KKO20672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20672">
        <property type="protein sequence ID" value="KKO20672"/>
        <property type="gene ID" value="BROFUL_00600"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.756"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045006">
        <property type="entry name" value="CHLI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004482">
        <property type="entry name" value="Mg_chelat-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025158">
        <property type="entry name" value="Mg_chelat-rel_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000523">
        <property type="entry name" value="Mg_chelatse_chII-like_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32039">
        <property type="entry name" value="PTHR32039"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32039:SF7">
        <property type="entry name" value="PTHR32039:SF7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01078">
        <property type="entry name" value="Mg_chelatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13335">
        <property type="entry name" value="Mg_chelatase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00368">
        <property type="entry name" value="TIGR00368"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mg_chelatase" evidence="1">
        <location>
            <begin position="194"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="domain" description="Mg_chelatase_C" evidence="2">
        <location>
            <begin position="408"/>
            <end position="503"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="511" mass="55930" checksum="22E474DD1BA2A7DE" modified="2015-11-11" version="1">MLAKVKSVAVFGIDAYLLDIEVYIATGDMPYIAIVGLPDTAVKESRDRVKAAINNSGYRFPYGPMTINLAPADRKKEGPVFELPIAIGILIATKQIKVSDVQEYAIVGELSLDGKLRPVKGCLSMAFKCKEMGIKKFLVPSENASEAAVIDGIDTIPVKTLADTVGILTAALPAVPCKVELSTVFRESSGYDVDYADVKGQEHAKRALTVAVAGNHNVIMVGPPGAGKTMLAQRIPTIMPSLTLEEALETTKIYSVVGLLPPGQSLIVTRPFRAPHHTISTAGLIGGGSFPRPGEISLSHNGVLFLDELPEFDRKTIEVLRQPLETGCVTISRAMSSVTYPAQFFVCLALNPCPCGFFTDHQKVCRCTPHQIQTYMSKVSGPLLDRIDIQIEVPSVRYRELVSEKDAQSSKEIREKIAVARTMQKERFRDQAIMVNAHMSSRHIKKYCVVEKTAEVLLHQAMTELGLSARGYSKILKVARTIADLDESGLIKPEHVSEAIQYRNLDRGLWK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYB7</accession>
    <name>A0A0M2UYB7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">S-adenosylmethionine synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01813</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000189">
        <property type="protein sequence ID" value="KKO19474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19474">
        <property type="protein sequence ID" value="KKO19474"/>
        <property type="gene ID" value="BROFUL_01813"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2254"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004478">
        <property type="term" value="F:methionine adenosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006556">
        <property type="term" value="P:S-adenosylmethionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022631">
        <property type="entry name" value="ADOMET_SYNTHASE_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022629">
        <property type="entry name" value="S-AdoMet_synt_central"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022628">
        <property type="entry name" value="S-AdoMet_synt_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002133">
        <property type="entry name" value="S-AdoMet_synthetase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022636">
        <property type="entry name" value="S-AdoMet_synthetase_sfam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11964">
        <property type="entry name" value="PTHR11964"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02772">
        <property type="entry name" value="S-AdoMet_synt_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00438">
        <property type="entry name" value="S-AdoMet_synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55973">
        <property type="entry name" value="SSF55973"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01034">
        <property type="entry name" value="metK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00376">
        <property type="entry name" value="ADOMET_SYNTHASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S-AdoMet_synt_N" evidence="2">
        <location>
            <begin position="6"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="domain" description="S-AdoMet_synt_M" evidence="3">
        <location>
            <begin position="118"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02772"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="245" mass="27038" checksum="4E5F3C915DBCCA07" modified="2015-11-11" version="1">MKKGRHLFTSESVSMGHPDKVADQISDAVLDAMLEQDPMSRVACETLVTTGVAFVAGEFTTKANVNIPDIVRHTIKEIGYGDASIGFDYNTCAVITSIGKQSPDISQGVSEGEGLHKDQGAGDQGMMFGYACNDTPELMPLPIMLAHRIIIKHAELRQSGELKYLRPDAKSQVTVEYEDHKPIRVHTVVVSTQHAPDVKYETIKEDMIEKVVKQVIPANLLDNKTIYHINQRDVLSWVVLRGIVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYE8</accession>
    <name>A0A0M2UYE8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01786</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000186">
        <property type="protein sequence ID" value="KKO19509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19509">
        <property type="protein sequence ID" value="KKO19509"/>
        <property type="gene ID" value="BROFUL_01786"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2214"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="231"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="260"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="6"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19509.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="288" mass="32480" checksum="4D199E91F2A23429" modified="2015-11-11" version="1">MIEEASIIIPAYNEREGISAVIESLQSLKKRLDNRWEIIVVDDGSTDGTSETIQNAPEVVLIRHPFNRGYGAAIKTGIRHAKYHTVVISDADGTYPLQDIPRLLTPMAKSDMVVGARENNDANIPFIRRPAKWILNKLANYLTGRKIPDLNSGLRAMKKDVVMQFIHLLPDGFSFTTTITLAMLTNDYTVEFVPIEYHRRSGRSKIRPVRDTLNFLQLIIRTVLYFDPLKIFLPISAFFFIASIAVLVLSYLFTPKVMDITTVILFISGVQILAIGMIADLIDKRSRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYH8</accession>
    <name>A0A0M2UYH8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF5615 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00134</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000016">
        <property type="protein sequence ID" value="KKO21133.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21133">
        <property type="protein sequence ID" value="KKO21133"/>
        <property type="gene ID" value="BROFUL_00134"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.167"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041049">
        <property type="entry name" value="DUF5615"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18480">
        <property type="entry name" value="DUF5615"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF5615" evidence="1">
        <location>
            <begin position="6"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18480"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21133.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="97" mass="11042" checksum="D528FDD8A7858976" modified="2015-11-11" version="1">MSEKIKFYMDEHVPSAVGTGLQLRGVDVLKTHEAHMLSASDVEHLTFATNCGRVIFTQDDDFLRLHKKGIRHSDIVWAHQRMSIGDISTDLCLFIRC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYJ2</accession>
    <name>A0A0M2UYJ2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ATP-dependent DNA helicase RecG</fullName>
            <ecNumber evidence="3">3.6.1.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">recG_1</name>
        <name evidence="3" type="ORF">BROFUL_00638</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.-" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20655">
        <property type="protein sequence ID" value="KKO20655"/>
        <property type="gene ID" value="BROFUL_00638"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.950.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025831">
        <property type="entry name" value="RecG_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038475">
        <property type="entry name" value="RecG_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007421">
        <property type="entry name" value="Schlafen_AlbA_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038461">
        <property type="entry name" value="Schlafen_AlbA_2_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04326">
        <property type="entry name" value="AlbA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13749">
        <property type="entry name" value="HATPase_c_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0347">Helicase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AlbA_2" evidence="1">
        <location>
            <begin position="15"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="domain" description="HATPase_c_4" evidence="2">
        <location>
            <begin position="303"/>
            <end position="389"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="396" mass="45612" checksum="8A1B793FE23ECF7B" modified="2015-11-11" version="1">MLHEQEVLKLIAGGENSYVEFKEDTVDNKKLAKEIIALSNHRGGYLLLGVDDAGKVSGIARNDNEERMVNICSDLIKPVINPAYYEMSIEGKRIGVVEIDNGCNKPYYMEDKAAKTNRYYMRYGSTTREVKHRDELQRLFQASQNIHYEIIPASYAKPETLDEYEIKEYLKNNRSGIELTEENKLNLFQSLELITFADNQYRPTIAGLLLFGKDRVTKYLPQAEIMCVKVSGTHITDEKENLKFFERNVFDNFKDAVSFFYLYNRQSFVIEGVKRIDFYDYPEKAFREILANAIIHRDYTIAGTGITVWIYDDRIEIKSPGGLPNTITVEKMKVGIKYHRNPVLAQYFFDANMVERAGQGIPKSNRWLKENGNPALGIKEGEHEVVVTMYKRGKIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYP2</accession>
    <name>A0A0M2UYP2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Glycogen phosphorylase</fullName>
            <ecNumber evidence="4">2.4.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">BROFUL_01701</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[(1-&gt;4)-alpha-D-glucosyl](n) + phosphate = [(1-&gt;4)-alpha-D-glucosyl](n-1) + alpha-D-glucose 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:41732"/>
            <dbReference type="Rhea" id="RHEA-COMP:9584"/>
            <dbReference type="Rhea" id="RHEA-COMP:9586"/>
            <dbReference type="ChEBI" id="CHEBI:15444"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58601"/>
            <dbReference type="EC" id="2.4.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the glycogen phosphorylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.1" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000176">
        <property type="protein sequence ID" value="KKO19594.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19594">
        <property type="protein sequence ID" value="KKO19594"/>
        <property type="gene ID" value="BROFUL_01701"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2106"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008184">
        <property type="term" value="F:glycogen phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102250">
        <property type="term" value="F:linear malto-oligosaccharide phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102499">
        <property type="term" value="F:SHG alpha-glucan phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011834">
        <property type="entry name" value="Agluc_phsphrylas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000811">
        <property type="entry name" value="Glyco_trans_35"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024517">
        <property type="entry name" value="Glycogen_phosphorylase_DUF3417"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035090">
        <property type="entry name" value="Pyridoxal_P_attach_site"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11897">
        <property type="entry name" value="DUF3417"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00343">
        <property type="entry name" value="Phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000460">
        <property type="entry name" value="Pprylas_GlgP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02094">
        <property type="entry name" value="more_P_ylases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00102">
        <property type="entry name" value="PHOSPHORYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="5" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="7 10" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DUF3417" evidence="11">
        <location>
            <begin position="12"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="10">
        <location>
            <position position="605"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012591"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00025174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR000460-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF11897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO19594.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="711" mass="81667" checksum="1BAF468A9425126A" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYU9</accession>
    <name>A0A0M2UYU9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">30S ribosomal protein S2</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpsB</name>
        <name evidence="7" type="ORF">BROFUL_00469</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the universal ribosomal protein uS2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000062">
        <property type="protein sequence ID" value="KKO20800.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20800">
        <property type="protein sequence ID" value="KKO20800"/>
        <property type="gene ID" value="BROFUL_00469"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.584"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01425">
        <property type="entry name" value="RPS2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00291_B">
        <property type="entry name" value="Ribosomal_S2_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001865">
        <property type="entry name" value="Ribosomal_S2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005706">
        <property type="entry name" value="Ribosomal_S2_bac/mit/plastid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018130">
        <property type="entry name" value="Ribosomal_S2_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023591">
        <property type="entry name" value="Ribosomal_S2_flav_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12534">
        <property type="entry name" value="PTHR12534"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00318">
        <property type="entry name" value="Ribosomal_S2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00395">
        <property type="entry name" value="RIBOSOMALS2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52313">
        <property type="entry name" value="SSF52313"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01011">
        <property type="entry name" value="rpsB_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00963">
        <property type="entry name" value="RIBOSOMAL_S2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20800.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="234" mass="26268" checksum="744939EA8AB3FA16" modified="2015-11-11" version="1">MSTVSIQELVDAGFHFGHRTSKWNPKMKPFIFGKRNLIHIINLRETVKGLVTACKFLTNLAQTRREVLFVGTKWQAREITIREAQRCGMPYVSERWLGGTLTNFDTIRKRLERLEELENLEKTGGINQFSKKAISSLNRERKKILTNLEGIRNMNSLPGVLVIVDPKHEHNAVNEAKKLGIPTVCLADTDCDPEVIDICVPGNDDAIRSIDLFLTRTASAILAGKELMTAGAKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYV1</accession>
    <name>A0A0M2UYV1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01105</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20146">
        <property type="protein sequence ID" value="KKO20146"/>
        <property type="gene ID" value="BROFUL_01105"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="51" mass="6591" checksum="D2C3BE6839B28D67" modified="2015-11-11" version="1">MEVVTREAEDFREMIFDDFLERRQFERELKQRMLKHLNFLEVEMWDYSKFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYV4</accession>
    <name>A0A0M2UYV4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Chromate resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01641</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000172">
        <property type="protein sequence ID" value="KKO19644.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19644">
        <property type="protein sequence ID" value="KKO19644"/>
        <property type="gene ID" value="BROFUL_01641"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018634">
        <property type="entry name" value="Chromate_resist"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09828">
        <property type="entry name" value="Chrome_Resist"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19644.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="325" mass="38089" checksum="CBA65F3348008A4B" modified="2015-11-11" version="1">MGNTWILFIHQIAQDAPTLRVKVWRNLKKYGAVLFKNAVYVIPHTKQHEEMLQWLCKQIRDEGSDASLFITKSMNKTQDEEMIQCFREVCNKEYRALITACDDMAKKAEQMEETGSITDSAISELKKGVNEILKNTEETARTDFFHAPQKERLIKKTEFLEKKLADWQKTSKREVSLIHKAYHRKDFFGRKWVTRKDVFIDRMASAWLIRKFIDPKARFIFLSDDKIVKDAIPFDMYGSAFTHQGEDCTFETLIKAFGLKDPALQPIAEIVHDIDLEDDKYGRKETEGIEHIIRGLKQQQKDDKELIEKGSGIFDALYQYFRLFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ62</accession>
    <name>A0A0M2UZ62_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01017</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000120">
        <property type="protein sequence ID" value="KKO20251.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20251">
        <property type="protein sequence ID" value="KKO20251"/>
        <property type="gene ID" value="BROFUL_01017"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043231">
        <property type="term" value="C:intracellular membrane-bounded organelle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.5.90">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018967">
        <property type="entry name" value="FeS-contain_CDGSH-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042216">
        <property type="entry name" value="MitoNEET_CISD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09360">
        <property type="entry name" value="zf-CDGSH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00704">
        <property type="entry name" value="ZnF_CDGSH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ZnF_CDGSH" evidence="3">
        <location>
            <begin position="4"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="domain" description="ZnF_CDGSH" evidence="3">
        <location>
            <begin position="41"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20251.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="74" mass="8437" checksum="4BCFD5A13F7B1C94" modified="2015-11-11" version="1">MGKKMPIVVTLEPGTYYWCTCGETKKQPFCDGSHQGTEFEPQVFKIAERKQVAICNCQRTHNPPFCDGTHFNII</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ76</accession>
    <name>A0A0M2UZ76_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01500</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000155">
        <property type="protein sequence ID" value="KKO19774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19774">
        <property type="protein sequence ID" value="KKO19774"/>
        <property type="gene ID" value="BROFUL_01500"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1855"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004951">
        <property type="entry name" value="DUF268_CAE_spp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03269">
        <property type="entry name" value="DUF268"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="255" mass="29097" checksum="C9D9864A81599716" modified="2015-11-11" version="1">MTTMIQDNLTENLVRFVHHLNTTNSPIIKHPGFSQYISDIKEYCKDAHAESRIALWPCLDDKTHETFFDKYYFYQDTWAARKIFEIRPKQVIDLGSTALLVGIISQFVPTISIDIRPLSVSLPGLICERAIITALPFDACTIEFLSSMSVIEHVGLGRYGDKLDAKGSIKAFMEISRIMKPGGHFLFSVPLSHTPGLSFNAHRIFSKQQIMSLLSNFRLQEELFLFPEPGTERDVTTLKGFRFCVWCAHMIKMDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ84</accession>
    <name>A0A0M2UZ84_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00319</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000039">
        <property type="protein sequence ID" value="KKO20950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20950">
        <property type="protein sequence ID" value="KKO20950"/>
        <property type="gene ID" value="BROFUL_00319"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="24" mass="2881" checksum="818D42672599A809" modified="2015-11-11" version="1" fragment="single">MKKNDARRLDHKTLTELRKRAVNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZB6</accession>
    <name>A0A0M2UZB6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01460</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000150">
        <property type="protein sequence ID" value="KKO19819.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19819">
        <property type="protein sequence ID" value="KKO19819"/>
        <property type="gene ID" value="BROFUL_01460"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004155">
        <property type="entry name" value="PBS_lyase_HEAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03130">
        <property type="entry name" value="HEAT_PBS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00567">
        <property type="entry name" value="EZ_HEAT"/>
        <property type="match status" value="11"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="SSF48371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="37"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="590"/>
            <end position="623"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="692"/>
            <end position="737"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="259"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="717"/>
            <end position="731"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19819.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="737" mass="82945" checksum="FE4D706EA979C3F7" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZC8</accession>
    <name>A0A0M2UZC8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Citrate transporter protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00310</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000035">
        <property type="protein sequence ID" value="KKO20975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20975">
        <property type="protein sequence ID" value="KKO20975"/>
        <property type="gene ID" value="BROFUL_00310"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="31"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="58" mass="6253" checksum="56638688CD06D6CF" modified="2015-11-11" version="1" fragment="single">GGNGSPVGASAKVITLGLANKAGCPISFKKFIVYAVPITVESIIISTLYIWLRYYLFM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZD8</accession>
    <name>A0A0M2UZD8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00933</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000114">
        <property type="protein sequence ID" value="KKO20341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20341">
        <property type="protein sequence ID" value="KKO20341"/>
        <property type="gene ID" value="BROFUL_00933"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="89" mass="9986" checksum="6BE68013600A2689" modified="2015-11-11" version="1">MPGSVDTACRKWGFTRTILDTGIFHAQRMTQRNAPLAPFIKGDFLTIGANGRSPLRRGFRGSCLACCAKTTDFLHIKVKLSYCTHRIQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZI4</accession>
    <name>A0A0M2UZI4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01379</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the peptidase M16 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000142">
        <property type="protein sequence ID" value="KKO19904.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19904">
        <property type="protein sequence ID" value="KKO19904"/>
        <property type="gene ID" value="BROFUL_01379"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011249">
        <property type="entry name" value="Metalloenz_LuxS/M16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011765">
        <property type="entry name" value="Pept_M16_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001431">
        <property type="entry name" value="Pept_M16_Zn_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007863">
        <property type="entry name" value="Peptidase_M16_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00675">
        <property type="entry name" value="Peptidase_M16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05193">
        <property type="entry name" value="Peptidase_M16_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63411">
        <property type="entry name" value="SSF63411"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00143">
        <property type="entry name" value="INSULINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_M16" evidence="3">
        <location>
            <begin position="14"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M16_C" evidence="4">
        <location>
            <begin position="170"/>
            <end position="342"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU004447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00675"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF05193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19904.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="428" mass="48683" checksum="3609232F98BD1200" modified="2015-11-11" version="1">MYTYRKELLPNGLRVIYIEMPHIHSVVISAYIGVGSRYEEEKQLGISHFLEHMLFRGTRQFQNSFELFQAIDTIGGDIDAYTSPEYSAATIQVHHKHTEKGIRILGDVLLGGNFKAADLEIERRIIQEEMKQFVDVKGDYVGIDDMSFSLMWKDSSAGVPLFGDEKTIASLSAKDLNTHYKKFFVPENIVLCVSGNFRRDMVTHYVNEIFGQVRGTTSGQKPSLTTAQTEPRYLFKKSPSQTTSFKLCHKAYPYKHEKVIIMLILADILGGGISSRLSLNVREKLGLVYDITCYPTMFSDVGSLDIYTSTKKENFEKTTKAVMAEVHRLFREGITEQELSRTEERVFSQTQLLMDSPLAMANWFGIEELLLAPKRPDTPENQAQKIHDVKLESVQNAIAEIFVPEKRNFVVVGSYNVMSKKRTTAMLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZP6</accession>
    <name>A0A0M2UZP6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00191</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000021">
        <property type="protein sequence ID" value="KKO21080.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21080">
        <property type="protein sequence ID" value="KKO21080"/>
        <property type="gene ID" value="BROFUL_00191"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.234"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21080.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="204" mass="23496" checksum="6D9240750303EBB7" modified="2015-11-11" version="1">MRIPGEEANLFYKLIWGLQFYVNQQHQILPNIKSANEYAELPMSEKLEVRDALWKNPNLIDVYVEKNPDSLSTQELDIVSKWKRFVAGGFQIFRYLKNYTIFINENSQVYGVLGLYDNLEDLFPGRPLPMMVAAVLLPFKGKIVYDGVLKGYNISFGGSIRSGLNEKYMAAKQNDRIITTLEPELRHRYKPGINRSPAKTGSQW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZQ1</accession>
    <name>A0A0M2UZQ1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00183</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000019">
        <property type="protein sequence ID" value="KKO21085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21085">
        <property type="protein sequence ID" value="KKO21085"/>
        <property type="gene ID" value="BROFUL_00183"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.223"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007065">
        <property type="entry name" value="HPP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04982">
        <property type="entry name" value="HPP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="79"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="155"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="193"/>
            <end position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="227" mass="25153" checksum="E5C22E589039CDDB" modified="2015-11-11" version="1">MLKRRKSAEIKRVIDVEFEVKRSLEEDKEGYITYLVGIFKKSSERGKGIMPLTEGISKISTYIQKLPRAPQPALTSREVWLSLWGTIFGIGITALLAFTWKCPMLLGSFGSTAPLLYCAYKSPLAQPRNVVLGHFIGASIGVTINDFFGVTWWSIALAVALAVVLMFVTYSIHPPAGATAYVAIQTGGLGVGYWFILNPTMLGIFMMVTVAVIFNKLGKREYPLHWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZT3</accession>
    <name>A0A0M2UZT3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01269</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO19999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19999">
        <property type="protein sequence ID" value="KKO19999"/>
        <property type="gene ID" value="BROFUL_01269"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="74"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="95" mass="10423" checksum="4693D744AC06A36A" modified="2015-11-11" version="1">MANIYTCKTCGLVMEEKGHLCNPIPAKKVVACKYCGTTTGDPRHVCSPKLVNLKYICDSCGRLAAKREMLCRPSPLQIPKKPAVKKTGKSKKSKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZY7</accession>
    <name>A0A0M2UZY7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00748</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000095">
        <property type="protein sequence ID" value="KKO20526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20526">
        <property type="protein sequence ID" value="KKO20526"/>
        <property type="gene ID" value="BROFUL_00748"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.945"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="6"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644128" evidence="2">
        <location>
            <begin position="24"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="29"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="63"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="97"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="131"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="165"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="199"/>
            <end position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="265" mass="30475" checksum="28CCC2C6E5DD652C" modified="2015-11-11" version="1">MKRIVFTVLLFLNVICAPLNYGAEEFGDFDVHYQMGNEYNNRGLVDLAITEYKKAIELNRYSPKVYNNLGVAYSKRKMFDAEIAAYKIAIELDPRYTDAYFNLGIAYGAKGMVDEEISLYEKVIELDPKNFEAFYNLGDSYREKEKYDESITAYKKAIEISPQSVNSYFNLGVSYGKKGLLDDEIAQYKKVLELNPRSAEAHFNLGVAYGEKKMYENQISEYKKAIALNPGYAKAHKNLESIYRGKGMKEEADRELSMYHDLVKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V090</accession>
    <name>A0A0M2V090_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01113</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20154">
        <property type="protein sequence ID" value="KKO20154"/>
        <property type="gene ID" value="BROFUL_01113"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1381"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032823">
        <property type="entry name" value="BCA_ABC_TP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12399">
        <property type="entry name" value="BCA_ABC_TP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="3">
        <location>
            <begin position="29"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="domain" description="BCA_ABC_TP_C" evidence="4">
        <location>
            <begin position="136"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF12399"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="165" mass="18627" checksum="07A5427B221F367F" modified="2015-11-11" version="1">MTVLENVLLGMKYNKGESLTAALFRVSEMLREERGNKEKAMELLSTVELELKRDEFAGNLSHGQRRLLEIARTLGTDSALYLFDEPTAGVYPKTIPVLLDIIRRLKSSGKTILFIEHNMKVVMDISDKVIVLNYGKKIAEGTPKEIQENEIVLEAYMGKGRRVVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0A5</accession>
    <name>A0A0M2V0A5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00657</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000087">
        <property type="protein sequence ID" value="KKO20621.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20621">
        <property type="protein sequence ID" value="KKO20621"/>
        <property type="gene ID" value="BROFUL_00657"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00158">
        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="4"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="3">
        <location>
            <begin position="143"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="267"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="272"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20621.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="286" mass="31993" checksum="89DE7DD9E9C7580D" modified="2015-11-11" version="1">MKNNILIVDDEKLMRVSLEDKLRREGYTVTSLSNAIEGLRVMQSENFDAVITDLRLPKMDGIEFLKEIKKSSPDTVVIIMTAYGSIENAVMAMKEGAYDYVTKPFSLEELIIKLQKALRHKDVVAENLLLKQQILSQYGYDNMIGKCDAMKHVFEMINIVSHRDTTVLIQGESGTGKELTAGAIHYNSPRKDSPFIKLSCAALNKEILESELFGHEKGAFTSAIKMRRGRFELANGGTIFLDDVDDIPLEMQVKLLRVLQEREFERVGGEELSPSTSASSALPKGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0L6</accession>
    <name>A0A0M2V0L6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Aminodeoxychorismate synthase</fullName>
            <ecNumber evidence="1">2.6.1.85</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00543</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.85" evidence="1"/>
    <dbReference type="EMBL" id="LAQJ01000076">
        <property type="protein sequence ID" value="KKO20731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20731">
        <property type="protein sequence ID" value="KKO20731"/>
        <property type="gene ID" value="BROFUL_00543"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.682"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046820">
        <property type="term" value="F:4-amino-4-deoxychorismate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009396">
        <property type="term" value="P:folic acid-containing compound biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005802">
        <property type="entry name" value="ADC_synth_comp_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005801">
        <property type="entry name" value="ADC_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019999">
        <property type="entry name" value="Anth_synth_I-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006805">
        <property type="entry name" value="Anth_synth_I_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015890">
        <property type="entry name" value="Chorismate_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11236">
        <property type="entry name" value="PTHR11236"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04715">
        <property type="entry name" value="Anth_synt_I_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00425">
        <property type="entry name" value="Chorismate_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00095">
        <property type="entry name" value="ANTSNTHASEI"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56322">
        <property type="entry name" value="SSF56322"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00553">
        <property type="entry name" value="pabB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Anth_synt_I_N" evidence="4">
        <location>
            <begin position="20"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="domain" description="Chorismate_bind" evidence="3">
        <location>
            <begin position="209"/>
            <end position="462"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00013139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF04715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="483" mass="54805" checksum="28E5562391760785" modified="2015-11-11" version="1">MDSSKNIVGEVFIQEVRNACTPLEAFCRFSSQTHLFFLDSALPVKGISRYSFLGFNPFLVMKAKHCKITLTDHNGVLEIEGNPFEHLRELLRQFSLKNATESVPFECGVVGYFGYDLRSFIERLTTRMVDDLGLPDMYLGFYDTIIAYDTFLQKCYVIGADFGLDDTLQDRMKHIDEILRRKSDGTGEPEYPKSGPEISEPTLKFNFSKELYLNAIRRIKAYITAGDVYQVNLSQRIETQVDIPPYELYKNLRSINPAPFSGYLAFDEAAIISSSPERFLKMNARHVQTRPIKGTRPRGKDIYTDEMMKQALLSSPKDDAELTMIIDLERNDLGRVCDYGSVKVMERKALETYPTVYHLVATIEGDLYERHDFIDLLKAAFPGGSITGAPKIRAMQIIDELEPTQRSVYTGAIGYIGFNGNADLNIAIRTFIMKGNTVYFQVGSGIVADSDEEEEYEETLHKARALINSLKKRRNSMNITSAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0R2</accession>
    <name>A0A0M2V0R2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00946</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000116">
        <property type="protein sequence ID" value="KKO20314.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20314">
        <property type="protein sequence ID" value="KKO20314"/>
        <property type="gene ID" value="BROFUL_00946"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1193"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014094">
        <property type="entry name" value="LpoB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40593">
        <property type="entry name" value="PTHR40593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13036">
        <property type="entry name" value="LpoB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02722">
        <property type="entry name" value="lp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20314.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="197" mass="22370" checksum="CF13DF88E12869B5" modified="2015-11-11" version="1">MYGLKKLIWGMCVVMGAGCATSVKYKDVTKEETTTADFGLTDLQQIANKMVDSLLSFPPIVQMTNERSPVIFVDVIKNKTLEHIDTESITDTVRTKILRSGKFRFVDMTKVDAAKKQFEFQNEGGMVNQTTAAAFGRQIGAEYMLYGNFASIVKRTSNVKDIYYKFTLNLMELETGIIEWADEKELRKISKRSLFGW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0U9</accession>
    <name>A0A0M2V0U9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">HEPN domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00483</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000066">
        <property type="protein sequence ID" value="KKO20781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20781">
        <property type="protein sequence ID" value="KKO20781"/>
        <property type="gene ID" value="BROFUL_00483"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.605"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007842">
        <property type="entry name" value="HEPN_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05168">
        <property type="entry name" value="HEPN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00748">
        <property type="entry name" value="HEPN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50910">
        <property type="entry name" value="HEPN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HEPN" evidence="1">
        <location>
            <begin position="1"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="111" mass="13149" checksum="251575883FF3D3E6" modified="2015-11-11" version="1">MKTAEIMFNNKRYFYAVFMCHLSIEKALKGLHQERLKEIPPKVHNLIYLLNKIGIKPSEPIGKFLVKLNEDSIVTRYPEELDKLQKDFTQSVVKDILLRSKEALEWIKKQF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V111</accession>
    <name>A0A0M2V111_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00444</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000058">
        <property type="protein sequence ID" value="KKO20831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20831">
        <property type="protein sequence ID" value="KKO20831"/>
        <property type="gene ID" value="BROFUL_00444"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glycos_transf_1" evidence="1">
        <location>
            <begin position="140"/>
            <end position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="319" mass="37002" checksum="95AA5884EE64C997" modified="2015-11-11" version="1">MPSKNTLLRLCWEQFFLPRILKRKRVTLLFSPANVCPLLGRLTNVVMIQNIEPFSNRVPEKRRFLQRIRLKSLKLLTILSVRKARTTIFPSLKARSDIEKSGVMMRHAEVIYHSMNRELFHPFRENDDALLQCKKKYQVNSFILFVSNIQRYKNVFELIRAFVLLRDTIDNALQLVLAGTCPDRKYYNEMKSFIIREGYERRILFLGNVPYEDLPHLYAACTLFVYPSTCESFGMTLVEAMACGAPVLASDREPMQEICADAAIYFDPMDPTAIADVIRKTIRNHDLLSALKINSLERAKAFSWENTARDTLKALTNMH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V161</accession>
    <name>A0A0M2V161_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NYN domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00810</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000103">
        <property type="protein sequence ID" value="KKO20454.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20454">
        <property type="protein sequence ID" value="KKO20454"/>
        <property type="gene ID" value="BROFUL_00810"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1026"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021139">
        <property type="entry name" value="NYN_MARF1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01936">
        <property type="entry name" value="NYN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NYN" evidence="1">
        <location>
            <begin position="12"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20454.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="178" mass="19770" checksum="AD04597F66C1C041" modified="2015-11-11" version="1">MVGGRIKGSQQRVGIFVDVQNMFYSAKALHQSKIDYSKLLLEIVGDRNLIRAIAYVVQKPDVDQSSFTDALSRLGYEIKSKELRLRPDGTAKGDWDMGIAIDSIAIAPKLDTVVLVSGDGDFAPLVEMLKAHGCRVEVVSFRRSTAVELIDAATQYTAIEESMLFKEKKFQKNDTPNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V171</accession>
    <name>A0A0M2V171_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycoside hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00376</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000047">
        <property type="protein sequence ID" value="KKO20906.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20906">
        <property type="protein sequence ID" value="KKO20906"/>
        <property type="gene ID" value="BROFUL_00376"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.466"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008928">
        <property type="entry name" value="6-hairpin_glycosidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012341">
        <property type="entry name" value="6hp_glycosidase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011613">
        <property type="entry name" value="GH15-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00723">
        <property type="entry name" value="Glyco_hydro_15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48208">
        <property type="entry name" value="SSF48208"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_hydro_15" evidence="1">
        <location>
            <begin position="279"/>
            <end position="640"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20906.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="674" mass="77690" checksum="B7450589E42BB8F4" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V179</accession>
    <name>A0A0M2V179_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00805</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000102">
        <property type="protein sequence ID" value="KKO20474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20474">
        <property type="protein sequence ID" value="KKO20474"/>
        <property type="gene ID" value="BROFUL_00805"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644358" evidence="1">
        <location>
            <begin position="32"/>
            <end position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="182" mass="20376" checksum="DB7EF39159A3C3B0" modified="2015-11-11" version="1">MNLSIIPGKGLCISAVVSMMLAGGASSGLFAGEHPEHPRGGYAAVEQKPRVTREDVAKFAEEYVGKNSREGIFKYLDITTGKELELMLEQVHKDKLSPTKADEYFVCADFSGKDGNRYDLDFFVQGADKSSFRIDKSAIAVHKINGKENYAWSFNKKRDLWERKAIIIEKDYPESPKKEHPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1D9</accession>
    <name>A0A0M2V1D9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00751</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000095">
        <property type="protein sequence ID" value="KKO20529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20529">
        <property type="protein sequence ID" value="KKO20529"/>
        <property type="gene ID" value="BROFUL_00751"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007160">
        <property type="entry name" value="DUF362"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04015">
        <property type="entry name" value="DUF362"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="1">
        <location>
            <begin position="319"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="1">
        <location>
            <begin position="348"/>
            <end position="377"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="396" mass="43204" checksum="DEC492056913CAEB" modified="2015-11-11" version="1">MPTVSIVKCDDYESEKVYHAIHKSLSLLNGVDKLVKPGMKVLLKLNLLSSSQPPERAVNTHPIVVRALVRIFQKDFGCDVFIGDSSGSVKNASTFNAFRITRITDIAEETGAKIVNFDKDEYVDVHNKDYEILDKFRIARTLRTVDFIVSVPKLKTHGLTQYTGAIKNMLGSIPGNGKKNVHLIAPKPTVFAKALVDIYHMVPPHLIIMDAIVGMEGNGPNAGQPKKVGLILASQDSVALDSAASSIIGFEPMAIPTIRFAHQRGLGIGELDTINVVGETIHNVSVPDFQKPSSGAQDFAGKYLPDFLLTMMFDSTCSTFSSVNHANCTRCYECVRNCPAGAMSKENGKVIVDKKKCIGCFCCDEVCDFHAIEMKRSLLGRTLLGMAKALGVEKVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1F4</accession>
    <name>A0A0M2V1F4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00289</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000034">
        <property type="protein sequence ID" value="KKO20976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20976">
        <property type="protein sequence ID" value="KKO20976"/>
        <property type="gene ID" value="BROFUL_00289"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="108" mass="12043" checksum="9BE21CCE10BE3571" modified="2015-11-11" version="1">MTPLLSQLQWLVGRRPASGTLEPERLGRTAVSPLKSLNVFYVRLATDGKARSLNPAHAKLHSIEGHDLDSVFAQVVNKPGDTKHPLRNLCLEFRFTREDDNRLDGAGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1T3</accession>
    <name>A0A0M2V1T3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">mRNA interferase</fullName>
            <ecNumber evidence="1">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00642</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Toxic component of a type II toxin-antitoxin (TA) system.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the PemK/MazF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="1"/>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20659">
        <property type="protein sequence ID" value="KKO20659"/>
        <property type="gene ID" value="BROFUL_00642"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.811"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003477">
        <property type="entry name" value="PemK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011067">
        <property type="entry name" value="Plasmid_toxin/cell-grow_inhib"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33988">
        <property type="entry name" value="PTHR33988"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02452">
        <property type="entry name" value="PemK_toxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF033490">
        <property type="entry name" value="MazF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR033490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="105" mass="12191" checksum="1F852B735FBE6455" modified="2015-11-11" version="1">MNQYDIYLVNFDPTIGSEIQKTRPCLVISPDEMNQNIQTIIIAPMTTKSHSYPTRVKINFQKRTGWIVLDQIRTVDRSRLVKRLGRITDDAITKIKSIIKEMLVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1T4</accession>
    <name>A0A0M2V1T4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Flagellar hook-associated protein 2</fullName>
            <shortName evidence="5">HAP2</shortName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Flagellar cap protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">fliD</name>
        <name evidence="8" type="ORF">BROFUL_00611</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2 5">Homopentamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Secreted</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Bacterial flagellum</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the FliD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000085">
        <property type="protein sequence ID" value="KKO20664.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20664">
        <property type="protein sequence ID" value="KKO20664"/>
        <property type="gene ID" value="BROFUL_00611"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009421">
        <property type="term" value="C:bacterial-type flagellum filament cap"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009424">
        <property type="term" value="C:bacterial-type flagellum hook"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007155">
        <property type="term" value="P:cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040026">
        <property type="entry name" value="FliD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010809">
        <property type="entry name" value="FliD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003481">
        <property type="entry name" value="FliD_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30288">
        <property type="entry name" value="PTHR30288"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07195">
        <property type="entry name" value="FliD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02465">
        <property type="entry name" value="FliD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="8" id="KW-0966">Cell projection</keyword>
    <keyword evidence="8" id="KW-0969">Cilium</keyword>
    <keyword evidence="3 5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="8" id="KW-0282">Flagellum</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0964">Secreted</keyword>
    <feature type="domain" description="FliD_N" evidence="6">
        <location>
            <begin position="20"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="domain" description="FliD_C" evidence="7">
        <location>
            <begin position="339"/>
            <end position="572"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="5">
        <location>
            <begin position="531"/>
            <end position="558"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011255"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362066"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF07195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20664.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="593" mass="63527" checksum="409AE1FB1F6EBD0E" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V270</accession>
    <name>A0A0M2V270_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Heavy metal efflux pump</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00060</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000007">
        <property type="protein sequence ID" value="KKO21221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21221">
        <property type="protein sequence ID" value="KKO21221"/>
        <property type="gene ID" value="BROFUL_00060"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.75"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008324">
        <property type="term" value="F:cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2090.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027463">
        <property type="entry name" value="AcrB_DN_DC_subdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001036">
        <property type="entry name" value="Acrflvin-R"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004763">
        <property type="entry name" value="CzcA/CusA/SilA/NccA/HelA/CnrA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32063">
        <property type="entry name" value="PTHR32063"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00873">
        <property type="entry name" value="ACR_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00702">
        <property type="entry name" value="ACRIFLAVINRP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82714">
        <property type="entry name" value="SSF82714"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00914">
        <property type="entry name" value="2A0601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="334"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="362"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="440"/>
            <end position="460"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="472"/>
            <end position="495"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="534"/>
            <end position="554"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="869"/>
            <end position="888"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="895"/>
            <end position="914"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="920"/>
            <end position="946"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="967"/>
            <end position="986"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="998"/>
            <end position="1021"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO21221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1031" mass="113832" checksum="E1C08009D8C089FE" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2D2</accession>
    <name>A0A0M2V2D2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">RNA polymerase sigma factor</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00417</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000056">
        <property type="protein sequence ID" value="KKO20859.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20859">
        <property type="protein sequence ID" value="KKO20859"/>
        <property type="gene ID" value="BROFUL_00417"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006950">
        <property type="term" value="P:response to stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000838">
        <property type="entry name" value="RNA_pol_sigma70_ECF_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01063">
        <property type="entry name" value="SIGMA70_ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0731">Sigma factor</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="3">
        <location>
            <begin position="17"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="4">
        <location>
            <begin position="127"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20859.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="196" mass="22736" checksum="6CF807EE78936DF9" modified="2015-11-11" version="1">MRDDNTRRREFEEHAMAHVDSLYNMALRMVFNKEEAEDLVQETYLKAYRFFDTFQKGTNLKAWLFKILRNTFINNYRKTASMPGEIFFDDIESIQISAPNEEATKSGEAVDTLEKKYNDLGSLLDDEVKSALDSLPIEYREAILLSDVEELSYKDISEITNVPIGTVKSRLNRGRGLLQKSLLAYAKDRGFIKREK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V375</accession>
    <name>A0A0M2V375_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pseudouridine synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00155</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the pseudouridine synthase RluA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000017">
        <property type="protein sequence ID" value="KKO21109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21109">
        <property type="protein sequence ID" value="KKO21109"/>
        <property type="gene ID" value="BROFUL_00155"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0120159">
        <property type="term" value="F:rRNA pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000455">
        <property type="term" value="P:enzyme-directed rRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd02869">
        <property type="entry name" value="PseudoU_synth_RluA_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006224">
        <property type="entry name" value="PsdUridine_synth_RluC/D_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006145">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00849">
        <property type="entry name" value="PseudoU_synth_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01479">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00363">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01129">
        <property type="entry name" value="PSI_RLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S4" evidence="2">
        <location>
            <begin position="14"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO21109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="282" mass="31828" checksum="A1B1A49186855D8F" modified="2015-11-11" version="1">MQRFILTREESIHTLLSFIAVRLSLSRKKAKRLLDNRRVFVNKKRTWIASYQLKEGDSVEVHEEGQMSSPSQRSAILFQDNHYLIISKPAHIATNGPKSLECELRVSLQNNHIQAVHRLDKDTSGAVIFALNKGAFEQMKALFKKNLVKKAYRVIVRGAVGKKTFTLDAPVRGQKAITHVTLLKGGKGASLLEVSTATGRTHQIRIHLAAAGHPVAGEMEYDRTPLERRLMRQIPRQMLHAYLLSFEHPYTRETISITAPAPADFDRCLKLLGLEEPIPARN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPA1</accession>
    <name>A0A0M2UPA1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03356</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000307">
        <property type="protein sequence ID" value="KKO17958.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17958">
        <property type="protein sequence ID" value="KKO17958"/>
        <property type="gene ID" value="BROFUL_03356"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013784">
        <property type="entry name" value="Carb-bd-like_fold"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49452">
        <property type="entry name" value="SSF49452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17958.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="128" mass="13494" checksum="36A1DFA3D6CB3C86" modified="2015-11-11" version="1">MKSRYVFFVGGGVVLCLLLSMTVAISKAYAIPGTVSGTVRDDFEKDGYETSDPPLSPNPALRPSMRLLIGSNVIAGPVNRTPEGMYTFAALPGNYTVEASCSGFVTQTQPVTIISGGGTTKNFGLQRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPM8</accession>
    <name>A0A0M2UPM8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03244</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000296">
        <property type="protein sequence ID" value="KKO18073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18073">
        <property type="protein sequence ID" value="KKO18073"/>
        <property type="gene ID" value="BROFUL_03244"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="80" mass="9523" checksum="24319C3F7C4CA8BF" modified="2015-11-11" version="1">MPILWKDLWKDSFTLDETIKELPMANCWKCGQFLGEKDEWKKMTTTKGDICIPCYNKAKEIDTPRIQAEMDDFLRHKEKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPR1</accession>
    <name>A0A0M2UPR1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03430</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000313">
        <property type="protein sequence ID" value="KKO17882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17882">
        <property type="protein sequence ID" value="KKO17882"/>
        <property type="gene ID" value="BROFUL_03430"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="74" mass="8765" checksum="E928246E758BFB96" modified="2015-11-11" version="1">MPKLTFEIPTDIKDIIKRHEEVDWNKVVNKAIWDYAKKIKLLESLTLKSRLTENDIDDLDHEIKAALSKRYQKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ03</accession>
    <name>A0A0M2UQ03_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">POLIIIAc domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03149</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000288">
        <property type="protein sequence ID" value="KKO18168.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18168">
        <property type="protein sequence ID" value="KKO18168"/>
        <property type="gene ID" value="BROFUL_03149"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3882"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004013">
        <property type="entry name" value="PHP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003141">
        <property type="entry name" value="Pol/His_phosphatase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016195">
        <property type="entry name" value="Pol/histidinol_Pase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02811">
        <property type="entry name" value="PHP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00481">
        <property type="entry name" value="POLIIIAc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89550">
        <property type="entry name" value="SSF89550"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="POLIIIAc" evidence="1">
        <location>
            <begin position="2"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18168.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="213" mass="23013" checksum="9127232668D57B67" modified="2015-11-11" version="1">MIDLHTHTLFSDGVLLPAELIRRCEAKGFRGLVITDHVDYSNIDMVIPNVLKACREIAPVSKLKVFGGAELTHLRPEHIKAMVKRARELGAHLVLVHGETITEPVLPGTNRAAIEAGADILVHPGIISESDAQLAREKGVRLEISGRKGHAYANGHVAMIAKKTGAKLVFGSDSHTPDDLLDRSRAESIARGAGLEEKDIQEMFQDAASLVGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ08</accession>
    <name>A0A0M2UQ08_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Macro domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03122</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000287">
        <property type="protein sequence ID" value="KKO18173.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18173">
        <property type="protein sequence ID" value="KKO18173"/>
        <property type="gene ID" value="BROFUL_03122"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3855"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002589">
        <property type="entry name" value="Macro_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043472">
        <property type="entry name" value="Macro_dom-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52949">
        <property type="entry name" value="SSF52949"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51154">
        <property type="entry name" value="MACRO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Macro" evidence="1">
        <location>
            <begin position="1"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18173.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="164" mass="18400" checksum="DDC277DE854E75C6" modified="2015-11-11" version="1">MIYEVAGDILLTRAEVIAHGVAPNDDFTSVLALSLREQWPALYKEFRHHCHTMHPKVGEIWTWSGPEGKRVVNLFTQEAAYGHGAKPGRARVEYVNHTLRALHKAVESEKFTSLALPRLATGVGGLSWENVFPLITKHLGEIAIPIFVYTTFHKGMKADEKTEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ41</accession>
    <name>A0A0M2UQ41_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_03313</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the type-I restriction system S methylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000302">
        <property type="protein sequence ID" value="KKO18002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18002">
        <property type="protein sequence ID" value="KKO18002"/>
        <property type="gene ID" value="BROFUL_03313"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4082"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.220.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000055">
        <property type="entry name" value="Restrct_endonuc_typeI_TRD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044946">
        <property type="entry name" value="Restrct_endonuc_typeI_TRD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01420">
        <property type="entry name" value="Methylase_S"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0680">Restriction system</keyword>
    <feature type="domain" description="Methylase_S" evidence="4">
        <location>
            <begin position="1"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="domain" description="Methylase_S" evidence="4">
        <location>
            <begin position="194"/>
            <end position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010923"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01420"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="392" mass="45334" checksum="1BBBC00DF9CB5AF6" modified="2015-11-11" version="1">MSEWKEYKFSDFVHINPTLKLSIGETYSFVEMKDLSNGHKFCTPSIERKLTSGSKFQEGDTLFARITPCLENGKICQVRGLKNGVGFGSTEFFVFRGKHDVSDNEFVFYLSRWDEVRSFAEMNFDGTSGRQRVPKESLDNLFLKLPPLSEQKSIASILSSLDDKIDLLHRQNKTLEALAETLFRQWFVEENESLEIAKLKDFCNHLKANVNPLKQPDKIFHHYSIPAFDEGQEPEITPGREIRSNKYQIKEGTILISKLNPRFPRVWPILENIGKNHSICSTEFQVVEPKDSKYFGFILCFLKSKAVKDELIQSTSGTSGSHQRVSPEDIFNLTIPVTNDDKLNEFNLITNPYWDKIKNNKRQIRTLIRLRDTLLPKLMNREVRVKELDLLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ45</accession>
    <name>A0A0M2UQ45_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03106</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000286">
        <property type="protein sequence ID" value="KKO18208.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18208">
        <property type="protein sequence ID" value="KKO18208"/>
        <property type="gene ID" value="BROFUL_03106"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="5"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18208.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="124" mass="13978" checksum="35AE18630217E831" modified="2015-11-11" version="1">MPDKNVMVVEDNEKNRKLMRVVLKSKGYNVIEATTGEEALNLLKNQKPNIIMMDIQLPGIDGLTLIKQIKADAMTKEIPIIAVTAYAMKGDEQKILDTGCEAYMSKPINTQELPIIIEKYIKKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQZ1</accession>
    <name>A0A0M2UQZ1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Polymer-forming cytoskeletal</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03251</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000297">
        <property type="protein sequence ID" value="KKO18065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18065">
        <property type="protein sequence ID" value="KKO18065"/>
        <property type="gene ID" value="BROFUL_03251"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007607">
        <property type="entry name" value="BacA/B"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04519">
        <property type="entry name" value="Bactofilin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="183" mass="20709" checksum="61DCC36F8A8A5A45" modified="2015-11-11" version="1">MSSKAGELPETREIVCPYCHRNFPVSIHCISIPCRYCNRHINIQEALFPPEKREKPSPGDRRILCYKCGKEIYTHAKAQAIRCNHCYHQNDMNDYTIKVLMGKIIETHGTLYLKKKGIIEISNIRVGNAIVKGKIHGDLYASGTVEILKPGEIYGKITCRKLIIKKGGTFNGRVQILPANQES</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR24</accession>
    <name>A0A0M2UR24_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02761</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000260">
        <property type="protein sequence ID" value="KKO18538.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18538">
        <property type="protein sequence ID" value="KKO18538"/>
        <property type="gene ID" value="BROFUL_02761"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3416"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026350">
        <property type="entry name" value="GxxExxY"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13366">
        <property type="entry name" value="PDDEXK_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04256">
        <property type="entry name" value="GxxExxY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18538.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="146" mass="16825" checksum="6AD24A88A313EE7C" modified="2015-11-11" version="1">MHPQMTQRDAERRDPQTYTIIGAAMQVHKELGHGFLEAVYQEALEREFSKQGIPYVREQELKIFYCGQELKTFYKADFVCFSSIIVELKAVQNITGVDEAQVINYLKASNLNKALLINFGSLSLQYKRLVFNLRESVQSADKEREA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR51</accession>
    <name>A0A0M2UR51_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02946</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000278">
        <property type="protein sequence ID" value="KKO18347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18347">
        <property type="protein sequence ID" value="KKO18347"/>
        <property type="gene ID" value="BROFUL_02946"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022453">
        <property type="entry name" value="Znf_MqsA-type"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03831">
        <property type="entry name" value="YgiT_finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="85" mass="9739" checksum="5CB1D7BD146F6D69" modified="2015-11-11" version="1">MVKEYKYSDCFYCGGAVAEQLTHREIRWKGKLFIFENVPVGVCTQCGEKVIKPAVAKAIDQLLQEEKKPTKIIQVPVYQYESNIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URA4</accession>
    <name>A0A0M2URA4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Alcohol dehydrogenase (Acceptor)</fullName>
            <ecNumber evidence="6">1.1.99.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">alkJ</name>
        <name evidence="6" type="ORF">BROFUL_03154</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the GMC oxidoreductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.99.-" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000289">
        <property type="protein sequence ID" value="KKO18160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18160">
        <property type="protein sequence ID" value="KKO18160"/>
        <property type="gene ID" value="BROFUL_03154"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3888"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016614">
        <property type="term" value="F:oxidoreductase activity, acting on CH-OH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012132">
        <property type="entry name" value="GMC_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000172">
        <property type="entry name" value="GMC_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007867">
        <property type="entry name" value="GMC_OxRtase_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11552">
        <property type="entry name" value="PTHR11552"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05199">
        <property type="entry name" value="GMC_oxred_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00732">
        <property type="entry name" value="GMC_oxred_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000137">
        <property type="entry name" value="Alcohol_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00623">
        <property type="entry name" value="GMC_OXRED_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0274">FAD</keyword>
    <keyword evidence="4" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GMC_OxRdtase_N" evidence="5">
        <location>
            <begin position="130"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="2">
        <location>
            <position position="515"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="559"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="268"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010790"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000137-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000137-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS00623"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="581" mass="62457" checksum="E7411CF556655D3B" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URI6</accession>
    <name>A0A0M2URI6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Paraquat-inducible protein B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">pqiB</name>
        <name evidence="3" type="ORF">BROFUL_03060</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000284">
        <property type="protein sequence ID" value="KKO18250.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18250">
        <property type="protein sequence ID" value="KKO18250"/>
        <property type="gene ID" value="BROFUL_03060"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3778"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="46"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18250.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="260" mass="28914" checksum="3D22A2192C92F5D0" modified="2015-11-11" version="1">MSKPANKTLIGAFIIGAIALLVAAVLIFGSGKFLKKTHYAVVFFEGSIKGLNEGAPVIFSGVKIGAVTNIRLVYDPVNDSVRIPVIIELEPDKFERTDVVERQPEKNLKLLIERGLRAQLQMQSVVTGQLMIALNFFPDKPANYIGFVKEYPEIPSIPTPLQELAKTIEDLHLKEIVKKLDVTLDSVKKLIQHIDNKIDPLITNITKTSEVSQNTLEIMQATLKQTNNTLSVFSETARSARSLTEYLQQHPDSILKGKPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URP7</accession>
    <name>A0A0M2URP7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02765</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000260">
        <property type="protein sequence ID" value="KKO18542.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18542">
        <property type="protein sequence ID" value="KKO18542"/>
        <property type="gene ID" value="BROFUL_02765"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18542.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="58" mass="6668" checksum="A18B85F042DD0733" modified="2015-11-11" version="1" fragment="single">YESGEIASEKALAMTATMHFDGTLHVVIASEAKQSFTHKKRHLLKEVCEKTYRKKKFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USF6</accession>
    <name>A0A0M2USF6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative phosphoribosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03372</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17921">
        <property type="protein sequence ID" value="KKO17921"/>
        <property type="gene ID" value="BROFUL_03372"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4148"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044005">
        <property type="entry name" value="DZR_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18912">
        <property type="entry name" value="DZR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DZR_2" evidence="2">
        <location>
            <begin position="10"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="domain" description="Pribosyltran" evidence="1">
        <location>
            <begin position="169"/>
            <end position="244"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO17921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="255" mass="28792" checksum="29966B0ED934CAD7" modified="2015-11-11" version="1">MVVHEYLHAFLDIFYSRSCLHCNSNLNSSYDLYLCADCTKRISYVRAAHCIRCGAALGPHGISTAPEGCMQCEGRRLPFTTAISVTYYEGVIKTLIHKFKYSGQKFLFHTLNDIMLSQNAVKEIIPNIDVIVPVPLHWMKKMRRGFNQSELLAQGIQRYFSKPVSTNNLCRIRNTASQTQLSKRQRQVNIWNAFRVNDPESFREKRILLVDDVLTTGVTAAECAKKLKQSGARSVHLLILATAKDPGAGHDSLFP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USG0</accession>
    <name>A0A0M2USG0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">SLATT_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02552</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18772">
        <property type="protein sequence ID" value="KKO18772"/>
        <property type="gene ID" value="BROFUL_02552"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040688">
        <property type="entry name" value="SLATT_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18183">
        <property type="entry name" value="SLATT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="54"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="84"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="domain" description="SLATT_2" evidence="2">
        <location>
            <begin position="9"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18183"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="197" mass="22772" checksum="4DEEC1E6DEDF230D" modified="2015-11-11" version="1">MSNNKDENSFPVLSWNSNEWDVSLKKLYEYVVRETRKAITWYDEKRRSKRVWGYSLRMSAIIVTGVSGVIPVLSQIFLTERLNPLWATIAIAVAAILIALDRFAGLTSGWVRYMITQMELDRLLETFCFDWEKNRLAYSGSVSTPEQAKEALLLCKEFILKIREMVKNETQMWASEFQTALKEIEKASGATNQSRNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USI3</accession>
    <name>A0A0M2USI3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">VWFA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02458</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18797">
        <property type="protein sequence ID" value="KKO18797"/>
        <property type="gene ID" value="BROFUL_02458"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00092">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="256"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="domain" description="VWFA" evidence="2">
        <location>
            <begin position="30"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="274" mass="31003" checksum="A31CB3B20BF5DFF7" modified="2015-11-11" version="1">MSAACCALGLVVLQPKWQTTRDHYEKEGLEIVFVLDVSISMLAEDVNPNRLQRAKMEISHLVRRLEGDRVGLVVFAARAFSLLPYPTNDYERVFLRVLNMINENYVRFVPYGTNIGNAFILAMDSFSKENARKVMILLTDGEEQIITRSQVAEAVKLLLERRDIVIYVVGIGDPRKASPIPKKDAEANATEYEVNEDGETIYTKPNPAFLREITEMVGGTYQHDATGNELRHIFEQVLEKNKNIVGIKKKTVIKDVYQYFAGAALALLALYFIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USI7</accession>
    <name>A0A0M2USI7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03364</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000309">
        <property type="protein sequence ID" value="KKO17951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17951">
        <property type="protein sequence ID" value="KKO17951"/>
        <property type="gene ID" value="BROFUL_03364"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011467">
        <property type="entry name" value="DUF1573"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07610">
        <property type="entry name" value="DUF1573"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="344" mass="38228" checksum="F6B6802F083B84AF" modified="2015-11-11" version="1">MMKIITVYLFILQAVIISYLYTDAFASDSIQGGDSGAETTTDKPKIVFEEQIYNFGKIFIGEIVEYGFKFKNEGQGELIVSNVKSSCGCTAALVSKSHLRKGETGEVKVKFNPGRYVGKVSKTVMVNSNDPKDSSLKLTIAGEVIEEVSVNPKRINFGIIRKGDSCTRNIEVKTIPELKIEVKKVESPNPYVSIKEEKGDDRSTHRFQITIDKYDYVGKFNGIIFVYTSSGKQERVDVPFSGEIVGDITFYPEMVSFGKVTKDRNTDRTVIINFVNKAVKIEKIEVDPKVINYTVTEITPTSKKIQVTVEKNSFIGEIAGSLTIYTNSAIQPVIHIPLNGEIKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USK9</accession>
    <name>A0A0M2USK9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03324</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000305">
        <property type="protein sequence ID" value="KKO17981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17981">
        <property type="protein sequence ID" value="KKO17981"/>
        <property type="gene ID" value="BROFUL_03324"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="99"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO17981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="240" mass="26392" checksum="02DC1348C22A33D5" modified="2015-11-11" version="1" fragment="single">FDTIRDSMPHQDKPDELARLKAAESYGKLPLSFIRNDGQVDGRVRYYERGAGHATYFTKRGVYLSLVGGGTSAPPVSEQVDSSQANAAGRLDQDVSVQSASLNQQGRDEDTIRGAKGKKSAIRNPQSEIVHLMPLGMEKDVEIVAGDEQPGTVNYFIGNDPKKWKTNVPAYESVVYKGVYDGIDMKFYGNNRQMEYDIIVQPGASPSRVQLSYQGIEGLTVAENGDLEIKLKEGKILQFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USL8</accession>
    <name>A0A0M2USL8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03321</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000304">
        <property type="protein sequence ID" value="KKO17991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17991">
        <property type="protein sequence ID" value="KKO17991"/>
        <property type="gene ID" value="BROFUL_03321"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="47" mass="5514" checksum="63C7158889ACBFD6" modified="2015-11-11" version="1" fragment="single">VLGVKRAERMLARVEFHYTPKHASWRNMAEIEIGVMDRQQTAQRSDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USM2</accession>
    <name>A0A0M2USM2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_03319</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the HicA mRNA interferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000303">
        <property type="protein sequence ID" value="KKO17996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17996">
        <property type="protein sequence ID" value="KKO17996"/>
        <property type="gene ID" value="BROFUL_03319"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.920.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012933">
        <property type="entry name" value="HicA_mRNA_interferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038570">
        <property type="entry name" value="HicA_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07927">
        <property type="entry name" value="HicA_toxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-1277">Toxin-antitoxin system</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006620"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO17996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="79" mass="9115" checksum="A3884DCF8EDCA40E" modified="2015-11-11" version="1">MTKFPVDAPKRKVIKALEILGFQMVREREHISMMRENVDGSKTPLTMPNHPKIKASTLRTICAQARITRDEFLEAYEKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USU6</accession>
    <name>A0A0M2USU6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 6">50S ribosomal protein L13</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4 6" type="primary">rplM</name>
        <name evidence="7" type="ORF">BROFUL_02161</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 6">This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4 5">Belongs to the universal ribosomal protein uL13 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000214">
        <property type="protein sequence ID" value="KKO19118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19118">
        <property type="protein sequence ID" value="KKO19118"/>
        <property type="gene ID" value="BROFUL_02161"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2698"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00392">
        <property type="entry name" value="Ribosomal_L13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01366">
        <property type="entry name" value="Ribosomal_L13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005822">
        <property type="entry name" value="Ribosomal_L13"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005823">
        <property type="entry name" value="Ribosomal_L13_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023563">
        <property type="entry name" value="Ribosomal_L13_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036899">
        <property type="entry name" value="Ribosomal_L13_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11545">
        <property type="entry name" value="PTHR11545"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00572">
        <property type="entry name" value="Ribosomal_L13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002181">
        <property type="entry name" value="Ribosomal_L13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52161">
        <property type="entry name" value="SSF52161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01066">
        <property type="entry name" value="rplM_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00783">
        <property type="entry name" value="RIBOSOMAL_L13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01366"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003877"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="144" mass="16591" checksum="95DACE4D184C2C8A" modified="2015-11-11" version="1">MNTFMAKKEKVKRDWFIVDAEDKILGRMLTTVSRVLQGKHKPEYTPHVDVGDFVIITNASKVKLTGKKMQEKIHYYVTGFQGGLRKRMVGKTLETAPEKVFSRSVRRMLPRSRLGKAMLKKLKIYAGAEHPHQAQQPKELVIRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USV0</accession>
    <name>A0A0M2USV0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CYTH domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02637</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18685">
        <property type="protein sequence ID" value="KKO18685"/>
        <property type="gene ID" value="BROFUL_02637"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033469">
        <property type="entry name" value="CYTH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023577">
        <property type="entry name" value="CYTH_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01928">
        <property type="entry name" value="CYTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01118">
        <property type="entry name" value="CYTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55154">
        <property type="entry name" value="SSF55154"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51707">
        <property type="entry name" value="CYTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CYTH" evidence="1">
        <location>
            <begin position="5"/>
            <end position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="217" mass="24537" checksum="307AF6E75C33B155" modified="2015-11-11" version="1">MVEKKTEIEAKFVCPDGLGLDAILAVVYSLGFAGAGEPPCFQTDVYLDTPNYTLLNSDAAIRIRQRGENYVGTYKVSEKQKDATFERTEFEWTLSRDEIKLWNEEKKPAIPPTITDALNFQGQTLRKVLAAETHRSATIIRGNDGFTVELSLDEVTFRGHKGQKHYREIELELLQGRFEQFTAVIQSLQNRLKLQSAVDSKYKQGMILVGKYGVKTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT67</accession>
    <name>A0A0M2UT67_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02471</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18810">
        <property type="protein sequence ID" value="KKO18810"/>
        <property type="gene ID" value="BROFUL_02471"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018641">
        <property type="entry name" value="Trfase_1_rSAM/selenodom_assoc"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36529">
        <property type="entry name" value="PTHR36529"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09837">
        <property type="entry name" value="DUF2064"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="260" mass="29754" checksum="270F3DF8AD53AFAD" modified="2015-11-11" version="1">MDKVLIVFLKYPSPGHVKTRLAKNIGAERACLIYQSLAERVIRNILPKNQMTYEVRIFFTPADKANEIKAWLTPFFSVIPEVHTQFISQEGDDLGARMSHAFEQTLQGRHGKKIPEKHRRNHNTAPPLSLFGKRGRDWAKRLTKNHSCENEGKGYSSPRAIIIGTDCPEIDAELLERAFEVLQKKDVVIGPCRDGGYYLIGMARYTPELFTGIDWSTSRVFAQTIERLQEKNLSCGTLKILADIDRIEDLYHWNIDHLGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTE9</accession>
    <name>A0A0M2UTE9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Sulfatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01942</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="PTM">
        <text evidence="1">The conversion to 3-oxoalanine (also known as C-formylglycine, FGly), of a serine or cysteine residue in prokaryotes and of a cysteine residue in eukaryotes, is critical for catalytic activity.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000199">
        <property type="protein sequence ID" value="KKO19343.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19343">
        <property type="protein sequence ID" value="KKO19343"/>
        <property type="gene ID" value="BROFUL_01942"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2416"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008484">
        <property type="term" value="F:sulfuric ester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000917">
        <property type="entry name" value="Sulfatase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00884">
        <property type="entry name" value="Sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="SSF53649"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sulfatase" evidence="2">
        <location>
            <begin position="64"/>
            <end position="475"/>
        </location>
    </feature>
    <feature type="modified residue" description="3-oxoalanine (Cys)" evidence="1">
        <location>
            <position position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR600917-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19343.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="795" mass="87390" checksum="BCD247C66BFF227D" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTQ3</accession>
    <name>A0A0M2UTQ3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phenylacetate-CoA ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02284</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO18990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18990">
        <property type="protein sequence ID" value="KKO18990"/>
        <property type="gene ID" value="BROFUL_02284"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2847"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="83"/>
            <end position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18990.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="441" mass="49637" checksum="E7AE1CE33E30AE20" modified="2015-11-11" version="1">MHGKGCVRVFDAIDRYSSDEIKTLQGELLTETVRYAYEHSPYYKKRFDELGLHPLHMKGMESIEEMPFTTKEDVQRDTWGFLAVPKQDIAEIVSTTGTTGDPAFIALTHNDLERLAWNEEKSFRYAGVVKGDLFHIAVTCDNLFIAGIAYYRGLINLGASVARIGPQNTIRYLDLIRKLKPTGIVAVPSLILQKLCRAGENGISVKDLGLEKIVLIGDTVRNADFSTNRLGSLIENAFGRICYSTYGITEAHLSFCECQVHRGLHSHPDLVLVEIVDDNGRTLSDGEVGELVLTPFQIEGMPLIRYKTGDITFKMSEPCPCGRNSVRIGPILGRKHHKLKVKGVTLYPQTIGNALLDVKEVINYQIEAYTGDDQTDHILLWIGSYNTRRDFLASLHDAIHARARITPTVKIERPEEVEKRLFEGGSRKAITFKDRRIKLYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTR1</accession>
    <name>A0A0M2UTR1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 7">Aspartate carbamoyltransferase regulatory chain</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">pyrI</name>
        <name evidence="10" type="ORF">BROFUL_02080</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 7">Involved in allosteric regulation of aspartate carbamoyltransferase.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="7">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Contains catalytic and regulatory chains.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the PyrI family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000209">
        <property type="protein sequence ID" value="KKO19202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19202">
        <property type="protein sequence ID" value="KKO19202"/>
        <property type="gene ID" value="BROFUL_02080"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2595"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009347">
        <property type="term" value="C:aspartate carbamoyltransferase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006207">
        <property type="term" value="P:'de novo' pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006221">
        <property type="term" value="P:pyrimidine nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00002">
        <property type="entry name" value="Asp_carb_tr_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020545">
        <property type="entry name" value="Asp_carbamoyltransf_reg_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002801">
        <property type="entry name" value="Asp_carbamoylTrfase_reg"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020542">
        <property type="entry name" value="Asp_carbamoyltrfase_reg_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036792">
        <property type="entry name" value="Asp_carbatrfase_reg_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036793">
        <property type="entry name" value="Asp_carbatrfase_reg_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35805">
        <property type="entry name" value="PTHR35805"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01948">
        <property type="entry name" value="PyrI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02748">
        <property type="entry name" value="PyrI_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54893">
        <property type="entry name" value="SSF54893"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57825">
        <property type="entry name" value="SSF57825"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00240">
        <property type="entry name" value="ATCase_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 7" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 7" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="PyrI" evidence="8">
        <location>
            <begin position="4"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="domain" description="PyrI_C" evidence="9">
        <location>
            <begin position="100"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="106"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="111"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="137"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002565"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010498"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01948"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="149" mass="16662" checksum="43B2CE0B4CE71DDD" modified="2015-11-11" version="1">MKHLDVAAIKDGSVIDHIDSKSTLKVADILNIQNEEQVVLVGVNLTSKFLKKKGIIKIEGKIIDQKEANKIALIAPNATVNIIKDYEVVKKFNTVIPEIIEGIVKCFNPNCVSNHNNIKTKQHVVNKNPIRLQCHYCERIMGAKDIVLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTR6</accession>
    <name>A0A0M2UTR6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">CRISPR-associated endoribonuclease Cas2</fullName>
            <ecNumber evidence="9">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">cas2</name>
        <name evidence="11" type="ORF">BROFUL_03445</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 9">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homodimer, forms a heterotetramer with a Cas1 homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 9 10">Belongs to the CRISPR-associated endoribonuclease Cas2 protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="9"/>
    <dbReference type="EMBL" id="LAQJ01000315">
        <property type="protein sequence ID" value="KKO17869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17869">
        <property type="protein sequence ID" value="KKO17869"/>
        <property type="gene ID" value="BROFUL_03445"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004521">
        <property type="term" value="F:endoribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043571">
        <property type="term" value="P:maintenance of CRISPR repeat elements"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd09725">
        <property type="entry name" value="Cas2_I_II_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01471">
        <property type="entry name" value="Cas2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021127">
        <property type="entry name" value="CRISPR_associated_Cas2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019199">
        <property type="entry name" value="Virulence_VapD/CRISPR_Cas2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34405">
        <property type="entry name" value="PTHR34405"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09827">
        <property type="entry name" value="CRISPR_Cas2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF032582">
        <property type="entry name" value="Cas2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01573">
        <property type="entry name" value="cas2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9 10" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="5 9 10" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6 9 10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7 9 10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4 9 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 9 10" id="KW-0540">Nuclease</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="9">
        <location>
            <position position="8"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009959"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR032582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO17869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="91" mass="10461" checksum="D92BD3E32D6E6B9A" modified="2015-11-11" version="1">MYMVIAYDITSDRRRSKLVKVLKDYGTRVNYSVFECEMGKEALVELKKKITEIVNKKRDSVLFYELCKGCRGKMDSIGMKGSDESHGIITI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTW1</accession>
    <name>A0A0M2UTW1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02052</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19252.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19252">
        <property type="protein sequence ID" value="KKO19252"/>
        <property type="gene ID" value="BROFUL_02052"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19252.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="35" mass="4066" checksum="33E266626307DC96" modified="2015-11-11" version="1">MLSAIFSEYLVFKLRCGHNCSADYISINSKTYKYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTY5</accession>
    <name>A0A0M2UTY5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02860</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000269">
        <property type="protein sequence ID" value="KKO18451.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18451">
        <property type="protein sequence ID" value="KKO18451"/>
        <property type="gene ID" value="BROFUL_02860"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18451.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="79" mass="8520" checksum="2D1A0733D59261DC" modified="2015-11-11" version="1">MQRIEKMADAIGLSSPPPTPRQRGTITDVLVGCLCQNKELVVILVQRSTNMSTYVTVIASDSEAIFSLSPGCSILQIEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU20</accession>
    <name>A0A0M2UU20_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Phosphoenolpyruvate--protein phosphotransferase</fullName>
            <ecNumber evidence="5">2.7.3.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BROFUL_01977</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>L-histidyl-[protein] + phosphoenolpyruvate = N(pros)-phospho-L-histidyl-[protein] + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:23880"/>
            <dbReference type="Rhea" id="RHEA-COMP:9745"/>
            <dbReference type="Rhea" id="RHEA-COMP:9746"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:29979"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:64837"/>
            <dbReference type="EC" id="2.7.3.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the PEP-utilizing enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.3.9" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19317.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19317">
        <property type="protein sequence ID" value="KKO19317"/>
        <property type="gene ID" value="BROFUL_01977"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2461"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008965">
        <property type="term" value="F:phosphoenolpyruvate-protein phosphotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009401">
        <property type="term" value="P:phosphoenolpyruvate-dependent sugar phosphotransferase system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00367">
        <property type="entry name" value="PTS-HPr_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.274.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1340.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000032">
        <property type="entry name" value="HPr-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035895">
        <property type="entry name" value="HPr-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008279">
        <property type="entry name" value="PEP-util_enz_mobile_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018274">
        <property type="entry name" value="PEP_util_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000121">
        <property type="entry name" value="PEP_util_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023151">
        <property type="entry name" value="PEP_util_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036637">
        <property type="entry name" value="Phosphohistidine_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006318">
        <property type="entry name" value="PTS_EI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008731">
        <property type="entry name" value="PTS_EIN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001020">
        <property type="entry name" value="PTS_HPr_His_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036618">
        <property type="entry name" value="PtsI_HPr-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05524">
        <property type="entry name" value="PEP-utilisers_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00391">
        <property type="entry name" value="PEP-utilizers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02896">
        <property type="entry name" value="PEP-utilizers_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00381">
        <property type="entry name" value="PTS-HPr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00107">
        <property type="entry name" value="PHOSPHOCPHPR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47831">
        <property type="entry name" value="SSF47831"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52009">
        <property type="entry name" value="SSF52009"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55594">
        <property type="entry name" value="SSF55594"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01003">
        <property type="entry name" value="PTS_HPr_family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01417">
        <property type="entry name" value="PTS_I_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00742">
        <property type="entry name" value="PEP_ENZYMES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00370">
        <property type="entry name" value="PEP_ENZYMES_PHOS_SITE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51350">
        <property type="entry name" value="PTS_HPR_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00369">
        <property type="entry name" value="PTS_HPR_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0598">Phosphotransferase system</keyword>
    <keyword evidence="13" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0762">Sugar transport</keyword>
    <keyword evidence="13" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="domain" description="HPr" evidence="12">
        <location>
            <begin position="10"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="11">
        <location>
            <begin position="133"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO19317.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="684" mass="76254" checksum="0FF6722E9910D2C5" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU56</accession>
    <name>A0A0M2UU56_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">DNA mismatch repair protein MutL</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">mutL</name>
        <name evidence="8" type="ORF">BROFUL_02796</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the DNA mismatch repair MutL/HexB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000264">
        <property type="protein sequence ID" value="KKO18526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18526">
        <property type="protein sequence ID" value="KKO18526"/>
        <property type="gene ID" value="BROFUL_02796"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3456"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032300">
        <property type="term" value="C:mismatch repair complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140664">
        <property type="term" value="F:ATP-dependent DNA damage sensor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030983">
        <property type="term" value="F:mismatched DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006298">
        <property type="term" value="P:mismatch repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1540.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00149">
        <property type="entry name" value="DNA_mis_repair"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014762">
        <property type="entry name" value="DNA_mismatch_repair_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020667">
        <property type="entry name" value="DNA_mismatch_repair_MutL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002099">
        <property type="entry name" value="DNA_mismatch_repair_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013507">
        <property type="entry name" value="DNA_mismatch_S5_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038973">
        <property type="entry name" value="MutL/Mlh/Pms"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014790">
        <property type="entry name" value="MutL_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042120">
        <property type="entry name" value="MutL_C_dimsub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042121">
        <property type="entry name" value="MutL_C_regsub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037198">
        <property type="entry name" value="MutL_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10073">
        <property type="entry name" value="PTHR10073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01119">
        <property type="entry name" value="DNA_mis_repair"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08676">
        <property type="entry name" value="MutL_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01340">
        <property type="entry name" value="DNA_mis_repair"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00853">
        <property type="entry name" value="MutL_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF118116">
        <property type="entry name" value="SSF118116"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00585">
        <property type="entry name" value="mutl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00058">
        <property type="entry name" value="DNA_MISMATCH_REPAIR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0227">DNA damage</keyword>
    <keyword evidence="3 4" id="KW-0234">DNA repair</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA_mis_repair" evidence="7">
        <location>
            <begin position="209"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="domain" description="MutL_C" evidence="6">
        <location>
            <begin position="453"/>
            <end position="596"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="397"/>
            <end position="416"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM01340"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="640" mass="71509" checksum="988BE2BF70241C12" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU86</accession>
    <name>A0A0M2UU86_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">dTDP-4-deoxyrhamnose 3,5 epimerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02143</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19160">
        <property type="protein sequence ID" value="KKO19160"/>
        <property type="gene ID" value="BROFUL_02143"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008830">
        <property type="term" value="F:dTDP-4-dehydrorhamnose 3,5-epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000888">
        <property type="entry name" value="dTDP_sugar_isom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21047">
        <property type="entry name" value="PTHR21047"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00908">
        <property type="entry name" value="dTDP_sugar_isom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="1">
        <location>
            <position position="129"/>
        </location>
    </feature>
    <feature type="site" description="Participates in a stacking interaction with the thymidine ring of dTDP-4-oxo-6-deoxyglucose" evidence="2">
        <location>
            <position position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR600888-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR600888-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="169" mass="19674" checksum="9A826A977D99798A" modified="2015-11-11" version="1">MEVKQTKLTGVLTIKPPTIFEDFRGTYVELYNEQLYINAGIKVKFIQDDISISSKHVLRGIHGDKETWKLISCLYGKFYLVVVNWDKNSLQYCQWESFTLSEKNCIQVLVPPNFGIGHLVLSEQAIFSYKQSTYYNRANQFTLVWNDQKLNIWWPINNPILSQRDSGIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUB5</accession>
    <name>A0A0M2UUB5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Cyclic nucleotide-gated potassium channel</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BROFUL_02708</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000251">
        <property type="protein sequence ID" value="KKO18591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18591">
        <property type="protein sequence ID" value="KKO18591"/>
        <property type="gene ID" value="BROFUL_02708"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3350"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008076">
        <property type="term" value="C:voltage-gated potassium channel complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005249">
        <property type="term" value="F:voltage-gated potassium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005821">
        <property type="entry name" value="Ion_trans_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028325">
        <property type="entry name" value="VG_K_chnl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11537">
        <property type="entry name" value="PTHR11537"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00520">
        <property type="entry name" value="Ion_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="10 13" id="KW-0407">Ion channel</keyword>
    <keyword evidence="8" id="KW-0406">Ion transport</keyword>
    <keyword evidence="9 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0630">Potassium</keyword>
    <keyword evidence="5" id="KW-0631">Potassium channel</keyword>
    <keyword evidence="3" id="KW-0633">Potassium transport</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="44"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="106"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="domain" description="Ion_trans" evidence="12">
        <location>
            <begin position="8"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO18591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="208" mass="23413" checksum="A251C5CCB3F5DCA9" modified="2015-11-11" version="1">MFLPLDLRFIRALRLFRLFRILKMGRYSESIRTLGNVLKEEKEALAITVFAVLILLVVASSLMYFVENAAQPEAFSSIPEAMWWGVATLTTVGYGDICPITPLGRFLGAIIALLGIGTIAVPAGIVTSGFAGRFKKSMGKEACAHIVEKKWLNRRKGHQPANNYCKFHINFNENAGYECLMCSVSFLNPSYIMNSERRKYHVRNIRNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUE8</accession>
    <name>A0A0M2UUE8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02702</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0175 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000250">
        <property type="protein sequence ID" value="KKO18601.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18601">
        <property type="protein sequence ID" value="KKO18601"/>
        <property type="gene ID" value="BROFUL_02702"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3342"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005368">
        <property type="entry name" value="UPF0175"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03683">
        <property type="entry name" value="UPF0175"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18601.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="83" mass="9398" checksum="3802CC8C072A0A6B" modified="2015-11-11" version="1">MATLTIEYPDEILVLLKETKDDFSHELKTAAAVKLYELGKLSSGKAARLAGMDRISFLRTQGKYQVSISTLEEFKEDMRIDID</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUG2</accession>
    <name>A0A0M2UUG2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02050</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19250.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19250">
        <property type="protein sequence ID" value="KKO19250"/>
        <property type="gene ID" value="BROFUL_02050"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="9"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19250.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="116" mass="13042" checksum="6E4618970FFE9701" modified="2015-11-11" version="1">MEQITKLASILVIDDDLGVRESLKIILRDKYQVSTTSNIDEALASMTIARPEIIFLDIKMPKANGLDFLKQLRSTNTNIPVIMITAHPSIENTIISLRNGAFDFIVKLSTRQKSLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUR4</accession>
    <name>A0A0M2UUR4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02563</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000238">
        <property type="protein sequence ID" value="KKO18731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18731">
        <property type="protein sequence ID" value="KKO18731"/>
        <property type="gene ID" value="BROFUL_02563"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="146" mass="17328" checksum="D63CA45A118E0418" modified="2015-11-11" version="1">MSSEKIIRSTWFLATFFLFFFGICWGSFQWVYKNEILLQSLFKSTASPDAEKVMMLYNAMIKKVPSQQDIGSYYCLGKILTRAGKRKETVKVLNTMIKITPEDMNIRLWLAIELHNQQRYREAEKHFVVLLRKSSKDSLRKYPEYH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUS6</accession>
    <name>A0A0M2UUS6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01738</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000180">
        <property type="protein sequence ID" value="KKO19567.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19567">
        <property type="protein sequence ID" value="KKO19567"/>
        <property type="gene ID" value="BROFUL_01738"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021857">
        <property type="entry name" value="DUF3467"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11950">
        <property type="entry name" value="DUF3467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19567.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="94" mass="10707" checksum="7DA196F06AE7F0F1" modified="2015-11-11" version="1">MKESWFMGCDTSKDFQGGEKLEGRYANTFKVGQNAFEIVIDFGQSYTEGENECFHTRIVSSPFYANILLKTLQESIERYEQAFGPISKGDEEGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUU5</accession>
    <name>A0A0M2UUU5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Phosphate ABC transporter permease component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_03048</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000283">
        <property type="protein sequence ID" value="KKO18259.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18259">
        <property type="protein sequence ID" value="KKO18259"/>
        <property type="gene ID" value="BROFUL_03048"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3762"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="280"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="329"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="184"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18259.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="381" mass="43509" checksum="F85766D8724B193F" modified="2015-11-11" version="1">MKKFLRSGNHYIWLTAGTLTVSLLMISGLIVLIMINGFDIFWPRQIVRFTLRDGTAVMGEVAERELVPHQKGAYRTKLKVGNRDVYGMDFRWIDNADIVSQTYPVHALTVERREWGNLYGFLYGLRRNEGVQPLKAEGLASLLAENHALYKKIRYVEKKEIGNINYRMEKFRLALEGLKSQHPSEKIQNKIDAVMARMEHLENSYREKEATLVALYEKAREKELVVLLADGREEIVPVFQIIRFYAPNEMGIFSKTGFYFAKFWEFVWDDPREANTEGGVFPAIFGTVMMVLIMSIAVVPLGVLTAVYLKEYAGDSFVSRLVRISVSNLAGVPSIVFGVFGLGFFIYFWAGGLTNSFFLMRCQPLRMERGVSCGQRSPCRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUX2</accession>
    <name>A0A0M2UUX2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 9">Flagellar biosynthetic protein FliQ</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9 10" type="primary">fliQ</name>
        <name evidence="10" type="ORF">BROFUL_03016</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Role in flagellar biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="9">Bacterial flagellum basal body</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the FliQ/MopD/SpaQ family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18289">
        <property type="protein sequence ID" value="KKO18289"/>
        <property type="gene ID" value="BROFUL_03016"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009425">
        <property type="term" value="C:bacterial-type flagellum basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044780">
        <property type="term" value="P:bacterial-type flagellum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002191">
        <property type="entry name" value="Bac_export_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006305">
        <property type="entry name" value="FliQ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34040">
        <property type="entry name" value="PTHR34040"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01313">
        <property type="entry name" value="Bac_export_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004669">
        <property type="entry name" value="FliQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00952">
        <property type="entry name" value="TYPE3IMQPROT"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01402">
        <property type="entry name" value="fliQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="4 9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10" id="KW-0966">Cell projection</keyword>
    <keyword evidence="10" id="KW-0969">Cilium</keyword>
    <keyword evidence="10" id="KW-0282">Flagellum</keyword>
    <keyword evidence="7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="12"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="51"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021718"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU364090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO18289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="89" mass="9995" checksum="B2059EE4EDF7FE55" modified="2015-11-11" version="1">MTPEIVINIGKDLLQITVILMAPLLVVAMVVGLVIGIFQTVTSVHEQTITFLPKIFAVMGVFLLCLPWMLRMITSYTVNLLENLTRYCQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUX7</accession>
    <name>A0A0M2UUX7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative hydroxyacylglutathione hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01710</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000176">
        <property type="protein sequence ID" value="KKO19602.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19602">
        <property type="protein sequence ID" value="KKO19602"/>
        <property type="gene ID" value="BROFUL_01710"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="14"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19602.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="226" mass="24683" checksum="5A96933224DBB950" modified="2015-11-11" version="1">MSMLIHKINVGPLQVCCYIVADQGVAEAMVIDPGADAEVIIGFLKKHRLFLKYIVITHGHGDHIGANAELKKAFPDVHICVHEADQDMLPYPAKNLSILAAFYGGTTVRSPVPDRLLKDGDTVAVGNYAFKIIHTPGHSPGGICLYYSNPEDKNPPVLFSGDTLFKEGVGRTDFPGCSEKKLIHAIKERLFVLDERTIVYPGHGPSTTIAEEKKNNPFVTEVTLHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV27</accession>
    <name>A0A0M2UV27_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter permease component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_01635</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the MlaE permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000170">
        <property type="protein sequence ID" value="KKO19657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19657">
        <property type="protein sequence ID" value="KKO19657"/>
        <property type="gene ID" value="BROFUL_01635"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2016"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003453">
        <property type="entry name" value="ABC_MlaE_Proteobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030802">
        <property type="entry name" value="Permease_MalE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30188">
        <property type="entry name" value="PTHR30188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02405">
        <property type="entry name" value="MlaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00056">
        <property type="entry name" value="TIGR00056"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="36"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="77"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="120"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="180"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="211"/>
            <end position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU362044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="236" mass="25514" checksum="8D1E0205F79102B4" modified="2015-11-11" version="1">MGCFIAAALFWVVFPPYLFQRIIKQINFIGVKTTPVIVLTGSFTGMVLALQTYYALAKFGAEASLGPVVALSLIRELGPVISALMVTGCAGSALTAEIGIMRITEQIDALDAMALNPYKYLIVPNVIGGIISLPLLNAIFVVLGVFGGYAISVGLMDLSSGTYFQGIRDFIKTRDILEGLYKSLSFGFLITWISCYKGYFTGYGAEGVSKATIRSVVLSSVMILVWDYFMTSIMIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV51</accession>
    <name>A0A0M2UV51_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Fructose-1,6-biphosphate aldolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01619</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19687.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19687">
        <property type="protein sequence ID" value="KKO19687"/>
        <property type="gene ID" value="BROFUL_01619"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1998"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004332">
        <property type="term" value="F:fructose-bisphosphate aldolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00958">
        <property type="entry name" value="DhnA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002915">
        <property type="entry name" value="DeoC/FbaB/LacD_aldolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041720">
        <property type="entry name" value="FbaB-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01791">
        <property type="entry name" value="DeoC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF038992">
        <property type="entry name" value="Aldolase_Ia"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01133">
        <property type="entry name" value="DeoC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19687.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="265" mass="29302" checksum="FAE1336EA34BB89D" modified="2015-11-11" version="1">MDWGMKNRLSQLIKPNGRCMYMPIDHGYFQGPTSKLERPGETIKPIIDYADALFCTRGVLRSCINPENSKPIILRVSGGTSMVGKDLANEVLTTSIEEAIRLNASGVGLSVFIGSDYEKETLLNLSKLVDEAERYGIPVMAVTAVGREMEKRDARYLALCCRIAAELGARVVKTYWCENFDKVTNGCPVPVVMAGGPKTNSDVEVFEFVHDGMNKGAIGVNLGRNIWQNEHPVAMIRALRAIIHENATVKQASDLFHSVKNEKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV95</accession>
    <name>A0A0M2UV95_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02880</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000271">
        <property type="protein sequence ID" value="KKO18424.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18424">
        <property type="protein sequence ID" value="KKO18424"/>
        <property type="gene ID" value="BROFUL_02880"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18424.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="32" mass="3644" checksum="1A2D5BD37DAC5A4D" modified="2015-11-11" version="1">MGNSSATNVVILDILITRYNSCVQELYVHDKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVD2</accession>
    <name>A0A0M2UVD2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">ATP synthase subunit beta</fullName>
            <ecNumber evidence="10">7.1.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">ATP synthase F1 sector subunit beta</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">F-ATPase subunit beta</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">atpD</name>
        <name evidence="12" type="ORF">BROFUL_02842</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>ATP + 4 H(+)(in) + H2O = ADP + 5 H(+)(out) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:57720"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="7.1.2.2"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell membrane</location>
            <topology evidence="10">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 10">Belongs to the ATPase alpha/beta chains family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.1.2.2" evidence="10"/>
    <dbReference type="EMBL" id="LAQJ01000268">
        <property type="protein sequence ID" value="KKO18459.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18459">
        <property type="protein sequence ID" value="KKO18459"/>
        <property type="gene ID" value="BROFUL_02842"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3516"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045261">
        <property type="term" value="C:proton-transporting ATP synthase complex, catalytic core F(1)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046961">
        <property type="term" value="F:proton-transporting ATPase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1140.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01347">
        <property type="entry name" value="ATP_synth_beta_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005722">
        <property type="entry name" value="ATP_synth_F1_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020003">
        <property type="entry name" value="ATPase_a/bsu_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004100">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036121">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000194">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_nucl-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024034">
        <property type="entry name" value="ATPase_F1/V1_b/a_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00006">
        <property type="entry name" value="ATP-synt_ab"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02874">
        <property type="entry name" value="ATP-synt_ab_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50615">
        <property type="entry name" value="SSF50615"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01039">
        <property type="entry name" value="atpD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00152">
        <property type="entry name" value="ATPASE_ALPHA_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 10" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="4 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 10" id="KW-0139">CF(1)</keyword>
    <keyword evidence="10" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="6 10" id="KW-0406">Ion transport</keyword>
    <keyword evidence="7 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 10" id="KW-1278">Translocase</keyword>
    <keyword evidence="2 10" id="KW-0813">Transport</keyword>
    <feature type="domain" description="AAA" evidence="11">
        <location>
            <begin position="153"/>
            <end position="417"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="161"/>
            <end position="168"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO18459.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="474" mass="51788" checksum="7675AFCF1C57DD7E" modified="2015-11-11" version="1">MAKKVKESKENKGTVVQVIGPVVDVRYSPGALPAIKSAVHIRDTKTNISVVAEVAQHLGNDTARCIAMSTTDGLMRGMDAIDTGAPISVPVGKEVLGRVFNLLGEPIDKLGEVKSASRLPIHRPSPSFEERETVTTVLETGLKVIDLLAPFARGGKIGMFGGAGVGKTVLIMELIRSIATEHGGYSAFAGVGERTREGNDLWLEMKESGVIDKTVLVFGQMNEPPGARLRIALTGLTMAEYFRDTEGQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGDLQERITTTKKGSITSLQAVYVPADDFTDPAPVTTFPHLDATISLSRQIAELGIYPAVDPLRSTSRILDPRIVGQEHYEVAREVQRILQRYKELQDFIAILGMEELSEDDKILVGRARRLQRFLSQPFFVAEQFTGTKGKYVPLKETIRAFKEVVEGKHDSLPEQAFYMVGGIEEVIEKAKQMGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVE6</accession>
    <name>A0A0M2UVE6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01232</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000135">
        <property type="protein sequence ID" value="KKO20033.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20033">
        <property type="protein sequence ID" value="KKO20033"/>
        <property type="gene ID" value="BROFUL_01232"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20033.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="71" mass="7887" checksum="F90E5F3432C02696" modified="2015-11-11" version="1">MKGKILRVMESWPLQLALQTANGVEHVMLAEGATIRRSGILVDPGVLRPDQSVRVLRRTPQGEIAELEILE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVK0</accession>
    <name>A0A0M2UVK0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02799</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000264">
        <property type="protein sequence ID" value="KKO18529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18529">
        <property type="protein sequence ID" value="KKO18529"/>
        <property type="gene ID" value="BROFUL_02799"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="67"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="118" mass="13390" checksum="47CB7EE35BB2A0A8" modified="2015-11-11" version="1">MAKEGKNELAQQEIRDIFGELYKALDDAYWSATTIIDKDRIRGAQEGIFDILTELNRAHIQSNTEKLKELASKVGDVNKRLDALKKDIDKVVQRIEVATRVAKAIDKVLTQAAKYFKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVK4</accession>
    <name>A0A0M2UVK4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Peptidyl-prolyl cis-trans isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02768</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000262">
        <property type="protein sequence ID" value="KKO18534.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18534">
        <property type="protein sequence ID" value="KKO18534"/>
        <property type="gene ID" value="BROFUL_02768"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046357">
        <property type="entry name" value="PPIase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000297">
        <property type="entry name" value="PPIase_PpiC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027304">
        <property type="entry name" value="Trigger_fact/SurA_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109998">
        <property type="entry name" value="SSF109998"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50198">
        <property type="entry name" value="PPIC_PPIASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0697">Rotamase</keyword>
    <feature type="domain" description="PpiC" evidence="2">
        <location>
            <begin position="190"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18534.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="335" mass="39317" checksum="8897D1FECA5D2A05" modified="2015-11-11" version="1">MILKVFNRFYVWFLPVFFTAYAVSYGSTSDLREESINSIKAIVGDEIITQGDVVKRAAVALREAQERYQEKEFFEKADEILKETLDELINRKVLIKEAQKLFGTDEMQMKEVEKDLDSFMKGAVKNVGSLSKYYEIAEAQGINPLEKKNELKEDIMIDKIMKENVYNKVKVQPKLLRRYYVENVDEFRQKKEVSLRQIMIKFSAHDNDREKTLSLAQQIRKRLEKGEDFATLAKQYSEGPNAENGGLLSFEEVNEMRKDLRDAVYQLKDNERSGIIASPVGYHIFKMELIKPEKVQEFEEVQEDIYKKIYREEISRLKNQYLNSLKSGMFVKVFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVR7</accession>
    <name>A0A0M2UVR7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Ammonium transporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_01329</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the ammonia transporter channel (TC 1.A.11.2) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000139">
        <property type="protein sequence ID" value="KKO19937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19937">
        <property type="protein sequence ID" value="KKO19937"/>
        <property type="gene ID" value="BROFUL_01329"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1644"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008519">
        <property type="term" value="F:ammonium transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029020">
        <property type="entry name" value="Ammonium/urea_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001905">
        <property type="entry name" value="Ammonium_transpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024041">
        <property type="entry name" value="NH4_transpt_AmtB-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00909">
        <property type="entry name" value="Ammonium_transp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00836">
        <property type="entry name" value="amt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0924">Ammonia transport</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="48"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="92"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="121"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="164"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="206"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="235"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="269"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="293"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="322"/>
            <end position="341"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="361"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="8">
        <location>
            <begin position="457"/>
            <end position="676"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU362002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="680" mass="74078" checksum="DBF0F0561496221C" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVT7</accession>
    <name>A0A0M2UVT7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01617</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19685">
        <property type="protein sequence ID" value="KKO19685"/>
        <property type="gene ID" value="BROFUL_01617"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="77" mass="8602" checksum="557902607826EFE3" modified="2015-11-11" version="1">MMRVSQKGCQAEDLAGYYFRTGKSQNEQIGLFVSVGMLTEGWDTNKVTQFLVFFPCVICEICGSKRVSPFARGQVLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW95</accession>
    <name>A0A0M2UW95_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Two-component sensor kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_01452</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000147">
        <property type="protein sequence ID" value="KKO19850.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19850">
        <property type="protein sequence ID" value="KKO19850"/>
        <property type="gene ID" value="BROFUL_01452"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1902531">
        <property type="term" value="P:regulation of intracellular signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013767">
        <property type="entry name" value="PAS_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01590">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00989">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1 4" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PAS" evidence="7">
        <location>
            <begin position="177"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="7">
        <location>
            <begin position="328"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="5">
        <location>
            <begin position="467"/>
            <end position="678"/>
        </location>
    </feature>
    <feature type="domain" description="Response regulatory" evidence="6">
        <location>
            <begin position="698"/>
            <end position="815"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="4">
        <location>
            <position position="747"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19850.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="823" mass="93611" checksum="4FE37AB9207C137B" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWB2</accession>
    <name>A0A0M2UWB2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Radical SAM core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02056</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19256.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19256">
        <property type="protein sequence ID" value="KKO19256"/>
        <property type="gene ID" value="BROFUL_02056"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Radical SAM core" evidence="1">
        <location>
            <begin position="253"/>
            <end position="503"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19256.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="608" mass="68450" checksum="05651F273D24CD89" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWP2</accession>
    <name>A0A0M2UWP2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00798</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000101">
        <property type="protein sequence ID" value="KKO20483.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20483">
        <property type="protein sequence ID" value="KKO20483"/>
        <property type="gene ID" value="BROFUL_00798"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1012"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011856">
        <property type="entry name" value="tRNA_endonuc-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009362">
        <property type="entry name" value="YhcG_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041527">
        <property type="entry name" value="YhcG_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17761">
        <property type="entry name" value="DUF1016_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06250">
        <property type="entry name" value="YhcG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1016_N" evidence="2">
        <location>
            <begin position="17"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="domain" description="YhcG_C" evidence="1">
        <location>
            <begin position="177"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06250"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20483.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="363" mass="42386" checksum="A12B0317E5058957" modified="2015-11-11" version="1">MSEIVPPARQYAEFLANIKRTIQQARTRAYYGANKELIGLYWNIGREIAERQEREGWGKSVVERLSRDLREEFPGLSGYSSQNLWYMRQFYTEYRDYSNLQQLVGEIPWGQNLIILSKVKNIKEREFYLRLTIKSGWSRNVLLNQIKAKAYERQVMSNKQHNFTETLPEHIAQQANEAMKDVYMLDFLGVGKPVVEREMERRMVNKIRDVILELGYGFSFIGNQYRIKLNDKEYFIDLLFFHRKLRSLVAIELKAGSFQPEYAGKMNFYLNLLDDLVKEADENPSIGIILCADRDRVEVEYALRGIDKPVGVAEYVLTKKLPKNLIGKLPDSNVIEAEILKELGAERPLKSKPKMRKAKGKRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX18</accession>
    <name>A0A0M2UX18_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">H+-driven flagellar motor component MotA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">motA</name>
        <name evidence="9" type="ORF">BROFUL_00878</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Membrane</location>
            <topology evidence="1 6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the exbB/tolQ family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000106">
        <property type="protein sequence ID" value="KKO20407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20407">
        <property type="protein sequence ID" value="KKO20407"/>
        <property type="gene ID" value="BROFUL_00878"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002898">
        <property type="entry name" value="MotA_ExbB_proton_chnl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01618">
        <property type="entry name" value="MotA_ExbB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9" id="KW-0966">Cell projection</keyword>
    <keyword evidence="9" id="KW-0969">Cilium</keyword>
    <keyword evidence="9" id="KW-0282">Flagellum</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0653">Protein transport</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="147"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="183"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="domain" description="MotA_ExbB" evidence="8">
        <location>
            <begin position="103"/>
            <end position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004057"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="266" mass="28560" checksum="0A1409EA10EED99E" modified="2015-11-11" version="1">MDPGVLIGMIIGGALILVSIIFEGGASAIPGYINMPAMMITIGGTLAATLIRYPIPMVIGAIAVVKKTIFVKIGVAEETIKQLVEYCKISRREGLLGLEKEIEKIKDEFLIKAIRLLVDGSDSDTLRSILGTEIDNVRQRHTAGKGIVEFAGTIFPAFGMIGTVLGLIAMMRKLDDPSHIGEAMAVAFIATFYGVTFSNLVLLPLGGRLDTLSKKELFLKEIVVEGVISIQKGDSPMITEDKLKSFLEPKAAGKLSAGSKEKEKPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX22</accession>
    <name>A0A0M2UX22_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00837</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000105">
        <property type="protein sequence ID" value="KKO20412.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20412">
        <property type="protein sequence ID" value="KKO20412"/>
        <property type="gene ID" value="BROFUL_00837"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20412.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="81" mass="9023" checksum="56FAC71613548C85" modified="2015-11-11" version="1">MRSAGGLSPAQADHKGSALPFSKGFSYNSFTTHEETRKSAVPVDSLHGIEVRPIRRGERIRQYHYLGLHSLIGESIRYLAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX78</accession>
    <name>A0A0M2UX78_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">CRISPR-associated endoribonuclease Cas2</fullName>
            <ecNumber evidence="9">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">cas2</name>
        <name evidence="11" type="ORF">BROFUL_02203</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 9">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homodimer, forms a heterotetramer with a Cas1 homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 9 10">Belongs to the CRISPR-associated endoribonuclease Cas2 protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="9"/>
    <dbReference type="EMBL" id="LAQJ01000220">
        <property type="protein sequence ID" value="KKO19089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19089">
        <property type="protein sequence ID" value="KKO19089"/>
        <property type="gene ID" value="BROFUL_02203"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004521">
        <property type="term" value="F:endoribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043571">
        <property type="term" value="P:maintenance of CRISPR repeat elements"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd09725">
        <property type="entry name" value="Cas2_I_II_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01471">
        <property type="entry name" value="Cas2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021127">
        <property type="entry name" value="CRISPR_associated_Cas2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019199">
        <property type="entry name" value="Virulence_VapD/CRISPR_Cas2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34405">
        <property type="entry name" value="PTHR34405"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09827">
        <property type="entry name" value="CRISPR_Cas2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF032582">
        <property type="entry name" value="Cas2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01573">
        <property type="entry name" value="cas2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9 10" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="5 9 10" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6 9 10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7 9 10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4 9 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 9 10" id="KW-0540">Nuclease</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="9">
        <location>
            <position position="11"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009959"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR032582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO19089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="94" mass="10595" checksum="0E1A61935CE642D4" modified="2015-11-11" version="1">MNKLFTVVAYDISDDKRRTKLHQALKKYGKAVQFSAFECLVTAKEFAGMIGTIHGLLKKEEDKLRIYTLCDGCYKGIKNLGTGEIAKERHTVVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX84</accession>
    <name>A0A0M2UX84_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02190</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000218">
        <property type="protein sequence ID" value="KKO19094.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19094">
        <property type="protein sequence ID" value="KKO19094"/>
        <property type="gene ID" value="BROFUL_02190"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19094.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="56" mass="6093" checksum="BC76B976B8573E7B" modified="2015-11-11" version="1">MFVGDESVHDVNVPFSSLFDVSYGVGADNGMNSLPYDLCTGMQFEFNSKGLDLPPM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXA7</accession>
    <name>A0A0M2UXA7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Phosphoribosylformylglycinamidine synthase subunit PurQ</fullName>
            <shortName evidence="1">FGAM synthase</shortName>
            <ecNumber evidence="1">6.3.5.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Formylglycinamide ribonucleotide amidotransferase subunit I</fullName>
            <shortName evidence="1">FGAR amidotransferase I</shortName>
            <shortName evidence="1">FGAR-AT I</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Glutaminase PurQ</fullName>
            <ecNumber evidence="1">3.5.1.2</ecNumber>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Phosphoribosylformylglycinamidine synthase subunit I</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">purQ</name>
        <name evidence="2" type="ORF">BROFUL_00756</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O + L-glutamine + N(2)-formyl-N(1)-(5-phospho-beta-D-ribosyl)glycinamide = 2-formamido-N(1)-(5-O-phospho-beta-D-ribosyl)acetamidine + ADP + H(+) + L-glutamate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:17129"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:147286"/>
            <dbReference type="ChEBI" id="CHEBI:147287"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.5.3"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H2O + L-glutamine = L-glutamate + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:15889"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="EC" id="3.5.1.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole from N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the FGAM synthase complex composed of 1 PurL, 1 PurQ and 2 PurS subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.3" evidence="1"/>
    <dbReference type="EC" id="3.5.1.2" evidence="1"/>
    <dbReference type="EMBL" id="LAQJ01000096">
        <property type="protein sequence ID" value="KKO20512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20512">
        <property type="protein sequence ID" value="KKO20512"/>
        <property type="gene ID" value="BROFUL_00756"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.956"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00128"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004359">
        <property type="term" value="F:glutaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004642">
        <property type="term" value="F:phosphoribosylformylglycinamidine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00421">
        <property type="entry name" value="PurQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010075">
        <property type="entry name" value="PRibForGlyAmidine_synth_PurQ"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001586">
        <property type="entry name" value="FGAM_synth_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01737">
        <property type="entry name" value="FGAM_synth_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Nucleophile" evidence="1">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="222"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00421"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="261" mass="29277" checksum="5364A52850A89EB4" modified="2015-11-11" version="1">MSKPKVLILRTAGTNCDYETRYAFEKAGAEVAVVHINTLLANKNALHDYQILTLPGGFTYGDDISAGKILANQIRYHLAEEMNAFIRAKKLILGICNGFQTLTKAGFLPALISHDQEVTLTFNDSNKFEGRWVYLKVCSDKSVFLKNSDASIIYLPIAHGEGKFIARDETILKRLTMNRQVIFQYVNEHGEEAGYPWNPAGSVQGIAGISDQTGQILGMMPHPERHVEPTQHPRWTRSGLKEWGDGFLIFKNAVQYVKTNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXE5</accession>
    <name>A0A0M2UXE5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Nucleotidyltransferase substrate binding protein like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01091</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20240">
        <property type="protein sequence ID" value="KKO20240"/>
        <property type="gene ID" value="BROFUL_01091"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1358"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010235">
        <property type="entry name" value="HepT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08780">
        <property type="entry name" value="NTase_sub_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01987">
        <property type="entry name" value="HI0074"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="130" mass="15582" checksum="F38F9F0A65CFA4E3" modified="2015-11-11" version="1">MERLALRYKDALRTSYTLGEILQQPFSVIVRDATIQRFEYTFEALWKFLKEYLKEREGIIANSPKACFREIFSLGVICEEETVQFLEMTDRRNDTSHTYKEEVAQIIYDKTQKYFLLMEGLLKKFRDKIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXP2</accession>
    <name>A0A0M2UXP2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Site-specific DNA-methyltransferase (adenine-specific)</fullName>
            <ecNumber evidence="2">2.1.1.72</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00648</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 2'-deoxyadenosine in DNA + S-adenosyl-L-methionine = an N(6)-methyl-2'-deoxyadenosine in DNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:15197"/>
            <dbReference type="Rhea" id="RHEA-COMP:12418"/>
            <dbReference type="Rhea" id="RHEA-COMP:12419"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:90615"/>
            <dbReference type="ChEBI" id="CHEBI:90616"/>
            <dbReference type="EC" id="2.1.1.72"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.72" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000087">
        <property type="protein sequence ID" value="KKO20612.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20612">
        <property type="protein sequence ID" value="KKO20612"/>
        <property type="gene ID" value="BROFUL_00648"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.819"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008170">
        <property type="term" value="F:N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009007">
        <property type="term" value="F:site-specific DNA-methyltransferase (adenine-specific) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022749">
        <property type="entry name" value="D12N6_MeTrfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003356">
        <property type="entry name" value="DNA_methylase_A-5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038333">
        <property type="entry name" value="T1MK-like_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12161">
        <property type="entry name" value="HsdM_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02384">
        <property type="entry name" value="N6_Mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HsdM_N" evidence="4">
        <location>
            <begin position="8"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="domain" description="N6_Mtase" evidence="3">
        <location>
            <begin position="123"/>
            <end position="415"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF12161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20612.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="522" mass="59612" checksum="D248F59168A9DC71" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXP9</accession>
    <name>A0A0M2UXP9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Omega-protein</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Relaxing enzyme</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="2">Swivelase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Untwisting enzyme</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_00404</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000054">
        <property type="protein sequence ID" value="KKO20868.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20868">
        <property type="protein sequence ID" value="KKO20868"/>
        <property type="gene ID" value="BROFUL_00404"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.505"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003917">
        <property type="term" value="F:DNA topoisomerase type I (single strand cut, ATP-independent) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006265">
        <property type="term" value="P:DNA topological change"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03363">
        <property type="entry name" value="TOPRIM_TopoIA_TopoI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000380">
        <property type="entry name" value="Topo_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003601">
        <property type="entry name" value="Topo_IA_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023406">
        <property type="entry name" value="Topo_IA_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013497">
        <property type="entry name" value="Topo_IA_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013824">
        <property type="entry name" value="Topo_IA_cen_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013825">
        <property type="entry name" value="Topo_IA_cen_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013826">
        <property type="entry name" value="Topo_IA_cen_sub3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023405">
        <property type="entry name" value="Topo_IA_core_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005733">
        <property type="entry name" value="TopoI_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006171">
        <property type="entry name" value="TOPRIM_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034149">
        <property type="entry name" value="TOPRIM_TopoI"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42785">
        <property type="entry name" value="PTHR42785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01131">
        <property type="entry name" value="Topoisom_bac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01751">
        <property type="entry name" value="Toprim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00417">
        <property type="entry name" value="PRTPISMRASEI"/>
    </dbReference>
    <dbReference type="SMART" id="SM00436">
        <property type="entry name" value="TOP1Bc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00493">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56712">
        <property type="entry name" value="SSF56712"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01051">
        <property type="entry name" value="topA_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00396">
        <property type="entry name" value="TOPOISOMERASE_I_PROK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50880">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 7" id="KW-0413">Isomerase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Toprim" evidence="6">
        <location>
            <begin position="6"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00030003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00031985"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00032235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00032877"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20868.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="369" mass="41256" checksum="03167109B5D731D3" modified="2015-11-11" version="1">MAKAKKNMVIVESPAKAKTIGKYLGSSFFVCSSMGHVRDLPEKKLSVDIENNFTPEYKIIPSRKKLISELLAGAKKADAIYLASDLDREGEAIAWHLTQALGIPDEKAKRVTFNEITKDAILEAFNHPSSINMAKVNAQQARRILDRIVGYQISPLLWKKISKGLSAGRVQSVAVRLIVEREREIRDFKPQEYWKITAELKTIAGEKPGDAKTFKAILQKLNNETIEIKNEPQATDIVSELQKAGYSVANVKKQTKRNNAPPPFTTSLLQQQASTRLQFTAKKTMLIAQQLYEGIDLGREGAVGLITYMRTDSFHISEQAITSCRKLIAESYGNNYLPEKPNLHASDKKGTQALTRPSVLRRLNTHLNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXS5</accession>
    <name>A0A0M2UXS5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Chorismate pyruvate-lyase</fullName>
            <ecNumber evidence="1">4.1.3.40</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00380</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.3.40" evidence="1"/>
    <dbReference type="EMBL" id="LAQJ01000048">
        <property type="protein sequence ID" value="KKO20893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20893">
        <property type="protein sequence ID" value="KKO20893"/>
        <property type="gene ID" value="BROFUL_00380"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008813">
        <property type="term" value="F:chorismate lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1410.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028978">
        <property type="entry name" value="Chorismate_lyase_/UTRA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002800">
        <property type="entry name" value="Rv2949c-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01947">
        <property type="entry name" value="DUF98"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64288">
        <property type="entry name" value="SSF64288"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="1" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20893.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="192" mass="22477" checksum="561425B3C5DFB1B8" modified="2015-11-11" version="1">MDIGDSSNRGLLRIDLQTSLKRSPLNPKDITPFQRILLTTDGMVTEMLEAYLWERMKVIKLFQGYFVADNENPFLEIAKGCRVMQRKVLLCGRLSQKNHLYADSIIIPDRLDERIKDSLLNTNKPIGLLILENRLETFREILDCGKEEAEDLADYFNIRRSEFLIFRTYRVFSNRLPIMLITEKFPESGMRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXX9</accession>
    <name>A0A0M2UXX9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative sulfotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00328</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000040">
        <property type="protein sequence ID" value="KKO20948.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20948">
        <property type="protein sequence ID" value="KKO20948"/>
        <property type="gene ID" value="BROFUL_00328"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008146">
        <property type="term" value="F:sulfotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037359">
        <property type="entry name" value="NST/OST"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000863">
        <property type="entry name" value="Sulfotransferase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10605">
        <property type="entry name" value="PTHR10605"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00685">
        <property type="entry name" value="Sulfotransfer_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Sulfotransfer_1" evidence="2">
        <location>
            <begin position="8"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20948.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="240" mass="28292" checksum="E54101C074A5EDAF" modified="2015-11-11" version="1">MQLKVVGVGPQKTGTTWLDRCLREHPQLCFPQGTKETFFFDERFDKGWSWYWTHFRYCMNSQFCAEIGPTYFDVPEAAARLYRHNQNCRIIITLRDPASRSFSLYLHYKLYGELRCEFHEAIMHMPRIIESSRYRMHLGRWLEIFGKEHVLIILQDDIAAFPGQVLKQVYNFIGIDDVPLPVLAEEHVNIASYTVFPSLSRFCNSMANFLRGRRLHSPVNFFKNLGLKRIYTSTSEFSQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY02</accession>
    <name>A0A0M2UY02_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Caspase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00830</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000104">
        <property type="protein sequence ID" value="KKO20445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20445">
        <property type="protein sequence ID" value="KKO20445"/>
        <property type="gene ID" value="BROFUL_00830"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029030">
        <property type="entry name" value="Caspase-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52129">
        <property type="entry name" value="SSF52129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="335" mass="38073" checksum="0356B1F78C7966CB" modified="2015-11-11" version="1">MGKKALLVGVNKYKYVRPLNGCVNDVRNMVDILTSFYGFRTDEIRTIVDEGVTRNNLMNRFDWLLDEAREGDILVFHFSGHGSQIQDRDGDELEDSLDEILCLHDMDFRNPDSYLLDDDFNDIIDRIPKGAFLTVCIDSCHSGTATRDLAYLTSQLQISPGEIKIQPRFIEPPADVALRSYRRMAAVRRMGARIKEDKKNTASETSAKAKHILLSGCMDDQTSADAFISNDYHGAFTYNLCKTIRDTRGTITYQELVKRVQNSLAYNSFSQIPQLFGNEDLKNTRFLSAAMKTELTCEHGHPLICSEGIRRKVTRVRFLQTPPYQISNPRGIMGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY33</accession>
    <name>A0A0M2UY33_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">50S ribosomal protein L5</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rplE</name>
        <name evidence="9" type="ORF">BROFUL_01911</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA and the P site tRNA. Forms a bridge to the 30S subunit in the 70S ribosome.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the universal ribosomal protein uL5 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19384">
        <property type="protein sequence ID" value="KKO19384"/>
        <property type="gene ID" value="BROFUL_01911"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2380"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01333_B">
        <property type="entry name" value="Ribosomal_L5_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002132">
        <property type="entry name" value="Ribosomal_L5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020930">
        <property type="entry name" value="Ribosomal_L5_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031309">
        <property type="entry name" value="Ribosomal_L5_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020929">
        <property type="entry name" value="Ribosomal_L5_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022803">
        <property type="entry name" value="Ribosomal_L5_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031310">
        <property type="entry name" value="Ribosomal_L5_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11994">
        <property type="entry name" value="PTHR11994"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00281">
        <property type="entry name" value="Ribosomal_L5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00673">
        <property type="entry name" value="Ribosomal_L5_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002161">
        <property type="entry name" value="Ribosomal_L5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55282">
        <property type="entry name" value="SSF55282"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00358">
        <property type="entry name" value="RIBOSOMAL_L5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="5" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_L5" evidence="7">
        <location>
            <begin position="24"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="domain" description="Ribosomal_L5_C" evidence="8">
        <location>
            <begin position="85"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00029522"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01333"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00673"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="180" mass="20514" checksum="B1758DCB14A14928" modified="2015-11-11" version="1">MARLIEKYKQQVVPQLIEKFKYKNTISVPRIQKIVVNMGIGRSTENKKLIEEATKHLTVITGQKPLVTKAKKAISGFKLRKDQAIGCKVTLRGRRMYEFLDRLISIVLPRIRDFRGLSPKSFDGRGNYTIGLTEQIVFPEITIESVEFVQGMDITIVVTGNSNEQSCMLLKLLGMPFRLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY34</accession>
    <name>A0A0M2UY34_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Molybdenum cofactor biosynthesis protein A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">moeA</name>
        <name evidence="6" type="ORF">BROFUL_01430</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000146">
        <property type="protein sequence ID" value="KKO19871.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19871">
        <property type="protein sequence ID" value="KKO19871"/>
        <property type="gene ID" value="BROFUL_01430"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023885">
        <property type="entry name" value="4Fe4S-binding_SPASM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034391">
        <property type="entry name" value="Cmo-like_SPASM_containing"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13186">
        <property type="entry name" value="SPASM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01387">
        <property type="entry name" value="BtrN-like_SPASM_domain_contain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="5">
        <location>
            <begin position="21"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19871.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="328" mass="38024" checksum="E444DA7D9D9F54DA" modified="2015-11-11" version="1">MLTNPLHLIKGVVGRTFYAIPRRPERIQIEITNRCNYTCGMCPRESFNLPEQDISLDLFKKIIDRIDSIYNITLTGWGEPLLHPELVDMILYTKNKGHHVGVTTNGLLLASFIEKFLETLDKLTISLDSVKEGHGVTDGHPSNMVVQKNIESLLHDRGNRRKPTVTIQITMHDKSQCLDTIRFAGEVGADRVYLVRLNNQLGNNGCKRPSLKEELTIYKMAEEIAEKYGLQVDNNYTAFENRLLRLFYKQLRPVMYQFDKYCPKPYDYLYINIDGKATPCCDLPRYEVGNLLKRDIDEIWHGENIHYFREHQNDVCGNCDALRLKHLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY80</accession>
    <name>A0A0M2UY80_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00764</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000096">
        <property type="protein sequence ID" value="KKO20520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20520">
        <property type="protein sequence ID" value="KKO20520"/>
        <property type="gene ID" value="BROFUL_00764"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="167" mass="18629" checksum="EB451B6DCA17DE21" modified="2015-11-11" version="1">MKDITSSAISIQPLLQGLYQGDAGKVKETLEEIGRMGKGNREAMKALQEFLKREKRMPLRILATQIISQVKEYTPPPAEKLKKPGIFQCPGAEKIKRVEIIDVACPHCHKQGTASVAGFEHEFACELCGKTVQREVPESCVEKCPVGSECVGEERYRKYLKGRKKAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYA4</accession>
    <name>A0A0M2UYA4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Lipopolysaccharide core biosynthesis protein</fullName>
            <ecNumber evidence="3">2.4.1.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rfaG_1</name>
        <name evidence="3" type="ORF">BROFUL_00205</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.-" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000025">
        <property type="protein sequence ID" value="KKO21068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21068">
        <property type="protein sequence ID" value="KKO21068"/>
        <property type="gene ID" value="BROFUL_00205"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028098">
        <property type="entry name" value="Glyco_trans_4-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13439">
        <property type="entry name" value="Glyco_transf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_4-like_N" evidence="2">
        <location>
            <begin position="13"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="domain" description="Glycos_transf_1" evidence="1">
        <location>
            <begin position="241"/>
            <end position="398"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO21068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="422" mass="47692" checksum="F72286112DD48647" modified="2015-11-11" version="1">MKILHINQQDACGGAAAIANCLVERLNNYGIHSELWYFNRKGTDGRYSKCIYPGLEHYRKNIFLNTILSKLVYYHYLYLGDVRNPFFTGVVKRIHEWKPSIIHLHNLHGGWADLMSIAKLSEQIRVIITLHDEWLITGHCGITVDCVGWQDSCSVCPDLLRYIPVNRPITKKLRKEKSTFLAMLAKNKAILVAPTAWIKRQFITSGLWEGGEIIVIPNGIDTSIFEKQKIDKSYARKELNLLSDEKIAFFAAEGGTANPWKGFPAITEALKMFPDKRKFTILVAGDVIESRIIERVKDVDIVKVGYANKETLNKCYAAADIFIYPTKSDNCSLALLEAMAAGLPIIATAVGGNPELIVQKETGILVPKERPDLLMQAILDFMDNKYDYAAMGLKAKERAISFFDKELMVSKYVNLYQKCMNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYC4</accession>
    <name>A0A0M2UYC4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00432</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000057">
        <property type="protein sequence ID" value="KKO20847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20847">
        <property type="protein sequence ID" value="KKO20847"/>
        <property type="gene ID" value="BROFUL_00432"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="115" mass="13445" checksum="0A35E8C039AD1C92" modified="2015-11-11" version="1">MRLAPFPGNELKYGKKPMHSSFVKLHENCQSIEVTDNVWAFENTVSSTWGGNWKKTFKAKLRISERNLLLWLGDGPFPESIWVPPGFTTLSGKAARDEWNRRRDEWLRRVRPSEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYF2</accession>
    <name>A0A0M2UYF2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Peptidyl-prolyl cis-trans isomerase</fullName>
            <shortName evidence="1">PPIase</shortName>
            <ecNumber evidence="1">5.2.1.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01282</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[protein]-peptidylproline (omega=180) = [protein]-peptidylproline (omega=0)</text>
            <dbReference type="Rhea" id="RHEA:16237"/>
            <dbReference type="Rhea" id="RHEA-COMP:10747"/>
            <dbReference type="Rhea" id="RHEA-COMP:10748"/>
            <dbReference type="ChEBI" id="CHEBI:83833"/>
            <dbReference type="ChEBI" id="CHEBI:83834"/>
            <dbReference type="EC" id="5.2.1.8"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the cyclophilin-type PPIase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.2.1.8" evidence="1"/>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20011.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20011">
        <property type="protein sequence ID" value="KKO20011"/>
        <property type="gene ID" value="BROFUL_01282"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000413">
        <property type="term" value="P:protein peptidyl-prolyl isomerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.100.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029000">
        <property type="entry name" value="Cyclophilin-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002130">
        <property type="entry name" value="Cyclophilin-type_PPIase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044665">
        <property type="entry name" value="E_coli_cyclophilin_A-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43246">
        <property type="entry name" value="PTHR43246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00160">
        <property type="entry name" value="Pro_isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00153">
        <property type="entry name" value="CSAPPISMRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50891">
        <property type="entry name" value="SSF50891"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50072">
        <property type="entry name" value="CSA_PPIASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0697">Rotamase</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006517628" description="Peptidyl-prolyl cis-trans isomerase" evidence="1">
        <location>
            <begin position="22"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="domain" description="PPIase cyclophilin-type" evidence="2">
        <location>
            <begin position="31"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20011.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="155" mass="17595" checksum="C8BE84D743200D57" modified="2015-11-11" version="1">MKKFIVILVITFFCFAQPVMATSPNPRVRLETNKGTIILELNQKAAPKTVENFLGYVSNGFYNGTIFHRVIKDFMIQGAVLPPICNKNPHKLPLQTKPTTGSKIFVAPWRWHVPWILILPQRNSLLTPLTTPSLTTKGRIPTTGVIVYLEKLWRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYI8</accession>
    <name>A0A0M2UYI8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">MotA_ExbB domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_00633</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Membrane</location>
            <topology evidence="1 6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the exbB/tolQ family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20650.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20650">
        <property type="protein sequence ID" value="KKO20650"/>
        <property type="gene ID" value="BROFUL_00633"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002898">
        <property type="entry name" value="MotA_ExbB_proton_chnl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01618">
        <property type="entry name" value="MotA_ExbB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0653">Protein transport</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="123"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="159"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="domain" description="MotA_ExbB" evidence="8">
        <location>
            <begin position="103"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004057"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20650.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="216" mass="24700" checksum="30FF2A8C90FDFDF1" modified="2015-11-11" version="1">MSTINVLQNTLSLISSAMLYPVMILLIIFFIWMIIIVGGFVSEYAERRGLGGRRDPKEFVGYFTESSPLQIQKIQGMPRYFRVYVDELVNELRMGDHGKEIRVEYLLQSKEQEMTRSLDKLRLMIRAGPTLGLMGTIIPMGPALSALSHGDLEKLSSNIIIAFTTTVVGLAIGIVAYFLSMMKNRWIHEDIKNLEYFTEYIMKDKESFASEERRQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYJ8</accession>
    <name>A0A0M2UYJ8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF362 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00367</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000047">
        <property type="protein sequence ID" value="KKO20897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20897">
        <property type="protein sequence ID" value="KKO20897"/>
        <property type="gene ID" value="BROFUL_00367"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007160">
        <property type="entry name" value="DUF362"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04015">
        <property type="entry name" value="DUF362"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF362" evidence="1">
        <location>
            <begin position="267"/>
            <end position="468"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20897.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="485" mass="55280" checksum="CD8993AEA7B0F7FE" modified="2015-11-11" version="1">MSFKPVEQITGLIPDTFEQEVRKYLTFFPLLGYFTIPHKVKVKSGTISITDAQGTTTYSLDPESTFGEGELGEINNLKEPTLYYNYLCGIDPAGQSLFLKMNSGTLRNEREWYFKDLIDKALGKVIQRNIRKNLILKDSIAENPAEPKVVNNKILTLVNDHYPSGVLLRRIVQIENNGKTFYGLEEYIDAINTAPINSDKETVVAVSTYKDADAWDGKPASKEKVLDIYQSPEKFKVLDKAMEESGFFQTLENALARSGKSREDFSIIIKPNFMFFYSLADKSTFTDPALVEHLAERIYEKGFRKIRIAEARSTLSNFFSNRDVTAVAKHIGYQDGGKYQVIDLSDNLEDWDYGGKLGKHYVNKEWKSADFRISFAKNKTHNYAYYTLTLKNIYGALPMEFKYKVYHCDMGDIYEPTIDYIRAFPIHFGFIDAVVSADGPFGIFADPYPQLTQTIIAGEDIVAVDWVAPPRWAWIPCCPDTCRKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYQ2</accession>
    <name>A0A0M2UYQ2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Tyrosine recombinase XerC</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="primary">xerC_3</name>
        <name evidence="11" type="synonym">xerC</name>
        <name evidence="15" type="ORF">BROFUL_00542</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC-XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">Forms a cyclic heterotetrameric complex composed of two molecules of XerC and two molecules of XerD.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the 'phage' integrase family. XerC subfamily.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the 'phage' integrase family. XerD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000076">
        <property type="protein sequence ID" value="KKO20730.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20730">
        <property type="protein sequence ID" value="KKO20730"/>
        <property type="gene ID" value="BROFUL_00542"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.680"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009037">
        <property type="term" value="F:tyrosine-based site-specific recombinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007059">
        <property type="term" value="P:chromosome segregation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01808">
        <property type="entry name" value="Recomb_XerC_XerD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044068">
        <property type="entry name" value="CB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004107">
        <property type="entry name" value="Integrase_SAM-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011931">
        <property type="entry name" value="Recomb_XerC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011932">
        <property type="entry name" value="Recomb_XerD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023009">
        <property type="entry name" value="Tyrosine_recombinase_XerC/XerD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02899">
        <property type="entry name" value="Phage_int_SAM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02224">
        <property type="entry name" value="recomb_XerC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02225">
        <property type="entry name" value="recomb_XerD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51900">
        <property type="entry name" value="CB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="5 11" id="KW-0132">Cell division</keyword>
    <keyword evidence="6 11" id="KW-0159">Chromosome partition</keyword>
    <keyword evidence="4 11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 11" id="KW-0229">DNA integration</keyword>
    <keyword evidence="9 11" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="8 11 12" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Core-binding (CB)" evidence="14">
        <location>
            <begin position="1"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="domain" description="Tyr recombinase" evidence="13">
        <location>
            <begin position="106"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="146"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="170"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="235"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="238"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="261"/>
        </location>
    </feature>
    <feature type="active site" description="O-(3'-phospho-DNA)-tyrosine intermediate" evidence="11">
        <location>
            <position position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KKO20730.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="289" mass="33114" checksum="E37CC42456C7DF86" modified="2015-11-11" version="1">MQSCIDKYLVHLEHNRNFSSQTLRAYRNDLYQYLAFLLEEGCRDLESVTRLLLRRFLAFLKKRDYSKTTIARKLVSIRSLYKFLCREGVLKCNPAENIRAPKLEKKLPGFMSVRQIETLLNLPGLSTVTGIRDRAIMETLYSTGMRVSELVGTDVSDIDFFNEVVKVKGKGRKERLQPIGNHALDAIRSYLKERGSDKKALFLNNRGGRLTERSVARMLEKYVKIAGLSLAISPHTFRHSFATHLLDNGADLRSVQELLGHANLSSTQIYTHITTERLKQVYDKAHPRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYQ9</accession>
    <name>A0A0M2UYQ9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Efflux transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00062</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000007">
        <property type="protein sequence ID" value="KKO21223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21223">
        <property type="protein sequence ID" value="KKO21223"/>
        <property type="gene ID" value="BROFUL_00062"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.77"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003423">
        <property type="entry name" value="OMP_efflux"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02321">
        <property type="entry name" value="OEP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="444" mass="49858" checksum="8FBFAECFC4D07A09" modified="2015-11-11" version="1">MNMQLISKPRIQRSMCICFILIVGVSAFLSNFRFMAFGKDSPATVADEKYQVSSKKISLEDAIRIAVEKNPQLQSTRDQIDAAIGELRQSRLYPNPVLELLAEEIPDNEIGLNQSQNLVAVTQPIITGGKRGLGIKVSEKSKEKNEFERDTVLLEVMANTKKAFYKVVGDQEGLVIARKVEEIAKGIYASEKLRFEAGEVAITNVLRAEVELSMAKNSVFHAEGVLQNSIKELQTVMGIPEDVIDGVTGNLLSKPGALALHELELQMSDNQPSLKASKKNIEVADTQLMLEKRQVIPDITVSAGYKRLSAENIDTVQLGVEIPAPFFNRNQGNIQKGKALAKKAKSENLSVYNELLFQLRRNFNSFNIERKRVMEYREKILPKADEALTLITRGYREGEFDYIDLLDAQRTWAETRISYVESLKNLNLIIADIERLAVTKIREQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYU2</accession>
    <name>A0A0M2UYU2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01138</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000123">
        <property type="protein sequence ID" value="KKO20136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20136">
        <property type="protein sequence ID" value="KKO20136"/>
        <property type="gene ID" value="BROFUL_01138"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="49"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="238"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="262"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="353"/>
            <end position="373"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="379" mass="42122" checksum="FDED72FFF516F1A7" modified="2015-11-11" version="1">MTLVVFFQVVVLLCISGVILLSATSLPYEIEDKTIYGILSKPVSRLKIIVGKITGFALLSALLLIILGLFNLVFVQYRASRLPEEYRGIVKARREFAASHFSIQGALHHARQGIVWIKGGRTGVAQWRFSDMKKIPENASDFEVEGNLKLESSRGFIETIPLVVRVEDEISGRGKTDVLLATIDKPFVLKIAPEIIQKNSVLNITVFPVLTTDYLGVTQMDVKVFSIQQGFVSNYGKAVLLTFLKFLLIVIIAVMGSTYLSAPVSIVAAFVVFFCGHVLAFIKDFSLLIQDHHAHEHAVPGALKAPNVLLVYMDYLIKKPLEWICFILPDFTRFDSLKFLLQGINIPGESVGISFGYTAVYAGVCLFLSAVILKKREFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYZ2</accession>
    <name>A0A0M2UYZ2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00233</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000029">
        <property type="protein sequence ID" value="KKO21032.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21032">
        <property type="protein sequence ID" value="KKO21032"/>
        <property type="gene ID" value="BROFUL_00233"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.285"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035069">
        <property type="entry name" value="TTHA1013/TTHA0281-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143100">
        <property type="entry name" value="SSF143100"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21032.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="84" mass="9298" checksum="CE296254C49978DF" modified="2015-11-11" version="1">MSEYLIPITIEPLEEGGYLATSHAIQGLIAQGRTIAETLEIARDVARKIVESCIEHHDPLPKELSAKLTHKGKFEIKIPVPLEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ07</accession>
    <name>A0A0M2UZ07_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00232</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the N-acetylmuramoyl-L-alanine amidase 2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000028">
        <property type="protein sequence ID" value="KKO21047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21047">
        <property type="protein sequence ID" value="KKO21047"/>
        <property type="gene ID" value="BROFUL_00232"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008745">
        <property type="term" value="F:N-acetylmuramoyl-L-alanine amidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009253">
        <property type="term" value="P:peptidoglycan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06583">
        <property type="entry name" value="PGRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.80.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036505">
        <property type="entry name" value="Amidase/PGRP_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002502">
        <property type="entry name" value="Amidase_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015510">
        <property type="entry name" value="PGRP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006619">
        <property type="entry name" value="PGRP_domain_met/bac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11022">
        <property type="entry name" value="PTHR11022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01510">
        <property type="entry name" value="Amidase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00644">
        <property type="entry name" value="Ami_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00701">
        <property type="entry name" value="PGRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55846">
        <property type="entry name" value="SSF55846"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="26"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="domain" description="N-acetylmuramoyl-L-alanine amidase" evidence="3">
        <location>
            <begin position="75"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="domain" description="PGRP" evidence="4">
        <location>
            <begin position="80"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00644"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO21047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="240" mass="27306" checksum="9E4363EFB58249EE" modified="2015-11-11" version="1">MYRKIFSILTRNLIGFGNRAVHPGEGIIQCLSLTMIIIASGLCISLLFFPGAKVKWANRHVTFDKSFHAQNLDHLCNTDVNHRPWEYIVIHHSATTKGNAARFDYYHREKRKWEHGLAYHFVIGNGSFSGDGEIEVGNRWKRQIHGAHTANAACNRVAIGICLVGDFENSDIPTENQIESLVRLIQYLSRKYSIPSSNILQHKQIHQKCTACPGKNFPFAEIKTRLLQIASKRNDLIQEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ16</accession>
    <name>A0A0M2UZ16_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative polysaccharide export protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00199</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000025">
        <property type="protein sequence ID" value="KKO21062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21062">
        <property type="protein sequence ID" value="KKO21062"/>
        <property type="gene ID" value="BROFUL_00199"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.244"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015159">
        <property type="term" value="F:polysaccharide transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003715">
        <property type="entry name" value="Poly_export"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019554">
        <property type="entry name" value="Soluble_ligand-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02563">
        <property type="entry name" value="Poly_export"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10531">
        <property type="entry name" value="SLBB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="SLBB" evidence="2">
        <location>
            <begin position="109"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="domain" description="SLBB" evidence="2">
        <location>
            <begin position="195"/>
            <end position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF10531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO21062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="280" mass="31191" checksum="8C605B855F3FE693" modified="2015-11-11" version="1">MIKYVVILFILCSNFIPLTLCYAEESKGVQYTVGVDDVLNISVHGHDNLRTEATVTSDGSISFPYIGTLYVKGMSLPEIEKEIANRLASGYIKYPVVAITLSTSKSMKFFVYGEVKNPGRYILEDNMTVLKAISAAGGITPDGFYGNVKLRRKQKDRKEYKEFDIDLKNTKESSINGDMPIESEDIVVIDRSYNFFVYGEVMKPGKFTLEDYTTVLKAISLAGGFAKYGSLDRVKILRTIPGKTEYENIKVDMKGAVNGQVGKDIRLKPEDIVVVLEGIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZC9</accession>
    <name>A0A0M2UZC9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_00963</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000116">
        <property type="protein sequence ID" value="KKO20331.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20331">
        <property type="protein sequence ID" value="KKO20331"/>
        <property type="gene ID" value="BROFUL_00963"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1211"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025662">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025944">
        <property type="entry name" value="Sigma_54_int_dom_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00158">
        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00675">
        <property type="entry name" value="SIGMA54_INTERACT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00688">
        <property type="entry name" value="SIGMA54_INTERACT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="7">
        <location>
            <begin position="1"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="6">
        <location>
            <begin position="133"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="5">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20331.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="444" mass="49968" checksum="F2CCF5445D708542" modified="2015-11-11" version="1">MAMAEMCRELLKSKGYTSDVVTNGKEAIERVTIQDAYTIILTDLVMPDMDGIEVLKKVKQQNPKADVIVMTSYGTVTNAVEAMKLGAADYLTKPFKRDELIIVIEKILQHQRLEGEIDRLRSELGEKYTFGNIIGESPKMKKVYEIISNVSNTEATILIQGETGTGKELVARAIHYNSGRKDNPFVKVDCASLAESLLESELFGHEKGAFTGAAKDRTGRFRTADRGTIFLDEIGNISLSVQAKLLRVLQDNEFEAVGSDDPIKINVRTIAATNADLEDRVEKGLFRRDLFYRLNVIRILLPPLRERSDDIPRLVSHFLSLHNKKNRKKVEGISREALSKFMSYHWPGNIRELENVIERAVILCKGTMIEPVDVPLYQEKIGSIQDLSGKSLQTLMDQVERQIIINTLELTHADKEKAMKILNISRASLYNKLNKHKIAGLLPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZJ3</accession>
    <name>A0A0M2UZJ3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00247</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000030">
        <property type="protein sequence ID" value="KKO21030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21030">
        <property type="protein sequence ID" value="KKO21030"/>
        <property type="gene ID" value="BROFUL_00247"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="41" mass="4941" checksum="491D3C4D3D969F3D" modified="2015-11-11" version="1">MYYQDIVRTDLALNTIIYFSIEEPKFVVNILNTMHIQLEHN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZJ5</accession>
    <name>A0A0M2UZJ5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter permease component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01364</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000141">
        <property type="protein sequence ID" value="KKO19914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19914">
        <property type="protein sequence ID" value="KKO19914"/>
        <property type="gene ID" value="BROFUL_01364"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="58"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="92"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="137"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="188"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="239"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="290"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="330"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="366"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="395"/>
            <end position="412"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="54"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="330"/>
            <end position="464"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="464" mass="51687" checksum="6E2AAEAEB3E030DB" modified="2015-11-11" version="1">MQKTLTLGLFFAIFLCTTFLPIMWMFGNSIFEDGAFSFFYYKSIFLAQEYVKAITNSLILASVTTALSAFLGVSVGFFLARANLPFQNVFKICFLIPFIIPSYITGIAWTNLLGKAGFLNKALSKYTFLSSGSVSDFIYSIYGASFILSITFFPVIMLLTEYALKNINPRLEESSLISGNTFLTLKKITLPLIAPAILSGVMIVFVLSLSEFGVPSFLQVNVLTTQIFTQFSAFYNEKAATALAFPLIAITMMIIMLERVYLQGKSFEILGRTTSNSTISYNLTWLRRTGLVFCTLVLLVFVVNPLSTLILNTKTLSAYYDAFLLARNGITNSIVFGSIGATFLTFMGFFLGYLSEKIRSGQKQSMAAFIWLFFAVPATVSGIGLIKLWNRPGGFFQGIYSSLWIIIIGYVVKFSPLSSRIMANYLKQMPHSMEETGIVMGASWFRVLRKILFPLQKHGLSPHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZM8</accession>
    <name>A0A0M2UZM8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01341</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000139">
        <property type="protein sequence ID" value="KKO19949.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19949">
        <property type="protein sequence ID" value="KKO19949"/>
        <property type="gene ID" value="BROFUL_01341"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19949.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="76" mass="8812" checksum="F867B9CAB788EB99" modified="2015-11-11" version="1">MSNTRINILLPEDVAQILSTVKNKSAYIAEAIKEKKLHDEKKRLRNKLEAAYKAAVNEDYEVYKEWEDTLSDGLEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V020</accession>
    <name>A0A0M2V020_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">4Fe-4S ferredoxin-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00082</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000008">
        <property type="protein sequence ID" value="KKO21200.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21200">
        <property type="protein sequence ID" value="KKO21200"/>
        <property type="gene ID" value="BROFUL_00082"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="1">
        <location>
            <begin position="3"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21200.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="65" mass="7437" checksum="66B68959C5CC6BA6" modified="2015-11-11" version="1">MKKSVVWFEESCIKCAMCAEEAPEVIEFEETGGPRLKEGVDITQHSEKIKRAAQYCPKDCIKHHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V086</accession>
    <name>A0A0M2V086_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01108</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20149">
        <property type="protein sequence ID" value="KKO20149"/>
        <property type="gene ID" value="BROFUL_01108"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="112" mass="12572" checksum="03649F828D6ED25C" modified="2015-11-11" version="1">MAMQLPNREKAYIPISKLKDYLLSETHSVGKSKAKFLRSVGFNDTNTHLLKQGLINIAHSQDIKETILSSHGVKYIIDGLLQTAAGESVKMRTVWIIDRDQGCPRFVTAYPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0S1</accession>
    <name>A0A0M2V0S1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">YcfA-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00509</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the HicA mRNA interferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000070">
        <property type="protein sequence ID" value="KKO20766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20766">
        <property type="protein sequence ID" value="KKO20766"/>
        <property type="gene ID" value="BROFUL_00509"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.920.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012933">
        <property type="entry name" value="HicA_mRNA_interferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038570">
        <property type="entry name" value="HicA_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07927">
        <property type="entry name" value="HicA_toxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-1277">Toxin-antitoxin system</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006620"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="76" mass="8718" checksum="6A235EFFC767C55B" modified="2015-11-11" version="1">MPKISPIPAGRLRKVFEKAGFKCARIEGDHFVYTKPGVTRPVVIPDWKEVPVFIIKNNMRTAGITREEYFSLLEEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V115</accession>
    <name>A0A0M2V115_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CARDB domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00421</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000057">
        <property type="protein sequence ID" value="KKO20836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20836">
        <property type="protein sequence ID" value="KKO20836"/>
        <property type="gene ID" value="BROFUL_00421"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011635">
        <property type="entry name" value="CARDB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07705">
        <property type="entry name" value="CARDB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CARDB" evidence="1">
        <location>
            <begin position="1"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="89" mass="9659" checksum="DAA67EC641F955BD" modified="2015-11-11" version="1">MTFTIENTGTKDAGSFLVRVVFDPIQSVVVNLGVVGLDAGMSQVFTVKTPPGGNCFDPDCTVCVLIDSESRIAELDEDNNYRCINKLEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V120</accession>
    <name>A0A0M2V120_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00431</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000057">
        <property type="protein sequence ID" value="KKO20846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20846">
        <property type="protein sequence ID" value="KKO20846"/>
        <property type="gene ID" value="BROFUL_00431"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="SSF51126"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="217" mass="24190" checksum="1DD4237A95D0BDCD" modified="2015-11-11" version="1">MRHVIVIGVLVVMAAVLPSFLVFGQQTSGNKRRQQDDGADSVVRLTGEHRKRVKLQNLKPGAVVDCTGAKFYLALADKNRDNNYILQIRKSIDTLVQNVEIIGDIPLTNSWNDQYHDNNSAAFSFIESHGGTLQDARITRSWDPLRAARDSNGHYTFRRVYAKDWRDDLIETDSGYPDVLIEDCLFDGGYSGYSCRQGAKARGPPMRPAAGCGPARF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V124</accession>
    <name>A0A0M2V124_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00414</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000056">
        <property type="protein sequence ID" value="KKO20856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20856">
        <property type="protein sequence ID" value="KKO20856"/>
        <property type="gene ID" value="BROFUL_00414"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.516"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004061">
        <property type="term" value="F:arylformamidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019441">
        <property type="term" value="P:tryptophan catabolic process to kynurenine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007325">
        <property type="entry name" value="KFase/CYL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037175">
        <property type="entry name" value="KFase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31118">
        <property type="entry name" value="PTHR31118"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04199">
        <property type="entry name" value="Cyclase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102198">
        <property type="entry name" value="SSF102198"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="211" mass="23559" checksum="E12C65677794C766" modified="2015-11-11" version="1">MKPPFYDVTLTISDTLITWPADPAVSIRKTSLISRGDPCNLSELTFGSHCGTHIDAPYHLKENGISVDHIPLDTLIGNAKVFEIKNKEKIDAENLKSLEIEKCERVIFKTINSTYWKHSAFIEDFVYLTQAAAAYLAMHNVKLVGIDYLSVDKFDRVHADVHHILLNKGIIIIEGLDLNEVKPGEYELIALPLKIKDGDGSPARVVLRGHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V160</accession>
    <name>A0A0M2V160_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00378</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000048">
        <property type="protein sequence ID" value="KKO20891.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20891">
        <property type="protein sequence ID" value="KKO20891"/>
        <property type="gene ID" value="BROFUL_00378"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.468"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011518">
        <property type="entry name" value="Transposase_36"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07592">
        <property type="entry name" value="DDE_Tnp_ISAZ013"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20891.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="285" mass="32039" checksum="57A441DED897120B" modified="2015-11-11" version="1">MVFNDGMQDANLLCQIKSRYSSLGPLMDERMRRQWAATEAQAYGRGGLSAVSSATGMSRNTIRKGKPKAAVDARLRKKGGGRKRLTETDPGLMNALERLVEPTSRGDPMSPLRWTCKSTVNLAEALTRQGHPIGAWTVGNLLRGAGYSLQGNRKTKEGSSHPDRNAQFEYINTTVQQFQDRGQPVISVDTKKKELVGPFKNGGREWQPKGEPEEVLVHDFIDKQLGKVIPYGVFDLSLNEGWVSVGIDHDTAQFAVQAIGRWWQKMGSKRYPYRQRIVDHRRWGW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V178</accession>
    <name>A0A0M2V178_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">2-dehydro-3-deoxyphosphooctonate aldolase</fullName>
            <ecNumber evidence="6">2.5.1.55</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">3-deoxy-D-manno-octulosonic acid 8-phosphate synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">KDO-8-phosphate synthase</fullName>
            <shortName evidence="6">KDO 8-P synthase</shortName>
            <shortName evidence="6">KDOPS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Phospho-2-dehydro-3-deoxyoctonate aldolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">kdsA</name>
        <name evidence="8" type="ORF">BROFUL_00344</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>D-arabinose 5-phosphate + H2O + phosphoenolpyruvate = 3-deoxy-alpha-D-manno-2-octulosonate-8-phosphate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:14053"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57693"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:85985"/>
            <dbReference type="EC" id="2.5.1.55"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Bacterial outer membrane biogenesis; lipopolysaccharide biosynthesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4 6">Carbohydrate biosynthesis; 3-deoxy-D-manno-octulosonate biosynthesis; 3-deoxy-D-manno-octulosonate from D-ribulose 5-phosphate: step 2/3.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5 6">Belongs to the KdsA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.55" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000044">
        <property type="protein sequence ID" value="KKO20911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20911">
        <property type="protein sequence ID" value="KKO20911"/>
        <property type="gene ID" value="BROFUL_00344"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.424"/>
    <dbReference type="UniPathway" id="UPA00030"/>
    <dbReference type="UniPathway" id="UPA00357">
        <property type="reaction ID" value="UER00474"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008676">
        <property type="term" value="F:3-deoxy-8-phosphooctulonate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019294">
        <property type="term" value="P:keto-3-deoxy-D-manno-octulosonic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00056">
        <property type="entry name" value="KDO8P_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006218">
        <property type="entry name" value="DAHP1/KDSA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006269">
        <property type="entry name" value="KDO8P_synthase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21057">
        <property type="entry name" value="PTHR21057"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00793">
        <property type="entry name" value="DAHP_synth_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01362">
        <property type="entry name" value="KDO8P_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0448">Lipopolysaccharide biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DAHP_synth_1" evidence="7">
        <location>
            <begin position="7"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00010499"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="272" mass="29880" checksum="06184DC194F96CC8" modified="2015-11-11" version="1">MRVTVRDFSIGRGHPLVFIAGPCVIESHEGCLKLAEKLKGIFQARKIPFIFKASYDKANRTSVHSYRGPGMKEGLKILADIQRQLNVPVLSDVHETEDVPFAAETLDVIQIPAFLCRQTDLVMAAAKTGKPVNVKKGQFLAPWDMKPVVEKIRSVGNEQILITERGASFGYNNLVSDMRSLVILRDLGYPVVYDATHSVQLPGGQGNVSGGERKMIMPLARAAVATGCDALFLEVHETPEKALSDAATMLPVNDLPRLIEQVVEIHRIVPCE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1B6</accession>
    <name>A0A0M2V1B6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00767</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000097">
        <property type="protein sequence ID" value="KKO20509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20509">
        <property type="protein sequence ID" value="KKO20509"/>
        <property type="gene ID" value="BROFUL_00767"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.973"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="50"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20509.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="143" mass="16599" checksum="32735162862337C8" modified="2015-11-11" version="1" fragment="single">MGRELERDKKQWEGRLIPKGLIVARYFATERKAIDNLEADRDAIVRQMEEMEEEHGGEEGLMADAKNDKDKITKASVQKRVKELTMDNEQGTIEDKEELKILKVYVKLAEQEAEESKKIRDAQAALEKKVFDKYKTLTEAEKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1G5</accession>
    <name>A0A0M2V1G5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Metal-dependent carboxypeptidase</fullName>
            <ecNumber evidence="1">3.4.17.19</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00286</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Release of a C-terminal amino acid with broad specificity, except for -Pro.</text>
            <dbReference type="EC" id="3.4.17.19"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="2">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase M32 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.17.19" evidence="1"/>
    <dbReference type="EMBL" id="LAQJ01000033">
        <property type="protein sequence ID" value="KKO20986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20986">
        <property type="protein sequence ID" value="KKO20986"/>
        <property type="gene ID" value="BROFUL_00286"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.348"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004181">
        <property type="term" value="F:metallocarboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001333">
        <property type="entry name" value="Peptidase_M32_Taq"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34217">
        <property type="entry name" value="PTHR34217"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02074">
        <property type="entry name" value="Peptidase_M32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006615">
        <property type="entry name" value="Zn_crbxpep_Taq"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00998">
        <property type="entry name" value="CRBOXYPTASET"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="active site" description="Proton donor/acceptor" evidence="3">
        <location>
            <position position="266"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="265"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="269"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="295"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR006615"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR006615-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR006615-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="501" mass="57670" checksum="826EE507E0222C00" modified="2015-11-11" version="1">MQENLNDLKKRLSEINDINHAVAVLGWDQQTYMPSGGAAARARQLATLSHIAHEKFIDDAIGRLLGELHEYAGGLPYDSDDASLIRVTKRDYDKARRVPSSLVSEIVHASAHAFEAWRKARNESRFSDFAPYLQRNLDLKKHYARCLGYTDCIYDPLLDEYEPGMKTSQVKTIFQTIKRELVPLVQTISAKLHLVDNAFLHQVFDEQAQWDIGIEAARLTGYDFERGRQDRSPHPFTTSFSVDDVRITTRILHDYFPAAFFATLHEVGHALYNQGIRPELEQTPLADGASLGAHESQSRLWENLVGRSRPFWKFFMPRLQTAFPEQFRKVTVEKMYCGVNRVEPSFIRVEADEITYNLHIMMRFELENALLEERLPVNDLPEAWNKKMQEYLGIAPPNDALGVLQDVHWSHGSFGYFPTYSLGNIFAAQLFDTIKRDIPDLDKRFEQGEFHGLLDWLRTHLHTHGRKFTLDELAKKITGASLKTDSFIAYLKGKYGEMYHF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1J2</accession>
    <name>A0A0M2V1J2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative metallophosphoesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00708</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the metallophosphoesterase superfamily. YfcE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20589.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20589">
        <property type="protein sequence ID" value="KKO20589"/>
        <property type="gene ID" value="BROFUL_00708"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024654">
        <property type="entry name" value="Calcineurin-like_PHP_lpxH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011152">
        <property type="entry name" value="Pesterase_MJ0912"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12850">
        <property type="entry name" value="Metallophos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000883">
        <property type="entry name" value="Pesterase_MJ0912"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metallophos_2" evidence="2">
        <location>
            <begin position="1"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008950"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20589.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="239" mass="26841" checksum="BC0DEFD664095FC5" modified="2015-11-11" version="1">MRYGVIGDVHSNYEALTAVVKELQAERVDKVLCTGDIIGYAAEPIPCIEIVRDLCCAIVAGNHDYAAVEKFPSAYFHADARNAIIWTAHQLTNEHVEFLKQLPLVEEVNDITLVHASLNRPEFFDYITTGAEAQLNLDLLKTRICFYGHSHVPLAIFLTKGNLHVDQGTTFDLRNADKALINVGSVGQPRDWDIRASYAIYDEKEKIVQIKRVKYNIQDTVNKIYKAGLPEVNALRLMG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1K1</accession>
    <name>A0A0M2V1K1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00270</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000031">
        <property type="protein sequence ID" value="KKO21021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21021">
        <property type="protein sequence ID" value="KKO21021"/>
        <property type="gene ID" value="BROFUL_00270"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.330"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038717">
        <property type="entry name" value="Tc1-like_DDE_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13358">
        <property type="entry name" value="DDE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0814">Transposable element</keyword>
    <feature type="domain" description="DDE_3" evidence="2">
        <location>
            <begin position="59"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO21021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="213" mass="24110" checksum="82744B7E0D22E5A1" modified="2015-11-11" version="1">MCQHDPEFGPKAADIGGLYLAPAENALVISVDEKPSIQALERTTGSVCTSNKKIVRGLKSTYKRHGTLNLFAALNVATGAIHTQTTELKRRVEFLAFMDQLLLDLPESDKKEVHVILDNYCIHKRNEGWLAAHPNVKFHFTPTSASWLNQVEIWFGILSRKALKNASFKSIEHLRTAIAEFIEAYQPNAKPFVWRKREVRGSQLRNTIRNLCN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1M4</accession>
    <name>A0A0M2V1M4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00231</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000028">
        <property type="protein sequence ID" value="KKO21046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21046">
        <property type="protein sequence ID" value="KKO21046"/>
        <property type="gene ID" value="BROFUL_00231"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21046.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="114" mass="12793" checksum="1CDB49B2F8BCFE43" modified="2015-11-11" version="1">MNKMVSTNTLFLVLIALLAITLLFKNTTNFVVAQGDGNARHVFGVVGERQGNRQPFYLVDTTEQTIMVYEYFQGGGLGFVAARNYQFDKKLQEHGKSYGLSIENVKAELLKVQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V237</accession>
    <name>A0A0M2V237_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">2,3-bisphosphoglycerate-dependent phosphoglycerate mutase</fullName>
            <shortName evidence="4">BPG-dependent PGAM</shortName>
            <shortName evidence="4">PGAM</shortName>
            <shortName evidence="4">Phosphoglyceromutase</shortName>
            <shortName evidence="4">dPGM</shortName>
            <ecNumber evidence="4 5">5.4.2.11</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">gpm</name>
        <name evidence="4" type="synonym">gpmA</name>
        <name evidence="6" type="ORF">BROFUL_00496</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 5">Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4 5">
            <text>(2R)-2-phosphoglycerate = (2R)-3-phosphoglycerate</text>
            <dbReference type="Rhea" id="RHEA:15901"/>
            <dbReference type="ChEBI" id="CHEBI:58272"/>
            <dbReference type="ChEBI" id="CHEBI:58289"/>
            <dbReference type="EC" id="5.4.2.11"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4 5">Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 3/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the phosphoglycerate mutase family. BPG-dependent PGAM subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.2.11" evidence="4 5"/>
    <dbReference type="EMBL" id="LAQJ01000069">
        <property type="protein sequence ID" value="KKO20769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20769">
        <property type="protein sequence ID" value="KKO20769"/>
        <property type="gene ID" value="BROFUL_00496"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.622"/>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00186"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046538">
        <property type="term" value="F:2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07067">
        <property type="entry name" value="HP_PGM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01039">
        <property type="entry name" value="PGAM_GpmA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013078">
        <property type="entry name" value="His_Pase_superF_clade-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001345">
        <property type="entry name" value="PG/BPGM_mutase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005952">
        <property type="entry name" value="Phosphogly_mut1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11931">
        <property type="entry name" value="PTHR11931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00300">
        <property type="entry name" value="His_Phos_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00855">
        <property type="entry name" value="PGAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="SSF53254"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01258">
        <property type="entry name" value="pgm_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00175">
        <property type="entry name" value="PG_MUTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0312">Gluconeogenesis</keyword>
    <keyword evidence="2 4" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="3 4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="4">
        <location>
            <begin position="8"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="4">
        <location>
            <begin position="21"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="4">
        <location>
            <begin position="87"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="4">
        <location>
            <begin position="114"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="4">
        <location>
            <begin position="183"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="active site" description="Tele-phosphohistidine intermediate" evidence="4">
        <location>
            <position position="9"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="4">
        <location>
            <position position="87"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="60"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="98"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="4">
        <location>
            <position position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU004512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="249" mass="28724" checksum="B5784BCBD8CC20EA" modified="2015-11-11" version="1">MYKLVLVRHGESIWNRDNLFTGWTDVDLSEKGVQEARQAGKTLKAEGYAFDMAFTSVLKRAIRTLWIILDEMDLMWIPVTRDWRLNERHYGALQGLNKAETTEKYGEQQVKLWRRSYDIQPPALEPNDPRSPALDQRYKELKKGHIPFTECLKDTVERFLPCWHEVIAPTIRSGKKVIIAAHGNSLRALVKYLDTISDKDIVELNIPTGIPLVYELEDDLTPRHSYYLGDPEMVKQATQAVASQLKKKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2N8</accession>
    <name>A0A0M2V2N8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">ABC transporter ATP-binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_00299</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily. ABCF family. Translational throttle EttA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000035">
        <property type="protein sequence ID" value="KKO20964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20964">
        <property type="protein sequence ID" value="KKO20964"/>
        <property type="gene ID" value="BROFUL_00299"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.362"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045900">
        <property type="term" value="P:negative regulation of translational elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032781">
        <property type="entry name" value="ABC_tran_Xtn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022374">
        <property type="entry name" value="EttA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43858">
        <property type="entry name" value="PTHR43858"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12848">
        <property type="entry name" value="ABC_tran_Xtn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="6" id="KW-0810">Translation regulation</keyword>
    <keyword evidence="2" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="20"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="52"/>
            <end position="59"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005868"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="456" mass="51499" checksum="E6AD6554611DE7FF" modified="2015-11-11" version="1">MLNFFYEAVSMSNQPDKIIYSMYRVSKHYEKKAVLKDISLSYFYGAKIGVLGLNGSGKSSLLRILAGADKDFNGQVTLSPGYTVGFLEQEPHLDDTKTVREIVEEGVQELADLHKEYNRINDQFSEPMSDNEMNKLIERQGEVQGKIDALGAWDLDARLEMAMDALRCPEGNTPVKVLSGGERRRAALCRLLLQEPDILLLDEPTNHLDAETVAWLEHHLQSYEGTVIAVTHDRYFLDNVAGWILELDRGYGIPWKGNYSSWLEQKQQKLQQEEKQETERQKTLQRELEWIRMTPKGRHAKSKARIKSYESLLDQQGESRIKDLEIYIPAGPRLGNLIIEAEKVTKAYGDRILVDGMTFSLPRGGIVGIIGPNGAGKTTLFRMITNQEKPDAGSIRVGESVKLAYVDQSRTTLDPKKTIWEIISGGRDTIKLGSREVNSRAYVARFNFSGAISKNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V385</accession>
    <name>A0A0M2V385_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Putative pterin-4-alpha-carbinolamine dehydratase</fullName>
            <shortName evidence="4">PHS</shortName>
            <ecNumber evidence="4">4.2.1.96</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">4-alpha-hydroxy-tetrahydropterin dehydratase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Pterin carbinolamine dehydratase</fullName>
            <shortName evidence="4">PCD</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">phhB</name>
        <name evidence="5" type="ORF">BROFUL_00125</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 4">
            <text>(4aS,6R)-4a-hydroxy-L-erythro-5,6,7,8-tetrahydrobiopterin = (6R)-L-erythro-6,7-dihydrobiopterin + H2O</text>
            <dbReference type="Rhea" id="RHEA:11920"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15642"/>
            <dbReference type="ChEBI" id="CHEBI:43120"/>
            <dbReference type="EC" id="4.2.1.96"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the pterin-4-alpha-carbinolamine dehydratase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.96" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000016">
        <property type="protein sequence ID" value="KKO21124.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21124">
        <property type="protein sequence ID" value="KKO21124"/>
        <property type="gene ID" value="BROFUL_00125"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.157"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008124">
        <property type="term" value="F:4-alpha-hydroxytetrahydrobiopterin dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006729">
        <property type="term" value="P:tetrahydrobiopterin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00434">
        <property type="entry name" value="Pterin_4_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036428">
        <property type="entry name" value="PCD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001533">
        <property type="entry name" value="Pterin_deHydtase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12599">
        <property type="entry name" value="PTHR12599"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01329">
        <property type="entry name" value="Pterin_4a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55248">
        <property type="entry name" value="SSF55248"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO21124.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="109" mass="12212" checksum="BEACBA49C42B2E2D" modified="2015-11-11" version="1">MSELASKKCVPCKGGVPPLKGEALQALQKQVEGWDVVEEHHLFKAFKFPDFRKALDFVNRVGEIAEQEGHHPVITLTWGKVEIKVYTHKINGLTESDFILAAKIDTISK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V3G9</accession>
    <name>A0A0M2V3G9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00048</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000007">
        <property type="protein sequence ID" value="KKO21209.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21209">
        <property type="protein sequence ID" value="KKO21209"/>
        <property type="gene ID" value="BROFUL_00048"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21209.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="82" mass="9742" checksum="D2B443AAB0B67EA4" modified="2015-11-11" version="1">MTVTMHFDGTLHVVIASEAKQSFTHKKRYLLKGAYEKTYKKKKFLYSNTIERIFQKAKLLRISKDDFNTFSKNRNKNNPVRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V3K9</accession>
    <name>A0A0M2V3K9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Tryptophan synthase alpha chain</fullName>
            <ecNumber evidence="7">4.2.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">trpA</name>
        <name evidence="9" type="ORF">BROFUL_00021</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate + L-serine = D-glyceraldehyde 3-phosphate + H2O + L-tryptophan</text>
            <dbReference type="Rhea" id="RHEA:10532"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:57912"/>
            <dbReference type="ChEBI" id="CHEBI:58866"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="4.2.1.20"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 5/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Tetramer of two alpha and two beta chains.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7 8">Belongs to the TrpA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.20" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000005">
        <property type="protein sequence ID" value="KKO21249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21249">
        <property type="protein sequence ID" value="KKO21249"/>
        <property type="gene ID" value="BROFUL_00021"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.31"/>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00044"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004834">
        <property type="term" value="F:tryptophan synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04724">
        <property type="entry name" value="Tryptophan_synthase_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00131">
        <property type="entry name" value="Trp_synth_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018204">
        <property type="entry name" value="Trp_synthase_alpha_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002028">
        <property type="entry name" value="Trp_synthase_suA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43406">
        <property type="entry name" value="PTHR43406"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00290">
        <property type="entry name" value="Trp_syntA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="SSF51366"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00262">
        <property type="entry name" value="trpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00167">
        <property type="entry name" value="TRP_SYNTHASE_ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="5 7" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="6 7" id="KW-0456">Lyase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="active site" description="Proton acceptor" evidence="7">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="7">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00131"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO21249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="267" mass="29408" checksum="BA039B4CC77A7836" modified="2015-11-11" version="1">MNRIDKKFQELKAKKKPAFIPFITAGDPDLQITKDLILEFEKRGADIIELGIPFSDPIADGPIIQASYYRALMKGVKVAHILDMVSEVRKKSEIPIVSMVSYSTVFKKGCQHFIENALKAGLDGLTIPDLPVEENSELFEIAERNNFKIICFVAPTTTDHRMTMIAERAQGFLYYISVVGITGIRDALPDDIVQNIGRLKQLTKVPVAVGFGVSTSDHAKMIGTVADGVIVGSAIMREIVKFEKEPAEKLIRSVGDFVKQLISGAKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPD3</accession>
    <name>A0A0M2UPD3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putative transporter protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_03326</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000305">
        <property type="protein sequence ID" value="KKO17983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17983">
        <property type="protein sequence ID" value="KKO17983"/>
        <property type="gene ID" value="BROFUL_03326"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="84"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="111"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="155"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="180"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="233"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="263"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="296"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="319"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="355"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="384"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="212"/>
            <end position="422"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO17983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="422" mass="47655" checksum="C638ADCC32E61D00" modified="2015-11-11" version="1">MEARHSKQQERIAVRRSLRYSIKDGVAFAATTGFGDNYLNPFAVALDASAFQIGLLSSASQFVPSLAQFKVADLTERFGSRKKVIVRSVFIHAFLLLPIALIPFLPEFVRVYALIGLCTLYVSFASFAGPAWGSLMANLVPERKRGAFFSRRGRLISLVMVVSSFLAGYILHFFQKQNLFGFTIIFLVAMISRYISCYFLSRMYEPPLEIKREHYFSLGEFLRRLNVGNFGKYVIFHSCFSFAVFIASPFFPVFMLRDLGFSYITYTIVTTTVPLASILAVSYWGQRADALGNRQIIWICSLVISVLPAMWLISQQIYFLIIIQILAGIFWAGFNLCSSNFIYDSVIPEKRTRCIAYFNTLNGFSICAGNLLGGFLATHLPSFFGYRLLALFAVSSLLRILTATLLLKRVKEIRKMDIAVAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPX2</accession>
    <name>A0A0M2UPX2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Uma2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03393</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17942">
        <property type="protein sequence ID" value="KKO17942"/>
        <property type="gene ID" value="BROFUL_03393"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4171"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd06260">
        <property type="entry name" value="DUF820"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1570.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012296">
        <property type="entry name" value="Nuclease_put_TT1808"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008538">
        <property type="entry name" value="Uma2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05685">
        <property type="entry name" value="Uma2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Uma2" evidence="1">
        <location>
            <begin position="32"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO17942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="203" mass="23621" checksum="6C7E04ACA0D4A0AB" modified="2015-11-11" version="1">MSLNFIKETRGKKTRSQVMVPVITEKKKYTYEDYLKTPDDKRYELITGELLMTPSPVPKHQSVSIELALRIKQFTTINNLGKVFCAPCDVYFDEENVVQPDILFISKNRLNSIGQKNIQGAPELIIEIISEYSVYRDMVQKKKLYARFGVKEYWIVLPDEKEIEVYILKDTLYQSYQTYGKADTLESPTLKGLQIVLKEIFSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ17</accession>
    <name>A0A0M2UQ17_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03325</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000305">
        <property type="protein sequence ID" value="KKO17982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17982">
        <property type="protein sequence ID" value="KKO17982"/>
        <property type="gene ID" value="BROFUL_03325"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="SSF49899"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="203" mass="21930" checksum="1E13FAF3EFF2091F" modified="2015-11-11" version="1">MAGDSSGNGHDGAVVGAVWTIGNDGSGLSSDGVDDEVSIPTMNSEEVSFGAWFYKNANDTKRHDFIFDGLRMHSDPQLREGFALKFLKRNPNVVGFAVVTQNASGMRKQRTVSYDLGNSVGGWNHVAGTYNKTTGEQKLYVNGQLVRMVRHPAGNSIVPLTSYPGMKIGNSLSKKGCFNGVIDGVCISHRALTEQEVLDIYNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ30</accession>
    <name>A0A0M2UQ30_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03322</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000304">
        <property type="protein sequence ID" value="KKO17992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17992">
        <property type="protein sequence ID" value="KKO17992"/>
        <property type="gene ID" value="BROFUL_03322"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4091"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032196">
        <property type="term" value="P:transposition"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025948">
        <property type="entry name" value="HTH-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038965">
        <property type="entry name" value="InsF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46889:SF1">
        <property type="entry name" value="PTHR46889:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13276">
        <property type="entry name" value="HTH_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="118"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO17992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="230" mass="27236" checksum="7F479E6B0648869A" modified="2015-11-11" version="1">MEIKERRGLIEPDNKEISVRRQCELLGLNRSNVYYEPVGVTEERLRLMHRVDEIFTEYPFYGSRRIQETLEREGIRVGRERVQRYMREMGLRAIYPKRSLSKRHPGYKIYPYLLRDKEISGPNAVWVTDITYLRLKRGFVYLTATIDWYSRYVVSWRISNTMEVTFCVEALEAALEKGSPEIFNSDQGSQFTSDEFTGTLLRKRIAISMDGRGRAFDNIFRFFSQLVNKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ55</accession>
    <name>A0A0M2UQ55_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">UDP-N-acetylhexosamine pyrophosphorylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03116</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UDPGP type 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000286">
        <property type="protein sequence ID" value="KKO18218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18218">
        <property type="protein sequence ID" value="KKO18218"/>
        <property type="gene ID" value="BROFUL_03116"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070569">
        <property type="term" value="F:uridylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039741">
        <property type="entry name" value="UDP-sugar_pyrophosphorylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002618">
        <property type="entry name" value="UDPGP_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11952">
        <property type="entry name" value="PTHR11952"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01704">
        <property type="entry name" value="UDPGP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010401"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="493" mass="56101" checksum="014587B61200EF31" modified="2015-11-11" version="1">MKHTHLPFIDYPANNKILTRELLEKEYPAFVRHIEKVFDAGQSHIFRWWSELTPSEKKNLLDQIATIDFCLIKKLFNSAVLRPAQTSQENLTPPHVIAFQKNDAEKEMAQRVKLIGESSLQKGEVAILTVAGGDGTRMGISVPKGTFSITPITQKSIFQLHAEKIIAGQKRYNIRIPWYIMTSKNNDAATQNFFKERQFFGLNPQQVFFFTQDMFPVVDLQGNVMMDLKSNIIMSPNGHGGVLVALKEKGVLNDMKRRGIKNIFYHQVDNVLIKIADPVFVGYHLRDEAEISLKVVKKCHAEEKVGIVVYINGNLHMIEYSELSRKDMYAKNEDGALKYHAGNIAVHMININFLEKVYQEGESLPYHAAIKKVPYLGEDGSVIDPKQNNAIKFESFIFDILRYVKKSVIMEVPREDEFSPVKNMEGENSPATSRQDMINQFGRWLRNIGVSIPTDSQGNVIGTIEISPGFALDEEELKTKVDKQLQFNGTLFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQM2</accession>
    <name>A0A0M2UQM2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03148</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000288">
        <property type="protein sequence ID" value="KKO18167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18167">
        <property type="protein sequence ID" value="KKO18167"/>
        <property type="gene ID" value="BROFUL_03148"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13174">
        <property type="entry name" value="TPR_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="17"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="96"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="169"/>
            <end position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="216" mass="24279" checksum="47AF841425D449EB" modified="2015-11-11" version="1">MKETALTVLKRLNKYKIYIAIGVGIAIAAGGGSAFFVIQKAKKDDFAWKNFWRINNDLATAVQQGKGEKEKTAALGTTAEAFKYMRDNLSSSSAVPWVVFQLGNVYYRLKNYDEAIRAYQDFLARHSGHSLAPIVRQSLGYAYEEKGLFQEAVQQFEYLSTHGQNFLVAQGNWDAGRCYEKLGLTSDAIRSYSKTIELSPKSNWASMAQYRLSAIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQN4</accession>
    <name>A0A0M2UQN4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03337</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000306">
        <property type="protein sequence ID" value="KKO17965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17965">
        <property type="protein sequence ID" value="KKO17965"/>
        <property type="gene ID" value="BROFUL_03337"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="41" mass="4734" checksum="8B6797EF1310C654" modified="2015-11-11" version="1">MEEPEETATLPTLHDFILRIQEMGFPPSVLYNLTVTNDEIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQP8</accession>
    <name>A0A0M2UQP8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative helicase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03090</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000286">
        <property type="protein sequence ID" value="KKO18192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18192">
        <property type="protein sequence ID" value="KKO18192"/>
        <property type="gene ID" value="BROFUL_03090"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3816"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140658">
        <property type="term" value="F:ATP-dependent chromatin remodeler activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10810">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038718">
        <property type="entry name" value="SNF2-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000330">
        <property type="entry name" value="SNF2_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00176">
        <property type="entry name" value="SNF2-rel_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0347">Helicase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="2">
        <location>
            <begin position="92"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="3">
        <location>
            <begin position="560"/>
            <end position="726"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="468"/>
            <end position="490"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18192.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="969" mass="111194" checksum="136E29F26A62D6A4" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR07</accession>
    <name>A0A0M2UR07_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HD-GYP domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03024</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18297.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18297">
        <property type="protein sequence ID" value="KKO18297"/>
        <property type="gene ID" value="BROFUL_03024"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037522">
        <property type="entry name" value="HD_GYP_dom"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51832">
        <property type="entry name" value="HD_GYP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HD-GYP" evidence="1">
        <location>
            <begin position="119"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18297.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="318" mass="36320" checksum="6D44A5E2A19E87A4" modified="2015-11-11" version="1">MNGSDVYIPVSLNTILINTNVGCDLYLKHYENKEIHYILYCEGTKVFSQEKVSGLKKNKIESLYIHERDQKIYLKYLEPCLKKIIDDDINKAEKARIVYDVAKNIMEDIFRDPRSGVPVGRVKDWVSNATAMIIRDQNASVLMNILSFDYYTYTHSVNVAVLGLLFMKYIDVELDEMNAVGIGLMLHDIGKTNVASDIINKKGALTDEEFEKVKMHVEFGGQRLSHADGIEEVSFLPVMQHHEKINGKGYPKGLEGNAIHRYGKIAAIIDVYDALTTKRPYCDARKPFTALKIMKDEMDGSFDKELFTEFILFLNQAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR18</accession>
    <name>A0A0M2UR18_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Aminotransferase</fullName>
            <ecNumber evidence="1">2.6.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03220</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.-" evidence="1"/>
    <dbReference type="EMBL" id="LAQJ01000294">
        <property type="protein sequence ID" value="KKO18090.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18090">
        <property type="protein sequence ID" value="KKO18090"/>
        <property type="gene ID" value="BROFUL_03220"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3965"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004838">
        <property type="entry name" value="NHTrfase_class1_PyrdxlP-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00105">
        <property type="entry name" value="AA_TRANSFER_CLASS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="82"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="domain" description="Aminotran_1_2" evidence="3">
        <location>
            <begin position="27"/>
            <end position="358"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18090.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="366" mass="41274" checksum="4248DFE7C35E0D0F" modified="2015-11-11" version="1">MMIAHRMSKIDSSGIRKVFDLAQKMQNPVNLSIGQPDFDVPEEIKTEAVKAIKDGMNKYTTTQGIPELRDGLRKRLREKRGVTAENIMITSGVSGALTLAFMVLVNPEDEVLIPDPAFVSYKHLASFCGGRPVFVDTYPDFQLTAARIQPHITKKTKAIIINSPANPTGVMCTGQDIKEIAELARRHNLVVISDEIYHEYDYHHEFESIGKYYENTLILDGFSKSFAMTGWRMGYATGPAGIIGEMIKLQQYTFVCAPSFAQHALSRSLETDLSTYRVSYKKKRDLMYEGLKDKFLIVKPGGAFYFFPQVPWGTDEEFVTAAIQKNLLVIPGRVFSERHTHFRVSYAASEETIKRGIDILNNLAKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URD8</accession>
    <name>A0A0M2URD8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative cytochrome b6</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02871</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000270">
        <property type="protein sequence ID" value="KKO18437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18437">
        <property type="protein sequence ID" value="KKO18437"/>
        <property type="gene ID" value="BROFUL_02871"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3554"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022904">
        <property type="term" value="P:respiratory electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.810.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005797">
        <property type="entry name" value="Cyt_b/b6_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027387">
        <property type="entry name" value="Cytb/b6-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016174">
        <property type="entry name" value="Di-haem_cyt_TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00033">
        <property type="entry name" value="Cytochrome_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81342">
        <property type="entry name" value="SSF81342"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51002">
        <property type="entry name" value="CYTB_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="58"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="114"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="144"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="224"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="domain" description="CYTB_NTER" evidence="2">
        <location>
            <begin position="26"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="256" mass="29412" checksum="D06A8B2A2F67B611" modified="2015-11-11" version="1">MKLIPDLIKKITDNEIWRSVFRHGYTDTPRNRALQIISNVWLHLHPAKVREHGTKIRFTWCMGGITFFIFLFETITGILLMFYYVPDVNRAYADIVDLMYVVPFGRFLRNSHRWGAHAMVITVSIHMFRVFLTGSYKPPRQFNWVVGVILLVLTFLLSFTGYLLPWDQLGYWAITVGTNMARATPFLGHEGPFSYILGMRADNDVRFALLGGTSIDAPALLRAYVWHCIAIPLMASALMMVHFWRVRKDGGISGPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URG9</accession>
    <name>A0A0M2URG9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ATP synthase subunit delta</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">ATP synthase F(1) sector subunit delta</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">F-type ATPase subunit delta</fullName>
            <shortName evidence="6">F-ATPase subunit delta</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">atpH</name>
        <name evidence="7" type="ORF">BROFUL_02845</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.</text>
    </comment>
    <comment type="function">
        <text evidence="6">This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the ATPase delta chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000268">
        <property type="protein sequence ID" value="KKO18462.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18462">
        <property type="protein sequence ID" value="KKO18462"/>
        <property type="gene ID" value="BROFUL_02845"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045261">
        <property type="term" value="C:proton-transporting ATP synthase complex, catalytic core F(1)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.520.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01416">
        <property type="entry name" value="ATP_synth_delta_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026015">
        <property type="entry name" value="ATP_synth_OSCP/delta_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000711">
        <property type="entry name" value="ATPase_OSCP/dsu"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11910">
        <property type="entry name" value="PTHR11910"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00213">
        <property type="entry name" value="OSCP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00125">
        <property type="entry name" value="ATPASEDELTA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47928">
        <property type="entry name" value="SSF47928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01145">
        <property type="entry name" value="ATP_synt_delta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0139">CF(1)</keyword>
    <keyword evidence="2 6" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="3 6" id="KW-0406">Ion transport</keyword>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 6" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18462.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="182" mass="20458" checksum="D910935A9CAF66C3" modified="2015-11-11" version="1">MLDKSIAITFIKALLEVASKKGQFEQIEKDLDLVCGVMKKHGNLKKVMFHPSISRSNKKDVLKNVFGKAVSSLMLNFLSLLVDRRKEEILEFIPEVYRAVTDEKKGVVKATVQTVDPLTGERLEHFRKQLKKITGKTVELEVLQNPDILGGMVIQIGNKMIDGSVASRLKNLKTRLLSLRTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URP4</accession>
    <name>A0A0M2URP4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Endoglucanase (Endo-1,4-beta-D-glucanase-carboxymethylcellulase)</fullName>
            <ecNumber evidence="2">3.2.1.4</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">bcsZ</name>
        <name evidence="2" type="ORF">BROFUL_02570</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyl hydrolase 8 (cellulase D) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.4" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000238">
        <property type="protein sequence ID" value="KKO18738.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18738">
        <property type="protein sequence ID" value="KKO18738"/>
        <property type="gene ID" value="BROFUL_02570"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008810">
        <property type="term" value="F:cellulase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008928">
        <property type="entry name" value="6-hairpin_glycosidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012341">
        <property type="entry name" value="6hp_glycosidase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002037">
        <property type="entry name" value="Glyco_hydro_8"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01270">
        <property type="entry name" value="Glyco_hydro_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00735">
        <property type="entry name" value="GLHYDRLASE8"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48208">
        <property type="entry name" value="SSF48208"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18738.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="371" mass="42902" checksum="D8C3A6F558C3EA41" modified="2015-11-11" version="1">MRMSGKRIIFALSMLYLFISGCSEMRISPEKQLRAWWKSYKKNFLLPDGRIQRPEHAYDTVSEGQAYAMIFSVFMDDKEAFDWIFRWTENHLGRSRKYGDHLLAWYWKDGDVSDWMPASDADGDYALALLQASRQWKEPAYREKAIEVISDIMKHEVVRGVDNRLYLLPGLWGKEKNGHLIQNPSYYNPAAFRRFYEATRDGQWLQLIETSYWLFHQASVRLDTIPGSGFIPDWCVVDAQGNIGKAEGRSTDYGWEAVRIPMRIGLDMLWYHPEEASKILGRILQLLQSSIPQNGGIKAVYQYTGEPTVEYGSLAADAMSYFLAQLMAAESDTIRASFKNRLTDESFMQNYYGQSMSFYPLALERGILKKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URP9</accession>
    <name>A0A0M2URP9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_02523</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the peptidase M50B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18743.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18743">
        <property type="protein sequence ID" value="KKO18743"/>
        <property type="gene ID" value="BROFUL_02523"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041489">
        <property type="entry name" value="PDZ_6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004387">
        <property type="entry name" value="Pept_M50_Zn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008915">
        <property type="entry name" value="Peptidase_M50"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42837">
        <property type="entry name" value="PTHR42837"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00595">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13180">
        <property type="entry name" value="PDZ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17820">
        <property type="entry name" value="PDZ_6"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02163">
        <property type="entry name" value="Peptidase_M50"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00228">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="SSF50156"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00054">
        <property type="entry name" value="TIGR00054"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50106">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="98"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="529"/>
            <end position="550"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="576"/>
            <end position="593"/>
        </location>
    </feature>
    <feature type="domain" description="PDZ" evidence="10">
        <location>
            <begin position="131"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="domain" description="PDZ" evidence="10">
        <location>
            <begin position="276"/>
            <end position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO18743.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="603" mass="66449" checksum="9F10F905848F99A5" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US44</accession>
    <name>A0A0M2US44_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02394</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000229">
        <property type="protein sequence ID" value="KKO18893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18893">
        <property type="protein sequence ID" value="KKO18893"/>
        <property type="gene ID" value="BROFUL_02394"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0129">CBS domain</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CBS" evidence="2">
        <location>
            <begin position="11"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="2">
        <location>
            <begin position="75"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18893.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="129" mass="14579" checksum="AF1539EA55A2525D" modified="2015-11-11" version="1">MKHLDPISHVMTANMKTVQISQKMSEVLRVLAENQIHHVPVVDGQRLTGMISTTDIIRLNITLSNADEWSIEKVMKKNLVTIEINETVRKAAQLLSDGIFHSLPVIDRDRHLVGIITSTDLIRYLAKLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US56</accession>
    <name>A0A0M2US56_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02623</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18672">
        <property type="protein sequence ID" value="KKO18672"/>
        <property type="gene ID" value="BROFUL_02623"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="72" mass="8215" checksum="525A4E4F5165FDB1" modified="2015-11-11" version="1">MATTYVKDDLIAQVEKLPYDLQLRVLDFVKSLIPKGVTGKNLLQFEGTIPVDDLERMSKAIEECEKVDTSEW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US70</accession>
    <name>A0A0M2US70_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cataboliteactivator (CAMP receptor protein, cAMP-regulatory protein)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">crp_2</name>
        <name evidence="2" type="ORF">BROFUL_02639</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18687.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18687">
        <property type="protein sequence ID" value="KKO18687"/>
        <property type="gene ID" value="BROFUL_02639"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00038">
        <property type="entry name" value="CAP_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018490">
        <property type="entry name" value="cNMP-bd-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000595">
        <property type="entry name" value="cNMP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00027">
        <property type="entry name" value="cNMP_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00100">
        <property type="entry name" value="cNMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51206">
        <property type="entry name" value="SSF51206"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50042">
        <property type="entry name" value="CNMP_BINDING_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cyclic nucleotide-binding" evidence="1">
        <location>
            <begin position="1"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18687.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="195" mass="22039" checksum="F5DBE4E8464D7544" modified="2015-11-11" version="1">MDQFISRTEKIKDGSVILEEGSWAYYAYVLQSGKAKVWRNINNKQVLVGTLKEGDIFGEMSFFGMAKRTASVTADGDVVVGMITKDTFMEALSKLSPEARVKLDKMTQDFFYLSDVYSRLTNCLHEILTIKGRMIDPKLFEKEVEKMPDILRKVVGLMIERFISAMDGSIVLVSQLEEAARSIDSLSTKLIQKCK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US91</accession>
    <name>A0A0M2US91_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02591</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000239">
        <property type="protein sequence ID" value="KKO18712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18712">
        <property type="protein sequence ID" value="KKO18712"/>
        <property type="gene ID" value="BROFUL_02591"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017832">
        <property type="entry name" value="Glyco_trans_2_hopen-assoc_HpnB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03469">
        <property type="entry name" value="HpnB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="176"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="286"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="316"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="346"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="50"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="387" mass="43155" checksum="65CE04F74B1AF4D2" modified="2015-11-11" version="1">MGSLILFIFGIISAITWLVLLCMPKRWRISERWDITDELRERIHPWPTLSVIIPARNESASLPITLPSWLKQDYPASEVILVDDESIDGTAENARKISAQSNCKVQVLDGISTPSGWSGKLWALEQGVRISSGEWLLFTDADIYHNPHLWQGLVAKAIAEQRELVSLMALLDTRGFWARLLIPAFVYFFHFLYPFTEVQDMRSKTSAAAGGCILVSRKALNAIGGIASYCDAWIDDIALAIRIKRAGMPISLSLTKSAISIRPYFGLREIWNMVARNAFAQLHYSWLLLMGTATGLFILFVSPVAGIAASASGKKGMLIPSGIALVSMAFTYFPTIRFFNLNAGRIFSLPVAGLLYLAMTFSSAWNYLLGWREWRGSRKNNANKTIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USD6</accession>
    <name>A0A0M2USD6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pyridine nucleotide-disulfide oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02371</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18978">
        <property type="protein sequence ID" value="KKO18978"/>
        <property type="gene ID" value="BROFUL_02371"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045454">
        <property type="term" value="P:cell redox homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.250.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016156">
        <property type="entry name" value="FAD/NAD-linked_Rdtase_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004099">
        <property type="entry name" value="Pyr_nucl-diS_OxRdtase_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036873">
        <property type="entry name" value="Rhodanese-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02852">
        <property type="entry name" value="Pyr_redox_dim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00581">
        <property type="entry name" value="Rhodanese"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00450">
        <property type="entry name" value="RHOD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52821">
        <property type="entry name" value="SSF52821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55424">
        <property type="entry name" value="SSF55424"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rhodanese" evidence="2">
        <location>
            <begin position="472"/>
            <end position="557"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="557" mass="60097" checksum="405F989913C2147A" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USV5</accession>
    <name>A0A0M2USV5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">2-hydroxyglutaryl-CoA dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02642</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the FldB/FldC dehydratase alpha/beta subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18690">
        <property type="protein sequence ID" value="KKO18690"/>
        <property type="gene ID" value="BROFUL_02642"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010327">
        <property type="entry name" value="FldB/FldC_alpha/beta"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06050">
        <property type="entry name" value="HGD-D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="80"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="258"/>
            <end position="285"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18690.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="447" mass="51847" checksum="D30DEF3E78C3F80A" modified="2015-11-11" version="1">MASIRKYKEWLEPIRRRFSPLMFRELLRFLRVYHFFFRGNKKKELVSLRVQTRVGVKHLYRVYANPKRTVWTTMFVPSEILFAMGLYPFCLEIGAALFAGLGQSSRGLMEAESYGVPTDICTFHRSAIGHTFRDLFPKNILQVATTTLCDNNTKTMKICESVSGKETIVIDVPYEADDYSVQYLAKQLEDFVHRLEEITGRKMERASLEKAIDYANQMREKMLEINALRKDPLCPLPGSRALGFMFPAYLLIGSTLSVEFFSALAAELREKMEESKRKENHTDNKDLIRILWLELKPYFTVDFLTKLEEEQGVKIVFEETNYVYWDKLDPQRPYESLAKKLITSHYNGPLERRIEVTRKLAREYQVDGVVVFSSWGCRRNNAAVPTLKRELNKIGYPLLSLDGDCIDDHNYMPGQFSTRIEGFLEMLRGRKASASLPQREICEAGVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USX5</accession>
    <name>A0A0M2USX5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Malate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_02589</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000239">
        <property type="protein sequence ID" value="KKO18710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18710">
        <property type="protein sequence ID" value="KKO18710"/>
        <property type="gene ID" value="BROFUL_02589"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3215"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004471">
        <property type="term" value="F:malate dehydrogenase (decarboxylating) (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05311">
        <property type="entry name" value="NAD_bind_2_malic_enz"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046346">
        <property type="entry name" value="Aminiacid_DH-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015884">
        <property type="entry name" value="Malic_enzyme_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012301">
        <property type="entry name" value="Malic_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037062">
        <property type="entry name" value="Malic_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012302">
        <property type="entry name" value="Malic_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045213">
        <property type="entry name" value="Malic_NAD-bd_bact_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00390">
        <property type="entry name" value="malic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03949">
        <property type="entry name" value="Malic_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01274">
        <property type="entry name" value="malic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00919">
        <property type="entry name" value="Malic_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53223">
        <property type="entry name" value="SSF53223"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00331">
        <property type="entry name" value="MALIC_ENZYMES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="malic" evidence="5">
        <location>
            <begin position="92"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="domain" description="Malic_M" evidence="4">
        <location>
            <begin position="237"/>
            <end position="460"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM01274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="471" mass="50915" checksum="BE19E4A992E81BD3" modified="2015-11-11" version="1">MRIVENLVTFRLRLKNSPGTLGKALTTIGKSGGSMGNIQIIKADKDFKIRDLAVYVSTDEQVKEIVNTLSALGKDHVEVISVKDKVFELHEKGKISISNRIGITTFEDLSRVYTPGVAKVCKAIQKRPELAREYTIIKNTVAVVTDGTAILGLGDIGPVAGMPVMEGKAMLFKAFGNIDAFPILLNTRDTDEIVKTMVNISSTFGGINLEDISAPRCFEIERRLKEILPVPVFHDDQHGTAVVCLAGLLNALKVVNKTIENISAVISGAGAAGISIAHMLIHAGAKDIVVCDTSGIIYKGRTTNMNLEKEALAQITNQKNERGTIADAMVGKDVFIGVSGPNSITRDMVKTMQKDSIVFAMANPNPEIEPDLIEDIARIVATGRSDYHNQINNVLCFPGLFRGALDSGATTINDTMNMAAAYAIAHAIEEEHLSEDYIIPSVFNEKVHKNVARAVADAAMKTGVARRNIFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT01</accession>
    <name>A0A0M2UT01_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02370</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18977.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18977">
        <property type="protein sequence ID" value="KKO18977"/>
        <property type="gene ID" value="BROFUL_02370"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18977.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="150" mass="16847" checksum="FFF64AB59725BC08" modified="2015-11-11" version="1">MIALTEIALPAWRMSIDLIRIPTEASTSFLASVSCGVFGRGIIAIRCAIRRKISDFQKVVNRIVTGQSCLTRREDERQELVMRETRRFPFLGKPGGKGGVFDGYLPRIYKSLGFLLLKPQPKVMLRNFNVAVVGRRVSSLSIEKVSECLM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT16</accession>
    <name>A0A0M2UT16_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">fn3_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02540</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18760.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18760">
        <property type="protein sequence ID" value="KKO18760"/>
        <property type="gene ID" value="BROFUL_02540"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029413">
        <property type="entry name" value="RG-lyase_II"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14686">
        <property type="entry name" value="fn3_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="fn3_3" evidence="1">
        <location>
            <begin position="155"/>
            <end position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14686"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18760.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="225" mass="24344" checksum="B5EFA5DA8E1B0CBD" modified="2015-11-11" version="1">MDQPAIGAEAYKEIDVKDGGAIAGVVKFDGDIPAGKMLKVDKDEQTCGHENKVSEELVINGESKGIKNAVVSLVEIAAGKKAEVVTATLDQKECLFMPHVLAVSTGASVDLLNSDNVMHNLHSWSIKNPGFNEGVSGGGKMTKKFDLPEVVKITCDVHKWMSSFIVVKANPYFAVTDENGRFRIENVPAGSYKIEAWQEKLGKKTADVTVKSNEEAAVDFVYAKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT55</accession>
    <name>A0A0M2UT55_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Pseudouridine synthase</fullName>
            <ecNumber evidence="3">5.4.99.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_03147</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Responsible for synthesis of pseudouridine from uracil.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>a uridine in RNA = a pseudouridine in RNA</text>
            <dbReference type="Rhea" id="RHEA:48348"/>
            <dbReference type="Rhea" id="RHEA-COMP:12068"/>
            <dbReference type="Rhea" id="RHEA-COMP:12069"/>
            <dbReference type="ChEBI" id="CHEBI:65314"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the pseudouridine synthase RluA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.-" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000288">
        <property type="protein sequence ID" value="KKO18166.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18166">
        <property type="protein sequence ID" value="KKO18166"/>
        <property type="gene ID" value="BROFUL_03147"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3880"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0120159">
        <property type="term" value="F:rRNA pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000455">
        <property type="term" value="P:enzyme-directed rRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd02869">
        <property type="entry name" value="PseudoU_synth_RluA_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006225">
        <property type="entry name" value="PsdUridine_synth_RluC/D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006145">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00849">
        <property type="entry name" value="PseudoU_synth_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01479">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00363">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00005">
        <property type="entry name" value="rluA_subfam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S4" evidence="4">
        <location>
            <begin position="22"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR606225-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU362028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18166.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="334" mass="38466" checksum="CB1DE9240D16AE10" modified="2015-11-11" version="1">MRQAAPQLKEVTFDIKKGFDDKRIDRYLAARLPDYSRTFLQKLIKEGTVLVNGRMVKSSYDIQKGDRISVHVPVLEESRIVPEDIPLCIVYEDDYLMLINKPYDMVIHPAGGHPSGTLVNAVAFHCQNLSQVNGPLKAGIVHRLDRDTSGIMLVIKSDAVHSHIAMQFEKRHIRKEYLAVVEGEMAFDSDEIYLPIGRHKNVRQKMAVRRDTGKEAVSVYEVIERFRGYTLVKIMPKTGRTHQIRVHMRSIGHPVVADFMYSDHESCYLSDLLGKERETGESPIIERQALHAHRIEFYHPIENRKMEFQADLPEDISRLVSSLREIRPYRHASN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT56</accession>
    <name>A0A0M2UT56_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02461</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18800.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18800">
        <property type="protein sequence ID" value="KKO18800"/>
        <property type="gene ID" value="BROFUL_02461"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3058"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="77"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="77"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18800.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="134" mass="15264" checksum="3FDC1C3625430EE4" modified="2015-11-11" version="1">MKMKEGCWSGKKTVGVHIHRYLRSLFLGSIPLLFLFSCGSDRVNVEFQSSREVYDDAKTDPDKLNRELEYDLKEVERQRLQKQRAEEAAAKAKAEAQRKAEAQRGDQKPETEAETEMEMETGEAAEAESSPLQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT57</accession>
    <name>A0A0M2UT57_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02255</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000223">
        <property type="protein sequence ID" value="KKO19032.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19032">
        <property type="protein sequence ID" value="KKO19032"/>
        <property type="gene ID" value="BROFUL_02255"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19032.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="51" mass="5948" checksum="DA170EF308EABFFE" modified="2015-11-11" version="1">MNEMIVSDLDMERILAMAGCACITSHFAWFDLADGVMPYVRFVWMEMYKHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT95</accession>
    <name>A0A0M2UT95_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">CTP synthase</fullName>
            <ecNumber evidence="9">6.3.4.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Cytidine 5'-triphosphate synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">Cytidine triphosphate synthetase</fullName>
            <shortName evidence="9">CTP synthetase</shortName>
            <shortName evidence="9">CTPS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">UTP--ammonia ligase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">pyrG</name>
        <name evidence="12" type="ORF">BROFUL_03104</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>ATP + H2O + L-glutamine + UTP = ADP + CTP + 2 H(+) + L-glutamate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:26426"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.4.2"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>ATP + NH4(+) + UTP = ADP + CTP + 2 H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:16597"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>H2O + L-glutamine = L-glutamate + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:15889"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </reaction>
    </comment>
    <comment type="activity regulation">
        <text evidence="9">Allosterically activated by GTP, when glutamine is the substrate; GTP has no effect on the reaction when ammonia is the substrate. The allosteric effector GTP functions by stabilizing the protein conformation that binds the tetrahedral intermediate(s) formed during glutamine hydrolysis. Inhibited by the product CTP, via allosteric rather than competitive inhibition.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 9">Pyrimidine metabolism; CTP biosynthesis via de novo pathway; CTP from UDP: step 2/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homotetramer.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="9">CTPSs have evolved a hybrid strategy for distinguishing between UTP and CTP. The overlapping regions of the product feedback inhibitory and substrate sites recognize a common feature in both compounds, the triphosphate moiety. To differentiate isosteric substrate and product pyrimidine rings, an additional pocket far from the expected kinase/ligase catalytic site, specifically recognizes the cytosine and ribose portions of the product inhibitor.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the CTP synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.2" evidence="9"/>
    <dbReference type="EMBL" id="LAQJ01000286">
        <property type="protein sequence ID" value="KKO18206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18206">
        <property type="protein sequence ID" value="KKO18206"/>
        <property type="gene ID" value="BROFUL_03104"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3833"/>
    <dbReference type="UniPathway" id="UPA00159">
        <property type="reaction ID" value="UER00277"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003883">
        <property type="term" value="F:CTP synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044210">
        <property type="term" value="P:'de novo' CTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03113">
        <property type="entry name" value="CTPS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01746">
        <property type="entry name" value="GATase1_CTP_Synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01227">
        <property type="entry name" value="PyrG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004468">
        <property type="entry name" value="CTP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017456">
        <property type="entry name" value="CTP_synthase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033828">
        <property type="entry name" value="GATase1_CTP_Synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11550">
        <property type="entry name" value="PTHR11550"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06418">
        <property type="entry name" value="CTP_synth_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00337">
        <property type="entry name" value="PyrG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7 9" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="4 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8 9" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CTP_synth_N" evidence="11">
        <location>
            <begin position="3"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="domain" description="GATase" evidence="10">
        <location>
            <begin position="305"/>
            <end position="526"/>
        </location>
    </feature>
    <feature type="region of interest" description="Amidoligase domain" evidence="9">
        <location>
            <begin position="1"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="region of interest" description="L-glutamine binding" evidence="9">
        <location>
            <begin position="382"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile; for glutamine hydrolysis" evidence="9">
        <location>
            <position position="381"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="507"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="509"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="13"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="14"/>
            <end position="19"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="54"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="140"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="147"/>
            <end position="149"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <note>allosteric inhibitor</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="187"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="223"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="239"/>
            <end position="241"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="354"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="405"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="462"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000314"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF06418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO18206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="531" mass="59656" checksum="E3EA2DE601410D74" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTC5</accession>
    <name>A0A0M2UTC5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NAD-dependent epimerase/dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01973</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19313.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19313">
        <property type="protein sequence ID" value="KKO19313"/>
        <property type="gene ID" value="BROFUL_01973"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016040">
        <property type="entry name" value="NAD(P)-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13460">
        <property type="entry name" value="NAD_binding_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD(P)-bd_dom" evidence="1">
        <location>
            <begin position="7"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19313.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="297" mass="33398" checksum="E251B29F0AAA71CA" modified="2015-11-11" version="1">MKVFLTGSTGFVGKQILHDLLEKKYQVKCIVRQGSEQKIAHHKEVEIVHGDITDPDSLPRKLAGCDVVINLVGIIREFPGKGITFEKLHYEGTAHLVRAAREQGVRRFIQMSALGARRDGKTQYQRTKFRAEECIRSSGLDYTIFRPSIIYGPEDKFVNLFAGMLKTQQFVPVVGNGRYQMQPVSVENVSMGFVKSVEMNDAIGKIFAVGGPEKIEFNQIIDIIGSVLCAPPHKLHIPVFIMNLAAEMLDWLPAFPVTKDQICMLLEGNTCDEKPFFNHFGIKPIEFKQGISKYLTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTD6</accession>
    <name>A0A0M2UTD6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03056</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000284">
        <property type="protein sequence ID" value="KKO18246.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18246">
        <property type="protein sequence ID" value="KKO18246"/>
        <property type="gene ID" value="BROFUL_03056"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3774"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004573">
        <property type="term" value="F:Glc3Man9GlcNAc2 oligosaccharide glucosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009311">
        <property type="term" value="P:oligosaccharide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004888">
        <property type="entry name" value="Glycoside_hydrolase_63"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10412">
        <property type="entry name" value="PTHR10412"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18246.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="490" mass="56676" checksum="2A6556CBB44C5410" modified="2015-11-11" version="1">MDKLPTEAQRLMEANQQKVHWKKWGPYLSERQWGTVREDYSESGDAWNYFPHDHARSRAYRWGEDGLAGISDDNQRLCLALALWNGKDPILKERLFGLTNAEGNHGEDVKEYYFYLDSTPTHSYMKYLYKYPQAAYPYDDIVATNRRRGRHELEYELIDTGVFDQDRYFDVFVEYAKESPEDILIQISVHNRGPEVATVHVLPTLWFRNQWSWVAGSDKPEAFQAEGSTTYSVVAASYPREEPHYLYCEGTPSLLFTENETNTQRLLGVPNRTPYVKDGISNYLVHGQQEAVNPEKKGTKAAAHYRLTVPPGKSHVVRIRLTNVAPAALDQTYGKGFGPFGSHFDDVLKNRRQEADEFYATVIPPSLSADAAKVMRQALAGMLWTKQFYYYDVNQWLGERGSDPFKPKRRAAPRNDHWHHMYNSDILSMPDKWEYPWYAAWDLSFHVLALTLVDPDFGKQQLDIILKDHYLHPSGRFRHTSGTSATSIRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTI7</accession>
    <name>A0A0M2UTI7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">30S ribosomal protein S14 type Z</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpsZ</name>
        <name evidence="5" type="synonym">rpsN</name>
        <name evidence="6" type="ORF">BROFUL_01910</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="5">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the 30S ribosomal subunit. Contacts proteins S3 and S10.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the universal ribosomal protein uS14 family. Zinc-binding uS14 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19383">
        <property type="protein sequence ID" value="KKO19383"/>
        <property type="gene ID" value="BROFUL_01910"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2379"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.830.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01364_B">
        <property type="entry name" value="Ribosomal_S14_2_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001209">
        <property type="entry name" value="Ribosomal_S14"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043140">
        <property type="entry name" value="Ribosomal_S14/S29"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018271">
        <property type="entry name" value="Ribosomal_S14_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023053">
        <property type="entry name" value="Ribosomal_S14_Z"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19836">
        <property type="entry name" value="PTHR19836"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00253">
        <property type="entry name" value="Ribosomal_S14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00527">
        <property type="entry name" value="RIBOSOMAL_S14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="2 5" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="5">
        <location>
            <position position="24"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="27"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="40"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="43"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01364"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="61" mass="7401" checksum="E1A8FE1F87115E15" modified="2015-11-11" version="1">MARKCLIEKSKKDPKYKTRQYNRCKLCGRRRAYFRRFQICRLCFRKLASKGEIPGVKKASW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTK4</accession>
    <name>A0A0M2UTK4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02978</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000281">
        <property type="protein sequence ID" value="KKO18321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18321">
        <property type="protein sequence ID" value="KKO18321"/>
        <property type="gene ID" value="BROFUL_02978"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="185" mass="22136" checksum="C05D76B1B8ED22CA" modified="2015-11-11" version="1">MLVSTSLVFLLIEYLTHLEFLFHLSAIPLEILAGVFIVGKFLERREKREKRRQLLFIKSYLFRSEMLNLFLANFNALKFPALTMTRIKNATLDELKQMRKEADTIEYHSLEAMEPVIMEYVNAEQVWHSFKERAITYNFEDTFQDMIFILNFIYNVKLFKNNNPDKRFIFEAEKRAALMEKVKKC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTL1</accession>
    <name>A0A0M2UTL1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Flagellar hook-associated protein FlgL</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">flgL</name>
        <name evidence="5" type="ORF">BROFUL_02130</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial flagellin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19147">
        <property type="protein sequence ID" value="KKO19147"/>
        <property type="gene ID" value="BROFUL_02130"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009424">
        <property type="term" value="C:bacterial-type flagellum hook"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005198">
        <property type="term" value="F:structural molecule activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013384">
        <property type="entry name" value="Flagell_FlgL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001492">
        <property type="entry name" value="Flagellin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046358">
        <property type="entry name" value="Flagellin_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001029">
        <property type="entry name" value="Flagellin_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42792">
        <property type="entry name" value="PTHR42792"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00700">
        <property type="entry name" value="Flagellin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00669">
        <property type="entry name" value="Flagellin_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02550">
        <property type="entry name" value="flagell_flgL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="5" id="KW-0966">Cell projection</keyword>
    <keyword evidence="5" id="KW-0969">Cilium</keyword>
    <keyword evidence="5" id="KW-0282">Flagellum</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flagellin_N" evidence="3">
        <location>
            <begin position="9"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="domain" description="Flagellin_C" evidence="4">
        <location>
            <begin position="222"/>
            <end position="301"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005709"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="309" mass="34633" checksum="ECF015D1FFF35000" modified="2015-11-11" version="1">MSFRITQESMGRTILSNIGLNLKKMQEIQEKLSTGKQINRPSDNPSGARKILGLKTEELKFQQFAENTEIARERMNYTLNSLENIQNILHKIKELGIQASNDTLGQTERKILASELNELLESVLQFTNTDNDGRYIFAGTKTSTMPFFAMRDSVGRISSVTYAGNNEEINYQIGPNTDIQINMPGGTVFQDKSVFSTLISMRDTLESDTFDSSSFLDLRNTLDTATDVLSTEITNFGAKTNRLELTSQSLENLRITLQELISYTEDADVASLIMDLKNQENILQSSLQTGARVIQLPSSIFSDKLLSKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTU2</accession>
    <name>A0A0M2UTU2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02253</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000223">
        <property type="protein sequence ID" value="KKO19030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19030">
        <property type="protein sequence ID" value="KKO19030"/>
        <property type="gene ID" value="BROFUL_02253"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="43" mass="4607" checksum="36C5050AA14295D5" modified="2015-11-11" version="1">MNEMIVSDLDMERILVMAGCACITSHFAGFDPTGGAMPYVKIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTZ0</accession>
    <name>A0A0M2UTZ0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02251</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19070">
        <property type="protein sequence ID" value="KKO19070"/>
        <property type="gene ID" value="BROFUL_02251"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2810"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.280.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007420">
        <property type="entry name" value="DUF465"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038444">
        <property type="entry name" value="DUF465_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04325">
        <property type="entry name" value="DUF465"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="81" mass="10070" checksum="D410EF8FDACB5602" modified="2015-11-11" version="1">MQYEHHDLVHEFPEYREKIHDLKMTNSHFKRLFDNYHKLDKEIYRIENDIEPASDTTLEDLKKRRLALKDELFHMLQQEKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU23</accession>
    <name>A0A0M2UU23_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02815</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000265">
        <property type="protein sequence ID" value="KKO18491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18491">
        <property type="protein sequence ID" value="KKO18491"/>
        <property type="gene ID" value="BROFUL_02815"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="182" mass="20611" checksum="F49005B48A9E9846" modified="2015-11-11" version="1">MPISTMHRDYEMLPLVDLHAPRAFSSRERTRSVASPDSIIQDLEDAKTMLRLAGLWINLSLENMIDACEKYMVEMRPDNTHVLLSRKADNTVRQKGVRKPHYSHLLAFDNTLVFQAACCLPLKIVAASLDGNPVSGRVLFSAHSDERGGKLVYQFQDTGTEMIVDIQRGESSRAQRYLFRGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU75</accession>
    <name>A0A0M2UU75_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Flagella synthesis protein FlgN</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">flgN</name>
        <name evidence="1" type="ORF">BROFUL_02128</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19145.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19145">
        <property type="protein sequence ID" value="KKO19145"/>
        <property type="gene ID" value="BROFUL_02128"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044780">
        <property type="term" value="P:bacterial-type flagellum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007809">
        <property type="entry name" value="FlgN-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036679">
        <property type="entry name" value="FlgN-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05130">
        <property type="entry name" value="FlgN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140566">
        <property type="entry name" value="SSF140566"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0966">Cell projection</keyword>
    <keyword evidence="1" id="KW-0969">Cilium</keyword>
    <keyword evidence="1" id="KW-0282">Flagellum</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19145.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="166" mass="19519" checksum="913E210811069CB6" modified="2015-11-11" version="1">MNVWLDELVDTLERLSVTYEDLLETAKRKQSSLISGNIEALEMLMYQEKNQVEIAQLLDEKRQNIVKKYCQTHREEENNITLTSLIKEMDNLYRQKICVLLDKLTRLVKQLQEIQQTNATLIHYSLEITDDIIKILCPSAFQYPVYQHTGKKQDNKLSMVLIDTEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUH2</accession>
    <name>A0A0M2UUH2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02663</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000245">
        <property type="protein sequence ID" value="KKO18626.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18626">
        <property type="protein sequence ID" value="KKO18626"/>
        <property type="gene ID" value="BROFUL_02663"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18626.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="31" mass="3644" checksum="E3F2E5C0BC0168CE" modified="2015-11-11" version="1" fragment="single">VVWRMVRLEFGLFGLVSSDESFFSLFDLAFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUI9</accession>
    <name>A0A0M2UUI9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">3-dehydroquinate dehydratase</fullName>
            <shortName evidence="6">3-dehydroquinase</shortName>
            <ecNumber evidence="6">4.2.1.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Type I DHQase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Type I dehydroquinase</fullName>
            <shortName evidence="6">DHQ1</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">aroD</name>
        <name evidence="9" type="ORF">BROFUL_01779</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis-dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>3-dehydroquinate = 3-dehydroshikimate + H2O</text>
            <dbReference type="Rhea" id="RHEA:21096"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16630"/>
            <dbReference type="ChEBI" id="CHEBI:32364"/>
            <dbReference type="EC" id="4.2.1.10"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>NADP(+) + shikimate = 3-dehydroshikimate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:17737"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16630"/>
            <dbReference type="ChEBI" id="CHEBI:36208"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.25"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="6">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 3/7.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 4/7.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the type-I 3-dehydroquinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.10" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000186">
        <property type="protein sequence ID" value="KKO19502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19502">
        <property type="protein sequence ID" value="KKO19502"/>
        <property type="gene ID" value="BROFUL_01779"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2205"/>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00086"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003855">
        <property type="term" value="F:3-dehydroquinate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004764">
        <property type="term" value="F:shikimate 3-dehydrogenase (NADP+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046279">
        <property type="term" value="P:3,4-dihydroxybenzoate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:cellular amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019632">
        <property type="term" value="P:shikimate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00502">
        <property type="entry name" value="DHQase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00214">
        <property type="entry name" value="AroD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046346">
        <property type="entry name" value="Aminiacid_DH-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001381">
        <property type="entry name" value="DHquinase_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011342">
        <property type="entry name" value="Shikimate_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013708">
        <property type="entry name" value="Shikimate_DH-bd_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022893">
        <property type="entry name" value="Shikimate_DH_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006151">
        <property type="entry name" value="Shikm_DH/Glu-tRNA_Rdtase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21089">
        <property type="entry name" value="PTHR21089"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01487">
        <property type="entry name" value="DHquinase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01488">
        <property type="entry name" value="Shikimate_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08501">
        <property type="entry name" value="Shikimate_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53223">
        <property type="entry name" value="SSF53223"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01093">
        <property type="entry name" value="aroD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00507">
        <property type="entry name" value="aroE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="4 6" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0456">Lyase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0704">Schiff base</keyword>
    <feature type="domain" description="Shikimate_dh_N" evidence="8">
        <location>
            <begin position="211"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="domain" description="Shikimate_DH" evidence="7">
        <location>
            <begin position="329"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="region of interest" description="3-dehydroquinate binding" evidence="6">
        <location>
            <begin position="12"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="6">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with substrate" evidence="6">
        <location>
            <position position="124"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="39"/>
        </location>
        <ligand>
            <name>3-dehydroquinate</name>
            <dbReference type="ChEBI" id="CHEBI:32364"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="162"/>
        </location>
        <ligand>
            <name>3-dehydroquinate</name>
            <dbReference type="ChEBI" id="CHEBI:32364"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="183"/>
        </location>
        <ligand>
            <name>3-dehydroquinate</name>
            <dbReference type="ChEBI" id="CHEBI:32364"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="187"/>
        </location>
        <ligand>
            <name>3-dehydroquinate</name>
            <dbReference type="ChEBI" id="CHEBI:32364"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001648"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004871"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01488"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF08501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19502.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="449" mass="50257" checksum="CE50307FD8C208B5" modified="2015-11-11" version="1">MDEASKVADIIEVRLDYLKNPDLKCILERRTKPVIITNRPVREGGRFDGSEEDRIAVLQLAIRLHADYVDIEHDSIHNLWRDTAHRIPANKTKIIVSYHNFRETPDNLISLYQRLSQSDADIIKIVTYANTITDNVKICRLLRQTSGQMISFCMGEYGMISRILYKRFGSYLTFASLRKGKESAPGQVSIQDFLATYQAQRQDKDTEIYGLIGNPVSHSISPLIHNTLFREMNFNKIYVPFQVDNIGDFIRIFRELEVQGYSVTIPHKESVIPHLDAIDPLAKKIGAVNTIVNKGGRLTGFNTDCQAAMQALEETQQATGTGTGNDPFMGRHVTLLGAGGAARAIAFGLRERGAHVTIVNRNHERAQALARDVGCLSGEFGDLQEIKTDILIHATPVGMFPAVNETPVDKDQLTPNMVVFDTIYNPLETRLLREAKAQAVKPPVVCRCL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUL2</accession>
    <name>A0A0M2UUL2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">UDP-3-O-acylglucosamine N-acyltransferase</fullName>
            <ecNumber evidence="6">2.3.1.191</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">lpxD</name>
        <name evidence="8" type="ORF">BROFUL_01970</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>a (3R)-hydroxyacyl-[ACP] + a UDP-3-O-[(3R)-3-hydroxyacyl]-alpha-D-glucosamine = a UDP-2-N,3-O-bis[(3R)-3-hydroxyacyl]-alpha-D-glucosamine + H(+) + holo-[ACP]</text>
            <dbReference type="Rhea" id="RHEA:53836"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="Rhea" id="RHEA-COMP:9945"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="ChEBI" id="CHEBI:78827"/>
            <dbReference type="ChEBI" id="CHEBI:137740"/>
            <dbReference type="ChEBI" id="CHEBI:137748"/>
            <dbReference type="EC" id="2.3.1.191"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="6">Bacterial outer membrane biogenesis; LPS lipid A biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homotrimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the transferase hexapeptide repeat family. LpxD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.191" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19310.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19310">
        <property type="protein sequence ID" value="KKO19310"/>
        <property type="gene ID" value="BROFUL_01970"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2453"/>
    <dbReference type="UniPathway" id="UPA00973"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016410">
        <property type="term" value="F:N-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009245">
        <property type="term" value="P:lipid A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03352">
        <property type="entry name" value="LbH_LpxD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00523">
        <property type="entry name" value="LpxD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018357">
        <property type="entry name" value="Hexapep_transf_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007691">
        <property type="entry name" value="LpxD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020573">
        <property type="entry name" value="UDP_GlcNAc_AcTrfase_non-rep"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43378">
        <property type="entry name" value="PTHR43378"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00132">
        <property type="entry name" value="Hexapep"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04613">
        <property type="entry name" value="LpxD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01853">
        <property type="entry name" value="lipid_A_lpxD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00101">
        <property type="entry name" value="HEXAPEP_TRANSFERASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="2 6" id="KW-0441">Lipid A biosynthesis</keyword>
    <keyword evidence="1 6" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="5 6" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0677">Repeat</keyword>
    <keyword evidence="3 6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="LpxD" evidence="7">
        <location>
            <begin position="24"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="6">
        <location>
            <position position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00523"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF04613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19310.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="336" mass="35741" checksum="0846E389F3FBA1DF" modified="2015-11-11" version="1">MKFTLSEIQSLIGGKIIGNENTCIMGIASVATAKEGDITFVRNDSLVQQALTSCAAAFVIHRETPQLRKPQIVVENPNLSFTKLLGIVAQERYIRPAGMHPTAIISKEAVVGEGVSAGAHVVVEDGVTIGNHVTLYPNTFIGRGSRIGDNSVIYANVSILENTIIGKRAIIHCNSVIGDEGFGYLQVEKTHVKIPQVGIVEIGDDVEIGSMVTICRAALDKTIVGNGVKIDNHSHIAHNVVIGDNSMLIAYAKIAGSAKIGRNVLIAEDVGVTDHATIGDGCMIGGGSNVYKSLEAGSVVWGSPAKPITEEKRIQVLIKKLPEMYSAMKRLVKASR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUY1</accession>
    <name>A0A0M2UUY1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03026</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18299.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18299">
        <property type="protein sequence ID" value="KKO18299"/>
        <property type="gene ID" value="BROFUL_03026"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004042">
        <property type="term" value="F:acetyl-CoA:L-glutamate N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010167">
        <property type="entry name" value="NH2A_AcTrfase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30602">
        <property type="entry name" value="PTHR30602"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="2">
        <location>
            <begin position="1"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18299.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="159" mass="18246" checksum="DCF6A39A0369C779" modified="2015-11-11" version="1">MLRKATIADVEKIYKLINDFAAKNVMLPRSLSELYENIRDFFVFIENDTLIGCAALHIFWKDLAEIKSVAVMESQQRKGVGKKLAMACIREAKKLQIAKMFVLTYVPEFFEKCGFHKVEKESLPHKIWSECVKCHKFPDCGEIPLIYELNKNHGHGAPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV02</accession>
    <name>A0A0M2UV02_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">T-cell receptor interacting molecule (TRIM)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">trim</name>
        <name evidence="1" type="ORF">BROFUL_02477</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18816">
        <property type="protein sequence ID" value="KKO18816"/>
        <property type="gene ID" value="BROFUL_02477"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="170" mass="19772" checksum="AC54D8C48DE81A82" modified="2015-11-11" version="1">MKVPREVGKHTRNKVYSENDPYLPPKGKGLVGIAICKDCTSVYHNKKWFLDAKMYKEKKGLKNVNWVTCPACKKTKENVPNGIVKLKGDFLKQHKEEILNLIHNEDDRSKKYNPLKRIMKLQDKGGEVEVHTTSAKLAQRIGSILFKAYSGEVEYKKHENAKFMRVEWRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVB2</accession>
    <name>A0A0M2UVB2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01533</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000158">
        <property type="protein sequence ID" value="KKO19757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19757">
        <property type="protein sequence ID" value="KKO19757"/>
        <property type="gene ID" value="BROFUL_01533"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="990" mass="110666" checksum="F03668B97D7CE85A" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVB3</accession>
    <name>A0A0M2UVB3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Secretion protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02853</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000269">
        <property type="protein sequence ID" value="KKO18444.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18444">
        <property type="protein sequence ID" value="KKO18444"/>
        <property type="gene ID" value="BROFUL_02853"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3530"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032317">
        <property type="entry name" value="HlyD_D23"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16576">
        <property type="entry name" value="HlyD_D23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="domain" description="HlyD_D23" evidence="3">
        <location>
            <begin position="49"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="151"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18444.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="344" mass="38227" checksum="93CE615CD6EF57DC" modified="2015-11-11" version="1">MSKPSYKKHLIWIIPIVVVAGGAFFGYKYWKAKKYALPEGIASGNGRIESKLVDVAAKEPLRVKEVLADEGDRVEPGQVLVRLDTITLDAELAKAKANVAATQERLAIANAAIIRRKSEIELAKIEVERTRKLVEERAGTQREYDVRRTELETTTAALAEEEARLQTAKQEVEVAQANVATIQTRIDDATLTSPVRGRVLYRLAEPGEVLASGGKALTLVNLKDIYMEIFLPAQQAAKLKVGAEGRITLDHAPGRAAAGYVSFVSPEAQFTPKQVETRSERDKLMFRVKIQLPEELAVSYMDYIKTGVRGVGYVRVDESASWPNWLQNLVTAPPKMYEQPREVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVC7</accession>
    <name>A0A0M2UVC7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Glycosyltransferase fused to TPR-repeat domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">waaE_2</name>
        <name evidence="4" type="ORF">BROFUL_01498</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000155">
        <property type="protein sequence ID" value="KKO19772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19772">
        <property type="protein sequence ID" value="KKO19772"/>
        <property type="gene ID" value="BROFUL_01498"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1853"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001440">
        <property type="entry name" value="TPR_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00515">
        <property type="entry name" value="TPR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0802">TPR repeat</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="3">
        <location>
            <begin position="26"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="339"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="407"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="509"/>
            <end position="542"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="544"/>
            <end position="577"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="591" mass="67436" checksum="4651103E585C3154" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVI5</accession>
    <name>A0A0M2UVI5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative cytochrome b6</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01218</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000132">
        <property type="protein sequence ID" value="KKO20068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20068">
        <property type="protein sequence ID" value="KKO20068"/>
        <property type="gene ID" value="BROFUL_01218"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022904">
        <property type="term" value="P:respiratory electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.810.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005797">
        <property type="entry name" value="Cyt_b/b6_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027387">
        <property type="entry name" value="Cytb/b6-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016174">
        <property type="entry name" value="Di-haem_cyt_TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00033">
        <property type="entry name" value="Cytochrome_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81342">
        <property type="entry name" value="SSF81342"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51002">
        <property type="entry name" value="CYTB_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="55"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="110"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="143"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="180"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="domain" description="CYTB_NTER" evidence="2">
        <location>
            <begin position="29"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="211" mass="23836" checksum="7E80014535D3AA31" modified="2015-11-11" version="1" fragment="single">LYSNTITRAPREYILKIQNMSAKKTEAFICDTENKGFLMEFIESNITKRLIPRGLSWFGCMGGLSLVAFMIQLGTGIFLMFSFIPSAAEAVSSIQRVSHSVPYGWLIHRIHAVGPHVMIGMVISHMLRILFKGIYRHPRELHWVSGACLLILTFIMYYTGYLLSAGNHSNHSVLSMTSVYALHIAGIPLTMGLFMGMHFFMVRRTGIYEPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVP6</accession>
    <name>A0A0M2UVP6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01362</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000141">
        <property type="protein sequence ID" value="KKO19912.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19912">
        <property type="protein sequence ID" value="KKO19912"/>
        <property type="gene ID" value="BROFUL_01362"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19912.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="266" mass="29389" checksum="9CC507D2E65D4E43" modified="2015-11-11" version="1">MWKCLLLITWCTLVGCIVPAQVFALRPFVTTDADVVETNQIEIELGLFGLHERKQAGTDELTLEVPGIRFNYGLPWDSEIVLETVGELIDNEYAGSLGIKEKQFASTAGFYKKVWWRAESGSWTPNFATETGAVFPTEKGTSGLGCEGTGIFSWYLKNLTCHMTLGGGTTTEEFGDGRRGLFIYGVILDVPVPQYKKLHLVAEYSGEKVESSILDHQILGGFVWEGPKEIEYDIAGFTGLNRESVDWGMTMGITFFIGKTEKDGGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVR8</accession>
    <name>A0A0M2UVR8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Glyco_trans_2-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02216</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000221">
        <property type="protein sequence ID" value="KKO19081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19081">
        <property type="protein sequence ID" value="KKO19081"/>
        <property type="gene ID" value="BROFUL_02216"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="233"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="266"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="300"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="4"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="337" mass="37698" checksum="8EF5CBA198CF27A7" modified="2015-11-11" version="1">MKFSILIPAYNEEQAISSCLNSLTSLTYDNKEIFVIDDASTDRTTQIVERFLHNGVVLVRCEKNGGRAAALNFGLQKATGDVIITTDADTVVPADWLQRFKPHFEEQGVVAVGGAYRAGNRDKTLANASSVLDYLLNGIGKKSLVPNKLSGVNSAIRRDALVDLGGFNENAWWCEDSELGWKLSERARIVYDPSNVVSTQYPDTWSGIWRRKFYWGYAMGLKFHGQLPLNLRLWIRPVLFIVLFACLFASLATIPYGMRVYFVPGSIFLLLLSILTVVYVPLGIIVMARMGDSTGISLKTLAVLAVLPLVREFAYVYGMWLGYYRGRLSSIRPSWKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW77</accession>
    <name>A0A0M2UW77_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Cytochrome c domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02534</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18754.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18754">
        <property type="protein sequence ID" value="KKO18754"/>
        <property type="gene ID" value="BROFUL_02534"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13442">
        <property type="entry name" value="Cytochrome_CBB3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0349">Heme</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644043" description="Cytochrome c domain-containing protein" evidence="5">
        <location>
            <begin position="30"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="6">
        <location>
            <begin position="30"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18754.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="189" mass="20847" checksum="BEE0FF0B799D582A" modified="2015-11-11" version="1">MGYFMCWKKFAVNTALVFGVIGWFATANGAEVSPRDQIFLLSPKKTFDYYCSPCHGLKGKGDGTFFTIDLKPKPRNFTDLDYMKKRTDDQLIKSITDGSKSVDKSNLCPPWGKTLTDKKIKELVAYIRGLATQESAAPVAVAKGPVSVDEKESPVKAVMRWGFIAVITIALASGAISEWKKLRNESPKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWA5</accession>
    <name>A0A0M2UWA5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01419</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000146">
        <property type="protein sequence ID" value="KKO19860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19860">
        <property type="protein sequence ID" value="KKO19860"/>
        <property type="gene ID" value="BROFUL_01419"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1751"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007438">
        <property type="entry name" value="DUF488"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04343">
        <property type="entry name" value="DUF488"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="64"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="114" mass="13686" checksum="E42FFF9881F4A94B" modified="2015-11-11" version="1">MIGIKRVYEKPDNGDGIRVLIDRLWPRGLKKEDAAIDYWMKEIAPSDTLRKWFAHKEERWQEFKSRYRKELKDKSELLKQLIDLEKKKKVTLLYAAKDEARNNAEVLLEVLKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWB4</accession>
    <name>A0A0M2UWB4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 2">Adenylyl-sulfate kinase</fullName>
            <ecNumber evidence="1 2">2.7.1.25</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">APS kinase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">ATP adenosine-5'-phosphosulfate 3'-phosphotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Adenosine-5'-phosphosulfate kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">cysC</name>
        <name evidence="3" type="ORF">BROFUL_01429</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 2">Catalyzes the synthesis of activated sulfate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 2">
            <text>adenosine 5'-phosphosulfate + ATP = 3'-phosphoadenylyl sulfate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:24152"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58243"/>
            <dbReference type="ChEBI" id="CHEBI:58339"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.25"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 2">Sulfur metabolism; hydrogen sulfide biosynthesis; sulfite from sulfate: step 2/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the APS kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.25" evidence="1 2"/>
    <dbReference type="EMBL" id="LAQJ01000146">
        <property type="protein sequence ID" value="KKO19870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19870">
        <property type="protein sequence ID" value="KKO19870"/>
        <property type="gene ID" value="BROFUL_01429"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1761"/>
    <dbReference type="UniPathway" id="UPA00140">
        <property type="reaction ID" value="UER00205"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004020">
        <property type="term" value="F:adenylylsulfate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070814">
        <property type="term" value="P:hydrogen sulfide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000103">
        <property type="term" value="P:sulfate assimilation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02027">
        <property type="entry name" value="APSK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00065">
        <property type="entry name" value="Adenylyl_sulf_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002891">
        <property type="entry name" value="APS_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00455">
        <property type="entry name" value="apsK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 2 3" id="KW-0418">Kinase</keyword>
    <keyword evidence="1 2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0808">Transferase</keyword>
    <feature type="active site" description="Phosphoserine intermediate" evidence="1">
        <location>
            <position position="110"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="36"/>
            <end position="43"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU004347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="203" mass="23006" checksum="0ED3AEA2EC19D480" modified="2015-11-11" version="1">MTVQKATNIKWHHGKITKDDRVKLMKQKGVTIWLTGLSGSGKSTIAVELEHALLENKHLAYILDGDNIRHGLNKNLGFSPEDRTENIRRIGEVAKLFTDANMIAITAFISPYRQDRDNVRKLLKGGEFIEIYIQCPLEVCEQRDTKGLYKKARAGEVKEFTGISAPYEEPLHPELTVDTSKMTVDESTRAILNYLEAKGYVKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWI5</accession>
    <name>A0A0M2UWI5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">N-6 DNA Methylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01040</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20192">
        <property type="protein sequence ID" value="KKO20192"/>
        <property type="gene ID" value="BROFUL_01040"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1302"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008170">
        <property type="term" value="F:N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006306">
        <property type="term" value="P:DNA methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003356">
        <property type="entry name" value="DNA_methylase_A-5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02384">
        <property type="entry name" value="N6_Mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N6_Mtase" evidence="1">
        <location>
            <begin position="69"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20192.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="603" mass="69811" checksum="D7EA4FCE5DEF104D" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWP3</accession>
    <name>A0A0M2UWP3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Macro domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01264</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO19995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19995">
        <property type="protein sequence ID" value="KKO19995"/>
        <property type="gene ID" value="BROFUL_01264"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1562"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002589">
        <property type="entry name" value="Macro_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043472">
        <property type="entry name" value="Macro_dom-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01661">
        <property type="entry name" value="Macro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00506">
        <property type="entry name" value="A1pp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52949">
        <property type="entry name" value="SSF52949"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51154">
        <property type="entry name" value="MACRO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Macro" evidence="1">
        <location>
            <begin position="6"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19995.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="186" mass="20226" checksum="BB15F8AFCFC438D5" modified="2015-11-11" version="1">MQVFQDNKMIQITINKAVLELTEGDITEQETDAIVNAANSSLLGGGGVDGAIHRAGGHSILEECKKIGGCPTGEARITTGGNLKARYVIHTVGPVYHDGKRNEPELLANTYKNSLILASQYNLRSVAFPSISTGAYGFPMNEAAVIALKTVMAYLKTHTDIRMVRFVLFNLKAYQIYEDSLKAFMG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWP4</accession>
    <name>A0A0M2UWP4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 6 9">50S ribosomal protein L22</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rplV</name>
        <name evidence="10" type="ORF">BROFUL_01918</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.</text>
    </comment>
    <comment type="function">
        <text evidence="5">This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.</text>
    </comment>
    <comment type="function">
        <text evidence="6 9">This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6 8">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the universal ribosomal protein uL22 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19391.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19391">
        <property type="protein sequence ID" value="KKO19391"/>
        <property type="gene ID" value="BROFUL_01918"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2387"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00336">
        <property type="entry name" value="Ribosomal_L22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01331_B">
        <property type="entry name" value="Ribosomal_L22_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001063">
        <property type="entry name" value="Ribosomal_L22"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036394">
        <property type="entry name" value="Ribosomal_L22/L17_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005727">
        <property type="entry name" value="Ribosomal_L22_bac/chlpt-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13501">
        <property type="entry name" value="PTHR13501"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00237">
        <property type="entry name" value="Ribosomal_L22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54843">
        <property type="entry name" value="SSF54843"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01044">
        <property type="entry name" value="rplV_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 6 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="6 8" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="6 8" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009451"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00025084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01331"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU004008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19391.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="112" mass="12832" checksum="B69C3DFEAEE73233" modified="2015-11-11" version="1">MAMEFRSSYRYARISPRKARYVIDLVRGKSVNDALRILRVTHKRSSYMIDKVIRAAIAAASENLNVDIDSLYVAQALVDAGPTRRWQRTRPRGMSARILKRTSHITVVLSEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWR1</accession>
    <name>A0A0M2UWR1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00981</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000118">
        <property type="protein sequence ID" value="KKO20272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20272">
        <property type="protein sequence ID" value="KKO20272"/>
        <property type="gene ID" value="BROFUL_00981"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="47" mass="5087" checksum="ED0A7D99C5BCD685" modified="2015-11-11" version="1">MGVNPYTDGITRNKAEKRQNVLAIGVFSLPGSLRDACNADALRQLPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWV3</accession>
    <name>A0A0M2UWV3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cob(I)alamin adenosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00954</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000116">
        <property type="protein sequence ID" value="KKO20322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20322">
        <property type="protein sequence ID" value="KKO20322"/>
        <property type="gene ID" value="BROFUL_00954"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1201"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008817">
        <property type="term" value="F:cob(I)yrinic acid a,c-diamide adenosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00561">
        <property type="entry name" value="CobA_CobO_BtuR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003724">
        <property type="entry name" value="CblAdoTrfase_CobA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02572">
        <property type="entry name" value="CobA_CobO_BtuR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015617">
        <property type="entry name" value="Adensltrnsf_CobA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00708">
        <property type="entry name" value="cobA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="175" mass="19772" checksum="BBF29CE80170C3D0" modified="2015-11-11" version="1">MSEGLILVNTGEGKGKTTAALGLGLRAAGHGMKVLMLQFFKGPWPTGECTAVKRLEPDFKIIPLGQGFIKTRKEEHTEATRENARTSWDYAKQEIFSDLYNVIILDEINNMIHHGLISVEEVISVLKERPKRLTVILTGRNAHEKVMEMADMVTEMREIKHHYQKGIKAQKGIEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXB7</accession>
    <name>A0A0M2UXB7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_01060</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the YajC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20210">
        <property type="protein sequence ID" value="KKO20210"/>
        <property type="gene ID" value="BROFUL_01060"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003849">
        <property type="entry name" value="Preprotein_translocase_YajC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33909">
        <property type="entry name" value="PTHR33909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02699">
        <property type="entry name" value="YajC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01853">
        <property type="entry name" value="YAJCTRNLCASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01323">
        <property type="entry name" value="YajC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00739">
        <property type="entry name" value="yajC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="20"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="122" mass="13735" checksum="B40C5D72385A3A70" modified="2015-11-11" version="1">MFFLLQAAGKQSSPGGMLSMLLPFILMFVVMYFLILRPQKRKEKERKALLARVKKNDRVVTAGGIHGLVTSVREHEVILRIDDAKDIKIKVDRSAIVTVAEVSHDDETEETNVSLQGNKETK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXD9</accession>
    <name>A0A0M2UXD9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="15">Excinuclease ABC subunit A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">BROFUL_01661</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="13">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19626.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19626">
        <property type="protein sequence ID" value="KKO19626"/>
        <property type="gene ID" value="BROFUL_01661"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2051"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009380">
        <property type="term" value="C:excinuclease repair complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006289">
        <property type="term" value="P:nucleotide-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004602">
        <property type="entry name" value="UvrA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041552">
        <property type="entry name" value="UvrA_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041102">
        <property type="entry name" value="UvrA_inter"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17755">
        <property type="entry name" value="UvrA_DNA-bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17760">
        <property type="entry name" value="UvrA_inter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00630">
        <property type="entry name" value="uvra"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9 13" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6" id="KW-0228">DNA excision</keyword>
    <keyword evidence="12" id="KW-0234">DNA repair</keyword>
    <keyword evidence="11" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10" id="KW-0267">Excision nuclease</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 13" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <keyword evidence="7" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="ABC transporter" evidence="14">
        <location>
            <begin position="159"/>
            <end position="437"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="14">
        <location>
            <begin position="457"/>
            <end position="786"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <begin position="490"/>
            <end position="497"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KKO19626.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="789" mass="88331" checksum="BAB9ECF9DDA62A84" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXE6</accession>
    <name>A0A0M2UXE6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Flagellar hook protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">flgE_2</name>
        <name evidence="5" type="ORF">BROFUL_02122</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Bacterial flagellum basal body</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the flagella basal body rod proteins family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19139.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19139">
        <property type="protein sequence ID" value="KKO19139"/>
        <property type="gene ID" value="BROFUL_02122"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2648"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030694">
        <property type="term" value="C:bacterial-type flagellum basal body, rod"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001444">
        <property type="entry name" value="Flag_bb_rod_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020013">
        <property type="entry name" value="Flagellar_FlgE/F/G"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010930">
        <property type="entry name" value="Flg_bb/hook_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037925">
        <property type="entry name" value="FlgE/F/G-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012836">
        <property type="entry name" value="FlgF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00460">
        <property type="entry name" value="Flg_bb_rod"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06429">
        <property type="entry name" value="Flg_bbr_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117143">
        <property type="entry name" value="SSF117143"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03506">
        <property type="entry name" value="FlgEFG_subfam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02490">
        <property type="entry name" value="flgF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="5" id="KW-0966">Cell projection</keyword>
    <keyword evidence="5" id="KW-0969">Cilium</keyword>
    <keyword evidence="5" id="KW-0282">Flagellum</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flg_bb_rod" evidence="3">
        <location>
            <begin position="5"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="domain" description="Flg_bbr_C" evidence="4">
        <location>
            <begin position="169"/>
            <end position="241"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF06429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19139.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="243" mass="26212" checksum="1A06F3E4565797D4" modified="2015-11-11" version="1">MIVGLYTGASSMISQGDYQAVIARNLANINTVGYKKNVAVFQSYISQSSDKDMATASHGVGSSLGTIATDFSQGTLEYTGNDLDISIKGEGFFVVKADTGISYTRKGQFMLSRDMRIITPEGLPLLGHEGEIQIPQNTKSITVKEDGGISADGKEIGKIKIAAVSDLTALEPIGGCAYKLSDKVPQPKDSTDFKIAQRYLERSNVNAIDEMVNMISNMRGYQVGHKVTDSIDETLKKLIKLVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXG9</accession>
    <name>A0A0M2UXG9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00495</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000068">
        <property type="protein sequence ID" value="KKO20778.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20778">
        <property type="protein sequence ID" value="KKO20778"/>
        <property type="gene ID" value="BROFUL_00495"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="SSF51126"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="367"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20778.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="367" mass="41089" checksum="151EB6EE82CC573C" modified="2015-11-11" version="1" fragment="single">MLLSRISKIFKKPYFSLSTIFISWAVLASTLLLSISEKCFGATYYVATNGNDQNSGSLSSPWRTIETSIAKLRPGDTLYLRGGTYYESQIAINVSGTPSNRILIQNYSNEVPTIDGGYMEFREILNSDWELYDSTRGIYRSVRTYSNAVSVDGYFGSQNGNYRLVPYARYSNLSSSNENYTRSGSIYIGPGIFWNSTNERIYIRLKPSSQAISMGYNIPSNMDPRSVVMYIFSSHEVVTFGEGCSYVDMVGINLRYQNNALEFRNGSHHISITNSSITCGKTAIYTHNNVHDLVFDGISVNDNIPPWIAYSDVKIGNCPGGSFQGGPLNFQNLANNIEVRNCLFRKTWDGIVAGNAFNLHIHHNTFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXH1</accession>
    <name>A0A0M2UXH1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_00685</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20567.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20567">
        <property type="protein sequence ID" value="KKO20567"/>
        <property type="gene ID" value="BROFUL_00685"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.872"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019867">
        <property type="term" value="C:outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071709">
        <property type="term" value="P:membrane assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000184">
        <property type="entry name" value="Bac_surfAg_D15"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010827">
        <property type="entry name" value="BamA/TamA_POTRA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039910">
        <property type="entry name" value="D15-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023707">
        <property type="entry name" value="OM_assembly_BamA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034746">
        <property type="entry name" value="POTRA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12815">
        <property type="entry name" value="PTHR12815"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12815:SF23">
        <property type="entry name" value="PTHR12815:SF23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01103">
        <property type="entry name" value="Omp85"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07244">
        <property type="entry name" value="POTRA"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006076">
        <property type="entry name" value="OM_assembly_OMP85"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03303">
        <property type="entry name" value="OM_YaeT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51779">
        <property type="entry name" value="POTRA"/>
        <property type="match status" value="5"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1134">Transmembrane beta strand</keyword>
    <feature type="domain" description="POTRA" evidence="5">
        <location>
            <begin position="41"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="domain" description="POTRA" evidence="5">
        <location>
            <begin position="113"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="domain" description="POTRA" evidence="5">
        <location>
            <begin position="192"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="domain" description="POTRA" evidence="5">
        <location>
            <begin position="281"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="domain" description="POTRA" evidence="5">
        <location>
            <begin position="362"/>
            <end position="440"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20567.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="794" mass="89862" checksum="14DE2D3EFB7C2721" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXM3</accession>
    <name>A0A0M2UXM3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Radical SAM core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_00957</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000116">
        <property type="protein sequence ID" value="KKO20325.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20325">
        <property type="protein sequence ID" value="KKO20325"/>
        <property type="gene ID" value="BROFUL_00957"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="5">
        <location>
            <begin position="50"/>
            <end position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20325.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="353" mass="41352" checksum="03A59CF9EFEBCE5D" modified="2015-11-11" version="1">MIKTLENKKTGPKRTFRDKIFDYSCQKIGKQRTKTFFKLYDLARFDLFGKPKGAIGSIDITNRCNLRCKHCYFYAHDYEKQPELTDDEWIEKLESLKETDFPFYQCSWVGGEPLLRKDLVERGMKYFKSNLIATNGTIELPNWPDVNFYISVDGRKEMHDAIRGKGCYDKILKNASRPDLKIHVSMVVNKMNYQDIEYFIEEWKDRGVKGCLFQIHTPVKGLQNDDLWPGWQLRDEILDTLLKLKEEKYGDFIGVPGLVLKLMKSDKCKEITRNCIFKKVAFCFDPQGQIKKPCMMGPQADCLRCGCVLPFHMWALEDKWLMARELLISLRRKKVKKNPAISSQPERVGKEIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXN8</accession>
    <name>A0A0M2UXN8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00938</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000115">
        <property type="protein sequence ID" value="KKO20340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20340">
        <property type="protein sequence ID" value="KKO20340"/>
        <property type="gene ID" value="BROFUL_00938"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1185"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019614">
        <property type="entry name" value="SAM-dep_methyl-trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10672">
        <property type="entry name" value="Methyltrans_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltrans_SAM" evidence="4">
        <location>
            <begin position="35"/>
            <end position="260"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF10672"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="314" mass="35812" checksum="8BE1A46BCA820E62" modified="2015-11-11" version="1">MSSYKSIIQKAWALRKKYVNLAGTNAYRLINSYGDGLPAVTIDVYDKNILIQYFKSYEQQRKEGIYHALHELLTPETITEKIRLKGEDVKTDLICGQKIPENFVALENDISFAISFLEGGGTGLFLDQRDNRKKVQLLAKDREVLNCFCYTSSFSVYASLGGAARTINVDLSKKAIEWSKRNFFLNHLDANNHEFIVGDVWDWTKLFQKKGRTFDMIILDPPSFSTSKTAVFAVEKDFPQLLGRGLNLLREDGILIFSTNLAKMNFSKLFQLLPKIKNFTSKPYKLMGVSSQGLDFPIDGIHLEEPYLKFIMLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXR7</accession>
    <name>A0A0M2UXR7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02020</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000206">
        <property type="protein sequence ID" value="KKO19264.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19264">
        <property type="protein sequence ID" value="KKO19264"/>
        <property type="gene ID" value="BROFUL_02020"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19264.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="58" mass="6015" checksum="66695F5DA51525CC" modified="2015-11-11" version="1">MLKKFGYSLLVVGALVVGVGAVSSALVGTVIANEAKCDKCGHTATEGKDCKCECHHKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXU9</accession>
    <name>A0A0M2UXU9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">Cell shape-determining protein MreC</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4 5">Cell shape protein MreC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_00605</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Involved in formation and maintenance of cell shape.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the MreC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000083">
        <property type="protein sequence ID" value="KKO20677.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20677">
        <property type="protein sequence ID" value="KKO20677"/>
        <property type="gene ID" value="BROFUL_00605"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.350">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042177">
        <property type="entry name" value="Cell/Rod_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042175">
        <property type="entry name" value="Cell/Rod_MreC_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007221">
        <property type="entry name" value="MreC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34138">
        <property type="entry name" value="PTHR34138"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04085">
        <property type="entry name" value="MreC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF038471">
        <property type="entry name" value="MreC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00219">
        <property type="entry name" value="mreC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0133">Cell shape</keyword>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="79"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00032089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR038471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20677.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="278" mass="30736" checksum="546C2E5D96EC62B5" modified="2015-11-11" version="1">MRTSTPSFSNLIKHPLATIITLFVISLALLFLPPNVSCRIKMTCASPMRPFQWATCFCSNKASVFLDKVISAFHDAHGKKHLEEQVMRYKNKLVEQQDLLFKLQNKLHTLSKFRAENTTTKKMPVPADIIGYDASNFRKSITINVGSKQGVKPNDIVVADNALVGKITAVNGRNSVVQLITDPAIRIPGRVVQTREQVIVEGNATAFCRLKYAPRWAKLKKGDVIVTSDIGGLYPPSLPIATVVEHEMKSGALFQSVKALPRVNISKIESVLVLVNES</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY04</accession>
    <name>A0A0M2UY04_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">GIY-YIG domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01948</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000199">
        <property type="protein sequence ID" value="KKO19349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19349">
        <property type="protein sequence ID" value="KKO19349"/>
        <property type="gene ID" value="BROFUL_01948"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2426"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000305">
        <property type="entry name" value="GIY-YIG_endonuc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035901">
        <property type="entry name" value="GIY-YIG_endonuc_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01541">
        <property type="entry name" value="GIY-YIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82771">
        <property type="entry name" value="SSF82771"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50164">
        <property type="entry name" value="GIY_YIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GIY-YIG" evidence="1">
        <location>
            <begin position="1"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="86" mass="10140" checksum="18010CD8A4728804" modified="2015-11-11" version="1">MTNKNNTVLYTGVTNDLKRRVYVHKEKRVEGFTKKYNVTKLVYYELFRDVKNAIFREKQIKGGSMAKKLELINGMNAGWKDLYDCL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY47</accession>
    <name>A0A0M2UY47_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">Phenylalanine--tRNA ligase alpha subunit</fullName>
            <ecNumber evidence="13">6.1.1.20</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">Phenylalanyl-tRNA synthetase alpha subunit</fullName>
            <shortName evidence="13">PheRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">pheS</name>
        <name evidence="15" type="ORF">BROFUL_01399</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 13">
            <text>ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + H(+) + L-phenylalanyl-tRNA(Phe)</text>
            <dbReference type="Rhea" id="RHEA:19413"/>
            <dbReference type="Rhea" id="RHEA-COMP:9668"/>
            <dbReference type="Rhea" id="RHEA-COMP:9699"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58095"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78531"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="13">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="13">Binds 2 magnesium ions per tetramer.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 13">Tetramer of two alpha and two beta subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 13">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 13">Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.20" evidence="13"/>
    <dbReference type="EMBL" id="LAQJ01000145">
        <property type="protein sequence ID" value="KKO19886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19886">
        <property type="protein sequence ID" value="KKO19886"/>
        <property type="gene ID" value="BROFUL_01399"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1725"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004826">
        <property type="term" value="F:phenylalanine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006432">
        <property type="term" value="P:phenylalanyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00281">
        <property type="entry name" value="Phe_tRNA_synth_alpha1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004529">
        <property type="entry name" value="Phe-tRNA-synth_IIc_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004530">
        <property type="entry name" value="Phe-tRNA-synth_IIc_mito"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004188">
        <property type="entry name" value="Phe-tRNA_ligase_II_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022911">
        <property type="entry name" value="Phe_tRNA_ligase_alpha1_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002319">
        <property type="entry name" value="Phenylalanyl-tRNA_Synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010978">
        <property type="entry name" value="tRNA-bd_arm"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11538:SF41">
        <property type="entry name" value="PTHR11538:SF41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02912">
        <property type="entry name" value="Phe_tRNA-synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01409">
        <property type="entry name" value="tRNA-synt_2d"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46589">
        <property type="entry name" value="SSF46589"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00468">
        <property type="entry name" value="pheS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12 13" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="9 13" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 13" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 13" id="KW-0436">Ligase</keyword>
    <keyword evidence="10 13" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 13" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11 13" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AA_TRNA_LIGASE_II" evidence="14">
        <location>
            <begin position="116"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="253"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000395"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010207"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KKO19886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="338" mass="38586" checksum="8B07639CA28BA216" modified="2015-11-11" version="1">MEEKLEEIKRNLHEEIRSIDAQKNAEHLRIKYLGRKGIISDLMKLIPTLPIDSRADFGQQVNSLKREITDSIEALFKTVSVQAVPKVKVELFDITLPGKLPFVGRNHPLTQTIADIKEVFASLGFDVAYGPEVELEYYNFEALNIPADHPSRTDFDTFYIKNDVLLRSQTSTVQIRVMEKQKPPIRIIAPGRVYRPDTVDARHSFMFHQVEGLLVDENVSFADLKGVLYQFIKAYFGQNVQMRLRPSFFPFTEPSAEVDISCSLCEGRGCSVCSYSGWVEILGAGMVDPNVFKAVHYDAEKYTGFAFGMGVERITMLKYGINDIRLFYENDLRFLSQF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY58</accession>
    <name>A0A0M2UY58_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative carboxylesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00782</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000099">
        <property type="protein sequence ID" value="KKO20495.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20495">
        <property type="protein sequence ID" value="KKO20495"/>
        <property type="gene ID" value="BROFUL_00782"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052689">
        <property type="term" value="F:carboxylic ester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012354">
        <property type="entry name" value="Esterase_lipase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022742">
        <property type="entry name" value="Hydrolase_4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12146">
        <property type="entry name" value="Hydrolase_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017388">
        <property type="entry name" value="Esterase_lipase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hydrolase_4" evidence="2">
        <location>
            <begin position="23"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="1">
        <location>
            <position position="100"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="1">
        <location>
            <position position="208"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="1">
        <location>
            <position position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR017388-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20495.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="260" mass="29905" checksum="234B771FC2E4E020" modified="2015-11-11" version="1">MQKNEILSDLSRYREEFILGHSNTACLLIHGFGCGPIQMRELAEKLSQWGFTARGILLPGHCKNMGGYSSTAHHDWIAKVESEYHQLKRVYREVVVIGFSLGALLTLQLSIRYSPEKIILMGTPLYLLRKYLPVPLAIRICKNFMKKVKTRQRRCYMESEGYTGYLRQPVDTHFSIPALYGLTEIMNVVNTGLQEVRSPALVIHSKKDLLAAPASAQHVMRHLGSDYKRLVWLERSHHLVMYDKEKDRVFRAIKEFVTDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY99</accession>
    <name>A0A0M2UY99_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Lipopolysaccharide biosynthesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00200</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000025">
        <property type="protein sequence ID" value="KKO21063.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21063">
        <property type="protein sequence ID" value="KKO21063"/>
        <property type="gene ID" value="BROFUL_00200"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045226">
        <property type="term" value="P:extracellular polysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005702">
        <property type="entry name" value="EPS_synthesis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01007">
        <property type="entry name" value="eps_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="272"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO21063.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="541" mass="60101" checksum="9659ED63E908A538" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYC7</accession>
    <name>A0A0M2UYC7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 11">Anthranilate synthase component 1</fullName>
            <ecNumber evidence="5 11">4.1.3.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">trpE</name>
        <name evidence="14" type="ORF">BROFUL_00699</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>chorismate + L-glutamine = anthranilate + H(+) + L-glutamate + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:21732"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16567"/>
            <dbReference type="ChEBI" id="CHEBI:29748"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="EC" id="4.1.3.27"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2 11">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 1/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 11">Heterotetramer consisting of two non-identical subunits: a beta subunit (TrpG) and a large alpha subunit (TrpE).</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 11">Belongs to the anthranilate synthase component I family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.3.27" evidence="5 11"/>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20580.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20580">
        <property type="protein sequence ID" value="KKO20580"/>
        <property type="gene ID" value="BROFUL_00699"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.887"/>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00040"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004049">
        <property type="term" value="F:anthranilate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000162">
        <property type="term" value="P:tryptophan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005801">
        <property type="entry name" value="ADC_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019999">
        <property type="entry name" value="Anth_synth_I-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006805">
        <property type="entry name" value="Anth_synth_I_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005256">
        <property type="entry name" value="Anth_synth_I_PabB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015890">
        <property type="entry name" value="Chorismate_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11236">
        <property type="entry name" value="PTHR11236"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04715">
        <property type="entry name" value="Anth_synt_I_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00425">
        <property type="entry name" value="Chorismate_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00095">
        <property type="entry name" value="ANTSNTHASEI"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56322">
        <property type="entry name" value="SSF56322"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00564">
        <property type="entry name" value="trpE_most"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 11" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9 11" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="10 11" id="KW-0456">Lyase</keyword>
    <keyword evidence="11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 11" id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="domain" description="Anth_synt_I_N" evidence="13">
        <location>
            <begin position="31"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="domain" description="Chorismate_bind" evidence="12">
        <location>
            <begin position="228"/>
            <end position="481"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000329"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004873"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00020653"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU364045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF04715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KKO20580.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="510" mass="57324" checksum="3AEA5E2E6153DFBB" modified="2015-11-11" version="1">MPKRYYPDYEEFKQLAVRGNLVPVYRQLFADALTPVSAFQKISDTGKAFLLESAAGGEKISRYSLLSADPFLEFTASGNRIEIKRRGREMELVYTHDPLCILRDEVKSFTPVQVDGLPQFFCCGVGYIGYDAIRYYESLPNTPKDDLLLPDIQVMFCDTMIIFDHVTKTMKVVCTAKIDGDRLENVYDAAVAKIDRIIEKLRTPVMPLSDDITTEKETNIAFSSNFERADFLKAVDRCKEYIRAGDIFQVVISQRFKTQTHADPFSIYRVLRVINPSPYMFYMKMDDLKLIGSSPEVMVKVEGKKITVRPIAGTRKRGKDDAEDTHFAQDLIADPKERAEHIMLLDLGRNDVGRVSRYGSVHIDEKMVIEKYSHVMHITSSVCGELEEGKNAFDSLKACLPAGTLSGAPKIRAMQIIDEIEPAKRGPYGGAVGYFDFFGNMNTCITIRTILLKGNDAYIQAGAGIVADSVPEREYEETVNKAKGLLRAIEIAEKITQERDEVLAGSIKES</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYJ7</accession>
    <name>A0A0M2UYJ7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00643</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20660">
        <property type="protein sequence ID" value="KKO20660"/>
        <property type="gene ID" value="BROFUL_00643"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007159">
        <property type="entry name" value="SpoVT-AbrB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037914">
        <property type="entry name" value="SpoVT-AbrB_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00966">
        <property type="entry name" value="SpoVT_AbrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89447">
        <property type="entry name" value="SSF89447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SpoVT-AbrB" evidence="1">
        <location>
            <begin position="6"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="82" mass="9616" checksum="997C020FA6A4E08C" modified="2015-11-11" version="1">MKTKLVSIGNSKGIRIPMAILKQCKIENEIDLEVEKEKIVIKPVKTSPREGWNDAFRLMHDKKDDALLFDETIDSMENWEWK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYN2</accession>
    <name>A0A0M2UYN2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01691</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000176">
        <property type="protein sequence ID" value="KKO19584.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19584">
        <property type="protein sequence ID" value="KKO19584"/>
        <property type="gene ID" value="BROFUL_01691"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010921">
        <property type="entry name" value="Trp_repressor/repl_initiator"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48295">
        <property type="entry name" value="SSF48295"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19584.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="61" mass="6864" checksum="0A206D999F43F773" modified="2015-11-11" version="1">MAMDLFSRVGGLSGTEIGEIMVVDYSTVSVGRKRLRERLRGNKHLSQMVQRVEVDLSTIKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYU7</accession>
    <name>A0A0M2UYU7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Tryptophan synthase beta chain</fullName>
            <ecNumber evidence="11">4.2.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">trpB</name>
        <name evidence="14" type="ORF">BROFUL_00020</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate + L-serine = D-glyceraldehyde 3-phosphate + H2O + L-tryptophan</text>
            <dbReference type="Rhea" id="RHEA:10532"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:57912"/>
            <dbReference type="ChEBI" id="CHEBI:58866"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="4.2.1.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 11">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 11">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 5/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5 11">Tetramer of two alpha and two beta chains.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 11">Belongs to the TrpB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.20" evidence="11"/>
    <dbReference type="EMBL" id="LAQJ01000005">
        <property type="protein sequence ID" value="KKO21248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21248">
        <property type="protein sequence ID" value="KKO21248"/>
        <property type="gene ID" value="BROFUL_00020"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.30"/>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00044"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004834">
        <property type="term" value="F:tryptophan synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06446">
        <property type="entry name" value="Trp-synth_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00133">
        <property type="entry name" value="Trp_synth_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006653">
        <property type="entry name" value="Trp_synth_b_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006654">
        <property type="entry name" value="Trp_synth_beta"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023026">
        <property type="entry name" value="Trp_synth_beta/beta-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001413">
        <property type="entry name" value="Trp_syn_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00263">
        <property type="entry name" value="trpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00168">
        <property type="entry name" value="TRP_SYNTHASE_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 11" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9 11" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="10 11" id="KW-0456">Lyase</keyword>
    <keyword evidence="8 11" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 11" id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="domain" description="PALP" evidence="13">
        <location>
            <begin position="73"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="12">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="11">
        <location>
            <position position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KKO21248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="415" mass="45475" checksum="D3ADC76ED0AC4798" modified="2015-11-11" version="1">MITTIAQSKTQKSKGISEGTILPDRMGHFGRFGGKFVPETIMPALDQLEKAYFEAKKDPSFNEELEYYLREYVGRPSTLYYAERLTKKLGGAKIYLKREDLNHTGAHKINNTIGQILLAKRMGKKRIIAETGAGQHGVATATAAAMFGIDCEVYMGEEDIRRQALNVFRMKLLGAKVIPVASGSRTLKDATNEALRDWMASVRNTHYIIGSVVGPHPYPMMVRDFQVIIGKEVRKQMLEKEQRLPDYLIACVGGGSNSMGLFHPFIEDKTVNMIGVEAGGLGIEIGQHASTLTSGKIGILHGSASYVLQDEDGQTLPVHSISAGLDYPGVGPEHSYLKDIGRAEYVSITDEEAVNAFQECARLEGIIPALEAAHAIAYTMKFAPRISKDKLIVVCLSGSGDKDSFEVAKKLGYEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYX0</accession>
    <name>A0A0M2UYX0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00266</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000031">
        <property type="protein sequence ID" value="KKO21017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21017">
        <property type="protein sequence ID" value="KKO21017"/>
        <property type="gene ID" value="BROFUL_00266"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644110" evidence="1">
        <location>
            <begin position="24"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="59" mass="6214" checksum="82949B3B6DA56205" modified="2015-11-11" version="1">MKGFCYSFAVVSALMFGAGVVNAAFVGSAMAEEKNCDKCGHVPAKAENDCKCDCHNAKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYY1</accession>
    <name>A0A0M2UYY1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Deacetylase sirtuin-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01606</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19674.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19674">
        <property type="protein sequence ID" value="KKO19674"/>
        <property type="gene ID" value="BROFUL_01606"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1985"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039444">
        <property type="entry name" value="SIR2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026590">
        <property type="entry name" value="Ssirtuin_cat_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13289">
        <property type="entry name" value="SIR2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50305">
        <property type="entry name" value="SIRTUIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Deacetylase sirtuin-type" evidence="3">
        <location>
            <begin position="9"/>
            <end position="355"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50305"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19674.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="709" mass="80456" checksum="D3442FA7CB3F00D2" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ02</accession>
    <name>A0A0M2UZ02_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Endonuclease III</fullName>
            <ecNumber evidence="5">4.2.99.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">DNA-(apurinic or apyrimidinic site) lyase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5 7" type="primary">nth</name>
        <name evidence="7" type="ORF">BROFUL_01581</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>2'-deoxyribonucleotide-(2'-deoxyribose 5'-phosphate)-2'-deoxyribonucleotide-DNA = a 3'-end 2'-deoxyribonucleotide-(2,3-dehydro-2,3-deoxyribose 5'-phosphate)-DNA + a 5'-end 5'-monophospho-2'-deoxyribonucleoside-DNA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:66592"/>
            <dbReference type="Rhea" id="RHEA-COMP:13180"/>
            <dbReference type="Rhea" id="RHEA-COMP:16897"/>
            <dbReference type="Rhea" id="RHEA-COMP:17067"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:136412"/>
            <dbReference type="ChEBI" id="CHEBI:157695"/>
            <dbReference type="ChEBI" id="CHEBI:167181"/>
            <dbReference type="EC" id="4.2.99.18"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="5">Binds 1 [4Fe-4S] cluster.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the Nth/MutY family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.99.18" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000166">
        <property type="protein sequence ID" value="KKO19709.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19709">
        <property type="protein sequence ID" value="KKO19709"/>
        <property type="gene ID" value="BROFUL_01581"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1950"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140078">
        <property type="term" value="F:class I DNA-(apurinic or apyrimidinic site) endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019104">
        <property type="term" value="F:DNA N-glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00056">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1670.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00942">
        <property type="entry name" value="Nth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011257">
        <property type="entry name" value="DNA_glycosylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004036">
        <property type="entry name" value="Endonuclease-III-like_CS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003265">
        <property type="entry name" value="HhH-GPD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023170">
        <property type="entry name" value="HhH_base_excis_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000445">
        <property type="entry name" value="HhH_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005759">
        <property type="entry name" value="Nth"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00633">
        <property type="entry name" value="HHH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00730">
        <property type="entry name" value="HhH-GPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00478">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48150">
        <property type="entry name" value="SSF48150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01083">
        <property type="entry name" value="nth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01155">
        <property type="entry name" value="ENDONUCLEASE_III_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="1 5" id="KW-0227">DNA damage</keyword>
    <keyword evidence="3 5" id="KW-0234">DNA repair</keyword>
    <keyword evidence="5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4 5" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="2 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5 7" id="KW-0456">Lyase</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0540">Nuclease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ENDO3c" evidence="6">
        <location>
            <begin position="41"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="190"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="197"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="200"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="206"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19709.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="216" mass="24318" checksum="C47248FEE5B14B70" modified="2015-11-11" version="1">MNAMPEERVKKILSLLEKAYPHAALVLHYKNPLELLVATILAAQCTDERVNKVTETLFKKYKSAKDYASTEPDVFEQEIRSTGFYRNKARNIIACGEELVERFGGKVPDTMEDLVTLSGVGRKTASVLLGNVFGKPAMAVDTHVFRVSHRLEFAKANDPDKVEQELCKIIPQDKWMRSCLVMGTHGRRTCIARKPICNACVIEKLCNSSDKTYHSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ18</accession>
    <name>A0A0M2UZ18_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Putative polysaccharide biosynthesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_00204</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000025">
        <property type="protein sequence ID" value="KKO21067.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21067">
        <property type="protein sequence ID" value="KKO21067"/>
        <property type="gene ID" value="BROFUL_00204"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="entry name" value="Polysacc_synt_C"/>
    </dbReference>
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        <property type="entry name" value="Polysacc_synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="45"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="87"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
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            <begin position="127"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="160"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="187"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
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            <begin position="249"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
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            <begin position="310"/>
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        </location>
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    <feature type="transmembrane region" description="Helical" evidence="6">
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            <begin position="346"/>
            <end position="367"/>
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    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
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            <end position="393"/>
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            <end position="420"/>
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            <end position="486"/>
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    <feature type="domain" description="Polysacc_synt_C" evidence="7">
        <location>
            <begin position="346"/>
            <end position="485"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
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        </source>
    </evidence>
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            <dbReference type="ARBA" id="ARBA00022989"/>
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    </evidence>
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            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
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        <source>
            <dbReference type="Pfam" id="PF14667"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO21067.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="509" mass="57940" checksum="24E23D2E69223040" modified="2015-11-11" version="1">MSLRKKYVKNSFLNVSGWLWLAIVNVVTTPYIFHKLGYDQYGILSLVLTVLGYFAFLDFGLGDAVIKFVAHYNTLKDYRKINRIISSIFLLYLAIGIVGGVLIFLFAKYFALNLFKVPLEFQSKSLYCFYIGAFGFSLNLVFAVISKIPEAIQRFDISNVVNVCIGSFVTFANVTILFLGYGLQELVVVNLMSTFVGIITFYVIIKKALPDFKIFIYFSLEEMREVFSYGLYTLFTKFSSIISQSINQLIIGVVLGPAGIGVINIPSKLVSRFTTLVSRIAYIVFPLTSELCALNDLTKIKSIYLKLSRYVYIISSLFFLILIAYSKSILYFWMGNDFAQKAYLPMVIITISMYLVTATMIPSLIAIGMTKPKYNALFSFIGAATNAIFIYPLTKYYGLTGSALSVLLGSFNSPFFIFFFNKKILNINNYTYFFNAFTKVTIMNLGFLILFSLFQRFIIQNIFSFCLVLFLSEIMMIGLFYLYGLYNEDRQAVKLKLIGVIAKRRIRSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ24</accession>
    <name>A0A0M2UZ24_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Two-component sensor kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_01567</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000164">
        <property type="protein sequence ID" value="KKO19719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19719">
        <property type="protein sequence ID" value="KKO19719"/>
        <property type="gene ID" value="BROFUL_01567"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1930"/>
    <dbReference type="Proteomes" id="UP000034954">
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    </dbReference>
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        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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    </dbReference>
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    </dbReference>
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    </dbReference>
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    </dbReference>
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    </dbReference>
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    </dbReference>
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    </dbReference>
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    </dbReference>
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    </dbReference>
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        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
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    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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    </dbReference>
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    </dbReference>
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    </dbReference>
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    </dbReference>
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    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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    </dbReference>
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    </dbReference>
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    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="9" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="6"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="5">
        <location>
            <begin position="167"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="6">
        <location>
            <begin position="215"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="8">
        <location>
            <begin position="338"/>
            <end position="471"/>
        </location>
    </feature>
    <feature type="domain" description="EAL" evidence="7">
        <location>
            <begin position="480"/>
            <end position="570"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="251"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="570" mass="65434" checksum="132DBAECC5A790B6" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ53</accession>
    <name>A0A0M2UZ53_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Mor transcription activator family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00348</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000044">
        <property type="protein sequence ID" value="KKO20915.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20915">
        <property type="protein sequence ID" value="KKO20915"/>
        <property type="gene ID" value="BROFUL_00348"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
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        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014875">
        <property type="entry name" value="Mor_transcription_activator"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08765">
        <property type="entry name" value="Mor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mor" evidence="1">
        <location>
            <begin position="15"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08765"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20915.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="94" mass="10695" checksum="EB08E89F5B253B64" modified="2015-11-11" version="1">MENDIRPNDLPAYYQQIAKVIGIENAIKLGKEFGGEQFYLPKLDICLARVKKRKIIEEFKGGNYGALAGKYGVTSAWVRQIIREHRREKATNVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ57</accession>
    <name>A0A0M2UZ57_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BROFUL_00353</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000044">
        <property type="protein sequence ID" value="KKO20920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20920">
        <property type="protein sequence ID" value="KKO20920"/>
        <property type="gene ID" value="BROFUL_00353"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.434"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990077">
        <property type="term" value="C:primosome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003896">
        <property type="term" value="F:DNA primase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01029">
        <property type="entry name" value="TOPRIM_primases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040538">
        <property type="entry name" value="Cch_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036977">
        <property type="entry name" value="DNA_primase_Znf_CHC2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009270">
        <property type="entry name" value="DUF927"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034154">
        <property type="entry name" value="TOPRIM_DnaG/twinkle"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006171">
        <property type="entry name" value="TOPRIM_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002694">
        <property type="entry name" value="Znf_CHC2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06048">
        <property type="entry name" value="DUF927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18662">
        <property type="entry name" value="HTH_56"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01807">
        <property type="entry name" value="zf-CHC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00493">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00400">
        <property type="entry name" value="ZnF_CHCC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0235">DNA replication</keyword>
    <keyword evidence="1" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-0639">Primosome</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <keyword evidence="7" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="ZnF_CHCC" evidence="11">
        <location>
            <begin position="11"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="domain" description="Toprim" evidence="12">
        <location>
            <begin position="164"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="57"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00400"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM00493"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO20920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="833" mass="93929" checksum="3CC3381EAACB79C9" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ82</accession>
    <name>A0A0M2UZ82_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Co-chaperonin GroES</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">10 kDa chaperonin</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Chaperonin-10</fullName>
            <shortName evidence="3">Cpn10</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">groES</name>
        <name evidence="3" type="synonym">groS</name>
        <name evidence="5" type="ORF">BROFUL_00163</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 4">Together with the chaperonin GroEL, plays an essential role in assisting protein folding. The GroEL-GroES system forms a nano-cage that allows encapsulation of the non-native substrate proteins and provides a physical environment optimized to promote and accelerate protein folding. GroES binds to the apical surface of the GroEL ring, thereby capping the opening of the GroEL channel.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Heptamer of 7 subunits arranged in a ring. Interacts with the chaperonin GroEL.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3 4">Belongs to the GroES chaperonin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000017">
        <property type="protein sequence ID" value="KKO21117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21117">
        <property type="protein sequence ID" value="KKO21117"/>
        <property type="gene ID" value="BROFUL_00163"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.201"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00320">
        <property type="entry name" value="cpn10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.33.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00580">
        <property type="entry name" value="CH10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020818">
        <property type="entry name" value="Chaperonin_GroES"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037124">
        <property type="entry name" value="Chaperonin_GroES_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018369">
        <property type="entry name" value="Chaprnonin_Cpn10_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10772">
        <property type="entry name" value="PTHR10772"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00166">
        <property type="entry name" value="Cpn10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00297">
        <property type="entry name" value="CHAPERONIN10"/>
    </dbReference>
    <dbReference type="SMART" id="SM00883">
        <property type="entry name" value="Cpn10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00681">
        <property type="entry name" value="CHAPERONINS_CPN10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 4" id="KW-0143">Chaperone</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00580"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO21117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="105" mass="11722" checksum="4CBC482A9E94FA9D" modified="2015-11-11" version="1">MLIFMRRGRVKMIRPLDDRVVIEPMEAEEKTAGGILLPDTAKEKPMKGKIIAVGEGKMLESGKRAELLVKKGDKVLYGKYAGTEVTVDGKEYLVMRESDILAKIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZB9</accession>
    <name>A0A0M2UZB9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00123</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000015">
        <property type="protein sequence ID" value="KKO21162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21162">
        <property type="protein sequence ID" value="KKO21162"/>
        <property type="gene ID" value="BROFUL_00123"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="121" mass="13791" checksum="87B11684D1D10773" modified="2015-11-11" version="1">MCLCLCGWRRGDQNVNYALSVKKIAGSLSDAICNVSFPNGFLRHYRTGYRKDTASAQQRILFSAQIFLARQKTKKDTAGGNCQVSWRNRGKQVWLYKNLLEKGGDKYAYKKSCVIKMLLND</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZC3</accession>
    <name>A0A0M2UZC3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01454</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000149">
        <property type="protein sequence ID" value="KKO19829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19829">
        <property type="protein sequence ID" value="KKO19829"/>
        <property type="gene ID" value="BROFUL_01454"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="47" mass="5260" checksum="FB3054F137485AF0" modified="2015-11-11" version="1" fragment="single">MGATLCTESITVEFGCQIRVELKDGSLESILKAFCKILPEILRDFIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZF0</accession>
    <name>A0A0M2UZF0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_00084</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000008">
        <property type="protein sequence ID" value="KKO21202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21202">
        <property type="protein sequence ID" value="KKO21202"/>
        <property type="gene ID" value="BROFUL_00084"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025662">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025943">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025944">
        <property type="entry name" value="Sigma_54_int_dom_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00158">
        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01590">
        <property type="entry name" value="HTHFIS"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00675">
        <property type="entry name" value="SIGMA54_INTERACT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00676">
        <property type="entry name" value="SIGMA54_INTERACT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00688">
        <property type="entry name" value="SIGMA54_INTERACT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="8">
        <location>
            <begin position="5"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="7">
        <location>
            <begin position="144"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="6">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO21202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="448" mass="50115" checksum="4FFD267E2C176D72" modified="2015-11-11" version="1">MTKPRILLIDDDKTALDGLVKILAHDGYPVSGALSGYEALNLLSGKTFDIVVTDMKLPGMGGLSLIHELRKKEEPMAIVVITAYSSVKTAVEAIKCGADDYLTKPVNVEELELVLEKLWERQQLIFQNRLLKEKLKDKYKSSELVGSTPQMQGIFKTIEDVAPSAASILILGETGTGKELVANAIHYQSDRSSKPLVALHCAALSEGVLESELFGHEKGAFTGAIQARKGRFEMADGGTLFLDEVGEMSLKVQVKLLRVLEKGEFERVGGEKTLKVDVRLIAATNRNLEREVSEGRFREDLFYRLNVITVHLPPLRERRDDIPLLSNFFVIKYIKKYKKEIRGFDPDAMEALCLYQWPGNVRELENVMERAVVLCKKSMIAIDLLPKNIVPNKEDVSMIKIPLGTSLKEAEKEIIQKTLQMAQGSKKEAAKILGISSRKIEYKVKEWS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZH8</accession>
    <name>A0A0M2UZH8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00264</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000031">
        <property type="protein sequence ID" value="KKO21015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21015">
        <property type="protein sequence ID" value="KKO21015"/>
        <property type="gene ID" value="BROFUL_00264"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="13"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO21015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="134" mass="15062" checksum="FB7DFE2CCC718A79" modified="2015-11-11" version="1">MMALLDPRAGHYSLLITDDDESCRDSIKDIFEPKGYTTYLASCGREAIKIARSEEVHLLILDAHLPDYSGLETFKIIKKEISLVIPCIFMSGAITKELQIDLISANAYTLIPKPININILRDSVDQVIAKYYGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZT9</accession>
    <name>A0A0M2UZT9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00796</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000101">
        <property type="protein sequence ID" value="KKO20481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20481">
        <property type="protein sequence ID" value="KKO20481"/>
        <property type="gene ID" value="BROFUL_00796"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1009"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026350">
        <property type="entry name" value="GxxExxY"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13366">
        <property type="entry name" value="PDDEXK_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04256">
        <property type="entry name" value="GxxExxY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="77" mass="8989" checksum="F83DA89B5D07F20C" modified="2015-11-11" version="1">MSLPIKYEGVRIDAGYRIDMLVDNCVIIENKTVEKILPIHEAQLLTYLKMKNCKLGYLLNWHVILMKDGIKRMVNNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZU9</accession>
    <name>A0A0M2UZU9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7 9">GTPase Der</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">GTP-binding protein EngA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">der</name>
        <name evidence="11" type="ORF">BROFUL_00156</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7 9">GTPase that plays an essential role in the late steps of ribosome biogenesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Associates with the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 8 9">Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000017">
        <property type="protein sequence ID" value="KKO21110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21110">
        <property type="protein sequence ID" value="KKO21110"/>
        <property type="gene ID" value="BROFUL_00156"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.194"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042254">
        <property type="term" value="P:ribosome biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00195">
        <property type="entry name" value="GTPase_Der"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031166">
        <property type="entry name" value="G_ENGA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016484">
        <property type="entry name" value="GTP-bd_EngA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032859">
        <property type="entry name" value="KH_dom-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14714">
        <property type="entry name" value="KH_dom-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006485">
        <property type="entry name" value="GTP-binding_EngA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03594">
        <property type="entry name" value="GTPase_EngA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51712">
        <property type="entry name" value="G_ENGA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7 9" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="5 7 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0677">Repeat</keyword>
    <keyword evidence="3 7" id="KW-0690">Ribosome biogenesis</keyword>
    <feature type="domain" description="EngA-type G" evidence="10">
        <location>
            <begin position="30"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="domain" description="EngA-type G" evidence="10">
        <location>
            <begin position="204"/>
            <end position="377"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="36"/>
            <end position="43"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="83"/>
            <end position="87"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="146"/>
            <end position="149"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="210"/>
            <end position="217"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="257"/>
            <end position="261"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="322"/>
            <end position="325"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00020953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU004481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51712"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO21110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="469" mass="52296" checksum="0EB6A40CBF0DBFEB" modified="2015-11-11" version="1">MWGKRGAKVAAKGSLIQLTKILFFETMTIPVVTIVGRPNVGKSSLLNCLAKRRISIVEPTSGVTRDRVSTDIQHKGCLFELIDTGGMGVKDADGLTDEIEAQIEIALHQADLVLFVADIREGITPLDTMVAEKLRRLRKKVILIANKVDTPKLEYHVPDFHSLGFGDPLPISALEGYGRSELLDTIVSLLPAPSPEAVSPEPLLKLAIVGKRNAGKSTLINTLAKEDRVIVSDVPGTTRDSVDVRFEIRGKPYLAIDTAGLRKKRQVKDSIEFYSMARAQRSIRRADVVLFLIDATLKVSEVDKKLGDYIVSEYKPCIIVINKWDLVSGVETEKFNDYIYQCLPGLSFAPISFISARNNVHVMEMLGLASELYDQSRVRVTTSELNQALEEALTLHRPTRTKAKSPKIYYTTQVSVAPPTFVLFVNDPKLFDSDYERYLSNQLRNKLPFSEVPLKFHFRARTKSALNPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZW8</accession>
    <name>A0A0M2UZW8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Arginine--tRNA ligase</fullName>
            <ecNumber evidence="8">6.1.1.19</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Arginyl-tRNA synthetase</fullName>
            <shortName evidence="8">ArgRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">argS</name>
        <name evidence="12" type="ORF">BROFUL_01225</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg)</text>
            <dbReference type="Rhea" id="RHEA:20301"/>
            <dbReference type="Rhea" id="RHEA-COMP:9658"/>
            <dbReference type="Rhea" id="RHEA-COMP:9673"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:32682"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78513"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.19"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="8">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8 9">Belongs to the class-I aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.19" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000134">
        <property type="protein sequence ID" value="KKO20049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20049">
        <property type="protein sequence ID" value="KKO20049"/>
        <property type="gene ID" value="BROFUL_01225"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1517"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004814">
        <property type="term" value="F:arginine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006420">
        <property type="term" value="P:arginyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00671">
        <property type="entry name" value="ArgRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00123">
        <property type="entry name" value="Arg_tRNA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001278">
        <property type="entry name" value="Arg-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005148">
        <property type="entry name" value="Arg-tRNA-synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036695">
        <property type="entry name" value="Arg-tRNA-synth_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035684">
        <property type="entry name" value="ArgRS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008909">
        <property type="entry name" value="DALR_anticod-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11956">
        <property type="entry name" value="PTHR11956"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03485">
        <property type="entry name" value="Arg_tRNA_synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05746">
        <property type="entry name" value="DALR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00750">
        <property type="entry name" value="tRNA-synt_1d"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01038">
        <property type="entry name" value="TRNASYNTHARG"/>
    </dbReference>
    <dbReference type="SMART" id="SM01016">
        <property type="entry name" value="Arg_tRNA_synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00836">
        <property type="entry name" value="DALR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="SSF47323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55190">
        <property type="entry name" value="SSF55190"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00456">
        <property type="entry name" value="argS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8 9" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="5 8 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 8 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 8 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 8 9" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Arg_tRNA_synt_N" evidence="11">
        <location>
            <begin position="1"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="domain" description="DALR_1" evidence="10">
        <location>
            <begin position="440"/>
            <end position="555"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001766"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU363038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00836"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM01016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO20049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="555" mass="63284" checksum="6D4E5C2AE1A71B68" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V032</accession>
    <name>A0A0M2V032_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">MEMO1 family protein BROFUL_01179</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01179</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the MEMO1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000126">
        <property type="protein sequence ID" value="KKO20104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20104">
        <property type="protein sequence ID" value="KKO20104"/>
        <property type="gene ID" value="BROFUL_01179"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1458"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd07361">
        <property type="entry name" value="MEMO_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00055">
        <property type="entry name" value="MEMO1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002737">
        <property type="entry name" value="MEMO1_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11060">
        <property type="entry name" value="PTHR11060"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01875">
        <property type="entry name" value="Memo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="282" mass="31088" checksum="B74EFF0EAEBE7B17" modified="2015-11-11" version="1">MTTCSVFPACFKRVMIIRQPAVAGSFYSDNPTQLQSDIEGFVVRDCDKQPVLGVISPHAGYIYSGRVAGNLYSRITIPDTVVILAPNHTGYGAPYSIWPGGQWRTPLGDVTIDEVVVEELTDACSLLEKDRAAHLYEHAAEVQIPFIQYFNPRSEIVVIVLSARSVEDLKNIGKKLSQVLQKLRPHALVVASSDMTHHESQASANRKDKIAIGEVLAMNEDALYSKVREMNITMCGIYPAVTMLVCSKERGAKRAELVRYETSGDITGDYDHVVGYAGIIVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0R6</accession>
    <name>A0A0M2V0R6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Aldolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00951</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000116">
        <property type="protein sequence ID" value="KKO20319.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20319">
        <property type="protein sequence ID" value="KKO20319"/>
        <property type="gene ID" value="BROFUL_00951"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1198"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016832">
        <property type="term" value="F:aldehyde-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000771">
        <property type="entry name" value="FBA_II"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01116">
        <property type="entry name" value="F_bP_aldolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20319.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="462" mass="51826" checksum="EEF9117453FE9B49" modified="2015-11-11" version="1">MLYHTKEDLLNDLKNVADIQKNGTVLVLNKEVLRNKKMDALVYNAVFNKEAALRDASRSLIRNMGNKLGVVSASIHSLYEAMGKKEYKGFTVPAINIRGLTYDVSRAIFRAARKNHVGAFIFEIARSEIGYTDQRPAEYSAVILAAAIREGFEGPVFIQGDHFQINAKKYEKDKECEITTVKKLIKEAIDAGFYNVDIDTSTLVDLNKPNLTEQQRLNFEFAAEFTAYIRTLEPKGITVSVGGEIGEVGKKNSTVEELRAFMDGFTDTLSRKGKGLKGISKISVQTGTSHGGVPLPDGTVAKVKLDFDTLKNLSMAARDEYGLSGAVQHGASTLPADAFDKFPEAGAAEVHLATEFQNMIYESKVFPQDFRKEIYDFFKNHPDIKKEWKEGDTEDQFIYKVRKNGFGPFKERFWNLPDNVKKKIGEELEAKFDFLFKKLNVVHSKEIVKKTIKPVEVALPNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0Y4</accession>
    <name>A0A0M2V0Y4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">FG-GAP repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00457</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000060">
        <property type="protein sequence ID" value="KKO20816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20816">
        <property type="protein sequence ID" value="KKO20816"/>
        <property type="gene ID" value="BROFUL_00457"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.572"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.130">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013517">
        <property type="entry name" value="FG-GAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013519">
        <property type="entry name" value="Int_alpha_beta-p"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028994">
        <property type="entry name" value="Integrin_alpha_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01839">
        <property type="entry name" value="FG-GAP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00191">
        <property type="entry name" value="Int_alpha"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69318">
        <property type="entry name" value="SSF69318"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="208" mass="21862" checksum="474E9ED689C3ADC2" modified="2015-11-11" version="1">MLYGSFNGLQANGVGAPDDQFWQQGGDVHDHAEEKDNFGLPLASGDFNNDGYDDLAVGVSDEDIIEDEAGHLNDEGAVTVLYGSSDGLQANGVNGPDDQFWHQNSPGMRSFAEIKDCFGSSLGVGDYNGDGSDDLAIGIFKEDARARSLFDAGAVAVLYGSSTAGLQVSAPDDQLWGQNSPGVLDEAEDGDHFGMALAETHEDGDLPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V132</accession>
    <name>A0A0M2V132_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Carboxy-S-adenosyl-L-methionine synthase</fullName>
            <shortName evidence="1">Cx-SAM synthase</shortName>
            <ecNumber evidence="1">2.1.3.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">cmoA</name>
        <name evidence="4" type="ORF">BROFUL_00839</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>prephenate + S-adenosyl-L-methionine = 3-phenylpyruvate + carboxy-S-adenosyl-L-methionine + H2O</text>
            <dbReference type="Rhea" id="RHEA:51692"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:18005"/>
            <dbReference type="ChEBI" id="CHEBI:29934"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:134278"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class I-like SAM-binding methyltransferase superfamily. Cx-SAM synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.3.-" evidence="1"/>
    <dbReference type="EMBL" id="LAQJ01000105">
        <property type="protein sequence ID" value="KKO20414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20414">
        <property type="protein sequence ID" value="KKO20414"/>
        <property type="gene ID" value="BROFUL_00839"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1060"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016743">
        <property type="term" value="F:carboxyl- or carbamoyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1904047">
        <property type="term" value="F:S-adenosyl-L-methionine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002098">
        <property type="term" value="P:tRNA wobble uridine modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01589">
        <property type="entry name" value="Cx_SAM_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005271">
        <property type="entry name" value="CmoA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041698">
        <property type="entry name" value="Methyltransf_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43861:SF2">
        <property type="entry name" value="PTHR43861:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13649">
        <property type="entry name" value="Methyltransf_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006325">
        <property type="entry name" value="MeTrfase_bac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00740">
        <property type="entry name" value="TIGR00740"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="1 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_25" evidence="3">
        <location>
            <begin position="59"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="1 2">
        <location>
            <begin position="63"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="1 2">
        <location>
            <begin position="115"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1 2">
        <location>
            <position position="38"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="198"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01589"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR006325-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="241" mass="27819" checksum="9FB0F80DE1413D5B" modified="2015-11-11" version="1">MSKDEIFKESMTTIADFNFGEKVASVFDDMLDRSVPFYRETQKMIVEMAVDFAVEGTNIYDLGCSTGTTLLNMGQNIPGKVKFIGLDYSPDMLAKCKQKLNAHHFSREHELICADLNQGVNIENASVVVMLLTLQFIRPLNRDKLIGNILRGLNENGCLILVEKILGEDSIFNRLFIKYYYDFKRRNGYSELEIAQKREALENVLIPYKLLENRELLLKEGFRYCDVFFKWYNFCGIVAVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V142</accession>
    <name>A0A0M2V142_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00854</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000105">
        <property type="protein sequence ID" value="KKO20429.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20429">
        <property type="protein sequence ID" value="KKO20429"/>
        <property type="gene ID" value="BROFUL_00854"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1079"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007059">
        <property type="term" value="P:chromosome segregation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01805">
        <property type="entry name" value="ScpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003768">
        <property type="entry name" value="ScpA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33969">
        <property type="entry name" value="PTHR33969"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02616">
        <property type="entry name" value="SMC_ScpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0159">Chromosome partition</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20429.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="243" mass="28399" checksum="1348C01DB4960D40" modified="2015-11-11" version="1">MANEYKVDLDVYNGPLDLLLYLIRKEEVNICDIPIARITDQYLQYVEALHALDMNIVGDFLVMAATLMYVKSYMLLPRTEIKEDEEEIEDPRSSLVKQLLEYKRYKERTFILADRAAEWEKKCSRIPGESLLEIPEDKGEQLPLEGIRIWDLLQRFSQLMKQLSLDVSTKVTYDDTPIQEYMDTVLEKVHLHTSVSFADLFAGIYERRRIIGFFLALLELVRLARVKIEQPANYADIHISLFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1Q3</accession>
    <name>A0A0M2V1Q3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00650</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000087">
        <property type="protein sequence ID" value="KKO20614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20614">
        <property type="protein sequence ID" value="KKO20614"/>
        <property type="gene ID" value="BROFUL_00650"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.822"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1290">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002686">
        <property type="entry name" value="Transposase_17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036515">
        <property type="entry name" value="Transposase_17_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01797">
        <property type="entry name" value="Y1_Tnp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01321">
        <property type="entry name" value="Y1_Tnp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143422">
        <property type="entry name" value="SSF143422"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Y1_Tnp" evidence="1">
        <location>
            <begin position="5"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="153" mass="18199" checksum="6934E54335F427CA" modified="2015-11-11" version="1">MAGTFSQVYIQVVFTVKGWENLIGKEWKDELHRYIAGVIKGKEQKPIIVNGMPDHIHAFVGLRPAMAISDLVRDIKNNSSNFINENKLVKGKFSWQEGYGVFSYSHSHIQNVYDYILNQEEHHRTKTFREEYIDFLKKFEIEYNEKYLFEWME</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1T5</accession>
    <name>A0A0M2V1T5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Nitrite/formate transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_00597</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000083">
        <property type="protein sequence ID" value="KKO20669.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20669">
        <property type="protein sequence ID" value="KKO20669"/>
        <property type="gene ID" value="BROFUL_00597"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.752"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1080.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023271">
        <property type="entry name" value="Aquaporin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000292">
        <property type="entry name" value="For/NO2_transpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30520">
        <property type="entry name" value="PTHR30520"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01226">
        <property type="entry name" value="Form_Nir_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00790">
        <property type="entry name" value="fnt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="43"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="69"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="118"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="171"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="202"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="263"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20669.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="306" mass="33584" checksum="313A314AC502D91D" modified="2015-11-11" version="1">MADQNTPKTVKIVDIDAYSPPQIAERIDTIATVKASIDTTKTFLLGILAGAYIAFGAQFATLVTCDSTLHYGLTALVAGIVFSLGLILVVIASAELFTGNTLIIMGYVSRRINTRDMLNNWVISYAGNFVGSISMVFWMYHSHQFEFFHHMVGAKALLIANMKVNYTFKTALARGVLCNSMVCLAVWLCFSGRSVADKVISIIFPIGGFVASGFEHSIANMYFIPIGIVLRKNPDVVAAAEKMTGKALDLSQLTWKGFVFNNLIAVTLGNIVGGVILVGIMFWFVYLRPNISLSFSVKQDFFREKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1V8</accession>
    <name>A0A0M2V1V8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00157</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000017">
        <property type="protein sequence ID" value="KKO21111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21111">
        <property type="protein sequence ID" value="KKO21111"/>
        <property type="gene ID" value="BROFUL_00157"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="28"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="92"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="140"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="176"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="235"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="316"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="366"/>
            <end position="396"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO21111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="396" mass="43355" checksum="68F589CF80ACAE6B" modified="2015-11-11" version="1">MGETKMTMHDWRDIFRAFKMALDPRKMLLGYAGLLVSLAWCTVVVAFSSALQIIDTTPAIFTKLVLSSVKESIPVVAKSVCSAIMSLDVGEFFVFGVLVFGLLVIWSLVGGAITRLAALDYARDESIRLSDALKFARKKLWSYFWSPLVPVIGVCFFAICNVIGGFIGRIPVAGEVFVALGFPFALVSGFFMIFIGAIGALGLCFMFPTISAEGSDAFDAMSRAYSYVLSRPKQFLAYCTVNVLYGFVCLFVIAFVAWLMIRLSFCTIGAGMGQKFSAVQSFLLQKCSIACLGFCSATAPESAASAVPLDRWSLKFLAGMLLVYIFLIKLAVWSFLTTYVFSAKTIIYFLLRKEIDSTDVSDVYLEEDEQTQKKDGTSSSSEGGQENPSPDKEGKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V239</accession>
    <name>A0A0M2V239_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Cytosine-specific methyltransferase</fullName>
            <ecNumber evidence="8">2.1.1.37</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">dcm_1</name>
        <name evidence="9" type="ORF">BROFUL_00068</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>a 2'-deoxycytidine in DNA + S-adenosyl-L-methionine = a 5-methyl-2'-deoxycytidine in DNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:13681"/>
            <dbReference type="Rhea" id="RHEA-COMP:11369"/>
            <dbReference type="Rhea" id="RHEA-COMP:11370"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:85452"/>
            <dbReference type="ChEBI" id="CHEBI:85454"/>
            <dbReference type="EC" id="2.1.1.37"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="6 7">Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.37" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000008">
        <property type="protein sequence ID" value="KKO21186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21186">
        <property type="protein sequence ID" value="KKO21186"/>
        <property type="gene ID" value="BROFUL_00068"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.85"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003886">
        <property type="term" value="F:DNA (cytosine-5-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018117">
        <property type="entry name" value="C5_DNA_meth_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001525">
        <property type="entry name" value="C5_MeTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031303">
        <property type="entry name" value="C5_meth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00145">
        <property type="entry name" value="DNA_methylase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00105">
        <property type="entry name" value="C5METTRFRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00675">
        <property type="entry name" value="dcm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00094">
        <property type="entry name" value="C5_MTASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00095">
        <property type="entry name" value="C5_MTASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51679">
        <property type="entry name" value="SAM_MT_C5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6 8" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0680">Restriction system</keyword>
    <keyword evidence="4 6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 6 8" id="KW-0808">Transferase</keyword>
    <feature type="active site" evidence="6">
        <location>
            <position position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000743"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO21186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="414" mass="48075" checksum="1A42F11903F4331B" modified="2015-11-11" version="1">MRYIDLFAGAGGFSEGFKRAGFEPVAHVEIDPAACFTLKTRLSYHYLNENKKLDIYIKYLKGEISRNLLYSVIPSHILGSVINLSIGDENNFKIFQMVEKLAGRKKIDIIVGGPPCQAYSLVGRARDRNGMRDDPRNHLYVQYGRFLKKYSPKLFIFENVLGLLSAEKGKYFKNIQADFKSFGYIVEPFIVNANEFGVLQNRKRVIIIGWKKDINFSFDQLKCQSRVEYKVGNIFNDLPKLSDGKGKDKYYEYAEGINDYLSFTRIRNGLDVLTQHITRPHTEQDKEIYRIAVRKWKRSKERLDYNDLPERLKTHKNRYAFLDRFKVVADDVPYSQTVVAHIAKDGHYYIHPDIEQNRSISVREAARLQSFPDDYYFEGVKEGKNRTAAFRQIGNAVPPLMIEKIAKLLIEYLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V274</accession>
    <name>A0A0M2V274_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_00437</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000058">
        <property type="protein sequence ID" value="KKO20824.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20824">
        <property type="protein sequence ID" value="KKO20824"/>
        <property type="gene ID" value="BROFUL_00437"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006603">
        <property type="entry name" value="PQ-loop_rpt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04193">
        <property type="entry name" value="PQ-loop"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="29"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="55"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20824.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="84" mass="9279" checksum="82C165F800174F6C" modified="2015-11-11" version="1">MGTIAAICTTIGFVPQIIRGIKTKELSDVSPVMLTLLLVGCSLWLTYGIHLKNPIIALANGFTLSFVITILFLRALYKKNRSER</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2E6</accession>
    <name>A0A0M2V2E6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00399</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000053">
        <property type="protein sequence ID" value="KKO20874.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20874">
        <property type="protein sequence ID" value="KKO20874"/>
        <property type="gene ID" value="BROFUL_00399"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20874.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="58" mass="6414" checksum="597362B5427D98DA" modified="2015-11-11" version="1">MSLFLSQVLNELKTKAIIVENAMDIRADDVAIDRNTAVQDIYLLPARSVILAKGLTKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V395</accession>
    <name>A0A0M2V395_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">3-isopropylmalate dehydratase large subunit</fullName>
            <ecNumber evidence="6">4.2.1.33</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Alpha-IPM isomerase</fullName>
            <shortName evidence="6">IPMI</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Isopropylmalate isomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">leuC</name>
        <name evidence="8" type="ORF">BROFUL_00140</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>(2R,3S)-3-isopropylmalate = (2S)-2-isopropylmalate</text>
            <dbReference type="Rhea" id="RHEA:32287"/>
            <dbReference type="ChEBI" id="CHEBI:1178"/>
            <dbReference type="ChEBI" id="CHEBI:35121"/>
            <dbReference type="EC" id="4.2.1.33"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="6">Binds 1 [4Fe-4S] cluster per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 2/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Heterodimer of LeuC and LeuD.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the aconitase/IPM isomerase family. LeuC type 2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.33" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000016">
        <property type="protein sequence ID" value="KKO21139.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21139">
        <property type="protein sequence ID" value="KKO21139"/>
        <property type="gene ID" value="BROFUL_00140"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.176"/>
    <dbReference type="UniPathway" id="UPA00048">
        <property type="reaction ID" value="UER00071"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003861">
        <property type="term" value="F:3-isopropylmalate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009098">
        <property type="term" value="P:leucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01583">
        <property type="entry name" value="IPMI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.499.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01027">
        <property type="entry name" value="LeuC_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015931">
        <property type="entry name" value="Acnase/IPM_dHydase_lsu_aba_1/3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001030">
        <property type="entry name" value="Acoase/IPM_deHydtase_lsu_aba"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018136">
        <property type="entry name" value="Aconitase_4Fe-4S_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036008">
        <property type="entry name" value="Aconitase_4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011826">
        <property type="entry name" value="HAcnase/IPMdehydase_lsu_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006251">
        <property type="entry name" value="Homoacnase/IPMdehydase_lsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033941">
        <property type="entry name" value="IPMI_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011823">
        <property type="entry name" value="IsopropMal_deHydtase_lsu_bac"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00330">
        <property type="entry name" value="Aconitase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00415">
        <property type="entry name" value="ACONITASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53732">
        <property type="entry name" value="SSF53732"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01343">
        <property type="entry name" value="hacA_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02086">
        <property type="entry name" value="IPMI_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02083">
        <property type="entry name" value="LEU2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00450">
        <property type="entry name" value="ACONITASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 6" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="6" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="3 6" id="KW-0408">Iron</keyword>
    <keyword evidence="4 6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="6" id="KW-0432">Leucine biosynthesis</keyword>
    <keyword evidence="5 6" id="KW-0456">Lyase</keyword>
    <keyword evidence="2 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aconitase" evidence="7">
        <location>
            <begin position="5"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="298"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="358"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="361"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00330"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO21139.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="420" mass="45572" checksum="6923801F6B1F5D02" modified="2015-11-11" version="1">MTITEKIIADHSGLKEVHPGQFVYAHVDICLGNDITAPIAIEEFEKTGISKVFDPEKIVLVPDHFTPNKDIKSAQQSKVLRIFAEKHHLKHYFEIGRVGIEHALLPEQGIVGPGDLVIGADSHTCTYGALGAFSTGVGSTDLAACFATGKVWLKVPESIKFVFHGKVKNWTSGKDLILYTIGKIGVDGALYKAMEFTGSAISNLPMDDRFAICNMAIEAGAKSGIIAPDKNTEDYIKSRFRRKPIMYHSDPGCTYAKTYEFHADEISPQVALPSLPENTKPVEEVSGIKIDQVVIGSCTNGRISDLRIAARFLKGKKVHPALRLIIFPATQEIYKQAIQEGLIEIFIDAEAVVSTPTCGPCLGGHMGILAEGERALSTTNRNFVGRMGHPKSEIYLCSPAVAAASAITGKITPPDEIMKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V3F9</accession>
    <name>A0A0M2V3F9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">ATP-dependent RNA helicase (RNA polymerase associated protein)</fullName>
            <ecNumber evidence="4">1.1.1.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">hepA</name>
        <name evidence="4" type="ORF">BROFUL_00081</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.-" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000008">
        <property type="protein sequence ID" value="KKO21199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21199">
        <property type="protein sequence ID" value="KKO21199"/>
        <property type="gene ID" value="BROFUL_00081"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.100"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140658">
        <property type="term" value="F:ATP-dependent chromatin remodeler activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10810">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022138">
        <property type="entry name" value="Helicase_SWF/SNF-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038718">
        <property type="entry name" value="SNF2-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000330">
        <property type="entry name" value="SNF2_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12419">
        <property type="entry name" value="DUF3670"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00176">
        <property type="entry name" value="SNF2-rel_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="2">
        <location>
            <begin position="443"/>
            <end position="596"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="3">
        <location>
            <begin position="719"/>
            <end position="872"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="339"/>
            <end position="366"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO21199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="888" mass="101462" checksum="21A86DEAD1401C7F" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPV5</accession>
    <name>A0A0M2UPV5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_03378</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17927.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17927">
        <property type="protein sequence ID" value="KKO17927"/>
        <property type="gene ID" value="BROFUL_03378"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4154"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03255">
        <property type="entry name" value="ABC_MJ0796_LolCDE_FtsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017911">
        <property type="entry name" value="MacB_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="13"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="49"/>
            <end position="56"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO17927.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="246" mass="26609" checksum="531999209B0CDFDE" modified="2015-11-11" version="1">MENTVTGNNSIAVHCKGLTKSYGSGSNQVHALCGVDLEVRTGELMMLVGPSGCGKTTLISVIAGVLDRDGGECLVFGYDFKQMNPPEKTRYRGRNIGFVFQMFNLIPALTAAENVAVPLIINGAKRREAVGRAREILCRVGLSDRTNAVPAELSGGQQQRVAIARAMLHNPKLIVCDEPTSALDHETGHKVMELLREVAVGIGRALIVVTHDARIFGFADRIAKMDDGRITSIENSRIDLSSNTRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ94</accession>
    <name>A0A0M2UQ94_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_03256</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000298">
        <property type="protein sequence ID" value="KKO18057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18057">
        <property type="protein sequence ID" value="KKO18057"/>
        <property type="gene ID" value="BROFUL_03256"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025662">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025943">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025944">
        <property type="entry name" value="Sigma_54_int_dom_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00158">
        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00675">
        <property type="entry name" value="SIGMA54_INTERACT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00676">
        <property type="entry name" value="SIGMA54_INTERACT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00688">
        <property type="entry name" value="SIGMA54_INTERACT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="8">
        <location>
            <begin position="5"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="7">
        <location>
            <begin position="144"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="6">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="466" mass="53082" checksum="8D9A54797F537B22" modified="2015-11-11" version="1">MFKPSVLIIDDEKAARYGMKKALLKDNYIVHEARDGADALQMIKTLRPALVLLDINMPQPDGMKTLEMINALQNPPLVVIVTAYGSEKIAVEAMKRGAYDYIAKPYEIDELRIIAKNAFERLVLQEENARLRLEIGRLEGMGELIGQSESMKAVFDRIEKVGTTDVTVLIQGESGSGKELVAREIHRRSKRRNEPLIIMNCAAVPETLIESELFGHEKGAFTGAAERRLGKFELANKGTIFLDEIGDMSASTQSKLLRVLQEQKFERLGGSETLTVDTRIISATHRDLEEEIEENRFREDLYYRIKVVSIKLPPLRHRKEDIPLLANHFLHSFSEKHQKRIASITPEAMKHLVSYDWPGNIRQLKNALESAVVLSNNEILDTSDLPEEIKLSGSSALPLKSIDYTLSFRDAKKILIENFERDFIQKKLEECDGNVSRTAEALDMHRQNLQQKIRELRIIKERNCHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQB6</accession>
    <name>A0A0M2UQB6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03225</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000295">
        <property type="protein sequence ID" value="KKO18077.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18077">
        <property type="protein sequence ID" value="KKO18077"/>
        <property type="gene ID" value="BROFUL_03225"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="22"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="385"/>
            <end position="405"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="425"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="269"/>
            <end position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18077.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="453" mass="51871" checksum="57EA4549DD9F4294" modified="2015-11-11" version="1">MSQLLDVLFDDLRSCKNKVNRLLGAGILFALIAHFYVIEPYFEYKEQEPKLKKSLEEKKFQFDQLTGQSERMINLGQNIRTSQANIENKIKSFPQHLREILSDLWNVFHSDSSSNTSGQSTHAQRSAPVQQSIDTQQLFANMPPNVQQSVSVKIGEFFLPSDITTFNDGVHWYIETWFHEVLSDIRKEIEEPIMQAKITSDMVGDIDLQKITQQGIMDIQRYIDRVEKENPNFWKSYSGPMGKVDVAQELRHEVKKSFGLLTEKTDVLVGRLKEAVRAQKEELDKMNNDMTKLQEGKDKLDSRLSSLESPFGRIPAELPDLIKVFPILMAGLLVSVTTTLQKNNSLYISFREEFRKNNSEIDYKNFQRQADCWFLPPYTSIFQPFVLGFCIAIIAGVFVRASLLVVSEPSLFTSLTGEPVTIRKNLFLCAYIMSGIVIIGCLWLIGKISMKRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQX0</accession>
    <name>A0A0M2UQX0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8 9">Chromosomal replication initiator protein DnaA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">dnaA</name>
        <name evidence="13" type="ORF">BROFUL_03268</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8 9">Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'-TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8 10">Belongs to the DnaA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000299">
        <property type="protein sequence ID" value="KKO18045.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18045">
        <property type="protein sequence ID" value="KKO18045"/>
        <property type="gene ID" value="BROFUL_03268"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003688">
        <property type="term" value="F:DNA replication origin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006270">
        <property type="term" value="P:DNA replication initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006275">
        <property type="term" value="P:regulation of DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06571">
        <property type="entry name" value="Bac_DnaA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1750.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00377">
        <property type="entry name" value="DnaA_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001957">
        <property type="entry name" value="Chromosome_initiator_DnaA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020591">
        <property type="entry name" value="Chromosome_initiator_DnaA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018312">
        <property type="entry name" value="Chromosome_initiator_DnaA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013317">
        <property type="entry name" value="DnaA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013159">
        <property type="entry name" value="DnaA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024633">
        <property type="entry name" value="DnaA_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038454">
        <property type="entry name" value="DnaA_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010921">
        <property type="entry name" value="Trp_repressor/repl_initiator"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30050:SF2">
        <property type="entry name" value="PTHR30050:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00308">
        <property type="entry name" value="Bac_DnaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08299">
        <property type="entry name" value="Bac_DnaA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11638">
        <property type="entry name" value="DnaA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00051">
        <property type="entry name" value="DNAA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00760">
        <property type="entry name" value="Bac_DnaA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48295">
        <property type="entry name" value="SSF48295"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00362">
        <property type="entry name" value="DnaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01008">
        <property type="entry name" value="DNAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 8 9" id="KW-0235">DNA replication</keyword>
    <keyword evidence="7 8 9" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5 8 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="11">
        <location>
            <begin position="143"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="domain" description="Bac_DnaA_C" evidence="12">
        <location>
            <begin position="353"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="151"/>
            <end position="158"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006583"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00377"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000577"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU004227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM00760"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO18045.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="448" mass="52004" checksum="D39FE24B00D3A202" modified="2015-11-11" version="1">MEFYTKVWDDVLQDIRERVGPLRFNLWFKNTRLESFNDNCVNIAVPNVFTQVWLQENFSNILRDGIGKLVNSKDLNIRFSIAQNGKGDQILPVDNSPVERKSEGNKAVSSLNRYLKLEDFVVGPNNRMAYTASLEIMKDKYPAFNPLFIHGPVGVGKTHILQGVWNRIREEQNVNSIYMPAEKWTNEFIYSLQKGKMEAFRQKFRNVDLFLIDDVHFLSNKQGVQEEFLHTFNALYELSKRIIFASDAHPKMIGQLKETLASRFMSGMIVKIDKPDYATRLLILRSKAASFDVHFPEEVLEFIAERFEDNVREVESALTTLSAHAKFNEKNIDIHLASDVLGEFFLAEGKIVKINEIEAAILSYFNISRNELHSSKKIKSISFPRQICMYLIKTLLNWSYQQIGNYFASKKHSTVMFAIKKVKEQIDTDKQFKVFIDTLIEKIRKEKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQZ6</accession>
    <name>A0A0M2UQZ6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Glycosylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_03241</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the Nth/MutY family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000296">
        <property type="protein sequence ID" value="KKO18070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18070">
        <property type="protein sequence ID" value="KKO18070"/>
        <property type="gene ID" value="BROFUL_03241"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3995"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016798">
        <property type="term" value="F:hydrolase activity, acting on glycosyl bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00056">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1670.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011257">
        <property type="entry name" value="DNA_glycosylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003265">
        <property type="entry name" value="HhH-GPD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023170">
        <property type="entry name" value="HhH_base_excis_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044298">
        <property type="entry name" value="MIG/MutY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42944">
        <property type="entry name" value="PTHR42944"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00730">
        <property type="entry name" value="HhH-GPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00478">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48150">
        <property type="entry name" value="SSF48150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5" id="KW-0234">DNA repair</keyword>
    <keyword evidence="6" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ENDO3c" evidence="7">
        <location>
            <begin position="81"/>
            <end position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008343"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="310" mass="36362" checksum="D3DE90FD14E619DB" modified="2015-11-11" version="1">MADYLLCDYNKKLMKSKSTRDPRKDKKKDCTSEPVCSGKRLTQAAVRKFREMIYRHYRRHGRSLPWRMTHNPYYILVSEIMLQQTQVQRVMGKYEPFIRAFPDFSSLARASLRTVLREWQGLGYNRRAIALKQIAQRVMKEFQGKLPSSVEVLITFPGIGEATAASIAAFAFHTPTVFIETNIRRVFIHGFFHDRTNIRDAEILPLVEQTLDTSHPREWYYALMDYGVMLKQKQVNPNRRSAHYQKQSPFHGSNRQVRGMILKALTAESYLSEQEIAQRLQIPFEKIKNNLDQLEKEGFIERKGNRMRVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR47</accession>
    <name>A0A0M2UR47_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Lipoprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_02964</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000279">
        <property type="protein sequence ID" value="KKO18342.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18342">
        <property type="protein sequence ID" value="KKO18342"/>
        <property type="gene ID" value="BROFUL_02964"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003838">
        <property type="entry name" value="ABC3_permease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025857">
        <property type="entry name" value="MacB_PCD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02687">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12704">
        <property type="entry name" value="MacB_PCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="16"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="277"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="323"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="386"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="domain" description="MacB_PCD" evidence="8">
        <location>
            <begin position="17"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="domain" description="FtsX" evidence="7">
        <location>
            <begin position="306"/>
            <end position="413"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF12704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18342.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="420" mass="46829" checksum="BDA808DFC719605D" modified="2015-11-11" version="1">MYKLFISLRYLRSRKISFFAIAGVAVGVMTLIVVLSVMNGFDQELRSRIRGTLAHIIILKGGMYGLEDHQHVMEKVKSFDHVVACAPYIEGPALIKLRNRREFVYFKGIDPHAESDVSDFRSYIAPFGNQPEDLLQVHGEKKTASVFGGSELFRLGPGEPEKDTGSFIQNGEQIVLVTLKEWDKISVKAFAVVGKFRSGMYDFDKNYVYIPLAVAQELTGSREKNAVSGISVKLDDYRFANEVRDQLQAALGLEYYVQTWEDARKTFLTAVMMERRVMALILFFILVVAGFNILAILTMIVLEKSKDIGILKALGTTTQGVMSIFLLHGLLIGSMGACLGVAAGLSIALRINWLENVLYNTTGWRPFPPEVYYFNQIPTVVSPTSILITAVIAVVSSVVFSIYPALRAARLDPVVTLRYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URQ9</accession>
    <name>A0A0M2URQ9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Putative heme protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_02538</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18758.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18758">
        <property type="protein sequence ID" value="KKO18758"/>
        <property type="gene ID" value="BROFUL_02538"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002327">
        <property type="entry name" value="Cyt_c_1A/1B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013427">
        <property type="entry name" value="Haem-bd_dom_put"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11961">
        <property type="entry name" value="PTHR11961"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00034">
        <property type="entry name" value="Cytochrom_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02603">
        <property type="entry name" value="CxxCH_TIGR02603"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 5" id="KW-0349">Heme</keyword>
    <keyword evidence="4 5" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="7">
        <location>
            <begin position="41"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="7">
        <location>
            <begin position="174"/>
            <end position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18758.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="316" mass="34248" checksum="9E38625E0685224D" modified="2015-11-11" version="1">MNKSMLKITAFGIAVIGFYIYITMYVAGLSGTGGGESAGGVSPEAGEKIFWGDGQCSTCHKIGTSGSATRGPDQEGLASRAEERAKELGLPSGLDYLVESIVDPDKYIVKGYDKIMPRVYDPPIMLSREKILAVLAYLQTLGGEPDLGALMKYKDKIPEASKKKVKPWVPPMVVDAKEGEKVFFDETRPVTCGKCHVVNGRGKKVGPELTGIGAIQTADYFVESVLKPSAKIVKGYETMYVITTDGIPYNGLIKSETDEELVLLKEESGEIEEVVIPKSDIAEMKKQEVSIMPGNIGELLSVKDFYGIVSFLQSLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US43</accession>
    <name>A0A0M2US43_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="11 12">ATP synthase subunit a</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">ATP synthase F0 sector subunit a</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">F-ATPase subunit 6</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">atpB</name>
        <name evidence="13" type="ORF">BROFUL_02848</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11 12">Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11 12">Cell membrane</location>
            <topology evidence="11 12">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 11 12">Belongs to the ATPase A chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000268">
        <property type="protein sequence ID" value="KKO18465.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18465">
        <property type="protein sequence ID" value="KKO18465"/>
        <property type="gene ID" value="BROFUL_02848"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3523"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045263">
        <property type="term" value="C:proton-transporting ATP synthase complex, coupling factor F(o)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01393">
        <property type="entry name" value="ATP_synth_a_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045082">
        <property type="entry name" value="ATP_syn_F0_a_bact/chloroplast"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000568">
        <property type="entry name" value="ATP_synth_F0_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023011">
        <property type="entry name" value="ATP_synth_F0_asu_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035908">
        <property type="entry name" value="F0_ATP_A_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42823">
        <property type="entry name" value="PTHR42823"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00119">
        <property type="entry name" value="ATP-synt_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00123">
        <property type="entry name" value="ATPASEA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81336">
        <property type="entry name" value="SSF81336"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01131">
        <property type="entry name" value="ATP_synt_6_or_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00449">
        <property type="entry name" value="ATPASE_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="11" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 11 12" id="KW-0138">CF(0)</keyword>
    <keyword evidence="6 11 12" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="8 11 12" id="KW-0406">Ion transport</keyword>
    <keyword evidence="9 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 11 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 11 12" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="34"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="91"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="119"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="193"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="217"/>
            <end position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022547"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01393"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU000483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO18465.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="251" mass="27717" checksum="0A9A2E3F5BEA406E" modified="2015-11-11" version="1">MSGEGELTTELPSFVDFAPLEAHGHYFGLTKHEWVPIIMSAVIIISLGLFAIIATMRLKKVPGRLQALLEIIVEGLENFTKTQMGRAAGPFIPFIGTLFLYIFAMNMIGQIPLFHSPTSNFNTTIALTLIVFFVTHYQGVKNNGVMGYLKHMAGKPIWLAPLVFPLHLMQELLSRPLSLSMRLFGNIMGEDTIIAIFIGLSPFLLGLIPVPMHLPMVFLALLGSTIQAMIFSLLASFYIAGAIGIHEEEHH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US76</accession>
    <name>A0A0M2US76_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Glyco_trans_2-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02315</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyltransferase 2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18923">
        <property type="protein sequence ID" value="KKO18923"/>
        <property type="gene ID" value="BROFUL_02315"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd04188">
        <property type="entry name" value="DPG_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035518">
        <property type="entry name" value="DPG_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="15"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006739"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="250" mass="28508" checksum="BBC54401E8B072F6" modified="2015-11-11" version="1">MISAFKEPMNECLLSIVIPAYNEEKRLLVTVSKVCAYLAQKGFSCEIIVVDDGSTDNTAQIIKEIAGQNDHVVVLTNDRNYGKGCAVRKGMLSAKGEYVFFSDADLSTPIEEIEKFLPYLFGDYDVVIGSRSMSDSEIAIHQPWYRERMGKTFNFIVNLVLLKGIVDTQCGFKGFKKEAAQKVFSKGIIDGFSFDVEVLYLSRKWNFKIKEIPIRWKNSSLSKVKPVRHSLQMLRDLFIIKIQDFKGQYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USB3</accession>
    <name>A0A0M2USB3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03441</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000314">
        <property type="protein sequence ID" value="KKO17876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17876">
        <property type="protein sequence ID" value="KKO17876"/>
        <property type="gene ID" value="BROFUL_03441"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038717">
        <property type="entry name" value="Tc1-like_DDE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025959">
        <property type="entry name" value="Winged_HTH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13358">
        <property type="entry name" value="DDE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13592">
        <property type="entry name" value="HTH_33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0814">Transposable element</keyword>
    <feature type="domain" description="HTH_33" evidence="3">
        <location>
            <begin position="96"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="domain" description="DDE_3" evidence="2">
        <location>
            <begin position="168"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO17876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="336" mass="39236" checksum="B2F545A64F54DE17" modified="2015-11-11" version="1">MKDDGRKLSREVLESYRIRAITLRDKMHYSVKEIGEIFGIKYESVSRWFSQYRRGGIEALKERKAKGKARIVNADDLRWLQSVLQNVATKYGFSTPLWTGTYVRILFRRERKVNLDRSTIWRYLVRLGLSFQKPEKRYSQQDMDLVKTWISKEWPEIQKWAQKNRAIIYFEDESGVSLAPVIGKTWAPIGETPVVRVTGKRGGVLAMSAISPSGRMCFRLEKRKVNAQVLMEFLNQISVQHPRRKVAVIMDQAPCHVAKRIKALNEGSSKLRVFHLPPYSPDLNPDEKVWRHMKHVTLKNHQAQDKKQLGRLVIGALRKIQKNPELTKKFFENYLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USC2</accession>
    <name>A0A0M2USC2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Putative transporter protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_02356</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18963.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18963">
        <property type="protein sequence ID" value="KKO18963"/>
        <property type="gene ID" value="BROFUL_02356"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005495">
        <property type="entry name" value="LptG/LptF_permease"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33529">
        <property type="entry name" value="PTHR33529"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03739">
        <property type="entry name" value="LptF_LptG"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="32"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="73"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="112"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="459"/>
            <end position="477"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="484"/>
            <end position="502"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="514"/>
            <end position="536"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="306"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="369"/>
            <end position="438"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18963.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="542" mass="61523" checksum="635B2FC9D9D2E84D" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USK5</accession>
    <name>A0A0M2USK5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Sulfurtransferase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02483</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18822">
        <property type="protein sequence ID" value="KKO18822"/>
        <property type="gene ID" value="BROFUL_02483"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3083"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004792">
        <property type="term" value="F:thiosulfate sulfurtransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.250.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036873">
        <property type="entry name" value="Rhodanese-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001307">
        <property type="entry name" value="Thiosulphate_STrfase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045078">
        <property type="entry name" value="TST/MPST-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11364">
        <property type="entry name" value="PTHR11364"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00581">
        <property type="entry name" value="Rhodanese"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00450">
        <property type="entry name" value="RHOD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52821">
        <property type="entry name" value="SSF52821"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00683">
        <property type="entry name" value="RHODANESE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Rhodanese" evidence="3">
        <location>
            <begin position="17"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="domain" description="Rhodanese" evidence="3">
        <location>
            <begin position="168"/>
            <end position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000507"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="285" mass="31567" checksum="2F03F66CF3F26672" modified="2015-11-11" version="1">MPYNTLIAVSELINHLANPGWTIIDCRFSLDDSERGHREYLDAHIPGAIYAHLSKDLSGHIISGKTGRHPLPEPKTFARTLSNWGIDDNVQVIAYDDKGGAMAAARLWWMLRWLGHDAVAVLNGGWPQWQKNNCPVAGGAETRKQRSFIPKIRNNFVFNSEDVLKILHNQNFRLIDSRSADRYRGENETIDPVAGHIPGALSIPFTGNLDADGLFLTSIDLKIRFQHVLGDTPPEHVVFYCGSGVTAAHNLLALAHAGFADARLYAGSWSEWITNPDNPITQGSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USL4</accession>
    <name>A0A0M2USL4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ATP-dependent protease peptidase subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02493</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase T1B family. HslV subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18832">
        <property type="protein sequence ID" value="KKO18832"/>
        <property type="gene ID" value="BROFUL_02493"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3096"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009376">
        <property type="term" value="C:HslUV protease complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005839">
        <property type="term" value="C:proteasome core complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004298">
        <property type="term" value="F:threonine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051603">
        <property type="term" value="P:proteolysis involved in protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022281">
        <property type="entry name" value="ATP-dep_Prtase_HsIV_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001353">
        <property type="entry name" value="Proteasome_sua/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023333">
        <property type="entry name" value="Proteasome_suB-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32194">
        <property type="entry name" value="PTHR32194"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00227">
        <property type="entry name" value="Proteasome"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03692">
        <property type="entry name" value="ATP_dep_HslV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51476">
        <property type="entry name" value="PROTEASOME_BETA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 5" id="KW-0645">Protease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0915">Sodium</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006053"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023053"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="116" mass="12632" checksum="43A6AE858BA49E25" modified="2015-11-11" version="1">MERFDAKLEQYQGNVLRSAHELAKEWRTDKVLRRLESLLVVVDKQYSFLISGGGDVIEPDDGVIGIGSGGAYAIAAARALLKHTSLSAKEIVEASLGIAADICVYTNKNIKVEEVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USM0</accession>
    <name>A0A0M2USM0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02244</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19063.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19063">
        <property type="protein sequence ID" value="KKO19063"/>
        <property type="gene ID" value="BROFUL_02244"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2800"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19063.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="547" mass="63911" checksum="6E29393BEE5AF496" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USZ1</accession>
    <name>A0A0M2USZ1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter permease component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_02360</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18967.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18967">
        <property type="protein sequence ID" value="KKO18967"/>
        <property type="gene ID" value="BROFUL_02360"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2930"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010065">
        <property type="entry name" value="AA_ABC_transptr_permease_3TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043429">
        <property type="entry name" value="ArtM/GltK/GlnP/TcyL/YhdX-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30614">
        <property type="entry name" value="PTHR30614"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01726">
        <property type="entry name" value="HEQRo_perm_3TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="35"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="97"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="193"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="7">
        <location>
            <begin position="35"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18967.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="236" mass="25974" checksum="9C9B8265ABD182DF" modified="2015-11-11" version="1">MHEGLLQKYTERPPVVAERAPLAAVKFLPTLLKGALVTIGISLLSMMLAVLLGLILAMMRCYGNRWLQKASTAYIEMYRGTPLLIQLYILYYGLPNVGISLGAFAVAILGLGMNYAAYEAEIYRAGMQAIPRGQTEAALSLGMSGRLTLRRIILPQALRIAIPSMTNDFIALFKDSSLVSVVAITELTKSYGILAAASMDFFTLGIITALLYFGMSYPLSLYARKLEKRLKLHDRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT06</accession>
    <name>A0A0M2UT06_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Amino_oxidase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02276</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO18982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18982">
        <property type="protein sequence ID" value="KKO18982"/>
        <property type="gene ID" value="BROFUL_02276"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002937">
        <property type="entry name" value="Amino_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01593">
        <property type="entry name" value="Amino_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amino_oxidase" evidence="1">
        <location>
            <begin position="2"/>
            <end position="257"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="417" mass="46408" checksum="C45B47721E234256" modified="2015-11-11" version="1">MSRGLKILLVEKNVNPGGYLSSFKRGDFIFDSAVDCFSGIEKGGLISNVLKLLDVDSQVHFVRVDPIRVSMFPNLKVSVDSDINTYMDKLMAIFPSEAAAIRGFFKRASMVYDELQIAINKLISGEFELNIISPNILKLMYSSYEELLVEYITDYRLKAVLSDRCTFVGLPPSKASAFSMIALMMSYFKFGAYRPVGGFQKLANVFVDGIRKNGGKAIFGTEAKQIILDKQNYCTGVKCDNGDEYTTRYIISNADFNHTFRSIMGGKYSSFARDMTENIGSSTSFFIVYAGIMGDAGKYSSIGYYPSYDMEGFFSPDKTFKEDTTIGITIASIEDKSRVPADCNTIVLHEMADGSRWDCVDKSKCTGAVLKKAESIIPDIMDRIVVLDSATPQTLQRYTGNYHALHLAGDRRRCSRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT72</accession>
    <name>A0A0M2UT72_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Glycoside hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02476</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the glycosyl hydrolase 57 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18815.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18815">
        <property type="protein sequence ID" value="KKO18815"/>
        <property type="gene ID" value="BROFUL_02476"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3075"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003844">
        <property type="term" value="F:1,4-alpha-glucan branching enzyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030979">
        <property type="term" value="P:alpha-glucan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037090">
        <property type="entry name" value="57_glycoside_trans_central"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015293">
        <property type="entry name" value="BE_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040042">
        <property type="entry name" value="Branching_enz_MT3115-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011330">
        <property type="entry name" value="Glyco_hydro/deAcase_b/a-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027291">
        <property type="entry name" value="Glyco_hydro_38_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028995">
        <property type="entry name" value="Glyco_hydro_57/38_cen_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004300">
        <property type="entry name" value="Glyco_hydro_57_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR41695">
        <property type="entry name" value="PTHR41695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09210">
        <property type="entry name" value="DUF1957"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03065">
        <property type="entry name" value="Glyco_hydro_57"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88688">
        <property type="entry name" value="SSF88688"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88713">
        <property type="entry name" value="SSF88713"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_hydro_57" evidence="3">
        <location>
            <begin position="2"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1957" evidence="4">
        <location>
            <begin position="419"/>
            <end position="521"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU361196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF09210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18815.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="522" mass="61450" checksum="A1654D9C287BA16D" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT90</accession>
    <name>A0A0M2UT90_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Metallo cofactor biosynthesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_03099</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000286">
        <property type="protein sequence ID" value="KKO18201.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18201">
        <property type="protein sequence ID" value="KKO18201"/>
        <property type="gene ID" value="BROFUL_03099"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3827"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="5">
        <location>
            <begin position="18"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18201.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="377" mass="42326" checksum="7B7B412E5B64EA13" modified="2015-11-11" version="1">MENRTAEKHQPDNLSEFLTRTGNLLIHLLNQCNLSCEHCYLDASSGGDSALPLDLVKRTLDEAHDLGIQSVQFSGGEPFLYPHLLEVLSETKGKNFQVVLSTNGTLFDDKAIDLLAETRASVVTSIDGPAAYHDLFRGKKGSFAKTESGIARLVDRGVKVRIVTTVSEDSFQHIDWCAEWAYKMKAGILQFQPLEGIGRGRNIAHKRLSEDRLHDLFLHLNDLAVSYASKGLHIKMTYQSRDYMVTHPCSAFVCNGTDCHRGVDKELKKIVIREDGSILPELVDIDRQFSIGNLHNDTLKNNLILYLREKYSLFDQLCREVYGDTVPKYSSPLIPWNEILTERSRLFKPAKEGEEGKQLPLEVGCCSDTSLQEGLKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTN7</accession>
    <name>A0A0M2UTN7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Putative C4-dicarboxylate transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_02368</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18975">
        <property type="protein sequence ID" value="KKO18975"/>
        <property type="gene ID" value="BROFUL_02368"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2942"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004695">
        <property type="entry name" value="SLAC1/Mae1/Ssu1/TehA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038665">
        <property type="entry name" value="Voltage-dep_anion_channel_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03595">
        <property type="entry name" value="SLAC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="75"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="101"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="139"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="167"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="201"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="236"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="271"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="313"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="345"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="378"/>
            <end position="401"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="425" mass="48105" checksum="CAC12A4DCBFE67D4" modified="2015-11-11" version="1">MKYLIPEKSARRQFRKVAIAHGIKKSDTAEIKGCKIFFISDIIAEIIVPYYKSLTRRDDTQKGVIKNTIKTFHPAYFAMVMSTGIISIASHLLGFTAISRGLFYLNIIAYIIILSLQILRVKMYWNNLYADLSNPTISLVFFTTVAATNVLGSQFVTIVNYPEVAKAFWYFGILLWSMVSLATFSILFIKCEQKIELVLHGGWLTATVGTQSVAVFGAILAPKFGAGAGFVMFSSFVWWMIGSFLYVVLITLIMFRLVFFKISPDALVPPYWINMGALAITTLAGSAICINIPKVKGHYADLLGFTKGITLFFWSFGTWWIPFLIIVGIWKYLFHKTQFKYNPLYWAMVFPLGMYTASTMRLSQAIRIPFIAHISKYFIYAAYIAWIFIFIQMIISIIKAATAKEAPKMKEEKALQPQMAGIAKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTN9</accession>
    <name>A0A0M2UTN9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Cobalt ABC transporter ATP-binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02118</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000212">
        <property type="protein sequence ID" value="KKO19177.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19177">
        <property type="protein sequence ID" value="KKO19177"/>
        <property type="gene ID" value="BROFUL_02118"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03225">
        <property type="entry name" value="ABC_cobalt_CbiO_domain1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015856">
        <property type="entry name" value="ABC_transpr_CbiO/EcfA_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="5"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="38"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19177.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="240" mass="27037" checksum="04AD0AA53C92FD30" modified="2015-11-11" version="1">MSCVVRARKISFRYENGGLALSDLSLSVHQREKVGVIGPSGAGKTTFFWHLNGLLKPVSGGIEVLERPLAEHKNISEVRRHVALTFQQVNDQLFCSSVREEIAFGPRNLGWPKPEIQEAVERWLAYFELNEVSHRPPHHLSGGQKRSVALAAAMAMKPQLLILDEPANDLDHRNRRRLITYLKGLPIAMMIASHDLSLISEVTQRCVLMDKGTVVADRSTDELVFDQSMLQQYGMEAMRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTP2</accession>
    <name>A0A0M2UTP2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative 1-acyl-sn-glycerol-3-phosphate acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02274</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO18980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18980">
        <property type="protein sequence ID" value="KKO18980"/>
        <property type="gene ID" value="BROFUL_02274"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002123">
        <property type="entry name" value="Plipid/glycerol_acylTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01553">
        <property type="entry name" value="Acyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00563">
        <property type="entry name" value="PlsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="domain" description="PlsC" evidence="2">
        <location>
            <begin position="46"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="212" mass="24003" checksum="EA14175530E76152" modified="2015-11-11" version="1">MAISIKEGFKLLVYRYIPYCFLYPFFVVFGRLEVKGIEHIPIKGGIIIASNHLSYIDPPLLATILPRRCNFMAKHELFDIPILKYIIRYYAFPINRQKPRVSAIKTAIHKLCNGEIVVIFPEGSRNIGTTFLPPKNGIGMVALLSKMNVVPTLIEGTDNLFPPGKFIPRPAKIRITFCKPLDPVLEDTDYRVISRKIMSHITQMTATKTLGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTR4</accession>
    <name>A0A0M2UTR4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02930</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000275">
        <property type="protein sequence ID" value="KKO18376.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18376">
        <property type="protein sequence ID" value="KKO18376"/>
        <property type="gene ID" value="BROFUL_02930"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035069">
        <property type="entry name" value="TTHA1013/TTHA0281-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143100">
        <property type="entry name" value="SSF143100"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18376.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="66" mass="7719" checksum="B2D826F0A4BE938B" modified="2015-11-11" version="1">MRTFTVEIEKDEKFYIAQCVEHSNCFTQGKTIEEAIHNIKEVIDLILHIKRPKLHIILKDSLVNAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTS8</accession>
    <name>A0A0M2UTS8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02061</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the OprB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000208">
        <property type="protein sequence ID" value="KKO19217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19217">
        <property type="protein sequence ID" value="KKO19217"/>
        <property type="gene ID" value="BROFUL_02061"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038673">
        <property type="entry name" value="OprB_sf"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644002" evidence="2">
        <location>
            <begin position="28"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="174" mass="19029" checksum="3284BF8E6519E749" modified="2015-11-11" version="1">MVMNIFWKSWGTLALLLTMMGLSGARAEEIQSVADTPKENVHGSVKATSQPGGEMPRLVPWLDYTGGLWHSAGLTGDWGGARQQLMDKGIRFDVSLIQTLQGNWAGGTDYDYPYQGNMRYGIQLDTGKAGLWPGGLLVARGETRYGNSNNLNTGALLPVNTASLYLCRRMMSLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTS9</accession>
    <name>A0A0M2UTS9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02309</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO19015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19015">
        <property type="protein sequence ID" value="KKO19015"/>
        <property type="gene ID" value="BROFUL_02309"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004509">
        <property type="entry name" value="Competence_ComEA_HhH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010994">
        <property type="entry name" value="RuvA_2-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47781">
        <property type="entry name" value="SSF47781"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00426">
        <property type="entry name" value="TIGR00426"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="148" mass="16553" checksum="6A84B2B164DAA321" modified="2015-11-11" version="1">MWNASRALKNLVIMTIPQRPFDGSSPTKRQLIVIYFLATTLFIATIIKIGMDYHWWLPETEIVSTLKPEDIKVKLDVNTSPWYELVLLPKLGEAKAKAIVAYREKHGNFKTLDELNKVKGIGASITEAISDHLIIGSATAGADMDNQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTW8</accession>
    <name>A0A0M2UTW8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03375</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17924">
        <property type="protein sequence ID" value="KKO17924"/>
        <property type="gene ID" value="BROFUL_03375"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4151"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="265" mass="30714" checksum="5C6975FAED749D49" modified="2015-11-11" version="1">MNEQLILLPSLLNVVRKSGLTLAPEAATQTLRRIINKDITDEDLCKGVGEAFKQGWNLVKLYFMVGLPTETDDDIDAIARLAYKVSELKKEISGNFGQVNISIAPFVPKAHTPFQWHPMVTLQRIKEIRNRLFDRIRRKCIRIKFHNAERSILEGIFARGDRRLGKVIYQAWQDGCKFDAWEEHFHFQKWMEAFQKAGVDWAFYVHRQRGDDEVFPWDHISCGVVKPFLVQERQRSFHEEVTPDCRTDVCPECGSCARSQNFCAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU64</accession>
    <name>A0A0M2UU64_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03302</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000301">
        <property type="protein sequence ID" value="KKO18024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18024">
        <property type="protein sequence ID" value="KKO18024"/>
        <property type="gene ID" value="BROFUL_03302"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019867">
        <property type="term" value="C:outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043165">
        <property type="term" value="P:Gram-negative-bacterium-type cell outer membrane assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007485">
        <property type="entry name" value="LPS_assembly_LptE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04390">
        <property type="entry name" value="LptE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="77"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="237" mass="26908" checksum="7557F494E37CBBD4" modified="2015-11-11" version="1">MRLSGRHIPSGIILYDTMVHHRYHARLSRNKRVVTKETRGVADRLSSLSSLRCGKTGGRKDLFPGKMFFQRNRSTSIVCLTVVMFFIAAVVGCGYSSRSLLRSNVRSIYVPIFDNNTFRRGYEFDLTKAVRDQILLRTRLRVVDKDEADSILFGKITSFNEGVTIENRNDNIIESRTSVGIEIQWVDKRTGRAIVPRKNISKAAEFIVPRNETLTSSGTEAFVNVARGIVDAMEEDW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUJ9</accession>
    <name>A0A0M2UUJ9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">TRANSKETOLASE_1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02612</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18661.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18661">
        <property type="protein sequence ID" value="KKO18661"/>
        <property type="gene ID" value="BROFUL_02612"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3239"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd02012">
        <property type="entry name" value="TPP_TK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005474">
        <property type="entry name" value="Transketolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00456">
        <property type="entry name" value="Transketolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TRANSKETOLASE_1" evidence="1">
        <location>
            <begin position="9"/>
            <end position="260"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18661.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="273" mass="31100" checksum="0BE3FC2AEB7FB35E" modified="2015-11-11" version="1">MVNDRLSKKANQIRRDLIEIAIQNGAGHIAPSLSCVDILVALYYRIMKLPPCSSWEERDRLVFSKAHGCYGLYSILADKGFIQRRDWKNFYQGSFLSGCLERCVENGLEASCGSLGHGLPMAVGIAFGAQLQKKRYRVYCIVGDGEMQEGSNWEAIQFAAKYKLSNLTVIIDHNTLQAMDFLKNVLTMEERRDDLQRKMKAFGFETKTCSGHNIKDISSLIEKWIKNQKNLVAPQVLIARTTKGYGLKCMENVPKFHFRIPTEDELKMGNRYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUM5</accession>
    <name>A0A0M2UUM5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Rhodanese domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03137</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000287">
        <property type="protein sequence ID" value="KKO18184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18184">
        <property type="protein sequence ID" value="KKO18184"/>
        <property type="gene ID" value="BROFUL_03137"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016788">
        <property type="term" value="F:hydrolase activity, acting on ester bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050313">
        <property type="term" value="F:sulfur dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07724">
        <property type="entry name" value="POD-like_MBL-fold"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.250.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044528">
        <property type="entry name" value="POD-like_MBL-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036873">
        <property type="entry name" value="Rhodanese-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00581">
        <property type="entry name" value="Rhodanese"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00450">
        <property type="entry name" value="RHOD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52821">
        <property type="entry name" value="SSF52821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rhodanese" evidence="1">
        <location>
            <begin position="270"/>
            <end position="358"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="361" mass="39768" checksum="C7CF7F3246C11DB1" modified="2015-11-11" version="1">MIFKQLNKIACKTYLVGSEATKEVIIVDPVLPQVNEYVSLLKDEGLKLTHVLDTHTHADHLSGAGALVDHTGAVYVMHQNSPVRCVGFRVPDGFDCHLSDMPVKVMHAPGHTKDSMCLIFPDRILTGDTLFLDDGGAGRTDLPGGDAGEHWESLQKIMKLPDHLVVYPAHEYRGREPSSLGEQKKRNPNLQSRPKEAYIKWLTDMKLGPADWMNDVLKANYACTRDPSATHIPTDTPSCEMKGTMSPDLMEQQVPTITIAEVRRRLGTKQLDGTVILDVREPAELKGELGVIPGALNIPVGQVAQRLKELEKFKEKEIVTICRSGARAHTAAALLLKAGFRKVLNMSGGMTAFRKAEKTPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUW1</accession>
    <name>A0A0M2UUW1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Cupin type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01872</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000194">
        <property type="protein sequence ID" value="KKO19410.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19410">
        <property type="protein sequence ID" value="KKO19410"/>
        <property type="gene ID" value="BROFUL_01872"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006045">
        <property type="entry name" value="Cupin_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013096">
        <property type="entry name" value="Cupin_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018649">
        <property type="entry name" value="SHOCT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07883">
        <property type="entry name" value="Cupin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09851">
        <property type="entry name" value="SHOCT"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SMART" id="SM00835">
        <property type="entry name" value="Cupin_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cupin type-1" evidence="2">
        <location>
            <begin position="55"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="161"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="333"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="386"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="441"/>
            <end position="478"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="176"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="241"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="463"/>
            <end position="478"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19410.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="552" mass="62642" checksum="9B38AA5819865506" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV62</accession>
    <name>A0A0M2UV62_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">4-hydroxy-3-methylbut-2-enyl diphosphate reductase</fullName>
            <shortName evidence="8">HMBPP reductase</shortName>
            <ecNumber evidence="8">1.17.7.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">ispH</name>
        <name evidence="10" type="ORF">BROFUL_02427</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>H2O + isopentenyl diphosphate + 2 oxidized [2Fe-2S]-[ferredoxin] = (2E)-4-hydroxy-3-methylbut-2-enyl diphosphate + 2 H(+) + 2 reduced [2Fe-2S]-[ferredoxin]</text>
            <dbReference type="Rhea" id="RHEA:24488"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:128753"/>
            <dbReference type="ChEBI" id="CHEBI:128769"/>
            <dbReference type="EC" id="1.17.7.4"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>dimethylallyl diphosphate + H2O + 2 oxidized [2Fe-2S]-[ferredoxin] = (2E)-4-hydroxy-3-methylbut-2-enyl diphosphate + 2 H(+) + 2 reduced [2Fe-2S]-[ferredoxin]</text>
            <dbReference type="Rhea" id="RHEA:24825"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:57623"/>
            <dbReference type="ChEBI" id="CHEBI:128753"/>
            <dbReference type="EC" id="1.17.7.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="8">Binds 1 [4Fe-4S] cluster per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="8">Isoprenoid biosynthesis; dimethylallyl diphosphate biosynthesis; dimethylallyl diphosphate from (2E)-4-hydroxy-3-methylbutenyl diphosphate: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="8">Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 6/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the IspH family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.17.7.4" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000231">
        <property type="protein sequence ID" value="KKO18881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18881">
        <property type="protein sequence ID" value="KKO18881"/>
        <property type="gene ID" value="BROFUL_02427"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00056">
        <property type="reaction ID" value="UER00097"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00059">
        <property type="reaction ID" value="UER00105"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051745">
        <property type="term" value="F:4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016765">
        <property type="term" value="F:transferase activity, transferring alkyl or aryl (other than methyl) groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050992">
        <property type="term" value="P:dimethylallyl diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019288">
        <property type="term" value="P:isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd13944">
        <property type="entry name" value="lytB_ispH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00191">
        <property type="entry name" value="IspH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003451">
        <property type="entry name" value="LytB/IspH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000537">
        <property type="entry name" value="UbiA_prenyltransferase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30426">
        <property type="entry name" value="PTHR30426"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02401">
        <property type="entry name" value="LYTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01040">
        <property type="entry name" value="UbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00216">
        <property type="entry name" value="ispH_lytB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 8" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5 8" id="KW-0408">Iron</keyword>
    <keyword evidence="6 8" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="8" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="328"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="359"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="401"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="424"/>
            <end position="444"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="465"/>
            <end position="482"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="488"/>
            <end position="509"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="537"/>
            <end position="555"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="561"/>
            <end position="580"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="589"/>
            <end position="609"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8">
        <location>
            <begin position="253"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="8">
        <location>
            <position position="161"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="46"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="77"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="109"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="131"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="197"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="225"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="297"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO18881.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="614" mass="68119" checksum="2CA9F6E0473207D5" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV90</accession>
    <name>A0A0M2UV90_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ATP-dependent Clp protease ATP-binding subunit ClpX</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">clpX</name>
        <name evidence="9" type="ORF">BROFUL_02925</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Component of the ClpX-ClpP complex. Forms a hexameric ring that, in the presence of ATP, binds to fourteen ClpP subunits assembled into a disk-like structure with a central cavity, resembling the structure of eukaryotic proteasomes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6 7">Belongs to the ClpX chaperone family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18419">
        <property type="protein sequence ID" value="KKO18419"/>
        <property type="gene ID" value="BROFUL_02925"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3619"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.20.220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00175">
        <property type="entry name" value="ClpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019489">
        <property type="entry name" value="Clp_ATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004487">
        <property type="entry name" value="Clp_protease_ATP-bd_su_ClpX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046425">
        <property type="entry name" value="ClpX_bact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010603">
        <property type="entry name" value="Znf_CppX_C4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038366">
        <property type="entry name" value="Znf_CppX_C4_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07724">
        <property type="entry name" value="AAA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10431">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06689">
        <property type="entry name" value="zf-C4_ClpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01086">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00994">
        <property type="entry name" value="zf-C4_ClpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00382">
        <property type="entry name" value="clpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51902">
        <property type="entry name" value="CLPX_ZB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 6 7" id="KW-0143">Chaperone</keyword>
    <keyword evidence="9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 6 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6 7" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="ClpX-type ZB" evidence="8">
        <location>
            <begin position="1"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="12"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="15"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="35"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="38"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="117"/>
            <end position="124"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01250"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="413" mass="46059" checksum="D095CC050EDA1231" modified="2015-11-11" version="1">MAKKAAGTKKSCSFCGRNYDAVSRLIQGDADTYICNECVDACHLLLKKDQKHIPSKPIGKIPTPPQIKEHLDEYIIGQEKAKKTLAVAVYNHYKRLITRTSSEGVEIEKSNILLIGPTGSGKTLLARTLAKILDVPFTIADATTLTEAGYVGEDVENVLLGLLRNADFNLQRAQQGIIYIDEIDKIARKSTNPSITRDVSGEGVQQALLKMLEGTISNIPPQGGRKHPEQQYIQMDTRDILFICGGTFTGIEEIIRRRIGKTNIGFDSGKEDKQDESFADILGKIEVEDIIDYGMIVEFVGRLPIIAPLMPLTQDDLVKVMTEPKNSLVKQYQKFFEMEETRLEFTHEALREISKKALEKKTGARALRAIFESFMLDAMYHLPSQKGDSSFLVTPEVVHGKTPLLAQKYKKTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV97</accession>
    <name>A0A0M2UV97_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_02374</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000227">
        <property type="protein sequence ID" value="KKO18916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18916">
        <property type="protein sequence ID" value="KKO18916"/>
        <property type="gene ID" value="BROFUL_02374"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008171">
        <property type="term" value="F:O-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031725">
        <property type="entry name" value="ASMT_dimerisation"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016461">
        <property type="entry name" value="COMT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001077">
        <property type="entry name" value="O_MeTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11746">
        <property type="entry name" value="PTHR11746"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16864">
        <property type="entry name" value="Dimerisation2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00891">
        <property type="entry name" value="Methyltransf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005739">
        <property type="entry name" value="O-mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51683">
        <property type="entry name" value="SAM_OMT_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Dimerisation2" evidence="5">
        <location>
            <begin position="15"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="domain" description="Methyltransf_2" evidence="4">
        <location>
            <begin position="114"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="3">
        <location>
            <begin position="230"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2 3">
        <location>
            <position position="251"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="204"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR005739-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00891"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF16864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="343" mass="38351" checksum="A2DACDF85D7DE354" modified="2015-11-11" version="1">MSDLETKKQGGLGYLLDLASSYYKSKVLFVSTDLGIFSVLLRARKDVQTIAREIKLERRPVEMLLNACVSLGLLEKKEGLYSNSSTAEMFLVKGKPMYVGEAFQVLDRRSYKLWDRLKEAVKTNTPQAYLEGKGDLFEEMTKNKEEMHAFFRGLHALAYWPASSLARIFDFTPYRHLLDVGGGSGAYSIALVKRHAHLNATILDLPPVCKIAQENIAKENLSHRISTLPGDFFKGDFPKGVDIILFSNLLHDWEEKKIEHLLKKTFEVLPSKGGVIISDMVLSNDGTEPLYAALMSLTLLLDTHGGSNYTEEQYTRWLDGAGFREISVKPLSGPNGIVTGTKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV99</accession>
    <name>A0A0M2UV99_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01252</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO19983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19983">
        <property type="protein sequence ID" value="KKO19983"/>
        <property type="gene ID" value="BROFUL_01252"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="30"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="94" mass="10337" checksum="CF6DC0B6484729C6" modified="2015-11-11" version="1">MIKYLQKAFTGLSIMKPPFLQKPIIERGNGFTVLDIISAIASFIIGFFAAKGMIAIAMTDNTCSKGITATTTLVKDKPEVYATSHSCPYRCHYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVC4</accession>
    <name>A0A0M2UVC4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Ribosome-binding ATPase YchF</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">ychF</name>
        <name evidence="7" type="ORF">BROFUL_01279</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. YchF/OLA1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20008">
        <property type="protein sequence ID" value="KKO20008"/>
        <property type="gene ID" value="BROFUL_01279"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1581"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043023">
        <property type="term" value="F:ribosomal large subunit binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04867">
        <property type="entry name" value="TGS_YchF_OLA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01900">
        <property type="entry name" value="YchF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00944">
        <property type="entry name" value="YchF_OLA1_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004396">
        <property type="entry name" value="ATPase_YchF/OLA1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031167">
        <property type="entry name" value="G_OBG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004095">
        <property type="entry name" value="TGS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012676">
        <property type="entry name" value="TGS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023192">
        <property type="entry name" value="TGS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013029">
        <property type="entry name" value="YchF_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041706">
        <property type="entry name" value="YchF_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06071">
        <property type="entry name" value="YchF-GTPase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006641">
        <property type="entry name" value="CHP00092"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00326">
        <property type="entry name" value="GTP1OBG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81271">
        <property type="entry name" value="SSF81271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00092">
        <property type="entry name" value="TIGR00092"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51710">
        <property type="entry name" value="G_OBG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51880">
        <property type="entry name" value="TGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OBG-type G" evidence="5">
        <location>
            <begin position="3"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="domain" description="TGS" evidence="6">
        <location>
            <begin position="277"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="12"/>
            <end position="17"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00944"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51710"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="362" mass="40323" checksum="BF802B7BF640A156" modified="2015-11-11" version="1">MGLNCGIVGLPNVGKSTIFNALTSAKAASANYPFCTIDPNVGIVTVPDQRLDKIAELITTEKIVPTTVEFVDIAGLVKGASQGEGLGNQFLGHIKSVNAVLHVVRCFEKSDIVHVEGGINPIRDIEIINTELILADLETVEKRLMKNEKLTKTGDKNIIASVTTLKKIRDALNNSIPVRLAGQTDEERKHIDDLHLLTAKPVLYVINVFDYEKDKPFIDTVINYSLKENSKCVVISGDIEAEISQMEPAERKTYYQEMEIEESGLERLIRETYHLLGLITYFTAGPKEIKAWTIKQGTKAPQAAGVIHSDFERGFICAETYNYHDLISVGSEQKVKEKGFLRLEGKEYIVKDGDIMHFRFNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVF9</accession>
    <name>A0A0M2UVF9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01736</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000180">
        <property type="protein sequence ID" value="KKO19565.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19565">
        <property type="protein sequence ID" value="KKO19565"/>
        <property type="gene ID" value="BROFUL_01736"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19565.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="174" mass="20389" checksum="3BA96741A6E9227F" modified="2015-11-11" version="1">MNEHSPSRTNNDSPANSMNIVDMLNQMGISDPRLQMLAEFMKHQNPPQDKRIPAEEEKIKLKRIIGRYKQLKHENMVLMEKNDALASASARVRTVGGKTWGVKYVMEKVFRVRMSRTQAPSLNMCFRRFANSAYLGGRSKAFRRIQARRRRSMLKVSIRTLTKRRCNYAVFRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVH4</accession>
    <name>A0A0M2UVH4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acyl carrier protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02280</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO18986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18986">
        <property type="protein sequence ID" value="KKO18986"/>
        <property type="gene ID" value="BROFUL_02280"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1200.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036736">
        <property type="entry name" value="ACP-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009081">
        <property type="entry name" value="PP-bd_ACP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00550">
        <property type="entry name" value="PP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47336">
        <property type="entry name" value="SSF47336"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50075">
        <property type="entry name" value="CARRIER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0596">Phosphopantetheine</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Carrier" evidence="2">
        <location>
            <begin position="1"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="modified residue" description="O-(pantetheine 4'-phosphoryl)serine" evidence="1">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00258"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="83" mass="9213" checksum="B20963B3D7D30301" modified="2015-11-11" version="1">MSDTILKLKDLLITRLKLKVKADGIQEDTPLFGPNSLGLDSIDVLELIIGIKKTFGVEIPDKETAEKIFITVGAIAQYIEEKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVJ0</accession>
    <name>A0A0M2UVJ0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02295</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO19001.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19001">
        <property type="protein sequence ID" value="KKO19001"/>
        <property type="gene ID" value="BROFUL_02295"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19001.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="190" mass="21645" checksum="9D70DD700CE92358" modified="2015-11-11" version="1">MLSKYRLWCLLCMLVFIVSCAGSSGYMRSSQTLLNPIQDKALVRFMRPSGFGCAINFNMLDGEKVIGNSVAKSQFDYLADPGKHLFVATAENKAFLEAELEAGKTYYVITRVYIGAWTARVAFLPVNKGSEFWDKVLKYENTLQKLQPDINALKTWEDANKAKIQKVLSAYETEWKDKYSWPKLMPEDGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVJ8</accession>
    <name>A0A0M2UVJ8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01416</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000146">
        <property type="protein sequence ID" value="KKO19857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19857">
        <property type="protein sequence ID" value="KKO19857"/>
        <property type="gene ID" value="BROFUL_01416"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032836">
        <property type="entry name" value="DsrE2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027396">
        <property type="entry name" value="DsrEFH-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13686">
        <property type="entry name" value="DrsE_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75169">
        <property type="entry name" value="SSF75169"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="137" mass="15690" checksum="8FAAC423FC61AF2F" modified="2015-11-11" version="1">METEKKGLSIIFHSGSYDRMYHGFSLVLVALALGREVRCFFTYWALQYLIKGKSVFQLNEEGQAHRKLLEEHMRKGHFQEISELLTQAKAMGAKFYACTNSMGLLNISRDELVNEVDKSMGLTTFLTETGQDQILFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVM0</accession>
    <name>A0A0M2UVM0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Lipopolysaccharide kinase (Kdo/WaaP) family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01713</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000176">
        <property type="protein sequence ID" value="KKO19605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19605">
        <property type="protein sequence ID" value="KKO19605"/>
        <property type="gene ID" value="BROFUL_01713"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="324" mass="37499" checksum="97678E0FDC75DBA8" modified="2015-11-11" version="1">MRKFGCLAKKMHEAGIQQDAFSLDNFLVYDENGSKKIIVIDFEMVSVRPKSLPVKLCFWYLAKLNREKGNFTNTERIRFLLSYMSYDYAQWKIVAKHIESMTVQIQKIGAKKVSRLCVRRNKKFGVFKSVRFHGFYRRTYSKETLENALHTMEETGKDEISVNHLKILRLTQNSPSGSGNRSLKQLWISANILFALKIDVPVPVGVFKRRLSNGRKKGFLISGMPDNCIPLSQCHDLFSDQKLLFSLARLAEQVSPFGVLSKDLSCQDILVRTQGNRTRCYLANYYSFSINRLPGETNKPVNMQTIRNLFQTHQQINDPRRKRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVM2</accession>
    <name>A0A0M2UVM2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">NADH oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02747</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the N-terminal section; belongs to the NADH:flavin oxidoreductase/NADH oxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000256">
        <property type="protein sequence ID" value="KKO18559.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18559">
        <property type="protein sequence ID" value="KKO18559"/>
        <property type="gene ID" value="BROFUL_02747"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001155">
        <property type="entry name" value="OxRdtase_FMN_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00724">
        <property type="entry name" value="Oxidored_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Oxidored_FMN" evidence="2">
        <location>
            <begin position="6"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="domain" description="Pyr_redox_2" evidence="3">
        <location>
            <begin position="381"/>
            <end position="569"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18559.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="641" mass="69981" checksum="22317B78B14C17FE" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVM5</accession>
    <name>A0A0M2UVM5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Dimer_Tnp_Tn5 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01388</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000144">
        <property type="protein sequence ID" value="KKO19897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19897">
        <property type="protein sequence ID" value="KKO19897"/>
        <property type="gene ID" value="BROFUL_01388"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.740.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003201">
        <property type="entry name" value="Transposase_Tn5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014737">
        <property type="entry name" value="Transposase_Tn5-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02281">
        <property type="entry name" value="Dimer_Tnp_Tn5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Dimer_Tnp_Tn5" evidence="1">
        <location>
            <begin position="190"/>
            <end position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19897.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="292" mass="33927" checksum="FBE35D39C06E3DAB" modified="2015-11-11" version="1">MVKESASAARAVKEASGVDWVSVGDREADICELFELASHEEVSFLVRSFHNRRVCEDTKVWEVVDREAPVGRMRVFVKEKDKRERVAELEIRFREVRIRHPKKEKEEVRLWAIRAKEVSPPKGEEGLDWKLLTNREVRDFEQACEKVQWYTVRFRIEVFHKILKRGRRSEDRRLGSLDRLERCLTIDMITAWRLMYLTMLGRETPEVASDLLFSEQEVEVLKLIKYRGEYAANKGRSLSLREAILIIAPLGGFVKGKGREPGVEVMWRGIRRLADILIGVSLTTSIPQFDSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVR6</accession>
    <name>A0A0M2UVR6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Small multidrug resistance protein SugE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">sugE_1</name>
        <name evidence="6" type="ORF">BROFUL_01592</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the drug/metabolite transporter (DMT) superfamily. Small multidrug resistance (SMR) (TC 2.A.7.1) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19660">
        <property type="protein sequence ID" value="KKO19660"/>
        <property type="gene ID" value="BROFUL_01592"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1971"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000390">
        <property type="entry name" value="Small_drug/metabolite_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045324">
        <property type="entry name" value="Small_multidrug_res"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30561">
        <property type="entry name" value="PTHR30561"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00893">
        <property type="entry name" value="Multi_Drug_Res"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="29"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="57"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="84"/>
            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="107" mass="11656" checksum="B365539F671C9BA7" modified="2015-11-11" version="1">MSWLYMVLAILLEVSGTMCLKLSQGFTKIVPSVLLFIFYGFSFTALSLALRKVDVSVAYAVWSGLGTILIATVGIVWFREPLNALKIISIVLIVLGMIGLRLSGGMQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVW5</accession>
    <name>A0A0M2UVW5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Carbamate kinase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_02188</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the carbamate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000216">
        <property type="protein sequence ID" value="KKO19106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19106">
        <property type="protein sequence ID" value="KKO19106"/>
        <property type="gene ID" value="BROFUL_02188"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2728"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008804">
        <property type="term" value="F:carbamate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006525">
        <property type="term" value="P:arginine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04235">
        <property type="entry name" value="AAK_CK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036393">
        <property type="entry name" value="AceGlu_kinase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001048">
        <property type="entry name" value="Asp/Glu/Uridylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003964">
        <property type="entry name" value="Carb_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023000">
        <property type="entry name" value="Shikimate_kinase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30409">
        <property type="entry name" value="PTHR30409"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00696">
        <property type="entry name" value="AA_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000723">
        <property type="entry name" value="Carbamate_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53633">
        <property type="entry name" value="SSF53633"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00746">
        <property type="entry name" value="arcC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01128">
        <property type="entry name" value="SHIKIMATE_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6 8" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="AA_kinase" evidence="7">
        <location>
            <begin position="5"/>
            <end position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011066"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR000723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00696"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="315" mass="34343" checksum="357BA3E8918F676A" modified="2015-11-11" version="1">MKRRVIVIALGGNALIGEGQRGTIAEQFENIRKSLDGIIYCLKAGFEVVITHGNGPQVGNLLLMVEACRSQVPELSLGVCVADTEGAIGYMIQQSLTNRLRKEGIDRCVVTVLTQVVVDKDDQAFSNPTKPIGPFLSREEAERFRREKGWHIAEDSHRGYRRVVASPNPLKIVEERAVKTLLKTGDIVIAAGGGGIPVITNESGYLEGVDVVIDKDLASAVLARDIHAQCLMMLTGVEHVFLNFKQPNEQALSRFTVKDARKYLQEGHFPPGSMGPKVQAAINFLEWGGERAIVTSIDKVKEALNGQAGSIICKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW28</accession>
    <name>A0A0M2UW28_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GTP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02154</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19171.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19171">
        <property type="protein sequence ID" value="KKO19171"/>
        <property type="gene ID" value="BROFUL_02154"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2688"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01878">
        <property type="entry name" value="HflX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030394">
        <property type="entry name" value="G_HFLX_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016496">
        <property type="entry name" value="GTPase_HflX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10229">
        <property type="entry name" value="PTHR10229"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00326">
        <property type="entry name" value="GTP1OBG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03156">
        <property type="entry name" value="GTP_HflX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51705">
        <property type="entry name" value="G_HFLX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hflx-type G" evidence="1">
        <location>
            <begin position="19"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19171.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="249" mass="27867" checksum="A63D98E43A7058AF" modified="2015-11-11" version="1">MYEIEKRQERLVASRKEFFTVSLVGYTNAGKSTLMNALTEIDTFVEDKLFATLDTKTSVCRLENGKKVLVSDTVGFIQKLPHHLVSSFKATLEEARHADLLLHVADISSPLVHKQVEAVNAVLKELGCGNTPTIMVFNKIDALKDASIVPLLQSNFRDSIMLSAKTQEGIGGLKRKIREILEERFIDVELTCSPGSGKLIAYLHEHARILSSRFEEQRAIFRLLMDGKLIQKLRTLDDTVQIKDAVGTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW34</accession>
    <name>A0A0M2UW34_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Cobalt ABC transporter permease component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_02117</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000212">
        <property type="protein sequence ID" value="KKO19176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19176">
        <property type="protein sequence ID" value="KKO19176"/>
        <property type="gene ID" value="BROFUL_02117"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003339">
        <property type="entry name" value="ABC/ECF_trnsptr_transmembrane"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02361">
        <property type="entry name" value="CbiQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="29"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="52"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="118"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="203"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="239" mass="26703" checksum="3A0D4338E2F4161E" modified="2015-11-11" version="1">MNLSSPATRLGTVLIVSILVGLGLFNRPVCLVVFLLIISLFALIVVRRTFVTAWRCKGVLIFFLVTGATLLWTKEGRSLAPVLLTKMLTMWLWVVIWINWVGFERILLTFEKLRTPPVFIHIVAFTARFLPILTERLKMMLAAQASRGAKRGVHPLHLHNLAGGIGCLLVSSFEQAENVERAMQSRGFSGRYPLLVENDDAGALPYGSMIVLFLFTSMIWYGVLCNVLCCPCPEDILPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW49</accession>
    <name>A0A0M2UW49_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Hydrazine synthase subunit A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">hzsA</name>
        <name evidence="3" type="ORF">BROFUL_01207</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000129">
        <property type="protein sequence ID" value="KKO20072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20072">
        <property type="protein sequence ID" value="KKO20072"/>
        <property type="gene ID" value="BROFUL_01207"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040698">
        <property type="entry name" value="HZS_alpha_mid"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18582">
        <property type="entry name" value="HZS_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644221" evidence="1">
        <location>
            <begin position="27"/>
            <end position="768"/>
        </location>
    </feature>
    <feature type="domain" description="HZS_alpha" evidence="2">
        <location>
            <begin position="485"/>
            <end position="589"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="768"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="768" mass="85120" checksum="477B7677D1D65E86" modified="2015-11-11" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW94</accession>
    <name>A0A0M2UW94_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00932</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000113">
        <property type="protein sequence ID" value="KKO20343.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20343">
        <property type="protein sequence ID" value="KKO20343"/>
        <property type="gene ID" value="BROFUL_00932"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003346">
        <property type="entry name" value="Transposase_20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002525">
        <property type="entry name" value="Transposase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01548">
        <property type="entry name" value="DEDD_Tnp_IS110"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02371">
        <property type="entry name" value="Transposase_20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DEDD_Tnp_IS110" evidence="1">
        <location>
            <begin position="5"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01548"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20343.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="336" mass="38778" checksum="DC4E822216CCAC9F" modified="2015-11-11" version="1">MIKYIGLDAHSSTCTFNVTDERGREVDNTTIESNGRLLVKYVRGVEGVKKLTFEECELSNWLYEILRPEVDELIVCNPVANGDYKKKKTDKMDARKLSNLLRGGFLVPVYHDGSKRERLRSLMSGYQDFIEEGVRLKNRYKSLFRKSGKKIKGEALYNDESFLEGLERRDFQFIGTQIYQLLEKMEEGRQEYVKEIVRCSKGFKEIKYLKSIPGIGSIQAAKIVSQVIDPERFSSKYKYYSYCGLVRHKRISDGRGYGSEKIWGNRILKCVYKMAGHSVLKGKSGLRNYYDTLRLKGIGHDNAYNAVCRKIAAISLSVWRKSEKYNDRLITGNLIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWE2</accession>
    <name>A0A0M2UWE2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CRISPR-associated protein (Cas Csd1)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02000</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000202">
        <property type="protein sequence ID" value="KKO19286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19286">
        <property type="protein sequence ID" value="KKO19286"/>
        <property type="gene ID" value="BROFUL_02000"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010144">
        <property type="entry name" value="CRISPR-assoc_prot_Csd1-typ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09709">
        <property type="entry name" value="Cas_Csd1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="598"/>
            <end position="618"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="618" mass="70587" checksum="19CB7AC73C69097A" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWE4</accession>
    <name>A0A0M2UWE4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Nitrogen regulatory protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01375</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000142">
        <property type="protein sequence ID" value="KKO19900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19900">
        <property type="protein sequence ID" value="KKO19900"/>
        <property type="gene ID" value="BROFUL_01375"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030234">
        <property type="term" value="F:enzyme regulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006808">
        <property type="term" value="P:regulation of nitrogen utilization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002187">
        <property type="entry name" value="N-reg_PII"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011322">
        <property type="entry name" value="N-reg_PII-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015867">
        <property type="entry name" value="N-reg_PII/ATP_PRibTrfase_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00543">
        <property type="entry name" value="P-II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54913">
        <property type="entry name" value="SSF54913"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="98" mass="10966" checksum="3783D8C7EB5D36D7" modified="2015-11-11" version="1">MKSVSKVEIIIDSLEVKHVVKFLDEIGVSGYSIFNDVIGKGHRGIRSGFELTDLFKNSYIMVVCDEKEMHKIVEAIRPIIKKSGGICIVSDVVTRIDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWF3</accession>
    <name>A0A0M2UWF3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Rubrerythrin domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00869</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000106">
        <property type="protein sequence ID" value="KKO20398.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20398">
        <property type="protein sequence ID" value="KKO20398"/>
        <property type="gene ID" value="BROFUL_00869"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012347">
        <property type="entry name" value="Ferritin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003251">
        <property type="entry name" value="Rubrerythrin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02915">
        <property type="entry name" value="Rubrerythrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rubrerythrin" evidence="1">
        <location>
            <begin position="10"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20398.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="166" mass="18929" checksum="C0ADF983C61C4BE1" modified="2015-11-11" version="1">MKYENFNDAEALKIAMTIEEEGLEFYSILMKSTKDDKAKDIFSELALAEKKHLALFQKAYSEIPAPVNPVQGCEDYTVNLYLKDLVDTGIFTKKGEARRLATEIKSDIDALKIGIQAEKDSILYYNEAAKNTRHEGGKKAFEQLTNEEKKHLQRLTELLKVLKKIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWF8</accession>
    <name>A0A0M2UWF8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Flavoredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00874</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000106">
        <property type="protein sequence ID" value="KKO20403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20403">
        <property type="protein sequence ID" value="KKO20403"/>
        <property type="gene ID" value="BROFUL_00874"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016646">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002563">
        <property type="entry name" value="Flavin_Rdtase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01613">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00903">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavin_Reduct" evidence="1">
        <location>
            <begin position="9"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="191" mass="20735" checksum="0393CAAE6934B639" modified="2015-11-11" version="1">MKKSLGQKTIVYPTPVLIVGTYDKAGKPNAMNVAWGGLCCSSPPSIAISIRKATYTYGNLVERKAFTVNIPSESYAKEADYFGIASGGKEDKFSATGLTPERSSLVDAPYIKEFPLVLECKLTYTIEIGLHTQFIGEIMDVKVEESALGESGIIDMEKLHPILYAPEIRAYYGVGKPLGKAFSIGKQVKVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWI8</accession>
    <name>A0A0M2UWI8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01337</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000139">
        <property type="protein sequence ID" value="KKO19945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19945">
        <property type="protein sequence ID" value="KKO19945"/>
        <property type="gene ID" value="BROFUL_01337"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="142" mass="16284" checksum="0EE4267CBF6ABBBB" modified="2015-11-11" version="1">MPGYEIVEYRYVKPYKEDGVEPNEIKIGILDFLREIRNCPDGISPRSSFFIVGVEEALYMTASQERQSLAREIHRILQSSASLFVRKLIQVQIVCKGRIIRGDSLWVEYRGENLPIELIFGSTTAYNVRGITIYKTGYNLSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWL1</accession>
    <name>A0A0M2UWL1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 8">UDP-glucose 4-epimerase</fullName>
            <ecNumber evidence="5 8">5.1.3.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">galE</name>
        <name evidence="10" type="ORF">BROFUL_01928</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>UDP-alpha-D-glucose = UDP-alpha-D-galactose</text>
            <dbReference type="Rhea" id="RHEA:22168"/>
            <dbReference type="ChEBI" id="CHEBI:58885"/>
            <dbReference type="ChEBI" id="CHEBI:66914"/>
            <dbReference type="EC" id="5.1.3.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 8">
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 8">Carbohydrate metabolism; galactose metabolism.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 8">Belongs to the NAD(P)-dependent epimerase/dehydratase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.1.3.2" evidence="5 8"/>
    <dbReference type="EMBL" id="LAQJ01000197">
        <property type="protein sequence ID" value="KKO19356.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19356">
        <property type="protein sequence ID" value="KKO19356"/>
        <property type="gene ID" value="BROFUL_01928"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2398"/>
    <dbReference type="UniPathway" id="UPA00214"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003978">
        <property type="term" value="F:UDP-glucose 4-epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006012">
        <property type="term" value="P:galactose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd05247">
        <property type="entry name" value="UDP_G4E_1_SDR_e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016040">
        <property type="entry name" value="NAD(P)-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005886">
        <property type="entry name" value="UDP_G4E"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16363">
        <property type="entry name" value="GDP_Man_Dehyd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01179">
        <property type="entry name" value="galE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7 8" id="KW-0520">NAD</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD(P)-bd_dom" evidence="9">
        <location>
            <begin position="8"/>
            <end position="333"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000083"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001911"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007637"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00018569"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU366046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF16363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19356.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="349" mass="39044" checksum="4FE113C646FC122C" modified="2015-11-11" version="1">MNNSDTVIVTGGAGYIGSHTIIELLEQTDYRVISLDNYSNSTEDTYRRIREITGKGDRLSWFKVDLCNKAELIHTLKPTDSIKGIIHFAAFKSVPESVADPLLYYHNNMESLVNILYLCREKKIRDFIFSSSCSVYGNIKTLPVTEEVELPEAESPYAHTKQMGEEMVKSFTKYTPEFKSVLLRYFNPAGAHPSAKIGELPLGPPTSLVPVITRTAAGLIPKMYVHGGDYETRDGSCIRDYIHVSDIADAHIKALDFVLKGKNREACSLFNLGTGNGITVFEAIKSFEKVSGKKLNYEVGPRRSGDVVAIYANNDLARKELGWQPKYGLDDMMLSAWKWQQHISTITAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWQ1</accession>
    <name>A0A0M2UWQ1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01007</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the OprB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000119">
        <property type="protein sequence ID" value="KKO20262.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20262">
        <property type="protein sequence ID" value="KKO20262"/>
        <property type="gene ID" value="BROFUL_01007"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015288">
        <property type="term" value="F:porin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008643">
        <property type="term" value="P:carbohydrate transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007049">
        <property type="entry name" value="Carb-sel_porin_OprB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038673">
        <property type="entry name" value="OprB_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04966">
        <property type="entry name" value="OprB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU363072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20262.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="529" mass="58311" checksum="7C7F51241BD964AB" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWV1</accession>
    <name>A0A0M2UWV1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02273</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO18979.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18979">
        <property type="protein sequence ID" value="KKO18979"/>
        <property type="gene ID" value="BROFUL_02273"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="81"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18979.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="233" mass="24859" checksum="F1E0B5EEEA951B66" modified="2015-11-11" version="1" fragment="single">PAVPEVPEVPEVPEVPEVPEVPEVPEVPEAPAVPELPEAPEAPSMPEVPAVPEVPKAPVIPEVAPAPGAPQAAVPEIPAAKPQDEKVEALPEGKKESMAEAPHKCATCNKEVGEGHICGLTTYCQHCKEEVGSGHICDLTFFCKDCKKEVGDGHVCGVTTFCSTCEEEVGPGHICDVTYFCYDCEKEVGDDHICGITSFCPTCKAESGTGHECGKTYFCFDCEKEVPKDHQHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWV4</accession>
    <name>A0A0M2UWV4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01830</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000190">
        <property type="protein sequence ID" value="KKO19451.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19451">
        <property type="protein sequence ID" value="KKO19451"/>
        <property type="gene ID" value="BROFUL_01830"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013105">
        <property type="entry name" value="TPR_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07719">
        <property type="entry name" value="TPR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644134" evidence="3">
        <location>
            <begin position="24"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="155"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="196"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="92"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19451.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="302" mass="34227" checksum="9374D2E7BA62323B" modified="2015-11-11" version="1">MKLRFCVLFLVLIPFLNCGIPNAQGEFVQSEIRNPKSKISRDDAVKLFTDANEKYLQAMKLVASNNIPKANQMLQETAELYETALAGGFRNGQIYYNLGNTYYRRGELGKAIANYRRAERLMPGNADLNANLRLVKGATADKELSAEIPVVVRWVFFWLFFLNLNELSFVAISLYVVVMAVLFFSSIRKYACMKKVFIGFASALFVVLVSLGMKIYHEQGVSQGVIIVAKCEVRYGPGEEYEPKFEIHNGAECVIEDEKNDWYRVYVKVGVRQGTGTDTSVGEKTGKDVRRGWLQKKYVDMI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX00</accession>
    <name>A0A0M2UX00_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF58 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00712</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20593.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20593">
        <property type="protein sequence ID" value="KKO20593"/>
        <property type="gene ID" value="BROFUL_00712"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002881">
        <property type="entry name" value="DUF58"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01882">
        <property type="entry name" value="DUF58"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF58" evidence="1">
        <location>
            <begin position="42"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="301" mass="34807" checksum="6710B6DF7DABD829" modified="2015-11-11" version="1">MAENPFDPVTLSKIANMELRARLIVDGVLSGIHKSPYTGSSIEFLEHKEYSPGNEIKHVDWKVLAKTDKYYVKQFEEETNLRCYLFLDASGSMGYQSKGISKFEYAATLAASLSYLFLKQSDLVGLICFSDRVLHYVPPRSRVTHLHTLLNVLTELKTAGKSNISAVLNPFIEKISHRSLIIVLSDFFDHTEKILHQLQHFRFKRNEVILFHILDPYELTFPFETVTFFESMEDERHILADPKSIKEHYLSGMNYFLGQFKQSCLENQIDYWLIDSSTPLDQALIKFLARRESSLRPARKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX55</accession>
    <name>A0A0M2UX55_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01727</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000180">
        <property type="protein sequence ID" value="KKO19556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19556">
        <property type="protein sequence ID" value="KKO19556"/>
        <property type="gene ID" value="BROFUL_01727"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="81"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="117" mass="13360" checksum="69DCDEF3FCF89331" modified="2015-11-11" version="1">MKQKIYPDLHGIDAWDQNNYGRVVVHSMNSAQFFEITGIQPPPSPIDAKTYTKHGLPWFDLYDETKGTVAPSDLLSKVKTITERDKERGGHAEGNQSIDVSEKHIKKIRPDNERKKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX73</accession>
    <name>A0A0M2UX73_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01109</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20150">
        <property type="protein sequence ID" value="KKO20150"/>
        <property type="gene ID" value="BROFUL_01109"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032568">
        <property type="entry name" value="DUF4926"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16277">
        <property type="entry name" value="DUF4926"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="78" mass="8746" checksum="6E176F8B7F29F4DB" modified="2015-11-11" version="1">MIRELDTVVLRHDIDEYGLKQGDIGAVVHCYSDGNAFEVEFVTAEGRTIAVLTLTSKDIRLMSKKEILHVREIVGQTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXA1</accession>
    <name>A0A0M2UXA1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Heat shock protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00570</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the small heat shock protein (HSP20) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000079">
        <property type="protein sequence ID" value="KKO20703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20703">
        <property type="protein sequence ID" value="KKO20703"/>
        <property type="gene ID" value="BROFUL_00570"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.715"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002068">
        <property type="entry name" value="A-crystallin/Hsp20_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007052">
        <property type="entry name" value="CS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008978">
        <property type="entry name" value="HSP20-like_chaperone"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00011">
        <property type="entry name" value="HSP20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49764">
        <property type="entry name" value="SSF49764"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51203">
        <property type="entry name" value="CS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01031">
        <property type="entry name" value="SHSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="SHSP" evidence="3">
        <location>
            <begin position="38"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="domain" description="CS" evidence="4">
        <location>
            <begin position="42"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003616"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS01031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="150" mass="17031" checksum="5B9C451939262C94" modified="2015-11-11" version="1">MAKDLMKWTQLPTISSIQEEMNRMFDRVFRGGDLSDFGITGTWAPPLDLSETADKVTVKAEIPGMDPKEIDISIQGDTLIIKGEKKEEKEEKGKNYYRMERRYGNFTRSVDLPASVDTNKVTAECKNGVLEITMQKREEVKPKQITVKVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXA5</accession>
    <name>A0A0M2UXA5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">DNA repair protein RadC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_01043</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="6">Belongs to the UPF0758 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20195">
        <property type="protein sequence ID" value="KKO20195"/>
        <property type="gene ID" value="BROFUL_01043"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1305"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd08071">
        <property type="entry name" value="MPN_DUF2466"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037518">
        <property type="entry name" value="MPN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025657">
        <property type="entry name" value="RadC_JAB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010994">
        <property type="entry name" value="RuvA_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001405">
        <property type="entry name" value="UPF0758"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020891">
        <property type="entry name" value="UPF0758_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30471">
        <property type="entry name" value="PTHR30471"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04002">
        <property type="entry name" value="RadC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47781">
        <property type="entry name" value="SSF47781"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00608">
        <property type="entry name" value="radc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50249">
        <property type="entry name" value="MPN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01302">
        <property type="entry name" value="UPF0758"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="MPN" evidence="7">
        <location>
            <begin position="109"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003797"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20195.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="239" mass="26745" checksum="E49B092BF53B67C7" modified="2015-11-11" version="1">MRQISTVMKEDKKRPTIKQLPTHERPRERLIQSGDEHLTDAELLGIIIRDGTTNYSAVDLAQKLLSEYGDFRRLSMASVGELCKIKGIGPARAAQIKASLAIAKRFSTISVKPLQQFKCSNDIFDHFHERLRGKKQEVFLVVLLDNKNRVIKEMQISAGSLTSSIVHPREVFNPAIKESAAAVVFVHNHPSGDPEPSKEDLQITNRLLEAGNIVGIKVLDHIIIGNERFVSFKDKGIMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXB0</accession>
    <name>A0A0M2UXB0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02195</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000218">
        <property type="protein sequence ID" value="KKO19099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19099">
        <property type="protein sequence ID" value="KKO19099"/>
        <property type="gene ID" value="BROFUL_02195"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="48" mass="5500" checksum="8F59C7AA4EBBC845" modified="2015-11-11" version="1">MNYSFHPEAEIEFIEAGEYYEEKGSGLGYDFAVEVYSAIERTITFPKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXF2</accession>
    <name>A0A0M2UXF2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00728</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000090">
        <property type="protein sequence ID" value="KKO20552.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20552">
        <property type="protein sequence ID" value="KKO20552"/>
        <property type="gene ID" value="BROFUL_00728"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="5"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644066" evidence="2">
        <location>
            <begin position="22"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="59"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="127"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="161"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="195"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="229"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20552.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="404" mass="46450" checksum="7103C7A802416E6E" modified="2015-11-11" version="1">MKLYKYALFLLSLALFCSPFACEKGKNHSEIADGLVRENKLDEALAEYTKAIEANVKLAEAYYGRGVVYFRQDKLEEAATDFRKAIDIKSNYLDAHKKLAETFVKIGAPDDEFQKRYKAIDRDPENPLSYVDLGVFLHKLEKDIDAIAQYKKALELDPGNPYIIFNLGVGYLDMGLYEDAETMFKKAAEINPSYDNAHYNLAVALHKQGKVDDARKELNKTLEVNPKYSNAYVVFGLISLTEKKFDEAIAHYNKAMEINPDNLDARYQRAIVFALQQRYDDALADNLAVLEKNPKYVNAAYNVGVIYHRTDRLDKAMEWYDKITKKIEPLYEDAYYNRAQIYSMKGDHSKAYSDYLSYAYITKWRTGKDPAVVYKQDEIKEMFLSSVPALKGQIKDQELELKSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXQ1</accession>
    <name>A0A0M2UXQ1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01542</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000160">
        <property type="protein sequence ID" value="KKO19741.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19741">
        <property type="protein sequence ID" value="KKO19741"/>
        <property type="gene ID" value="BROFUL_01542"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="250"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="63"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="125"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="179"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19741.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="277" mass="31743" checksum="9379D630DFFF31D2" modified="2015-11-11" version="1">MGSIFFRQNMFDDAVKEFTKVTRIKPEYVEAYQRLWLAYKKLGMNDKAEEELQKYKKLIEERMQSMVGGSPQVVKPVTPPKREEPEEKPEPEESEPPEAEEETAQPAETRPQEATGPGARVPESRVQEEPAEQDRPVPEKPEASVPGEPPPLSSGKPSVLETRRTDVLETTKHLGQRYTEPPKPPDEMKREPSEESGYQSPYIKVDKKNPAFKHLFKPFKKVGVTFFKNPLKKITEKWRGTYAGKLVKGILYYVVTIQIWLCIVAILGIYFVKRKGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXZ6</accession>
    <name>A0A0M2UXZ6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Na+/H+ antiporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01443</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000147">
        <property type="protein sequence ID" value="KKO19841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19841">
        <property type="protein sequence ID" value="KKO19841"/>
        <property type="gene ID" value="BROFUL_01443"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1780"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005451">
        <property type="term" value="F:monovalent cation:proton antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006813">
        <property type="term" value="P:potassium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006153">
        <property type="entry name" value="Cation/H_exchanger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038770">
        <property type="entry name" value="Na+/solute_symporter_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030151">
        <property type="entry name" value="NhaP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006037">
        <property type="entry name" value="RCK_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036721">
        <property type="entry name" value="RCK_C_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32507:SF7">
        <property type="entry name" value="PTHR32507:SF7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00999">
        <property type="entry name" value="Na_H_Exchanger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02080">
        <property type="entry name" value="TrkA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF116726">
        <property type="entry name" value="SSF116726"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51202">
        <property type="entry name" value="RCK_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="31"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="57"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="87"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="189"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="224"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="272"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="302"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="334"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="362"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="domain" description="RCK C-terminal" evidence="5">
        <location>
            <begin position="402"/>
            <end position="483"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="488" mass="53323" checksum="C18E2E4D41EE0C08" modified="2015-11-11" version="1">MPIENILLWVAILIFVSVVSSKLSDKFGIPILLLFLTIGMLAGSEGIGGIYFDNAKLAKSIGVVALIFIIFSGGLDTNWNDTRSVILPGAVLSTVGVLMTAIFTGFFAVYILKFSLLEGMLLGSIVSSTDAPAVFSVLRSKRISLKQPLKPLLEFESGSNDPMAIFLTAGFISILSAENMKITALIPRFMLDMSVGALIGYLMARFIVFFINRLKLGYEGLYPVIMISFVLLTYVIAVFLKGNGILAVYIAGLMLGKAKFPNKKIIVKFHDGLAWLAQIVMFIILGLLVFPSHITPLIETGFLLTFLLMVVARPVSVLLCLLPFNIDMRKKLMVAWVGLRGSVPIILATFPFMAGIPQADTIFNIVFLIVIASVFIQGTSIPALSKILKQDVPLANKMNYPIEFEKTAAFDAEMIDVIVPFDSEVVGKRISDLDIPEKCLIMLISRAGKFVIPSGDMVIESSDVLLVLANTADFLVFQQMLARLKKDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY22</accession>
    <name>A0A0M2UY22_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">30S ribosomal protein S4</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rpsD</name>
        <name evidence="9" type="ORF">BROFUL_01896</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.</text>
    </comment>
    <comment type="function">
        <text evidence="6">With S5 and S12 plays an important role in translational accuracy.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Part of the 30S ribosomal subunit. Contacts protein S5. The interaction surface between S4 and S5 is involved in control of translational fidelity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the universal ribosomal protein uS4 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19369">
        <property type="protein sequence ID" value="KKO19369"/>
        <property type="gene ID" value="BROFUL_01896"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2365"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01306_B">
        <property type="entry name" value="Ribosomal_S4_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022801">
        <property type="entry name" value="Ribosomal_S4/S9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001912">
        <property type="entry name" value="Ribosomal_S4/S9_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005709">
        <property type="entry name" value="Ribosomal_S4_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11831">
        <property type="entry name" value="PTHR11831"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11831:SF4">
        <property type="entry name" value="PTHR11831:SF4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00163">
        <property type="entry name" value="Ribosomal_S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01479">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01390">
        <property type="entry name" value="Ribosomal_S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00363">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01017">
        <property type="entry name" value="rpsD_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6 9" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 6" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_S4" evidence="8">
        <location>
            <begin position="3"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="domain" description="S4" evidence="7">
        <location>
            <begin position="98"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM01390"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="208" mass="23961" checksum="0DDB18C73A4ACA48" modified="2015-11-11" version="1">MARYVGPQCRLCRREGEKLFLKGIRCDTVKCAITKRKYPPGQFTWGRGKLSKYGIQFREKQKVKRYYGILERQFKNYFKKAERQKGNTGENLLMMLERRLDNVVCLLSFASSRKSARQLVLHGHITVNNKKVDIASYLVKSGDIIKPKDDEATQNIVKANLELMKGRNVPAWMQLRVDTLEGQVIQLPAREDISAPAQEQLIVELCSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY59</accession>
    <name>A0A0M2UY59_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">RNA polymerase sigma factor RpoD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_00267</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000031">
        <property type="protein sequence ID" value="KKO21018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21018">
        <property type="protein sequence ID" value="KKO21018"/>
        <property type="gene ID" value="BROFUL_00267"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000943">
        <property type="entry name" value="RNA_pol_sigma70"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007630">
        <property type="entry name" value="RNA_pol_sigma70_r4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04545">
        <property type="entry name" value="Sigma70_r4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000770">
        <property type="entry name" value="RNA_pol_sigma-SigE/K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00046">
        <property type="entry name" value="SIGMA70FCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0731">Sigma factor</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="5">
        <location>
            <begin position="42"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4" evidence="6">
        <location>
            <begin position="211"/>
            <end position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO21018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="282" mass="33034" checksum="63AA69AB3CE702A3" modified="2015-11-11" version="1">MEFALRVYLKDLKKISPLTMEEERMLFEKINGGDLQARESIVTAYLPLVIKIASRFVYYGTSLLDLIGEGNIGLIRAMERFDYTLGQRFGTYASWWIKWTIQRALINNSKTVHIPIYMADRVSKWKKTSSRLTNTLRRLPDRNEIAQALNLNEKQAQWVERAVMHTYTLAETSLKPDDSSELSEQFFDKNTKMPDEELIETHDRKKLIRLLETIDCQEAKVLKMRYGFDNAEPMTLREISKKLNISREWVRKIEKKALSRLGQLMNCREQSINKKSMLKNAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY71</accession>
    <name>A0A0M2UY71_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter ATP-binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01366</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000141">
        <property type="protein sequence ID" value="KKO19916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19916">
        <property type="protein sequence ID" value="KKO19916"/>
        <property type="gene ID" value="BROFUL_01366"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="1">
        <location>
            <begin position="6"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="215" mass="24147" checksum="3BBF55BB27EB2E77" modified="2015-11-11" version="1">MLQYAREYPGKLSGGQQQSIAIARAIVTEPKLLLMDEPLSNIDRKLRGNIRQEIRRIQQETRIATVYITHDQEDAFLLANNVAVMNAGALEQTGSPEEIYSAPASLFVAGFVGESNIIRIHILGKDRISTPWGEIACSTKNHERGNASLFFRPQHIKIDKSGPYYGVIKNRYFAGEGYKYTLSTSGENITLQDQGIYETGQPIRFSITKMTLLFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY78</accession>
    <name>A0A0M2UY78_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative proetein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00228</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000028">
        <property type="protein sequence ID" value="KKO21043.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21043">
        <property type="protein sequence ID" value="KKO21043"/>
        <property type="gene ID" value="BROFUL_00228"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="26"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21043.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="301" mass="34647" checksum="6DB7AD14AD1E8524" modified="2015-11-11" version="1">MKSVRNINFQYIRKICQSIFVRMRNFWWITGIVFFTLLVLLFAFVFPLSKQYARTYKNVEDLSAALERYTAKKMLYNESWITSKRQEAELYHKEIEKCKSFLVGMDDHLESVFMIQDAEKGLVKVEDEALWKTEYGKRISALLAKLEANHVALDDDALPFQDWGTGIPAWDSILSAQKRFWIIEAIVNVVLNNSGITKLGQITFQESCRSGNASFSRLYTAIPITLKVELQADYIQFLLHDILKSPVPFVIEGVNISSTDKILSHTFPKENEDTVSRDTNNNVSQVITDVIIDAYVIDYKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY96</accession>
    <name>A0A0M2UY96_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NACHT domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00734</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000092">
        <property type="protein sequence ID" value="KKO20540.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20540">
        <property type="protein sequence ID" value="KKO20540"/>
        <property type="gene ID" value="BROFUL_00734"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007111">
        <property type="entry name" value="NACHT_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05729">
        <property type="entry name" value="NACHT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NACHT" evidence="1">
        <location>
            <begin position="36"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20540.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="150" mass="17317" checksum="D2F3439E4AC36787" modified="2015-11-11" version="1">MPLYLSDWQRVATGSDVEPLGIEDLFIDGFKEPRFLVRGLPGGGKTTLMRYLVHRFATLGAEGKKELIPVYLRLRDFCCAKNTLDEFVKQQINEDSDSPEMLDVLCDKRRFLEQPMALFLDGLMKLKTRRQIKKLPVSWMRLRRNILAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY97</accession>
    <name>A0A0M2UY97_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00445</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000058">
        <property type="protein sequence ID" value="KKO20832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20832">
        <property type="protein sequence ID" value="KKO20832"/>
        <property type="gene ID" value="BROFUL_00445"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="61"/>
            <end position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="80" mass="9124" checksum="05F87268385CF94C" modified="2015-11-11" version="1">MLQTTIKSLGFEATDFIDHTNNNESGKGGLRRGRSDEKRKILRWNTILRRAKAPLRPPNRQVSVMMSSRGSSLQLEPHVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYG9</accession>
    <name>A0A0M2UYG9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Chaperonin GroEL</fullName>
            <ecNumber evidence="6">5.6.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">60 kDa chaperonin</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Chaperonin-60</fullName>
            <shortName evidence="6">Cpn60</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">groEL</name>
        <name evidence="6" type="synonym">groL</name>
        <name evidence="10" type="ORF">BROFUL_00164</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 8">Together with its co-chaperonin GroES, plays an essential role in assisting protein folding. The GroEL-GroES system forms a nano-cage that allows encapsulation of the non-native substrate proteins and provides a physical environment optimized to promote and accelerate protein folding.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6 8">Forms a cylinder of 14 subunits composed of two heptameric rings stacked back-to-back. Interacts with the co-chaperonin GroES.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the chaperonin (HSP60) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.1.7" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000017">
        <property type="protein sequence ID" value="KKO21118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21118">
        <property type="protein sequence ID" value="KKO21118"/>
        <property type="gene ID" value="BROFUL_00164"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.202"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042026">
        <property type="term" value="P:protein refolding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03344">
        <property type="entry name" value="GroEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.7.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00600">
        <property type="entry name" value="CH60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018370">
        <property type="entry name" value="Chaperonin_Cpn60_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001844">
        <property type="entry name" value="Cpn60/GroEL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002423">
        <property type="entry name" value="Cpn60/GroEL/TCP-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027409">
        <property type="entry name" value="GroEL-like_apical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027413">
        <property type="entry name" value="GROEL-like_equatorial_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027410">
        <property type="entry name" value="TCP-1-like_intermed_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00118">
        <property type="entry name" value="Cpn60_TCP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00298">
        <property type="entry name" value="CHAPERONIN60"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48592">
        <property type="entry name" value="SSF48592"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52029">
        <property type="entry name" value="SSF52029"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54849">
        <property type="entry name" value="SSF54849"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02348">
        <property type="entry name" value="GroEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00296">
        <property type="entry name" value="CHAPERONINS_CPN60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6" id="KW-0143">Chaperone</keyword>
    <keyword evidence="9" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="9">
        <location>
            <begin position="116"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="29"/>
            <end position="32"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="50"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="86"/>
            <end position="90"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="414"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="494"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006607"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00600"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000419"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO21118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="559" mass="59171" checksum="60AF40EAD425F0A5" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYN8</accession>
    <name>A0A0M2UYN8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00339</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000042">
        <property type="protein sequence ID" value="KKO20937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20937">
        <property type="protein sequence ID" value="KKO20937"/>
        <property type="gene ID" value="BROFUL_00339"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="49" mass="4950" checksum="C63EE507EDC69B3C" modified="2015-11-11" version="1">MHCSEPDGRVAVATLPPCAGVAELGSLGGMVDINDLAQRISSVLNDAVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYQ4</accession>
    <name>A0A0M2UYQ4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01706</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000176">
        <property type="protein sequence ID" value="KKO19599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19599">
        <property type="protein sequence ID" value="KKO19599"/>
        <property type="gene ID" value="BROFUL_01706"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="5"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="139" mass="15860" checksum="10D7535188CED598" modified="2015-11-11" version="1">MPSARILIVEDERQTVDTLRDLFEQHGYETEVALSKQVALAILQERKMDLVLISTTVQEISGIEILYEMRRIIPNIPVIVMGNQKSKRIESSFLKAGTNIFVVKPLESAFILQTIENLLKARCAPMVTKKTRPYSKSRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYT1</accession>
    <name>A0A0M2UYT1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01191</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000126">
        <property type="protein sequence ID" value="KKO20116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20116">
        <property type="protein sequence ID" value="KKO20116"/>
        <property type="gene ID" value="BROFUL_01191"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="69"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="96" mass="10958" checksum="E7AA9ABC759725DF" modified="2015-11-11" version="1">MWGKLDRLEYFHRMLKKHIELVERRVIKGEQIPVEEKVHSLFEPHMEWLYKGKAKQAGGIGAYHSGGKRSMGFSRRASGCRETGGGVEQDISEAQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYT4</accession>
    <name>A0A0M2UYT4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01146</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000124">
        <property type="protein sequence ID" value="KKO20121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20121">
        <property type="protein sequence ID" value="KKO20121"/>
        <property type="gene ID" value="BROFUL_01146"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="30"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="55" mass="6659" checksum="EDC54DDF08ED1201" modified="2015-11-11" version="1">MKVLRYRCFFLEIFGSSIYIIKTTKEDLNLIFWVMGISFVFLMRQGKYTQDAHKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYT5</accession>
    <name>A0A0M2UYT5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00494</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000067">
        <property type="protein sequence ID" value="KKO20780.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20780">
        <property type="protein sequence ID" value="KKO20780"/>
        <property type="gene ID" value="BROFUL_00494"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd16325">
        <property type="entry name" value="LolA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029046">
        <property type="entry name" value="LolA/LolB/LppX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004564">
        <property type="entry name" value="OM_lipoprot_carrier_LolA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03548">
        <property type="entry name" value="LolA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89392">
        <property type="entry name" value="SSF89392"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20780.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="238" mass="27992" checksum="DC60ADABBF939904" modified="2015-11-11" version="1">MEESVYKNRFILLIVLISCVFFFQRSGLPKEVTPGKNLDEVLAEIEKANNAFKTLKADMTFTRTITLLESTEVFQGQMSYKKPKRLYLKFYPPRNEINVVDGKHVWVYHPAEKQVEKYDMDRDKQTSQGLSFFEFGYGESVHSVKKDYTITLFETMDEGKKRFYILDLLPKDKKSQYSDIRLWVEEGFWLPVRIELYESAGEVVNRIELKNIKLNKGMSDKLFIFEVPRGVEIIEPLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYV8</accession>
    <name>A0A0M2UYV8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glutamate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00011</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000003">
        <property type="protein sequence ID" value="KKO21258.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21258">
        <property type="protein sequence ID" value="KKO21258"/>
        <property type="gene ID" value="BROFUL_00011"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.19"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1060.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019480">
        <property type="entry name" value="Dihydroorotate_DH_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028261">
        <property type="entry name" value="DPD_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006004">
        <property type="entry name" value="Glut_synth_NADPH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009051">
        <property type="entry name" value="Helical_ferredxn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10418">
        <property type="entry name" value="DHODB_Fe-S_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14691">
        <property type="entry name" value="Fer4_20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52343">
        <property type="entry name" value="SSF52343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01316">
        <property type="entry name" value="gltA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding FR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="263"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO21258.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="792" mass="85271" checksum="9F593E6E103C74C7" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYW0</accession>
    <name>A0A0M2UYW0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_01115</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20156">
        <property type="protein sequence ID" value="KKO20156"/>
        <property type="gene ID" value="BROFUL_01115"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1383"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019829">
        <property type="term" value="F:ATPase-coupled cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00371">
        <property type="entry name" value="HMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023299">
        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018303">
        <property type="entry name" value="ATPase_P-typ_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008250">
        <property type="entry name" value="ATPase_P-typ_transduc_dom_A_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017969">
        <property type="entry name" value="Heavy-metal-associated_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006121">
        <property type="entry name" value="HMA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036163">
        <property type="entry name" value="HMA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027256">
        <property type="entry name" value="P-typ_ATPase_IB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001757">
        <property type="entry name" value="P_typ_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044492">
        <property type="entry name" value="P_typ_ATPase_HD_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00403">
        <property type="entry name" value="HMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00027">
        <property type="entry name" value="p-type_atpase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55008">
        <property type="entry name" value="SSF55008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81653">
        <property type="entry name" value="SSF81653"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="SSF81665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01525">
        <property type="entry name" value="ATPase-IB_hvy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01494">
        <property type="entry name" value="ATPase_P-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00154">
        <property type="entry name" value="ATPASE_E1_E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01047">
        <property type="entry name" value="HMA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50846">
        <property type="entry name" value="HMA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <keyword evidence="2 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="85"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="116"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="150"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="177"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="333"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="364"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="678"/>
            <end position="702"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="708"/>
            <end position="727"/>
        </location>
    </feature>
    <feature type="domain" description="HMA" evidence="8">
        <location>
            <begin position="5"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU362081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="732" mass="79105" checksum="0F05ACFC92CEFE5D" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYX4</accession>
    <name>A0A0M2UYX4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00271</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000031">
        <property type="protein sequence ID" value="KKO21022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21022">
        <property type="protein sequence ID" value="KKO21022"/>
        <property type="gene ID" value="BROFUL_00271"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="85" mass="10067" checksum="AB4A22905BBB1A5D" modified="2015-11-11" version="1">MKTKTIYEKEILKDIQDLPEPMQEKLAKIIRLLKKEFVLPELKKKSATEEFLSVCGTWEDDRSIEEQIKVIYSSRKSSTKMEKVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYY7</accession>
    <name>A0A0M2UYY7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00420</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000057">
        <property type="protein sequence ID" value="KKO20835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20835">
        <property type="protein sequence ID" value="KKO20835"/>
        <property type="gene ID" value="BROFUL_00420"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.525"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005624">
        <property type="entry name" value="PduO/GlcC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038084">
        <property type="entry name" value="PduO/GlcC-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03928">
        <property type="entry name" value="Haem_degrading"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143744">
        <property type="entry name" value="SSF143744"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="252" mass="26627" checksum="A629F13D5C8DC276" modified="2015-11-11" version="1">MKYFKGTIYGFPASLLLAAVLLPGVLANSLPSHTELREALKTVVKEENGGFGFQMWATVVDRDGAVKAVAFSGKDRGDQWPGSRVISAQKANTANAFSLPGFALSTANLFSAVQPGGSLFGLQESNPVSPEIAYQGPSEKIGTEKDPMVGHKIGGINVFGGGLALYNNEGRLLGALGVSGDSSCADHNIAWKIRHRLQLDYVPAGVSPTKDDNIVYDINAGVSASGWGHPQCSPEAARIAQELPKTHPVRKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ04</accession>
    <name>A0A0M2UZ04_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00227</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000028">
        <property type="protein sequence ID" value="KKO21042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21042">
        <property type="protein sequence ID" value="KKO21042"/>
        <property type="gene ID" value="BROFUL_00227"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005883">
        <property type="entry name" value="PilM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11104">
        <property type="entry name" value="PilM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="380"/>
            <end position="414"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="546" mass="61402" checksum="46D958B9E4BE7A5F" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ14</accession>
    <name>A0A0M2UZ14_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9 10">Multifunctional fusion protein</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="9">Protein translocase subunit SecD</fullName>
            </recommendedName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="10">Protein-export membrane protein SecF</fullName>
            </recommendedName>
        </domain>
    </protein>
    <gene>
        <name evidence="9" type="primary">secD</name>
        <name evidence="10" type="synonym">secF</name>
        <name evidence="11" type="ORF">BROFUL_01061</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Forms a complex with SecD. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF. Other proteins may also be involved.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Forms a complex with SecF. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF. Other proteins may also be involved.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the SecD/SecF family. SecD subfamily.</text>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the SecD/SecF family. SecF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20211.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20211">
        <property type="protein sequence ID" value="KKO20211"/>
        <property type="gene ID" value="BROFUL_01061"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1325"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015450">
        <property type="term" value="F:protein-transporting ATPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0065002">
        <property type="term" value="P:intracellular protein transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006605">
        <property type="term" value="P:protein targeting"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043952">
        <property type="term" value="P:protein transport by the Sec complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01463_B">
        <property type="entry name" value="SecD_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01464_B">
        <property type="entry name" value="SecF_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005791">
        <property type="entry name" value="SecD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022813">
        <property type="entry name" value="SecD/SecF_arch_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022645">
        <property type="entry name" value="SecD/SecF_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022646">
        <property type="entry name" value="SecD/SecF_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005665">
        <property type="entry name" value="SecF_bac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30081">
        <property type="entry name" value="PTHR30081"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07549">
        <property type="entry name" value="Sec_GG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02355">
        <property type="entry name" value="SecD_SecF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01755">
        <property type="entry name" value="SECFTRNLCASE"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00916">
        <property type="entry name" value="2A0604s01"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00966">
        <property type="entry name" value="3a0501s07"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01129">
        <property type="entry name" value="secD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 9" id="KW-0653">Protein transport</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9" id="KW-0811">Translocation</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 9" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="7"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="338"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="366"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="391"/>
            <end position="412"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="433"/>
            <end position="455"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="461"/>
            <end position="485"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="515"/>
            <end position="534"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="995"/>
            <end position="1012"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="1024"/>
            <end position="1046"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="1052"/>
            <end position="1073"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="1104"/>
            <end position="1122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="1128"/>
            <end position="1152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01463"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO20211.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1181" mass="129354" checksum="A77CB80B68A7E426" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ17</accession>
    <name>A0A0M2UZ17_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01066</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20216.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20216">
        <property type="protein sequence ID" value="KKO20216"/>
        <property type="gene ID" value="BROFUL_01066"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007367">
        <property type="entry name" value="DUF433"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04255">
        <property type="entry name" value="DUF433"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="104" mass="12432" checksum="6B268094E45AD3F7" modified="2015-11-11" version="1">MDPKISGGQPVIRDTRIKVLDIAIRYELMGMSADSIIDEYPHLRLEQVHDALSYYYGHKDMFDRKFREDQSLLKQLKKQYPSKLEVKLKEMDYVVWKEGRYYGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ55</accession>
    <name>A0A0M2UZ55_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01530</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000158">
        <property type="protein sequence ID" value="KKO19754.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19754">
        <property type="protein sequence ID" value="KKO19754"/>
        <property type="gene ID" value="BROFUL_01530"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19754.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="175" mass="19793" checksum="9448C38F795531C2" modified="2015-11-11" version="1">MAGITDDMIPVNATEENIVFLIRGELLQRYPNAIIYAQKAETQNGQRVKAPGLENQKYPIFKGTIKPDIYFLGFQLVPSQVRGVEDQGYFFVIEENPTGARFGLDAPDKKKEFDGWENLGWQDVFPDINDWNTVAPYIDLTQLEAKYSSTAAHFAHITFQPPFRALVHGSDMLPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ92</accession>
    <name>A0A0M2UZ92_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00995</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000118">
        <property type="protein sequence ID" value="KKO20286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20286">
        <property type="protein sequence ID" value="KKO20286"/>
        <property type="gene ID" value="BROFUL_00995"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="55" mass="6735" checksum="1EF1EE8977210982" modified="2015-11-11" version="1">MIFEVNYVTDNQRKKTERLAFIKERYKKLVLEPRREIEFEIEKALDDEDSDLDTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZD7</accession>
    <name>A0A0M2UZD7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01446</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000147">
        <property type="protein sequence ID" value="KKO19844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19844">
        <property type="protein sequence ID" value="KKO19844"/>
        <property type="gene ID" value="BROFUL_01446"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="151" mass="17555" checksum="83E28E5E3F25C8EA" modified="2015-11-11" version="1">MKEKRRPDRSDVEAVRDQILDFACAKHDFKLESEDFPFDGNWNGVFLVKFRDNPEVDRLYCEAPLGEHFIRFGLDLELDEQVWQQTHEDILREASGYDVAVYPSHAPEGGKRRCRLSLRAWVPNFGQRIFGLTLSNLIDCKKAILAMLARK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZG7</accession>
    <name>A0A0M2UZG7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00066</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000007">
        <property type="protein sequence ID" value="KKO21227.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21227">
        <property type="protein sequence ID" value="KKO21227"/>
        <property type="gene ID" value="BROFUL_00066"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21227.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="122" mass="13108" checksum="3B81AC75C6EB12FA" modified="2015-11-11" version="1">MGGGITLLLLYICLFGGASDRAYGMVLRLENAEMVNRSHVVVFGTVKGISSRKNDQEAVVSVECILKGDLSAKSEVRVVFSPGMAESPLFEVQERVLLFLVTTDTGLFQTVGGSQGKFSFGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZK6</accession>
    <name>A0A0M2UZK6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">DNA internalization-related competence protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_00225</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000028">
        <property type="protein sequence ID" value="KKO21040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21040">
        <property type="protein sequence ID" value="KKO21040"/>
        <property type="gene ID" value="BROFUL_00225"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030420">
        <property type="term" value="P:establishment of competence for transformation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07731">
        <property type="entry name" value="ComA-like_MBL-fold"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035681">
        <property type="entry name" value="ComA-like_MBL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004477">
        <property type="entry name" value="ComEC_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004797">
        <property type="entry name" value="Competence_ComEC/Rec2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025405">
        <property type="entry name" value="DUF4131"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03772">
        <property type="entry name" value="Competence"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13567">
        <property type="entry name" value="DUF4131"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00360">
        <property type="entry name" value="ComEC_N-term"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00361">
        <property type="entry name" value="ComEC_Rec2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="60"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="295"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="322"/>
            <end position="341"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="370"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="392"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="445"/>
            <end position="463"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="469"/>
            <end position="502"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="553"/>
            <end position="577"/>
        </location>
    </feature>
    <feature type="domain" description="Lactamase_B" evidence="7">
        <location>
            <begin position="598"/>
            <end position="798"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO21040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="845" mass="94548" checksum="EF54CE5EEB605174" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZS2</accession>
    <name>A0A0M2UZS2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NTP_transf_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00172</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000018">
        <property type="protein sequence ID" value="KKO21090.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21090">
        <property type="protein sequence ID" value="KKO21090"/>
        <property type="gene ID" value="BROFUL_00172"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.212"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002934">
        <property type="entry name" value="Polymerase_NTP_transf_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01909">
        <property type="entry name" value="NTP_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NTP_transf_2" evidence="1">
        <location>
            <begin position="11"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21090.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="97" mass="11223" checksum="33CACEAB2C540D0D" modified="2015-11-11" version="1">MKNLEKIKEIIAKHKNKLHDKYSVIEIGIFGSYVREEQKETSDVDILVEFEKPVSLLQIVSLENYLSDILGVKVDVVPKKNIRKELKDYILKEAVPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZT7</accession>
    <name>A0A0M2UZT7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">von Willebrand factor type A domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01280</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20009">
        <property type="protein sequence ID" value="KKO20009"/>
        <property type="gene ID" value="BROFUL_01280"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00092">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VWFA" evidence="1">
        <location>
            <begin position="45"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="220" mass="24354" checksum="5ADAA1ACB875B637" modified="2015-11-11" version="1">MDKEKSILNSTNRKRDLTRYQDKQWVKKLEAASGKPVIMRRSFKNVYLLVDCSGSMAEGNKLEQAKHGAIGFAKEALEKEYSVGLIQFSSGAEHLLELQNELTCLNTKVESMTASGSTNMAAAIKIARDSLADKAGKKVICVITDGMPDDKKATFEAANELRMQGVEIMAIGTDDANKEFLEELANRKDLSLKVLRDELERGIISMAKMLPQTMDSNHGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZX5</accession>
    <name>A0A0M2UZX5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01211</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000131">
        <property type="protein sequence ID" value="KKO20069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20069">
        <property type="protein sequence ID" value="KKO20069"/>
        <property type="gene ID" value="BROFUL_01211"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1501"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025639">
        <property type="entry name" value="DUF4338"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002559">
        <property type="entry name" value="Transposase_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032806">
        <property type="entry name" value="YbfD_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01609">
        <property type="entry name" value="DDE_Tnp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13808">
        <property type="entry name" value="DDE_Tnp_1_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14236">
        <property type="entry name" value="DUF4338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="245"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4338" evidence="4">
        <location>
            <begin position="21"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="domain" description="DDE_Tnp_1_assoc" evidence="3">
        <location>
            <begin position="226"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="domain" description="DDE_Tnp_1" evidence="2">
        <location>
            <begin position="327"/>
            <end position="436"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF14236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="450" mass="51804" checksum="551243C84DF6606D" modified="2015-11-11" version="1">MNHEETRKSVVPSGGLHGIEVRPIRREERTRWDELMRQYHYLGLHSLIGESIRYLAIHQGQWLALIGWSAAALKCKVRDRWIGWPCFLQYRRLSFVANNSRFLIFPHVRIPNLASYVLARNLKRLSQDWQTIYNHPIYLAETFVDPRSFKGTCYKAQGWEFLGYTRGFAKCAHRYYSHNQPKMVFVRPVLPDGKRKLSEPYLETRNTPKEVKPMRLSLKDAESLKERLSQIPDPRLSRGKRHRKLSVMTLSLCALLCSATSFAAIAEWAKSCSQNMLKRLGCRLNPKTGIYEPPSEPTIRRFLQDVDAEAVDTALYGWLQSLAGEDTALAIDGKTLKGAYQENGQKIHLLSAFLQQKGVVIAQCPVDQKTNEIPTLKTLLDPLDIKDKVVTLDALHTQKETARYLVEDKKADYLFTVKDNQPTLRQHIEDLRLVSFPPSAQNHRQTSRTH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZZ9</accession>
    <name>A0A0M2UZZ9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00738</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000093">
        <property type="protein sequence ID" value="KKO20536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20536">
        <property type="protein sequence ID" value="KKO20536"/>
        <property type="gene ID" value="BROFUL_00738"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.932"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="238" mass="26708" checksum="DCEBF33DE2DD3B2A" modified="2015-11-11" version="1">MWKTNQNPAKKSNRSILLRESYREGGKVRKRTIANLSNCTSREIEAIKLALSHKEDLTALGALSGSVELQEGMSVGAIWSVYQVAKELGIEEALGKDFQGRLALWQVMARVINQGSRLSAVRLAQVHAAGDVLGMKRGFDENDLYDNLSWLSEHQAKIERTLFDARRAGKKPKLFLYDVTSSYVEGELNHFGEYGYNRDGKKGKKQIVIGMLCDEFGEPVSTEVFRGNTQDQRPLSLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V014</accession>
    <name>A0A0M2V014_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_00727</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000090">
        <property type="protein sequence ID" value="KKO20551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20551">
        <property type="protein sequence ID" value="KKO20551"/>
        <property type="gene ID" value="BROFUL_00727"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009740">
        <property type="term" value="P:gibberellic acid mediated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006597">
        <property type="entry name" value="Sel1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001440">
        <property type="entry name" value="TPR_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00515">
        <property type="entry name" value="TPR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00671">
        <property type="entry name" value="SEL1"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="7"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0939">Gibberellin signaling pathway</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0802">TPR repeat</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="repeat" description="TPR" evidence="5">
        <location>
            <begin position="56"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="5">
        <location>
            <begin position="124"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="5">
        <location>
            <begin position="158"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="5">
        <location>
            <begin position="192"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="5">
        <location>
            <begin position="226"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="5">
        <location>
            <begin position="260"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="5">
        <location>
            <begin position="294"/>
            <end position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00019143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="381" mass="43595" checksum="BF832C579302AD8F" modified="2015-11-11" version="1">MVKRISIAGIITLLLSQPYGFAKEVSLSGDRHFDDGRIDEAIHEYEKSLQKNKKQPEIYFKLGNAYYKKGNLEKALELFTIATQLKPDYAEAYQRMSEVSMQIGVPDDELKVCLKAVQKDPHNADAHLQLGMIYYKRNHSDEAKREYETTIGLDPKKAEAYFNLGVLYQDVNTHDKALEMYKKAIEVSPNYDKAHFNLGIAYYQTGHIEESISAYKRALEINPMYADAYVNLGIACFVNGKYSDAIEALRKALSQGSNIAKIHYYLGNVYHKMDETDTAIVEYKKAVEANSKLVAPHYNLGIIYLKKKMADQAIEEFTKVIILDHDYANAYLSRSKAYELKGDRVNAQNDYNSYQHAKSAFARIYKEEHLSTYYEGSNPDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V087</accession>
    <name>A0A0M2V087_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Ammonium transporter protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_00003</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ammonia transporter channel (TC 1.A.11.2) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000001">
        <property type="protein sequence ID" value="KKO21265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21265">
        <property type="protein sequence ID" value="KKO21265"/>
        <property type="gene ID" value="BROFUL_00003"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008519">
        <property type="term" value="F:ammonium transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029020">
        <property type="entry name" value="Ammonium/urea_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018047">
        <property type="entry name" value="Ammonium_transpt_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024041">
        <property type="entry name" value="NH4_transpt_AmtB-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00909">
        <property type="entry name" value="Ammonium_transp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01219">
        <property type="entry name" value="AMMONIUM_TRANSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0924">Ammonia transport</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="44"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="88"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="131"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="164"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="197"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="255"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="297"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="329"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="353"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="384"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="416"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="domain" description="Ammonium_transp" evidence="9">
        <location>
            <begin position="57"/>
            <end position="467"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO21265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="479" mass="51666" checksum="DEB4286216E02E3E" modified="2015-11-11" version="1">MSSILLIIFMIVVVYSGAVKHDKWLPCTCDLMHLEKGGCPMVDILARDIVLIVYIFWLIITGILVFFMQAGFAFLESGQVRSKNATHVYMKICANIGLGSLVWWLFGYAIFSGNWNYCLLGVTDPGHVDKLNVYGHWFTMWGFCLVSCSIASGSISERFSFKAYLIYVVLYCGFMYPFFGWLAWSAGPLLQWGYVDYAGSVVVHFQGGLTALIAAMIIGPRMEKYARMSRKTWLFEFGRGECYTIPGHNVSQTMLGVFILCVCFYGFNVGSVLVGSLCEPTSAETARKMLNILVNDLPTTTINVTMSMAGGILGSMFGGWLVNKKPDPLTTGNGAIAGMVSICAGVGFAHPGFALVVGVISGGIIPLVVKSLDKIGIDDTVGTCGVHCTAGAIGGIATGIMGLIRPVYHGISCHIGVQALGFIICIAYSCVCAIIIFGGLKAIGLARVSEEDETMGLDISEHMTPTYPEFVSTGGMKGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0B7</accession>
    <name>A0A0M2V0B7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">16S rRNA (cytosine(967)-C(5))-methyltransferase</fullName>
            <ecNumber evidence="4">2.1.1.176</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">16S rRNA m5C967 methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">rRNA (cytosine-C(5)-)-methyltransferase RsmB</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BROFUL_01133</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>cytidine(967) in 16S rRNA + S-adenosyl-L-methionine = 5-methylcytidine(967) in 16S rRNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42748"/>
            <dbReference type="Rhea" id="RHEA-COMP:10219"/>
            <dbReference type="Rhea" id="RHEA-COMP:10220"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74483"/>
            <dbReference type="ChEBI" id="CHEBI:82748"/>
            <dbReference type="EC" id="2.1.1.176"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.176" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20174">
        <property type="protein sequence ID" value="KKO20174"/>
        <property type="gene ID" value="BROFUL_01133"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1403"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008649">
        <property type="term" value="F:rRNA methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.940.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001678">
        <property type="entry name" value="MeTrfase_RsmB/NOP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035926">
        <property type="entry name" value="NusB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006027">
        <property type="entry name" value="NusB_RsmB_TIM44"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023267">
        <property type="entry name" value="RCMT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004573">
        <property type="entry name" value="rRNA_ssu_MeTfrase_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22807">
        <property type="entry name" value="PTHR22807"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01189">
        <property type="entry name" value="Methyltr_RsmB-F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01029">
        <property type="entry name" value="NusB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR02008">
        <property type="entry name" value="RCMTFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48013">
        <property type="entry name" value="SSF48013"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00563">
        <property type="entry name" value="rsmB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51686">
        <property type="entry name" value="SAM_MT_RSMB_NOP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 11" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 11" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="7 11" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="6 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SAM_MT_RSMB_NOP" evidence="12">
        <location>
            <begin position="191"/>
            <end position="493"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="11">
        <location>
            <begin position="291"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="11">
        <location>
            <position position="413"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="315"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="342"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="360"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012140"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00030399"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00031088"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51686"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO20174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="497" mass="55936" checksum="F504A51C56199746" modified="2015-11-11" version="1">MKNSSPETNVRHEAIRILRAIDEQEVFARELLSERCSRGDLSERDKGLLTELTNGVIRHRLTLDTIISSFSKIPLARIEPWIIYALRLGLYQIIFLDRIPSSAAVNTSVELVKKLTRRTDATRFTNAVLRSIERSIQKKSAPASEITDPRKALYRRENTWCTFHVPLFPSPDEALSSYLAMNYSHPEWLIQRWLSRYGKEKTMEICRSNNRAPELFLRINQRKISIREFTALLDQKGIPSHTVGNAVVVGDTAVSEIPGFAEGLFFVQDISAMKAAEFLKVDKSHTVLDLCAAPGGKTTHIAELLEGTGWIYAMDISPSRLQLVKENCRRMGIHNVSLVCGDASEDGAPFQMQFDRVLIDAPCSNTGVLARRAEARWRLKEGDIESLASLQYSILTAGAALMKPDGYLVYSTCSIEPEENQAIIKKFITQQDLGQILPIRGGEDGNKKTCEKTKTFHRHSADNEFSFYLDAEEYHLPGMTVGDGGYLARLCKRRPGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0H3</accession>
    <name>A0A0M2V0H3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Metallo cofactor biosynthesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_01064</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20214">
        <property type="protein sequence ID" value="KKO20214"/>
        <property type="gene ID" value="BROFUL_01064"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1328"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023885">
        <property type="entry name" value="4Fe4S-binding_SPASM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030894">
        <property type="entry name" value="Ahb_Proteobacteria"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034479">
        <property type="entry name" value="AhbC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017200">
        <property type="entry name" value="PqqE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023867">
        <property type="entry name" value="Sulphatase_maturase_rSAM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13186">
        <property type="entry name" value="SPASM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037420">
        <property type="entry name" value="PQQ_syn_pqqE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00543">
        <property type="entry name" value="alternative_heme_biosynthesis"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01384">
        <property type="entry name" value="thioether_bond_formation_requi"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04546">
        <property type="entry name" value="rSAM_ahbC_deAc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04085">
        <property type="entry name" value="rSAM_more_4Fe4S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="7">
        <location>
            <begin position="36"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023601"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="408" mass="46173" checksum="B4668C09257F2533" modified="2015-11-11" version="1">MIGISKLYCGTVEPSDALRYGRESKKLPSHLLQFSHDKKPVVVWNVGQRCNLKCIHCYSQSKDIEYPNELTTNDAKAMLDDLADYGAPVILFSGGEPLMRTDLLELIGYAKEKGLRAVISTNGTLITREKANELKKFGLSYVGISLDGLKETNDRFRGIPGAFDAALEGIRNCMSAGIKVGLRFTINKRNAHDIAGIFQLIEQENIPRVCFYHLVYSGRGSNLIEEDLSHKETREVVDLIINKTKEAHDKGRKIEVLTVDNHADGPYVYMRLLKENPKRAKEVYELLQMNEGNSSGKGLACISWDGEVHADQFWRQYSFGNVRKRKFSEIWEDISNELMAKLKNKNPYIKGRCAKCKWLNICSGNFRARAEAYYGDMWEHDPACYLTDEEIGIESGSPKKARQKVTVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0Y1</accession>
    <name>A0A0M2V0Y1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00895</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000109">
        <property type="protein sequence ID" value="KKO20374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20374">
        <property type="protein sequence ID" value="KKO20374"/>
        <property type="gene ID" value="BROFUL_00895"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glycos_transf_1" evidence="1">
        <location>
            <begin position="174"/>
            <end position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="302" mass="35526" checksum="DC7EB18D4DB347B8" modified="2015-11-11" version="1">MKIAFITNLCTHYRYKLYKLLTEKHNFDMYFFDDENKTKEDIKHLKVFYDDRFYYLPTKSILVKLFKKKYDVIIKCTNNKWSFIGCFLLAKLIKAKFIVWHTIWYYPETLQYKLFSWFLIKVLKEYSDAIVVYGEHGKRFLINKGVDPNKIFIAWQTVDNETFGREVKDDEITLIKQKFNITKDKKIVLYVGRLTELKGIEYLLEALNKLNKDDFSFVAIGHGNLKNRVEKYCKDNEIDYRLIGIIPNSDLPPYYKLATVFVLPSITTKTFKEPWGLVVNEAFNQGCPVVVTDAVGAGVGGW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V143</accession>
    <name>A0A0M2V143_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00402</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000054">
        <property type="protein sequence ID" value="KKO20866.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20866">
        <property type="protein sequence ID" value="KKO20866"/>
        <property type="gene ID" value="BROFUL_00402"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.501"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008482">
        <property type="entry name" value="DUF763"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38597">
        <property type="entry name" value="PTHR38597"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05559">
        <property type="entry name" value="DUF763"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20866.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="347" mass="38601" checksum="310E60591A7755E9" modified="2015-11-11" version="1">MKTGIAHLPLHGGKAPSWLFQRMKRLAREITIAVVSEYGPQEMLRRLSDPFWFQAFGCVLGFDWHSSGVTTTTCGALKEGMKGLEVELGLFIAGGKGGTSRKTPSEIIRAGGHLSCDPEKLVYASRMSAKVDSSAVQDGYQLYHHAFIFTKSGDWAVVQQGMNDASKYARRYHWLGSRVANFVVEPHQAICCDSRGDTLNMVAVASEEARQSAVILSQLKPGVLVGEIKKIQHLHLPSRHHVDIRDIHPDRLYKIFVKTYEQAPENFESLLGMEGVGPKTIRALALISEIVYGKSPSFHDPVRYSFAHGGKDGHPYPVDREVYDRTIEIFRNALRQAKVGNNEKVDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2V7</accession>
    <name>A0A0M2V2V7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00268</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000031">
        <property type="protein sequence ID" value="KKO21019.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21019">
        <property type="protein sequence ID" value="KKO21019"/>
        <property type="gene ID" value="BROFUL_00268"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21019.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="58" mass="6861" checksum="CE2BED002FE24A98" modified="2015-11-11" version="1">MAVLRYEMMNDPTETKIPMQDIFHNSLLVELVHSVAFAIYYKTMIVCAMVTEWLCYKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPQ7</accession>
    <name>A0A0M2UPQ7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03425</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000313">
        <property type="protein sequence ID" value="KKO17877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17877">
        <property type="protein sequence ID" value="KKO17877"/>
        <property type="gene ID" value="BROFUL_03425"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="49" mass="5830" checksum="18F80E7413C91E20" modified="2015-11-11" version="1">MHRWYHLEFGCQFHVEFRDGSLAVILKAFCKVLPELLRDFVQEAPAPRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQD2</accession>
    <name>A0A0M2UQD2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03222</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000294">
        <property type="protein sequence ID" value="KKO18092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18092">
        <property type="protein sequence ID" value="KKO18092"/>
        <property type="gene ID" value="BROFUL_03222"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="105"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="69"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="271" mass="30954" checksum="D846C5A3C06A5DA0" modified="2015-11-11" version="1">MTKGSDSREFFEIFKPMQKAEDVQKNEVKSQEEPTEVSHQPKPVTPNEKTADKAASTADPLGWIKKTSGEEPFLKESRKETQPVFTHGKEDRPLRKDEVVLRQETLIIGAIAATFLSIACFFIGHKVGYNKGILSQAEEWLETIEPQEAKKPVFKQSIPENIPEKTVAKPAPPQTEKQNEQPKPIIKDTWTLRVVSYKNTKENLEKAKAWQKQSRKLLTMMRLLSIVVRKFSFVSVSLRKLIAPIYLLHKRLLPSLSIKTRDNLRDVIPSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQE7</accession>
    <name>A0A0M2UQE7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03428</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000313">
        <property type="protein sequence ID" value="KKO17880.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17880">
        <property type="protein sequence ID" value="KKO17880"/>
        <property type="gene ID" value="BROFUL_03428"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17880.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="60" mass="6874" checksum="D0ED66D480D32F99" modified="2015-11-11" version="1">MFLKNYQIKVVSELKRFFQTTRETKDAIETARKALPGNLRHTLTDCPRIGILANSRVVSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQG0</accession>
    <name>A0A0M2UQG0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative glycosyl transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03209</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000293">
        <property type="protein sequence ID" value="KKO18107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18107">
        <property type="protein sequence ID" value="KKO18107"/>
        <property type="gene ID" value="BROFUL_03209"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="7"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="293" mass="34688" checksum="CCF9439017A55DFE" modified="2015-11-11" version="1">MTEKIYILLPVHNRRDMTRRFIECLRIQTFRQYHLVLIDDGSKDGTEEMVRKLISSITTLKGYGNWWWAGSLQHGYEWLKSQNLPLNDVVLIINDDTNFEADFLEKAMYLLRKYSKTLLLAQCYNQKTRELIDAGVHVDWRKLAFERVAIPEEINCLSTRGLFLRVSDFFEIGGFYPRLLPHYLSDYEFTIRAQRKGMKLMTDPLLRLWLDEDATGYRQFKNGSFIDFLKKYFSKKSALNPLILTIFIALACPWQWKFPNWLRVWKGAVYQMIGFLRAALRKPIKVNLNEPHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQK2</accession>
    <name>A0A0M2UQK2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Helicase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02884</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18378.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18378">
        <property type="protein sequence ID" value="KKO18378"/>
        <property type="gene ID" value="BROFUL_02884"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3572"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140658">
        <property type="term" value="F:ATP-dependent chromatin remodeler activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10810">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038718">
        <property type="entry name" value="SNF2-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000330">
        <property type="entry name" value="SNF2_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00176">
        <property type="entry name" value="SNF2-rel_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0347">Helicase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="1">
        <location>
            <begin position="1"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="2">
        <location>
            <begin position="273"/>
            <end position="422"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18378.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="497" mass="56711" checksum="B35802C4059C313C" modified="2015-11-11" version="1">MLELITRGLIKRILILVPPSLVQQWKEETFFKCNLEFVTSDEKEFRSQGSVAWRKFDRIIASIHTAKKSPHADAIQQETFDLIIVDEAHHLKNANTVGWKFLNSLKKKYIFLLTATPVQNNLEELFNLVTLVYPGELGTLKSFKKQFVSAGDRLTPKNYEQLRSLLGELIIRNRRATSDVKFTKRYAKTIRIPLSKGERELYTSVSELVRNQYAGSPQQVKMTLRILQEEIGSIPPAAVSTLEGLRDKLPDNAVIADLVSQCNRLASSEKVRVLIDVINKIPDKAIIFTKFRASHSAITTALKKYDISYSPLHGGLTRLEKEKSIKEFQHVSKVLVATDVGSEGRNLQFCNHIINFDLPWNPMKIEQRIGRISRIGQEKEVHVTNLSAKDTIEDYILYLLDAKINMFELVIGEIDVILGRLDEETDFETLIMDAWTKSPDMKHFENEINQLGEDLLAAKQKYSTLKDTEDKIFGDEFNTTTAEKTITEGSEDEHRDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR00</accession>
    <name>A0A0M2UR00_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Flagellar biosynthesis protein FlhA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7 8" type="primary">flhA</name>
        <name evidence="8" type="ORF">BROFUL_03019</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18292">
        <property type="protein sequence ID" value="KKO18292"/>
        <property type="gene ID" value="BROFUL_03019"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3727"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044780">
        <property type="term" value="P:bacterial-type flagellum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042194">
        <property type="entry name" value="FHIPEP_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042193">
        <property type="entry name" value="FHIPEP_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042196">
        <property type="entry name" value="FHIPEP_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025505">
        <property type="entry name" value="FHIPEP_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006301">
        <property type="entry name" value="FlhA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001712">
        <property type="entry name" value="T3SS_FHIPEP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30161">
        <property type="entry name" value="PTHR30161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00771">
        <property type="entry name" value="FHIPEP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005419">
        <property type="entry name" value="FlhA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00949">
        <property type="entry name" value="TYPE3IMAPROT"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01398">
        <property type="entry name" value="FlhA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00994">
        <property type="entry name" value="FHIPEP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1005">Bacterial flagellum biogenesis</keyword>
    <keyword evidence="7" id="KW-1006">Bacterial flagellum protein export</keyword>
    <keyword evidence="3 7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0966">Cell projection</keyword>
    <keyword evidence="8" id="KW-0969">Cilium</keyword>
    <keyword evidence="8" id="KW-0282">Flagellum</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0653">Protein transport</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="47"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="78"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="119"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="205"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="246"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="284"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="306"/>
            <end position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU364093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="694" mass="75546" checksum="995ED421D25548C3" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URH0</accession>
    <name>A0A0M2URH0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_03076</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000285">
        <property type="protein sequence ID" value="KKO18230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18230">
        <property type="protein sequence ID" value="KKO18230"/>
        <property type="gene ID" value="BROFUL_03076"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004462">
        <property type="entry name" value="Desulfoferrodoxin_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038094">
        <property type="entry name" value="Desulfoferrodoxin_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06397">
        <property type="entry name" value="Desulfoferrod_N"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0249">Electron transport</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Desulfoferrod_N" evidence="5">
        <location>
            <begin position="3"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="domain" description="Desulfoferrod_N" evidence="5">
        <location>
            <begin position="54"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF06397"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="93" mass="10246" checksum="2B49390C7D032A34" modified="2015-11-11" version="1">MAKKGQTYFCEICRQKVVVTREGFGVLVCCGQEMHLVGAKGMMATWTAAHHKPEDGVKFQCDVCGQQIDVIVETTGILECCGQRMHRIEANVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URI1</accession>
    <name>A0A0M2URI1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02624</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18673">
        <property type="protein sequence ID" value="KKO18673"/>
        <property type="gene ID" value="BROFUL_02624"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="357" mass="40081" checksum="E6D9C444F7E5D468" modified="2015-11-11" version="1">MLGTPNTGIRMAARIAIYGGTDLPRELVEFVRCLTRSFLAIQDVVLVSGGFKCFKKYPDRISVDLAVLRAAKRYISQPQDFDQRFETWLPAEKLDRPSDQVERFAEGTVHRIPGTDQARRFNLVRAADGLVTIIGKGNTRTVLELALALDKPALPIAFTGGDSKSLWDANREEFIKSLNLHPQLTSRLQGDPPPLAEVEGLAKEIAQAVYEAAKKRCLVLMPFGSEHDDFYQNVLRDAIERANYIPYRIDIDAYAGNIPSLFLSSLECARSVVVDVTGRNPNVMYELGQVHARGINPLIIDRRQQSKMDAGAMPFYLRHEKLVSEENNEAGHRRIANVLTQYLNAVAKNADEYRRQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URI7</accession>
    <name>A0A0M2URI7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">4Fe-4S ferredoxin iron-sulfur binding subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_02629</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18678">
        <property type="protein sequence ID" value="KKO18678"/>
        <property type="gene ID" value="BROFUL_02629"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1060.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028261">
        <property type="entry name" value="DPD_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009051">
        <property type="entry name" value="Helical_ferredxn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003813">
        <property type="entry name" value="MvhD/FlpD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14691">
        <property type="entry name" value="Fer4_20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13187">
        <property type="entry name" value="Fer4_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02662">
        <property type="entry name" value="FlpD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="486"/>
            <end position="515"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="517"/>
            <end position="545"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18678.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="690" mass="75574" checksum="9297E4C92D3F284A" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US00</accession>
    <name>A0A0M2US00_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Acetyl-CoA decarbonylase/synthase complex subunit gamma</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_02446</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000232">
        <property type="protein sequence ID" value="KKO18853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18853">
        <property type="protein sequence ID" value="KKO18853"/>
        <property type="gene ID" value="BROFUL_02446"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3041"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046356">
        <property type="term" value="P:acetyl-CoA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007202">
        <property type="entry name" value="4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016041">
        <property type="entry name" value="Ac-CoA_synth_d_su_TIM-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016218">
        <property type="entry name" value="AcylCoA_decarb/synth_gsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011005">
        <property type="entry name" value="Dihydropteroate_synth-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03599">
        <property type="entry name" value="CdhD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04060">
        <property type="entry name" value="FeS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000376">
        <property type="entry name" value="AcCoA_decarb_gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51717">
        <property type="entry name" value="SSF51717"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51656">
        <property type="entry name" value="4FE4S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 6" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="3 6" id="KW-0408">Iron</keyword>
    <keyword evidence="4 6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S" evidence="7">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="region of interest" description="5-methoxybenzimidazolylcob(I)amide binding" evidence="5">
        <location>
            <begin position="370"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="17"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="20"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="25"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="42"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="340"/>
        </location>
        <ligand>
            <name>5-methoxybenzimidazolylcob(I)amide</name>
            <dbReference type="ChEBI" id="CHEBI:157765"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="346"/>
        </location>
        <ligand>
            <name>5-methoxybenzimidazolylcob(I)amide</name>
            <dbReference type="ChEBI" id="CHEBI:157765"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="433"/>
        </location>
        <ligand>
            <name>5-methoxybenzimidazolylcob(I)amide</name>
            <dbReference type="ChEBI" id="CHEBI:157765"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000376-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000376-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="446" mass="48118" checksum="391170E46925CD62" modified="2015-11-11" version="1">MALTGLDIYKLLPKTNCKKCGRPTCLAFAMQLAQKKANLSDCPDVSEEAKKVLGAAAAPPIKLVTVGSGARQVQVGEENVLFRHEEKFYHPTGVAVTIDDDLSEAAFNDRLKKINSLKLTRVGTEIEIDLIAIINKSNAADKFAEAAKKVSAGSHLNIILSSASADNMKAALQNCAEKRPLIHGAGAGNCEAMAALAQEKKCPMTVTAQALEELTDLAERAKKAGVEEIILDVGGGNPKEVLQKLTKVRRLALKKNFRALGFPMITFVCDEDPFQEIALASTYLLKYAGIVAVNACEPWAIMPLLTARTNIFTDPQKPIQVEPRLYAVGDVKDDSPILFTTNFSLTYYTVEGEVESSRVPAYILSVDTGGTSVLTAYSGDKLNDKVVAKAMTDAQVDTKVKHKKLIIPGLVAVMSGKLQETLGWEILVGPREASGLPSYLKTVWKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US08</accession>
    <name>A0A0M2US08_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Nitrite and sulphite reductase 4Fe-4S subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02864</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000270">
        <property type="protein sequence ID" value="KKO18430.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18430">
        <property type="protein sequence ID" value="KKO18430"/>
        <property type="gene ID" value="BROFUL_02864"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3547"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.413.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005117">
        <property type="entry name" value="NiRdtase/SiRdtase_haem-b_fer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036136">
        <property type="entry name" value="Nit/Sulf_reduc_fer-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006067">
        <property type="entry name" value="NO2/SO3_Rdtase_4Fe4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045169">
        <property type="entry name" value="NO2/SO3_Rdtase_4Fe4S_prot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045854">
        <property type="entry name" value="NO2/SO3_Rdtase_4Fe4S_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006066">
        <property type="entry name" value="NO2/SO3_Rdtase_FeS/sirohaem_BS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11493">
        <property type="entry name" value="PTHR11493"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00037">
        <property type="entry name" value="Fer4"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01077">
        <property type="entry name" value="NIR_SIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03460">
        <property type="entry name" value="NIR_SIR_ferr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55124">
        <property type="entry name" value="SSF55124"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56014">
        <property type="entry name" value="SSF56014"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00365">
        <property type="entry name" value="NIR_SIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0349">Heme</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="6">
        <location>
            <begin position="164"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="6">
        <location>
            <begin position="194"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18430.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="296" mass="32836" checksum="7F798C0BCB6B87BF" modified="2015-11-11" version="1">MAEKSAKQRVDLNELKSGGFIKQNQKDLFTVRLKVPGGRITPEKLAQIAEIAKKYSRMGFCHLSFRQSVEIVGVHIDDFDAVVKELAAVGQKVASCGPRVRVPTACGGCEYNPNGIMDTQSKALEVDEKFFGIPCPHKFKIGFSGCPIDCTRTREMDLGFQGVVYPVWSKDLCNGCTLCAKACQEGAIISDKEGRPVFDESKCVYCGDCIRACPTDAWKDKKKGWLVRTGGKHGRHPREADSVLNFLPDNKVNDFVDATVKWYKENGKPKERMGSCIDRVGLEKFKKDVVGAFLKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US81</accession>
    <name>A0A0M2US81_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Secretory pathway protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">BROFUL_02320</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the GSP K family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18928">
        <property type="protein sequence ID" value="KKO18928"/>
        <property type="gene ID" value="BROFUL_02320"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.40.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005628">
        <property type="entry name" value="GspK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038072">
        <property type="entry name" value="GspK_central_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010994">
        <property type="entry name" value="RuvA_2-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38831">
        <property type="entry name" value="PTHR38831"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03934">
        <property type="entry name" value="T2SSK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002786">
        <property type="entry name" value="XcpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158544">
        <property type="entry name" value="SSF158544"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47781">
        <property type="entry name" value="SSF47781"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0653">Protein transport</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="50"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="11">
        <location>
            <begin position="50"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007246"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO18928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="315" mass="35768" checksum="3B5354301F6B64AC" modified="2015-11-11" version="1">MVLGFIAVSFTRNTSVAIKTEITFTERVKNIYAARGACLYATRKLVQPKNQQEDVKSRKSSELKKKRDAERGGDTRRYDKKSSVWIPSNNPYSIRIGERDCEVLISDESGKINVNKLTDDMRTNFIKFLTSFKLEELVAETITDSILDWLDEDDLHHINGAEKDFYATLPDPYEPQNGPFESLEELTLVKGITPPIFDLIRDRLTIYGSGKINVNFASKEVLLFVPEMTKEIAESIIRVRKKRGKIKNLSILKAIFKHVGVIGKEYEEMIKYVTLDTSDYITIHSIASSGKIKSGYKLLVLKSVGNCKILAVYPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USD5</accession>
    <name>A0A0M2USD5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Putative nitrate oxidoreductase gamma subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_02532</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18752.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18752">
        <property type="protein sequence ID" value="KKO18752"/>
        <property type="gene ID" value="BROFUL_02532"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019020">
        <property type="entry name" value="Cyt-c552/DMSO_Rdtase_haem-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09459">
        <property type="entry name" value="EB_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0249">Electron transport</keyword>
    <keyword evidence="2" id="KW-0349">Heme</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644143" evidence="6">
        <location>
            <begin position="28"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="domain" description="EB_dh" evidence="7">
        <location>
            <begin position="69"/>
            <end position="306"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF09459"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18752.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="323" mass="36271" checksum="665954DD2A919115" modified="2015-11-11" version="1">MKKTYSFLKRYGVALLSCAFLSTVLFAADETPGVKGPSDEEFIPAKEVLNIKYVDVGKPYHLDVETLHAFFNDAKGVTVPFQKQDKAFPNGGGSIANAEVRAIHDGLTVYFKVSWSDPTKNARAIAVQEFRDAVALMFPLGAVEITPAEHFSPRMGDREKPTNLWHWKADWEADLLVKGELEDVEAQYPNMHDDFNLNPYSAYYHRELITSVEVLSGGRAANNLLSQPWRGRSVEDLNAEGFGTLTTQDHQDVNGCSKYEDGAWTVIFYRPLITNDPHDVQFVPGGTSYFNIAVWNGGEQDRNGQKNISIQWHPVTLERVAWQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USG5</accession>
    <name>A0A0M2USG5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Trehalose/maltose binding protein MalE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">malE</name>
        <name evidence="2" type="ORF">BROFUL_02518</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000236">
        <property type="protein sequence ID" value="KKO18777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18777">
        <property type="protein sequence ID" value="KKO18777"/>
        <property type="gene ID" value="BROFUL_02518"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3128"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006059">
        <property type="entry name" value="SBP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01547">
        <property type="entry name" value="SBP_bac_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="429" mass="49592" checksum="58DB22F9B7C32377" modified="2015-11-11" version="1">MSTMKFNLKKAIIVSIYLMVGVWIAYTFFRVRKTDEVVFNIGAGTEEIRFVKKLIEKFEGENPAIKVTLNVLPAPTDQQHHYYITTLGTKSTDIDVMRIDTTWIAEFASAGWLESLDNYLNKEDRASFIPVTEKTNVFQGALHAIPWDANVGLLYYRKDLLERYKMKPPDTWGELIETSAKISDSESIYGYLWQGKQYEGLVCNFIEFMSSKNGGIIDNAGHIIIDSEQNTIMLDLMRDLIWKYRISPQNTYSELAEESSRHLFQQGKALFLRNWTYVWELCQEDPSMKGRVGVSQLPRLPEGKPASVYGGWHLAINAHSEKKEPAWRLIQFLTSYEAQKELAIQVSWMPSRKALYKDPELMEKLPFLPVVESALQDVQIRPTVPYYQWISEILQKYVNKALSNQISSKEALKIIRAKLEEIKRDFTKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USH0</accession>
    <name>A0A0M2USH0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02728</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000253">
        <property type="protein sequence ID" value="KKO18580.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18580">
        <property type="protein sequence ID" value="KKO18580"/>
        <property type="gene ID" value="BROFUL_02728"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008969">
        <property type="entry name" value="CarboxyPept-like_regulatory"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49464">
        <property type="entry name" value="SSF49464"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005643978" evidence="1">
        <location>
            <begin position="26"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18580.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="114" mass="11974" checksum="E5F58FDB467A90D7" modified="2015-11-11" version="1">MFKKICAGFLGVALVAGIGMTKVQAYQVKPAKLWVTAIAIGTPIEGAEIKVGDNTCTTGKNGTCVFELRPGSYEISVHEHGGASAHTSVNLEEKDIRFISLDLGSAALHPSGHH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USH5</accession>
    <name>A0A0M2USH5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02718</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000252">
        <property type="protein sequence ID" value="KKO18585.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18585">
        <property type="protein sequence ID" value="KKO18585"/>
        <property type="gene ID" value="BROFUL_02718"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18585.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="49" mass="5496" checksum="C4E3179C382D66CD" modified="2015-11-11" version="1">MVKYVFNKLKSFLPVALVIFGWIAFTFGIVINGHFCLKLVLLSVARALP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USQ0</accession>
    <name>A0A0M2USQ0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02686</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000246">
        <property type="protein sequence ID" value="KKO18625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18625">
        <property type="protein sequence ID" value="KKO18625"/>
        <property type="gene ID" value="BROFUL_02686"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034466">
        <property type="entry name" value="Methyltransferase_Class_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01123">
        <property type="entry name" value="methyltransferase_(Class_B)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Radical SAM core" evidence="2">
        <location>
            <begin position="199"/>
            <end position="423"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="438" mass="50536" checksum="96A84938E67ADD2D" modified="2015-11-11" version="1">MPRETILLTILPVTWPHMPPVGLGYLQAFLSQKDIHADLIDFNHLFYTLSDQQLQKQWLVSCNTFYEENILSLIQQRHFKEFQDAVERMLTYGTVGFSCFKSNFKTTLSIAGILKSKKDTIKIVLGGPEITRQYFREKGNLSQELLQRADYLIVGEGEIPLYQYLIDNSTCKKIAAFRQLDDLTGLPFPRYTGINMNAYPRKNTVPIQFSRGCIRRCNFCSERLLYKNFRTRPASSLMEEIQYHKINNKTQYFVFYDSLINADLKKLHALCDGIIERFGSIHWEAQIAIRNDMNEKLFEKMRQSGCYSLFVGLESGSDDTLKNMNKGFSAEAAINFFIKLHTAGIFFGVSIIVGYPGETDQDFQNTVDFIIRHKSMIPQIAQINPFTYYDGTSANETADYRVNPTAIKRMDILVHEIKRYKIKHTNAFIGNLIEKCVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USU8</accession>
    <name>A0A0M2USU8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">PA14 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_02314</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18922">
        <property type="protein sequence ID" value="KKO18922"/>
        <property type="gene ID" value="BROFUL_02314"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2879"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019962">
        <property type="entry name" value="CHP03663"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037524">
        <property type="entry name" value="PA14/GLEYA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011658">
        <property type="entry name" value="PA14_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038731">
        <property type="entry name" value="RgtA/B/C-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR41710">
        <property type="entry name" value="PTHR41710"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07691">
        <property type="entry name" value="PA14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13231">
        <property type="entry name" value="PMT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00758">
        <property type="entry name" value="PA14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03663">
        <property type="entry name" value="TIGR03663"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51820">
        <property type="entry name" value="PA14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="9"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="67"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="107"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="134"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="180"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="225"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="276"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="308"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="332"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="365"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="domain" description="PA14" evidence="9">
        <location>
            <begin position="521"/>
            <end position="657"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51820"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO18922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="662" mass="75810" checksum="9D5EA99AE7F29D8F" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USY6</accession>
    <name>A0A0M2USY6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02146</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19163.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19163">
        <property type="protein sequence ID" value="KKO19163"/>
        <property type="gene ID" value="BROFUL_02146"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2675"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="354"/>
            <end position="478"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19163.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="516" mass="59353" checksum="87C6FCFA545915AD" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT34</accession>
    <name>A0A0M2UT34_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02306</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO19012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19012">
        <property type="protein sequence ID" value="KKO19012"/>
        <property type="gene ID" value="BROFUL_02306"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2870"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035402">
        <property type="entry name" value="DUF1611-N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035086">
        <property type="entry name" value="DUF1611_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011669">
        <property type="entry name" value="UCP026760"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40690">
        <property type="entry name" value="PTHR40690"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07755">
        <property type="entry name" value="DUF1611"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17396">
        <property type="entry name" value="DUF1611_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF026760">
        <property type="entry name" value="UCP026760"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1611_N" evidence="2">
        <location>
            <begin position="44"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1611" evidence="1">
        <location>
            <begin position="142"/>
            <end position="339"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17396"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="348" mass="37958" checksum="6795197E27EA7CAC" modified="2015-11-11" version="1">MNSIQNRRLVILTEGRLDLFSAKTAVSVIRYCKEDVVALVDRVNAGNDPESVIGIGKGIPIVPAIGDALHLKPNALLIGIAPPGGMLPPEWRKHITDALRNGLHIISGLHCHLNDDREFRQLANEHHVKIWDVRNPSDEIPLGTGKAKNTRTLRILTVGSDCNIGKMVTSIEITGAARQRGINACFVATGQTGIMIDGSGIAVDHVVSDFISGAAEKLVLDRAQYQLLSIEGQGTIVHPAYSGVTLGLLHGSAPQGLILCHQPTRKTLRHFNDFPILPLSYLIDLYEKLAQPVYPCRVLGISLNCFGMTDRDALQEIQRVERETKLPATDPIKFGVSKFIDSIHPLLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT37</accession>
    <name>A0A0M2UT37_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Prephenate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03195</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18146">
        <property type="protein sequence ID" value="KKO18146"/>
        <property type="gene ID" value="BROFUL_03195"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008977">
        <property type="term" value="F:prephenate dehydrogenase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004665">
        <property type="term" value="F:prephenate dehydrogenase (NADP+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006571">
        <property type="term" value="P:tyrosine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003099">
        <property type="entry name" value="Prephen_DH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02153">
        <property type="entry name" value="PDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51176">
        <property type="entry name" value="PDH_ADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Prephenate/arogenate dehydrogenase" evidence="1">
        <location>
            <begin position="4"/>
            <end position="285"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="289" mass="31275" checksum="7EBE02AEED869F4F" modified="2015-11-11" version="1">MQFGTVCIIGPGLIGGSVGLGLKKRDLAKAVIGVGHKASSIENALKMQAIDSGTLDIDSAVKDADIVILATAVDKIIDTATRVIPLMKGNAILTDVGSTKNEIVKQITRTLREDIAFVGSHPIAGSEQRGVEYASSDLFAGCNCILTPPSRHAKGVETIASLWQLLGARIIYLSPEQHDEILAYVSHLPHLIASCLVNSIKQEHLVYAASGLRDTTRVASGDPELWINIFDQNRENVIRSIDQLMAELTGFRNDLVKRNDASLLDRLTKAKVSRDSVFHNNSKNQGMNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT47</accession>
    <name>A0A0M2UT47_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acyltransferase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02513</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000235">
        <property type="protein sequence ID" value="KKO18790.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18790">
        <property type="protein sequence ID" value="KKO18790"/>
        <property type="gene ID" value="BROFUL_02513"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002656">
        <property type="entry name" value="Acyl_transf_3_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01757">
        <property type="entry name" value="Acyl_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="30"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="63"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="127"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="151"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="176"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="202"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="231"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="273"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="303"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl_transf_3" evidence="2">
        <location>
            <begin position="6"/>
            <end position="320"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01757"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18790.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="347" mass="40064" checksum="3CED6696824F91C2" modified="2015-11-11" version="1">MFGMYRTLLALLVVLSHLGGIPVIGGYAVFAFYILSGYLITLIMQKTYGYSRVGFFRYALNRFLRIFPMYWFSCLISIVLILWVGKEFTINYCDALYIPENVRSTINNLFIVFPNSTKDMPRLTPPTWALSIECFFYLCIGLGLSKTRRLVLIWFFLSVAYHIGVNLLGLSFAYKYTIITAASLPFSTGALIYFYKDTFLKAFAFLRNPFMPYLLIFLFFLNWYLGYQLHALYGISFYINYVLNATMIISLAERTSLPWIPKRIDAQIGDYSYPIYLIHYQAGLILLIILAVFGIRVTRPNGLLMITSIPLIFAVSWVLIIIIEHPIELVRVRIKTRGFKSSRTITT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT60</accession>
    <name>A0A0M2UT60_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Multidrug resistance protein MdtH</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">mdtH</name>
        <name evidence="7" type="ORF">BROFUL_03120</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000287">
        <property type="protein sequence ID" value="KKO18171.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18171">
        <property type="protein sequence ID" value="KKO18171"/>
        <property type="gene ID" value="BROFUL_03120"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3851"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="44"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="87"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="154"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="180"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="224"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="258"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="287"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="21"/>
            <end position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18171.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="338" mass="36421" checksum="40C8972F93598954" modified="2015-11-11" version="1">MSNHALSDTGNTSRTKKTAALKFIILLGVVSLFADVTYEGARSINGPFLALLGASATTVGFVAGLGELIGYSLRLVSGYMSDKIGRYWAITLFGYTLNMLAVPALALAGRWEIAVVLMVMERIGKAIRTPARDAMLSHATREIGRGKGFGLHEALDQIGAVLGPLTVAGVLYFRAGYRTGYAILFVPASITLSILLAARWFYPQPKNLEVPQPELEAKGLPKKFWLYLIAVAFIAAGYADFPLIAYHFRKASVASDTWIPLFYAIAMGVDAIAALFFGYLFDRNGISILIIASLLSMLFAPLVFFGNFSVAIIGVALWGMGMGAQESIMRAAIAEMVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT69</accession>
    <name>A0A0M2UT69_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Purine nucleoside phosphorylase</fullName>
            <shortName evidence="1">PNP</shortName>
            <ecNumber evidence="1">2.4.2.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03134</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Purine nucleoside phosphorylase involved in purine salvage.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a purine D-ribonucleoside + phosphate = a purine nucleobase + alpha-D-ribose 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:19805"/>
            <dbReference type="ChEBI" id="CHEBI:26386"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57720"/>
            <dbReference type="ChEBI" id="CHEBI:142355"/>
            <dbReference type="EC" id="2.4.2.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Purine metabolism; purine nucleoside salvage.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homohexamer. Dimer of a homotrimer.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="1">Although this enzyme belongs to the family of MTA phosphorylases based on sequence homology, it lacks several conserved amino acids in the substrate binding pocket that confer specificity towards MTA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the PNP/MTAP phosphorylase family. MTAP subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.1" evidence="1"/>
    <dbReference type="EMBL" id="LAQJ01000287">
        <property type="protein sequence ID" value="KKO18181.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18181">
        <property type="protein sequence ID" value="KKO18181"/>
        <property type="gene ID" value="BROFUL_03134"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3866"/>
    <dbReference type="UniPathway" id="UPA00606"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017061">
        <property type="term" value="F:S-methyl-5-thioadenosine phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006166">
        <property type="term" value="P:purine ribonucleoside salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd09010">
        <property type="entry name" value="MTAP_SsMTAPII_like_MTIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01963">
        <property type="entry name" value="MTAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010044">
        <property type="entry name" value="MTAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000845">
        <property type="entry name" value="Nucleoside_phosphorylase_d"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035994">
        <property type="entry name" value="Nucleoside_phosphorylase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42679">
        <property type="entry name" value="PTHR42679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01048">
        <property type="entry name" value="PNP_UDP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53167">
        <property type="entry name" value="SSF53167"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01694">
        <property type="entry name" value="MTAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="1" id="KW-0660">Purine salvage</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PNP_UDP_1" evidence="2">
        <location>
            <begin position="6"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphate binding" evidence="1">
        <location>
            <begin position="54"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphate binding" evidence="1">
        <location>
            <begin position="87"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="1">
        <location>
            <begin position="209"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="12"/>
        </location>
        <ligand>
            <name>phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="185"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="186"/>
        </location>
        <ligand>
            <name>phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
        </ligand>
    </feature>
    <feature type="site" description="Important for substrate specificity" evidence="1">
        <location>
            <position position="167"/>
        </location>
    </feature>
    <feature type="site" description="Important for substrate specificity" evidence="1">
        <location>
            <position position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18181.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="287" mass="31493" checksum="08470DF74C201EE3" modified="2015-11-11" version="1">MGEQMVGIIGGSGLYNIEGIKDVKSVSIETPFGKPSDSFTVGTLEGRRIAFLPRHGKGHTILPSELNFRANIYGMKKLGAEHIIAVSAVGSMKEEIKPLDIVIPDQFFDRTRGRISTFFGEGIVGHVSFADPICGILADTLYHAAKSTGTQTHKGGTYLCMEGPLFSTRAESHVYRQWGVSIIGMTNLQEAKLAREAEICYSTLAMATDYDCWHVSEEVVTLEMIIGNLNKNAETAKRILKAAIPKIELKRTCTCATAVQNAIVTHKDLIPESTKKKLDIIFGKYLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT88</accession>
    <name>A0A0M2UT88_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02491</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18830">
        <property type="protein sequence ID" value="KKO18830"/>
        <property type="gene ID" value="BROFUL_02491"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3094"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016811">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011697">
        <property type="entry name" value="Peptidase_C26"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044668">
        <property type="entry name" value="PuuD-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43235">
        <property type="entry name" value="PTHR43235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07722">
        <property type="entry name" value="Peptidase_C26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="252" mass="27997" checksum="7A930B81CF268B02" modified="2015-11-11" version="1">MKPIIGINCDYKEEGKQPCSFIYRNYVDSIIAAGGIPLVLPIIKDENDVRNSLKRIDGLILSGGEDVPPQRYGKERHQKTLCVHPDKDISDNLLVHSAIQMKKPILAICYGTQLINVAFGGSLIQDIPSQVTSPVIHKDPQNKHHIHTVKIEKRSRLHTIVGTEYIETNSVHHQAIDTLGNGLIATACTKDGMIEAIELEGYPFLVGVQWHPERMTSDPCHAALFSALVIASEPYSKGAFFRNDTENFHAEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTC0</accession>
    <name>A0A0M2UTC0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 9">Acyl carrier protein</fullName>
            <shortName evidence="7">ACP</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">acpP</name>
        <name evidence="11" type="ORF">BROFUL_01968</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7 9">Carrier of the growing fatty acid chain in fatty acid biosynthesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7 9">Lipid metabolism; fatty acid biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="7">4'-phosphopantetheine is transferred from CoA to a specific serine of apo-ACP by AcpS. This modification is essential for activity because fatty acids are bound in thioester linkage to the sulfhydryl of the prosthetic group.</text>
    </comment>
    <comment type="PTM">
        <text evidence="9">4'-phosphopantetheine is transferred from CoA to a specific serine of apo-ACP by acpS.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the acyl carrier protein (ACP) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19308.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19308">
        <property type="protein sequence ID" value="KKO19308"/>
        <property type="gene ID" value="BROFUL_01968"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2451"/>
    <dbReference type="UniPathway" id="UPA00094"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000036">
        <property type="term" value="F:acyl carrier activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1200.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01217">
        <property type="entry name" value="Acyl_carrier"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036736">
        <property type="entry name" value="ACP-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003231">
        <property type="entry name" value="Acyl_carrier"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009081">
        <property type="entry name" value="PP-bd_ACP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006162">
        <property type="entry name" value="Ppantetheine_attach_site"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20863">
        <property type="entry name" value="PTHR20863"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00550">
        <property type="entry name" value="PP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47336">
        <property type="entry name" value="SSF47336"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00517">
        <property type="entry name" value="acyl_carrier"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50075">
        <property type="entry name" value="CARRIER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00012">
        <property type="entry name" value="PHOSPHOPANTETHEINE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 7" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="4 7" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="2 7" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="5 7" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="1 7 8" id="KW-0596">Phosphopantetheine</keyword>
    <keyword evidence="3 7" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Carrier" evidence="10">
        <location>
            <begin position="2"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="modified residue" description="O-(pantetheine 4'-phosphoryl)serine" evidence="7 8">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00258"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO19308.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="77" mass="8736" checksum="2E0E2D1B56634EB5" modified="2015-11-11" version="1">MSAVEDKVKEIITKQMGVKTEQITKETAFINDLGADSLDTVELIMEFEDAFDMNIPDEDAEKIRTVGDAIKYIEEHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTC3</accession>
    <name>A0A0M2UTC3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">CRISPR type III-B/RAMP module-associated protein Cmr5</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_02411</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the CRISPR system Cmr5 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000231">
        <property type="protein sequence ID" value="KKO18865.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18865">
        <property type="protein sequence ID" value="KKO18865"/>
        <property type="gene ID" value="BROFUL_02411"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.520.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023101">
        <property type="entry name" value="AF1862-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010160">
        <property type="entry name" value="CRISPR-assoc_prot_Cmr5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09701">
        <property type="entry name" value="Cas_Cmr5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158568">
        <property type="entry name" value="SSF158568"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00030001"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18865.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="132" mass="14778" checksum="5E598F0224134AD7" modified="2015-11-11" version="1">MADITGTDGGKKLQPASVARGGKVLPLMQEMIQKLDETKVNFLKGLPPMIMQNGLGQTIAYLQSKEGYEDIVDVFKKLFGEDNLIDAILNMEVKEYALRQKEAIEYAGWMKKFALAFYIKTNKERGDETPAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTC6</accession>
    <name>A0A0M2UTC6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">NADH dehydrogenase I subunit M</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_03082</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 3">Membrane</location>
            <topology evidence="1 3">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the complex I subunit 4 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000285">
        <property type="protein sequence ID" value="KKO18236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18236">
        <property type="protein sequence ID" value="KKO18236"/>
        <property type="gene ID" value="BROFUL_03082"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3808"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042773">
        <property type="term" value="P:ATP synthesis coupled electron transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010227">
        <property type="entry name" value="NADH_Q_OxRdtase_chainM/4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003918">
        <property type="entry name" value="NADH_UbQ_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001750">
        <property type="entry name" value="ND/Mrp_mem"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43507">
        <property type="entry name" value="PTHR43507"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00361">
        <property type="entry name" value="Proton_antipo_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01437">
        <property type="entry name" value="NUOXDRDTASE4"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01972">
        <property type="entry name" value="NDH_I_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="6"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="28"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="71"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="110"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="163"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="204"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="243"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="274"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="303"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="334"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="373"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="408"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="453"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="domain" description="Proton_antipo_M" evidence="5">
        <location>
            <begin position="127"/>
            <end position="417"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009025"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU000320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="519" mass="58688" checksum="7396C0B12BDB5D3C" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTD1</accession>
    <name>A0A0M2UTD1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Membrane-bound lytic murein transglycosylase F</fullName>
            <ecNumber evidence="7">4.2.2.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">mltF</name>
        <name evidence="7" type="ORF">BROFUL_03087</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell outer membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.2.-" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000285">
        <property type="protein sequence ID" value="KKO18241.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18241">
        <property type="protein sequence ID" value="KKO18241"/>
        <property type="gene ID" value="BROFUL_03087"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3813"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001638">
        <property type="entry name" value="Solute-binding_3/MltF_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008258">
        <property type="entry name" value="Transglycosylase_SLT_dom_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00497">
        <property type="entry name" value="SBP_bac_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01464">
        <property type="entry name" value="SLT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00062">
        <property type="entry name" value="PBPb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="5 7" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="domain" description="PBPb" evidence="6">
        <location>
            <begin position="55"/>
            <end position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18241.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="487" mass="54600" checksum="66114D83B6187576" modified="2015-11-11" version="1">MAGQLIRLLGCIGILALFALCTKAREATPNPSLDVAGRIMQPLTGDYDEMVGRRVIRVLVIFGKTSYFIDHGRQRGITYDAFHEFEKFVNEREKTKSRKIHIVFIPVSCDQLITGLTEGRGDIAAANLTITGGRLDLVDFSDPLVKDVRELVITGHGLPTLTSLDNLSGMKIFVRRSSSYYESLENLNASLKTAGRAGVVITTANENLEDEDLLEMVNSGLIPATVADSHLAEFWRQIFANLRVHENLVLRTGGSIAWAVRKNNPRLKEVLNEFVKGHKKGTTFGNILIKRYLKDTKYLRNVLSPTEIQRFNETAALIRKYADKYAFDWLLIGAQAYQESRLDQSLRSPAGAVGVMQIKPSTAEGHPIDVKHVERLENNINAGVKYLQHIRDQYFDDPGIDPFNRQIFAFAAYNAGPARIAGLRKKATAMGFDKNKWFKNVEIVAAKEIGQETVQYVGNILKYYVAYQRSIAQKELKEHAKAQIETP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTG6</accession>
    <name>A0A0M2UTG6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Heavy metal efflux pump</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01935</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000197">
        <property type="protein sequence ID" value="KKO19363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19363">
        <property type="protein sequence ID" value="KKO19363"/>
        <property type="gene ID" value="BROFUL_01935"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2406"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2090.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027463">
        <property type="entry name" value="AcrB_DN_DC_subdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001036">
        <property type="entry name" value="Acrflvin-R"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32063">
        <property type="entry name" value="PTHR32063"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00873">
        <property type="entry name" value="ACR_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00702">
        <property type="entry name" value="ACRIFLAVINRP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82714">
        <property type="entry name" value="SSF82714"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="163"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="185"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="212"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="258"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="298"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="353"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="713"/>
            <end position="732"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="739"/>
            <end position="760"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="766"/>
            <end position="790"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="820"/>
            <end position="836"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="848"/>
            <end position="872"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="895" mass="99577" checksum="18BA277A6AFA5BD0" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTI1</accession>
    <name>A0A0M2UTI1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5 7">30S ribosomal protein S9</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpsI</name>
        <name evidence="9" type="ORF">BROFUL_02160</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the universal ribosomal protein uS9 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000214">
        <property type="protein sequence ID" value="KKO19117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19117">
        <property type="protein sequence ID" value="KKO19117"/>
        <property type="gene ID" value="BROFUL_02160"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2697"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00532_B">
        <property type="entry name" value="Ribosomal_S9_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000754">
        <property type="entry name" value="Ribosomal_S9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023035">
        <property type="entry name" value="Ribosomal_S9_bac/plastid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020574">
        <property type="entry name" value="Ribosomal_S9_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21569">
        <property type="entry name" value="PTHR21569"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00380">
        <property type="entry name" value="Ribosomal_S9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00360">
        <property type="entry name" value="RIBOSOMAL_S9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="124"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="8">
        <location>
            <begin position="127"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016789"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003816"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="145" mass="16240" checksum="FE4710AB0E3E4E27" modified="2015-11-11" version="1">MGKQICPCLFEEEKVTGEQYYWGTGRRKSSIARVRIKKGNGKIMVNDKDLDTYFPINRDRGIVQFPLKTTMTLGEFDVLANVRGGGITGQAGAISLGIARALFKSNPTFVGSLRGSGLLTRDSRMKERKKYGKKGARKSFQWTKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTJ9</accession>
    <name>A0A0M2UTJ9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03043</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18316">
        <property type="protein sequence ID" value="KKO18316"/>
        <property type="gene ID" value="BROFUL_03043"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="173" mass="20289" checksum="70A10C6783D33878" modified="2015-11-11" version="1">MTVDVKKLERALPVHAYGKDKAKSFRQLLNEIATGETQIIWQENRPIRLLSIVVVKVHCRDKTLVEDRQVFPDGRVRYRGIEGLSEKLHPQEEHSKGVYRALQEELGFSADELQGISIQFLGREWEKKESLSYPGLESHYDTYTYEVHIPDTLYKPEYTELCEEGMHSYFTWK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTM6</accession>
    <name>A0A0M2UTM6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7 8">Transcription elongation factor GreA</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Transcript cleavage factor GreA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">greA</name>
        <name evidence="11" type="ORF">BROFUL_02358</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 7 8">Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 8">Belongs to the GreA/GreB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18965">
        <property type="protein sequence ID" value="KKO18965"/>
        <property type="gene ID" value="BROFUL_02358"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2928"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070063">
        <property type="term" value="F:RNA polymerase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032784">
        <property type="term" value="P:regulation of DNA-templated transcription, elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00105">
        <property type="entry name" value="GreA_GreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036953">
        <property type="entry name" value="GreA/GreB_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018151">
        <property type="entry name" value="TF_GreA/GreB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006359">
        <property type="entry name" value="Tscrpt_elong_fac_GreA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028624">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001437">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023459">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022691">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036805">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30437">
        <property type="entry name" value="PTHR30437"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01272">
        <property type="entry name" value="GreA_GreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03449">
        <property type="entry name" value="GreA_GreB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46557">
        <property type="entry name" value="SSF46557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01462">
        <property type="entry name" value="greA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00830">
        <property type="entry name" value="GREAB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7 8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7 8" id="KW-0804">Transcription</keyword>
    <keyword evidence="3 7 8" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="GreA_GreB_N" evidence="10">
        <location>
            <begin position="586"/>
            <end position="656"/>
        </location>
    </feature>
    <feature type="domain" description="GreA_GreB" evidence="9">
        <location>
            <begin position="666"/>
            <end position="737"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00024916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00105"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF03449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO18965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="740" mass="85774" checksum="D1642F243A0FBC34" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU38</accession>
    <name>A0A0M2UU38_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02196</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000218">
        <property type="protein sequence ID" value="KKO19100.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19100">
        <property type="protein sequence ID" value="KKO19100"/>
        <property type="gene ID" value="BROFUL_02196"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.450.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038573">
        <property type="entry name" value="BrnT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007460">
        <property type="entry name" value="BrnT_toxin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04365">
        <property type="entry name" value="BrnT_toxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19100.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="110" mass="12706" checksum="2A147B34AA9204A5" modified="2015-11-11" version="1">MRPDFEWDKETAKANLKKHRVCFEEATTVFLDPFSMTIPDPDHSVEEQRFIDIGSSDKGRVLVVVYTERGSSMRIISCRKATPSERTLYEEGRALKYGIPKWLKISPLRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUB7</accession>
    <name>A0A0M2UUB7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">4Fe-4S domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_03245</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000296">
        <property type="protein sequence ID" value="KKO18074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18074">
        <property type="protein sequence ID" value="KKO18074"/>
        <property type="gene ID" value="BROFUL_03245"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007202">
        <property type="entry name" value="4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024264">
        <property type="entry name" value="DUF3786"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12654">
        <property type="entry name" value="DUF3786"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04060">
        <property type="entry name" value="FeS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51656">
        <property type="entry name" value="4FE4S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S" evidence="5">
        <location>
            <begin position="1"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="230" mass="25909" checksum="2607B50C22F598FD" modified="2015-11-11" version="1">MLEIYKKLPRTNCGKCGVPTCMAFALKVQSAQLRIDACPYVTKENRELDTPKPAVTMEDNYDRVSSELEAEAKRTNFKEAAIATGGHFATGKDGEMIKLTMLNKPYEMRKEGLFENDAYCSDSWSKIIIYDYIRRKGNKPFTGNWVTLGYFPHTASHVKAFQRSAEEKVAAAFNNKMNGLKTRCKELGGRETQGKMKQTISANLTSYPGYPYICASGMRMKSLRPVASFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUC0</accession>
    <name>A0A0M2UUC0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Mono(ADP-ribosyl)transferase SpvB</fullName>
            <ecNumber evidence="5">2.4.2.31</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">spvB</name>
        <name evidence="5" type="ORF">BROFUL_02104</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.31" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000210">
        <property type="protein sequence ID" value="KKO19195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19195">
        <property type="protein sequence ID" value="KKO19195"/>
        <property type="gene ID" value="BROFUL_02104"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2625"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106274">
        <property type="term" value="F:NAD+-protein-arginine ADP-ribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003284">
        <property type="entry name" value="Sal_SpvB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03534">
        <property type="entry name" value="SpvB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0964">Secreted</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0843">Virulence</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19195.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="404" mass="45228" checksum="AA8F78A0458DA429" modified="2015-11-11" version="1">MPKEQQKPSDTKEPPPEKGPAQAPAIQLPKGGGAIRGIGEKFAANPVTGTGSMTVPIATSPGRSGFGPQLSLSYDSGAGNGPFGFGWSLSLPSITRKTDKGLPKYQDAEESDVFILSGAEDLVPVLKEVNGKWERETLPPRAVDGKTYRIQRYRPRIEGLFARIERWTNQNDLTDTFWRSISKDNITTWYGKTAESRIADPANPTRIFSWLICQSYDDKGNVIVYRYKEETSDNIDLAQAHERNRTDDINEKDKSNRTANRYLKRILYGNRVPYLPGLTPTGWPQPPDSTAGVNPPNYFFEVVFDYEDGHYTEDNPDTEGRIFARPVYSPPQNAKWPARSIPFRRTAPVSRCARIACASESSCFTISLMSLAHQTILCVPRTLPTLTKTTQVTHVIRSIPFWIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUF7</accession>
    <name>A0A0M2UUF7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Big_5 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02697</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000248">
        <property type="protein sequence ID" value="KKO18611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18611">
        <property type="protein sequence ID" value="KKO18611"/>
        <property type="gene ID" value="BROFUL_02697"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014755">
        <property type="entry name" value="Cu-Rt/internalin_Ig-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032812">
        <property type="entry name" value="SbsA_Ig"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13205">
        <property type="entry name" value="Big_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Big_5" evidence="2">
        <location>
            <begin position="2"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="68" mass="6719" checksum="8FF03452D5C80F2E" modified="2015-11-11" version="1" fragment="single">MTAPTVSATSPVSNETNVAVNGAITVTFSEAMDANTLTTATFSLTDGVTPVTGAVSYTGTTATFTPTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUT3</accession>
    <name>A0A0M2UUT3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7">50S ribosomal protein L18</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7 8" type="primary">rplR</name>
        <name evidence="8" type="ORF">BROFUL_01907</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S and 23S rRNAs.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the universal ribosomal protein uL18 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19380.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19380">
        <property type="protein sequence ID" value="KKO19380"/>
        <property type="gene ID" value="BROFUL_01907"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2376"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01337_B">
        <property type="entry name" value="Ribosomal_L18_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005484">
        <property type="entry name" value="Ribosomal_L18"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004389">
        <property type="entry name" value="Ribosomal_L18_bac-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12899">
        <property type="entry name" value="PTHR12899"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00861">
        <property type="entry name" value="Ribosomal_L18p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00060">
        <property type="entry name" value="L18_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 7 8" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 7" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00029548"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19380.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="119" mass="13534" checksum="5C7DF7C79EEE8A6D" modified="2015-11-11" version="1">MDHIKEKLRKRTRRHLRIRQKVVGTSERPRLSVCRTLKNIYCQIINDLDGRTLVAASTQSPDIRSLIPYGGNVKAAEIVGKKIAEEAKKKGITKVVFDKGGYKYHGRIKALARVHEKTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUW9</accession>
    <name>A0A0M2UUW9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NifU domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01882</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000194">
        <property type="protein sequence ID" value="KKO19420.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19420">
        <property type="protein sequence ID" value="KKO19420"/>
        <property type="gene ID" value="BROFUL_01882"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034904">
        <property type="entry name" value="FSCA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001075">
        <property type="entry name" value="NIF_FeS_clus_asmbl_NifU_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01106">
        <property type="entry name" value="NifU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117916">
        <property type="entry name" value="SSF117916"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NifU" evidence="1">
        <location>
            <begin position="5"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19420.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="73" mass="7941" checksum="211A89791EAABEDB" modified="2015-11-11" version="1">MKEKIEEALKSIRPALQADGGDIELVDVQDGVVKVRLRGACGTCPSALMTLKYGVEERLKEEIPEVKSVELAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV30</accession>
    <name>A0A0M2UV30_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Squalene-hopene cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02439</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Secondary metabolite biosynthesis; hopanoid biosynthesis.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000232">
        <property type="protein sequence ID" value="KKO18846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18846">
        <property type="protein sequence ID" value="KKO18846"/>
        <property type="gene ID" value="BROFUL_02439"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3031"/>
    <dbReference type="UniPathway" id="UPA00337"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005811">
        <property type="term" value="C:lipid droplet"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016866">
        <property type="term" value="F:intramolecular transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016104">
        <property type="term" value="P:triterpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02892">
        <property type="entry name" value="SQCY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006400">
        <property type="entry name" value="Hopene-cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032696">
        <property type="entry name" value="SQ_cyclase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032697">
        <property type="entry name" value="SQ_cyclase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018333">
        <property type="entry name" value="Squalene_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008930">
        <property type="entry name" value="Terpenoid_cyclase/PrenylTrfase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11764">
        <property type="entry name" value="PTHR11764"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13243">
        <property type="entry name" value="SQHop_cyclase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13249">
        <property type="entry name" value="SQHop_cyclase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01016">
        <property type="entry name" value="Prenyltransferase_Like_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48239">
        <property type="entry name" value="SSF48239"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01507">
        <property type="entry name" value="hopene_cyclase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01787">
        <property type="entry name" value="squalene_cyclas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="SQHop_cyclase_N" evidence="4">
        <location>
            <begin position="64"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="domain" description="SQHop_cyclase_C" evidence="3">
        <location>
            <begin position="360"/>
            <end position="678"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004999"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13243"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="683" mass="77709" checksum="926B94F2323AE4AC" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV41</accession>
    <name>A0A0M2UV41_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01374</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000141">
        <property type="protein sequence ID" value="KKO19923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19923">
        <property type="protein sequence ID" value="KKO19923"/>
        <property type="gene ID" value="BROFUL_01374"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1695"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006139">
        <property type="entry name" value="D-isomer_2_OHA_DH_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029753">
        <property type="entry name" value="D-isomer_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029752">
        <property type="entry name" value="D-isomer_DH_CS1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006140">
        <property type="entry name" value="D-isomer_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00389">
        <property type="entry name" value="2-Hacid_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02826">
        <property type="entry name" value="2-Hacid_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00065">
        <property type="entry name" value="D_2_HYDROXYACID_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00670">
        <property type="entry name" value="D_2_HYDROXYACID_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00671">
        <property type="entry name" value="D_2_HYDROXYACID_DH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2-Hacid_dh" evidence="4">
        <location>
            <begin position="6"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="domain" description="2-Hacid_dh_C" evidence="5">
        <location>
            <begin position="112"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005854"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003719"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="326" mass="35818" checksum="55FA225167C64ABE" modified="2015-11-11" version="1">MMPLNVYITRQIPDEGVNVLKKACQKVEVNPHDRPLTYDEMLKEVRGRDAIITMLSNRVDARLMQEATNLKIVANYAVGYDNIDVKAATVRGIVVTNTPGVLADSTADMAWALLFSVTRRIVEGDKLTRAGQFTGWAPMMLLGGDLVGKTLGIIGAGRIGTAMAMRSRGWCMKVLYTTQSRRNTVLEEMLGAKRVDLETLLKESDFISIHTPLSEKTRHLIGSQEFSTMKRTAYLINTGRGAVIDEDALVQALRNRQIAGAGLDVYEEEPKLKPGLAELDNVVLAPHLGSATVETRTKMSLMAAENIIAVLNRQKPPNCVNPEALT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV46</accession>
    <name>A0A0M2UV46_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Transcriptional repressor NrdR</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">nrdR</name>
        <name evidence="10" type="ORF">BROFUL_02933</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR-boxes.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="7">Binds 1 zinc ion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the NrdR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000276">
        <property type="protein sequence ID" value="KKO18369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18369">
        <property type="protein sequence ID" value="KKO18369"/>
        <property type="gene ID" value="BROFUL_02933"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3630"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00440">
        <property type="entry name" value="NrdR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005144">
        <property type="entry name" value="ATP-cone_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003796">
        <property type="entry name" value="RNR_NrdR-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30455">
        <property type="entry name" value="PTHR30455"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03477">
        <property type="entry name" value="ATP-cone"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00244">
        <property type="entry name" value="TIGR00244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51161">
        <property type="entry name" value="ATP_CONE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 7 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0678">Repressor</keyword>
    <keyword evidence="6 7" id="KW-0804">Transcription</keyword>
    <keyword evidence="4 7" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="7" id="KW-0862">Zinc</keyword>
    <keyword evidence="7" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="ATP-cone" evidence="9">
        <location>
            <begin position="49"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="zinc finger region" evidence="7">
        <location>
            <begin position="3"/>
            <end position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00440"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO18369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="169" mass="19710" checksum="65358A716D51470B" modified="2015-11-11" version="1">MQCLFCKVDNDKVINSRTSVDGLSIKRRRECLGCGRRYTTYERIEESPLRVVKKDGIRESFDRRKILKGLEKACEKRPVSTDTMENIVNEIEREIYNQFDREVTTNFVGSLVMQKLKILDAVAYVRFASVYREFKDISEFIDELKPLMTGEKKKKKDGGNDSRSISLQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV54</accession>
    <name>A0A0M2UV54_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01330</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000139">
        <property type="protein sequence ID" value="KKO19938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19938">
        <property type="protein sequence ID" value="KKO19938"/>
        <property type="gene ID" value="BROFUL_01330"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1645"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009378">
        <property type="term" value="F:four-way junction helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032423">
        <property type="entry name" value="AAA_assoc_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008921">
        <property type="entry name" value="DNA_pol3_clamp-load_cplx_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021886">
        <property type="entry name" value="MgsA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008824">
        <property type="entry name" value="RuvB-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16193">
        <property type="entry name" value="AAA_assoc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12002">
        <property type="entry name" value="MgsA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05496">
        <property type="entry name" value="RuvB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48019">
        <property type="entry name" value="SSF48019"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="3">
        <location>
            <begin position="57"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19938.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="447" mass="50077" checksum="B7C7BDCA2342EE0C" modified="2015-11-11" version="1">MTTTKKLQKNLFNIKPGTIKKAPLADRMRPRDLQEFIGQEHLVGAGKILHRLVENKELVSLIFWGPPGVGKTTLAFIVAQAMDAHFVSFSAVLSGVKDIRVVIEEAKEQLRFYNKKTILFVDEIHRFNKAQQDAFLHHVEDGTITLIGATTENPSFEVNAPLLSRCKVLVLEQLTNDHIKVIMKNALRDKERGLGNLNVAVDDDAFDFIARLAQGDARVALNSLEAAVMLEKPDEERNRNVTLATAQEAMQRKALLYDKGGEEHYNVISAFIKSMRGSDPDAALYWLARMLEAGEEPLFVARRMVIFASEDIGNADPQALQLAIAVKDAFDFVGMPEGWIPLAQGVTYLACAPKSNASYLSYLEALKDVREKGALPVPLHIRNAPTSLMKDLGYGMGYKYPHSFGGYVEQVYLPEELQGKEYYKPTDHGFDKVIKERLVSYKKGRKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV58</accession>
    <name>A0A0M2UV58_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Helicase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01335</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000139">
        <property type="protein sequence ID" value="KKO19943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19943">
        <property type="protein sequence ID" value="KKO19943"/>
        <property type="gene ID" value="BROFUL_01335"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="129" mass="14856" checksum="5A6DCA3B5836C7E9" modified="2015-11-11" version="1">MDLMGVGHPLVDALISHYRSDAISGDVLKLKNDGIPDFFSVRYLFMVNFEDGIKKELYKEFILSGSQMKSDVELLMQQEWKENHAVSNLKETDEQISLLIRNFEAQLRSECEGILNVRTTCVGIMHIYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV59</accession>
    <name>A0A0M2UV59_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Nitrite extrusion protein narK</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">narK</name>
        <name evidence="9" type="ORF">BROFUL_01585</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the major facilitator superfamily. Nitrate/nitrite porter (TC 2.A.1.8) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000168">
        <property type="protein sequence ID" value="KKO19697.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19697">
        <property type="protein sequence ID" value="KKO19697"/>
        <property type="gene ID" value="BROFUL_01585"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015112">
        <property type="term" value="F:nitrate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042128">
        <property type="term" value="P:nitrate assimilation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044772">
        <property type="entry name" value="NO3_transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23515">
        <property type="entry name" value="PTHR23515"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0534">Nitrate assimilation</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="20"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="49"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="79"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="105"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="139"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="171"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="216"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="253"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="283"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="308"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="338"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="371"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="8">
        <location>
            <begin position="18"/>
            <end position="397"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19697.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="404" mass="44185" checksum="2DA542DD0C0404CF" modified="2015-11-11" version="1">MNMSANESIQTPNGNTRVMILATLAFALCFAGWTMFAPLAVYFQEEFNLSSTSVGLLLATPVLLGSLAKIPMGIVTDKYGGRLVFTIMLLFGFVSLFFTGFAHSYGSLLVCGFFFGLIGSSFAVGIPHVSEWYPKKKQGFALGVYGVGNAGTALSAFGAPFIAESMGWNKAFIIYAFPLLFMAFVYWFFTSNAPKSPNVKVSTLSDKLKLFKSSRLAWIFCLFYFMFFGFFVCFSIWLPSYLCDFYDISPVKAGSFTSIFVFLSSFTRIVGGYLGDRFNGRKIMMFLTVIVLVIAVFLNLNVSLVTSLMVFYIMGTCLGIGNGVVYKLVAEYFPKDTGAVGGLVGAAGGLGGFFLPIILGTIKDYTDNYSLGYIFVSLVCLMCLAFMEEKTLADANKKVANVVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV66</accession>
    <name>A0A0M2UV66_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Na+-translocating NADH-quinone reductase subunit B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_02900</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18394">
        <property type="protein sequence ID" value="KKO18394"/>
        <property type="gene ID" value="BROFUL_02900"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3593"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022900">
        <property type="term" value="P:electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004338">
        <property type="entry name" value="NqrB/RnfD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011303">
        <property type="entry name" value="RnfD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30578">
        <property type="entry name" value="PTHR30578"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03116">
        <property type="entry name" value="NQR2_RnfD_RnfE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01946">
        <property type="entry name" value="rnfD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0249">Electron transport</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4" id="KW-0288">FMN</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-1278">Translocase</keyword>
    <keyword evidence="5 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="66"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="92"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="140"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="169"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="225"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="264"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="288"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="317"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="342"/>
            <end position="361"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO18394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="367" mass="40145" checksum="C81F5E2F093B173D" modified="2015-11-11" version="1">MKKFLKPLEPLLDKGLNTTESFIHSHRNVHFLFGSLFGAIDGLLRSPKETAQAPPFIRSNYDVKRFMGAILVALTTGWVLPAMYLFGWQCVVFKLLISFVIGVFIVDVLWAILAREEHINEGGFVTCLFIPAILPPQAPLWLVGLGAALAIIFRNILGGVGNNLVNPALFSRLFLTICFPAFLVTGYQTPLVGIQDIHAVHQGLDAVTHATPFTAFKTSGEVASYLSLLLGTATGSLGETCRVALIVSGLWLIKIKVANWRIPASYLGSVFVFSVFFSLILGKAVAPPFFQLLSGGLILGAFFMATDPITTTYNQTAKWIFGAGCGFITVLIRDFTTLPEGVMYSILLMNLLAIPIQALMVKIRYRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVJ6</accession>
    <name>A0A0M2UVJ6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Thiamine monophosphate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02794</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000264">
        <property type="protein sequence ID" value="KKO18524.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18524">
        <property type="protein sequence ID" value="KKO18524"/>
        <property type="gene ID" value="BROFUL_02794"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3454"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004590">
        <property type="term" value="F:orotidine-5'-phosphate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006207">
        <property type="term" value="P:'de novo' pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04726">
        <property type="entry name" value="KGPDC_HPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd16841">
        <property type="entry name" value="RraA_family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017120">
        <property type="entry name" value="Bifunct_HPS/DMK_prd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041710">
        <property type="entry name" value="HPS/KGPDC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001754">
        <property type="entry name" value="OMPdeCOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005493">
        <property type="entry name" value="RraA/RraA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036704">
        <property type="entry name" value="RraA/RraA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00215">
        <property type="entry name" value="OMPdecase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03737">
        <property type="entry name" value="RraA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037137">
        <property type="entry name" value="HPS_DMK_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00934">
        <property type="entry name" value="OMPdecase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="SSF51366"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89562">
        <property type="entry name" value="SSF89562"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OMPdecase" evidence="2">
        <location>
            <begin position="4"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00934"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18524.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="429" mass="46350" checksum="0F1121E35700076E" modified="2015-11-11" version="1">MTVILQVALDFVDLHRAVRVAKESVEGGVDWLEIGTPLIKSEGMNAIRHMRSLFPHTTLVADMKTMDAGRAEMEMAAKAGADIAVVMADAQDSTIRECIEAGKNYGIKICVDCIHDAEIEERAADIEKWGAACLSVHTAIDDQMRGKTPFAVLQRISGRVKIPVAVAGGINSENVVDAVHAGASIIIVGGSITKARNAKAAAESIKSAILENRKIPTTLFKRVAREEVREALVKLSTANISDGSHRAQGITELYPLYPDIKIAGNAVTVRTYPGDWAKPVEAIDLAKEGDVIVIDAGGAGPAVWGELATHSALQKKISGVVVWGAVRDSAEIRKLKFPVFTRMVMPSAGEPKGFGEINIPLSLSGIRINPGDWILGDDDGLMVIPLSEADVWVNHGMDCLERENRIREEIVSEKSSLGKVMDVLKWERR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVQ3</accession>
    <name>A0A0M2UVQ3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Putative ferredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01642</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000172">
        <property type="protein sequence ID" value="KKO19645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19645">
        <property type="protein sequence ID" value="KKO19645"/>
        <property type="gene ID" value="BROFUL_01642"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00037">
        <property type="entry name" value="Fer4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12798">
        <property type="entry name" value="Fer4_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12800">
        <property type="entry name" value="Fer4_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12801">
        <property type="entry name" value="Fer4_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12838">
        <property type="entry name" value="Fer4_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="5"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="31"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="68"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="114"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="151"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="185"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="256"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="297"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="396"/>
            <end position="426"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="729" mass="82362" checksum="5B16A38C65CE934C" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVY3</accession>
    <name>A0A0M2UVY3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01278</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20007">
        <property type="protein sequence ID" value="KKO20007"/>
        <property type="gene ID" value="BROFUL_01278"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="31"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20007.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="152" mass="16967" checksum="E896F676CFEA24B7" modified="2015-11-11" version="1">MRKNIGMVLFFAFVTSFCVNESFADKGVKTEGAAGKEKAEGSHGKDKGAIEEGAGKDSTGRSQKKVEKRLNDLTAKLNLNAEQQNQIKEILIKSREDHMAAWAETKIKLKEVRRKAHAQIETLLTADQKEKFKGICKASEAQKQEEDIDEDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVY9</accession>
    <name>A0A0M2UVY9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02615</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18664.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18664">
        <property type="protein sequence ID" value="KKO18664"/>
        <property type="gene ID" value="BROFUL_02615"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3242"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006158">
        <property type="entry name" value="Cobalamin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036724">
        <property type="entry name" value="Cobalamin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034466">
        <property type="entry name" value="Methyltransferase_Class_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02310">
        <property type="entry name" value="B12-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01123">
        <property type="entry name" value="methyltransferase_(Class_B)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52242">
        <property type="entry name" value="SSF52242"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="B12-binding" evidence="2">
        <location>
            <begin position="11"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="3">
        <location>
            <begin position="204"/>
            <end position="442"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18664.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="529" mass="60549" checksum="E436CEF5F30410E0" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW12</accession>
    <name>A0A0M2UW12_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetyl-CoA synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01236</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000135">
        <property type="protein sequence ID" value="KKO20037.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20037">
        <property type="protein sequence ID" value="KKO20037"/>
        <property type="gene ID" value="BROFUL_01236"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1531"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043758">
        <property type="term" value="F:acetate-CoA ligase (ADP-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.261">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003781">
        <property type="entry name" value="CoA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043938">
        <property type="entry name" value="Ligase_CoA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032875">
        <property type="entry name" value="Succ_CoA_lig_flav_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016102">
        <property type="entry name" value="Succinyl-CoA_synth-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13380">
        <property type="entry name" value="CoA_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19045">
        <property type="entry name" value="Ligase_CoA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13607">
        <property type="entry name" value="Succ_CoA_lig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00881">
        <property type="entry name" value="CoA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52210">
        <property type="entry name" value="SSF52210"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CoA_binding" evidence="1">
        <location>
            <begin position="4"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20037.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="470" mass="51044" checksum="79F3D25B342E6998" modified="2015-11-11" version="1">MEVFFHPSSVAIVGATEKPGSLPGIILKNLLDMGFQGRMYPVNPKYETVFGLRCFPSLLDIPDEVALTVIAIPAPLVLEVVQQQARKCIHHAIIISAGFREMGVEGTKMEEEIKQVAIKNDIRILGPNCLGVLDNYANFTTSFLSWERVSYPKKGSLSILSQSGAFAIALLDLASQEGLGIAKMVNYGNRLDVGESALLPFLRDDAHTRVIAIYMESVDYGRRFIEAARSCSEKKPIVALKVGKGAAGIAAARSHTGAIAGNYAIYQAAFLKAGIIEANGLEEFIDGVKALSMQSPPRGNRILIVTNGGGFGVIVADHCSENGLDVPLPSAQLKEKLRNKLSAFYVVSNPVDLTGSACDRDYHTALTACMAESDEYDAAIIIPLMAPQGMTEKVVDLIADTMKRSGKPAVICTVGGAFTLKIKQLFEEREFPVYPSPERSAKAMSMLLKRRKLQEDVQRSSHTKLQSHKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW22</accession>
    <name>A0A0M2UW22_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FeoC like transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01008</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000119">
        <property type="protein sequence ID" value="KKO20263.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20263">
        <property type="protein sequence ID" value="KKO20263"/>
        <property type="gene ID" value="BROFUL_01008"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015102">
        <property type="entry name" value="Tscrpt_reg_HTH_FeoC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09012">
        <property type="entry name" value="FeoC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FeoC" evidence="1">
        <location>
            <begin position="2"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20263.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="73" mass="8423" checksum="4D9696540A296AA6" modified="2015-11-11" version="1">MILSELKRYLSERGMATLNDMAIHFDMEPDAVCGVLEHWIRKGKVRKHSEPVVKCKTCVKCDPAMIEVYEWVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW50</accession>
    <name>A0A0M2UW50_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative rubrerythrin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01486</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000152">
        <property type="protein sequence ID" value="KKO19800.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19800">
        <property type="protein sequence ID" value="KKO19800"/>
        <property type="gene ID" value="BROFUL_01486"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012347">
        <property type="entry name" value="Ferritin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003251">
        <property type="entry name" value="Rubrerythrin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02915">
        <property type="entry name" value="Rubrerythrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rubrerythrin" evidence="1">
        <location>
            <begin position="10"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19800.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="180" mass="20467" checksum="D6B5F4DD0496D572" modified="2015-11-11" version="1">MSDTLKEIKSIALQMETDGVKFYSELADKTLHPMGRAMFRSFVEDEKAHIKRLRALLSDHSGKSQAREKSQASPGERLVTIFKQMGEAAKKKVDAGANDIAAVKLAMELEEKGTAFYEKAARETEDAVERETYRFLAGEEKVHFSILKNTLDFLEKTALWEAEKEGRIYDMWIDMVNKKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW79</accession>
    <name>A0A0M2UW79_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RCK C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00955</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000116">
        <property type="protein sequence ID" value="KKO20323.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20323">
        <property type="protein sequence ID" value="KKO20323"/>
        <property type="gene ID" value="BROFUL_00955"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008324">
        <property type="term" value="F:cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006813">
        <property type="term" value="P:potassium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026278">
        <property type="entry name" value="K(+)/H(+)_antiporter_KhtT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006037">
        <property type="entry name" value="RCK_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036721">
        <property type="entry name" value="RCK_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02080">
        <property type="entry name" value="TrkA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005028">
        <property type="entry name" value="KhtT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF116726">
        <property type="entry name" value="SSF116726"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51202">
        <property type="entry name" value="RCK_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RCK C-terminal" evidence="1">
        <location>
            <begin position="76"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20323.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="168" mass="18959" checksum="9A1EB502164C3788" modified="2015-11-11" version="1">MSEIKESELPGIGKKFTLELDSGDKLVVVIHSSGEREVFKFTRDNDEPASVTTLADEEARQIGAILSGTYFQPVVEEEQKLAMKNATMEWIKIMPDSMLVNKKIEDLDIRRRTGVSITTIIRGETVMPNPNPGESIKPQDTLIVVGNNEQVKKFISTFEIKHRLENDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW87</accession>
    <name>A0A0M2UW87_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative heme protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01442</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000147">
        <property type="protein sequence ID" value="KKO19840.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19840">
        <property type="protein sequence ID" value="KKO19840"/>
        <property type="gene ID" value="BROFUL_01442"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015182">
        <property type="entry name" value="QH-AmDH_asu_heme-bd_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09098">
        <property type="entry name" value="Dehyd-heme_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644045" evidence="1">
        <location>
            <begin position="21"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="domain" description="Dehyd-heme_bind" evidence="2">
        <location>
            <begin position="36"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19840.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="239" mass="28134" checksum="5D9E62486EC8E254" modified="2015-11-11" version="1">MARNLLFLCFVFIVSFNVYGQTQEAQEKYQYKAPQFLYEEKCSKCHTLERIFSAPKTENEWRMCVTQMMGKSPLWITDQEGERIVGEIVHGRKDMTAITAQPKKYEDVHVLFIDRCTKCHTMTRILKQNKTGEEWQETILRMRENAPELFLDEDIPLLTGYLAERGKLLRDDVAARIMVEKCLVCHEAGRILLERKSRKGWEDCVVAMRVLAREKFHKDWFTSDEFRLIVDLLVRTQGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWG2</accession>
    <name>A0A0M2UWG2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">3-oxoacyl-[acyl-carrier-protein] synthase 3</fullName>
            <ecNumber evidence="7">2.3.1.180</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">3-oxoacyl-[acyl-carrier-protein] synthase III</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Beta-ketoacyl-ACP synthase III</fullName>
            <shortName evidence="7">KAS III</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">fabH</name>
        <name evidence="10" type="ORF">BROFUL_01966</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>acetyl-CoA + H(+) + malonyl-[ACP] = 3-oxobutanoyl-[ACP] + CO2 + CoA</text>
            <dbReference type="Rhea" id="RHEA:12080"/>
            <dbReference type="Rhea" id="RHEA-COMP:9623"/>
            <dbReference type="Rhea" id="RHEA-COMP:9625"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:78449"/>
            <dbReference type="ChEBI" id="CHEBI:78450"/>
            <dbReference type="EC" id="2.3.1.180"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Lipid metabolism; fatty acid biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="7">The last Arg residue of the ACP-binding site is essential for the weak association between ACP/AcpP and FabH.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the thiolase-like superfamily. FabH family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.180" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19306">
        <property type="protein sequence ID" value="KKO19306"/>
        <property type="gene ID" value="BROFUL_01966"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2449"/>
    <dbReference type="UniPathway" id="UPA00094"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004315">
        <property type="term" value="F:3-oxoacyl-[acyl-carrier-protein] synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033818">
        <property type="term" value="F:beta-ketoacyl-acyl-carrier-protein synthase III activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01815">
        <property type="entry name" value="FabH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013751">
        <property type="entry name" value="ACP_syn_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013747">
        <property type="entry name" value="ACP_syn_III_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004655">
        <property type="entry name" value="FabH_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08545">
        <property type="entry name" value="ACP_syn_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08541">
        <property type="entry name" value="ACP_syn_III_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00747">
        <property type="entry name" value="fabH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 7" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="4 7" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="2 7" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="5 7" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="ACP_syn_III" evidence="9">
        <location>
            <begin position="95"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="domain" description="ACP_syn_III_C" evidence="8">
        <location>
            <begin position="226"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="active site" evidence="7">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <feature type="active site" evidence="7">
        <location>
            <position position="241"/>
        </location>
    </feature>
    <feature type="active site" evidence="7">
        <location>
            <position position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF08541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF08545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="314" mass="33983" checksum="851628E8CE7710DB" modified="2015-11-11" version="1">MPGKVLTNYDLEKMVDTTDDWIIQRTGIKQRRIVENGQITSDLATQASLRAMEDAGVSPRDLDMIITSTITPDHIFPSTSCFIQQKIGATRAGAFDILAACAGFIYAMSIAQSFVNSGAVETVLVAGAECLSTITDYTDRTTCVLFGDGAGAVVIQKSLTQHEILSTSLAADGSQADILIMPGGGARSPASLESIQQRAHYIQFKGKEVFKLAIQNITSLILETVNKNNLTIEDIDLIIPHQSNLRIIEATMEKLGLPMEKAFVNIDKYGNTSSASIPIAIDEARREGRLRRGDLVMLVAFGGGLTWGSSVIRW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWH1</accession>
    <name>A0A0M2UWH1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Undecaprenyl-phosphate glucose phosphotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_01025</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial sugar transferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20177.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20177">
        <property type="protein sequence ID" value="KKO20177"/>
        <property type="gene ID" value="BROFUL_01025"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003362">
        <property type="entry name" value="Bact_transf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017475">
        <property type="entry name" value="EPS_sugar_tfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017473">
        <property type="entry name" value="Undecaprenyl-P_gluc_Ptfrase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02397">
        <property type="entry name" value="Bac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03025">
        <property type="entry name" value="EPS_sugtrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03023">
        <property type="entry name" value="WcaJ_sugtrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 9" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="51"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="83"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="115"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="282"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="domain" description="Bac_transf" evidence="8">
        <location>
            <begin position="280"/>
            <end position="459"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02397"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20177.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="467" mass="54306" checksum="9F7DD51C24884F0F" modified="2015-11-11" version="1">MLKKHSKFFESVLLLTDWLVLSGAWMLAYYLRFYSGIVPVLKGIPPFKTYLTLLIFMIPLWGIVFRIFGLYRPRRVSTKLSEVADIAKASTFATLILISLTFLFRQYDFSRLTFFYFWLINILSLSLTRILFREFLRFLRQKGYNQRYALILGTENFGQDLVKKLRKHPELGIRISGFLTHDPSRIGNTLHGIRVLGKYSDVRSFVVKLGIDIVFVALPFHAHNQLKEILDYLGDEMVSIMVLPDLFEFITLRGSVSEFEGMPLISLRDTPLYGWNIIVKRLLDIVVATIMLICTAPLIGVISLLTKITSHGPVFFKQERMGMDGKIFKMIKFRTMEVDAEVASGPVWTKRDDPRCTKIGKLLRRTSLDELPQFFNVLRGDMSIVGPRPERPVFINNFRNAIPKYMLRHKMKAGITGWAQVSGWRGNTSLEKRIEYDLYYIENWSLHFDLKIIWLTLWNGFINKHAY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWN1</accession>
    <name>A0A0M2UWN1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Type IV fimbrial assembly protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_01254</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the GSP F family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO19985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19985">
        <property type="protein sequence ID" value="KKO19985"/>
        <property type="gene ID" value="BROFUL_01254"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.81.30">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003004">
        <property type="entry name" value="GspF/PilC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001992">
        <property type="entry name" value="T2SS_GspF/T4SS_PilC_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018076">
        <property type="entry name" value="T2SS_GspF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042094">
        <property type="entry name" value="T2SS_GspF_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30012">
        <property type="entry name" value="PTHR30012"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00482">
        <property type="entry name" value="T2SSF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00812">
        <property type="entry name" value="BCTERIALGSPF"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00874">
        <property type="entry name" value="T2SP_F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="176"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="222"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="388"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="domain" description="T2SSF" evidence="10">
        <location>
            <begin position="80"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="domain" description="T2SSF" evidence="10">
        <location>
            <begin position="283"/>
            <end position="405"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003923"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00482"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO19985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="416" mass="45691" checksum="14A5F9ED4AB4B8A7" modified="2015-11-11" version="1">MSAFQYRAVDNKGQAIKNRIDAATPDEALTKIRGLGYFPTHIKEISTRQKPDEISNTSRKKRGEISLSFGRVNSKDLTVFTRQLSTLQDAGLPIIRGLKILASQMKKGLLKNTTRKVIEDIEGGSTLSGALAKYPKVFDKLYVNIVKAGETSGSLDIILQRLADFREKIERLVRKIIGAMVYPTVVTVVAAGILIGLMVFIIPNFAKIFEEMDLELPAPTKMLIAFSAILKNQWIFIPAVPFGTLIIYKIAGKIKKIRLLIDRVKFKLPVFGKTLNKSTVSRFTRTLATLTASGVPILDALNNVKEATGNAAMAQAIQNIHDSIRGGESITKPLRASKICSEMVVNMVEVGEETGELDKMLSKVADNYDDEVDRAVEAMVSLIEPMMIVFLGGSVGFIVIAMFVPLIKLMQGMGAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWQ8</accession>
    <name>A0A0M2UWQ8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 12">Pyruvate kinase</fullName>
            <ecNumber evidence="4 12">2.7.1.40</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">BROFUL_01868</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>ATP + pyruvate = ADP + H(+) + phosphoenolpyruvate</text>
            <dbReference type="Rhea" id="RHEA:18157"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.40"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2 12">Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 5/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 12">Belongs to the pyruvate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.40" evidence="4 12"/>
    <dbReference type="EMBL" id="LAQJ01000194">
        <property type="protein sequence ID" value="KKO19406.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19406">
        <property type="protein sequence ID" value="KKO19406"/>
        <property type="gene ID" value="BROFUL_01868"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2332"/>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00188"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030955">
        <property type="term" value="F:potassium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004743">
        <property type="term" value="F:pyruvate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.33.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1380.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001697">
        <property type="entry name" value="Pyr_Knase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011037">
        <property type="entry name" value="Pyrv_Knase-like_insert_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018209">
        <property type="entry name" value="Pyrv_Knase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015793">
        <property type="entry name" value="Pyrv_Knase_brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015795">
        <property type="entry name" value="Pyrv_Knase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036918">
        <property type="entry name" value="Pyrv_Knase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015806">
        <property type="entry name" value="Pyrv_Knase_insert_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11817">
        <property type="entry name" value="PTHR11817"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00224">
        <property type="entry name" value="PK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02887">
        <property type="entry name" value="PK_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01050">
        <property type="entry name" value="PYRUVTKNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50800">
        <property type="entry name" value="SSF50800"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52935">
        <property type="entry name" value="SSF52935"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01064">
        <property type="entry name" value="pyruv_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00110">
        <property type="entry name" value="PYRUVATE_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10 12" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="7 12 15" id="KW-0418">Kinase</keyword>
    <keyword evidence="9 12" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11 15" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PK" evidence="13">
        <location>
            <begin position="5"/>
            <end position="341"/>
        </location>
    </feature>
    <feature type="domain" description="PK_C" evidence="14">
        <location>
            <begin position="359"/>
            <end position="471"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004997"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008663"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012142"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023317"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU000504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF00224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF02887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KKO19406.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="472" mass="51935" checksum="5AE38EC1718EB45B" modified="2015-11-11" version="1">MDTFSKTKIVCTIGPACNSPAVMEEMVTAGMSVARLNFSHGTLSDHELNISNIRLTSSRLKKPVAIIQDLSGPKIRIGTLSQESILLKAGNEFTLTNEVIEGEETRVSVTYPLLPSYVFVGDTVLLCDGEIELKVVRKDTTDIVCQVIVGGVLTARKGINIPTRSLPIPSLTEKDKRDLDFGIEHDVDYVALSFVKNADDVLQLKELLREKNKDIPVIAKIEKHEALDHLEDIIKAADAIMVARGDLGVEIPLEQIPLVQKRIIQIANRYCKPVITATQMLESMVNNYRPTRAEITDVANAIFDGSDAVMLSEETAKGRYPVEAVRMLSKIARETEPSVARKTDFETLRFANNPITVPDAISIATCQVAGNLHINVIITPTQTGSTARFISRHRSQHLILAATPSLKTYRRLALVWGVIPMITEPLKNTDDMMKKSIEAAREAGYISEGEKVVITGGVPVWEPGSTNLMRVC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWR4</accession>
    <name>A0A0M2UWR4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Glucose-1-phosphate adenylyltransferase</fullName>
            <ecNumber evidence="9">2.7.7.27</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">ADP-glucose pyrophosphorylase</fullName>
            <shortName evidence="9">ADPGlc PPase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">ADP-glucose synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">glgC</name>
        <name evidence="11" type="ORF">BROFUL_01287</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>alpha-D-glucose 1-phosphate + ATP + H(+) = ADP-alpha-D-glucose + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:12120"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57498"/>
            <dbReference type="ChEBI" id="CHEBI:58601"/>
            <dbReference type="EC" id="2.7.7.27"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="9">Glycan biosynthesis; glycogen biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 9">Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.27" evidence="9"/>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20015">
        <property type="protein sequence ID" value="KKO20015"/>
        <property type="gene ID" value="BROFUL_01287"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1588"/>
    <dbReference type="UniPathway" id="UPA00164"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008878">
        <property type="term" value="F:glucose-1-phosphate adenylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005978">
        <property type="term" value="P:glycogen biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00624">
        <property type="entry name" value="GlgC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011831">
        <property type="entry name" value="ADP-Glc_PPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005836">
        <property type="entry name" value="ADP_Glu_pyroP_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023049">
        <property type="entry name" value="GlgC_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005835">
        <property type="entry name" value="NTP_transferase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43523">
        <property type="entry name" value="PTHR43523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00483">
        <property type="entry name" value="NTP_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02091">
        <property type="entry name" value="glgC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00809">
        <property type="entry name" value="ADP_GLC_PYROPHOSPH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8 9" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="7 9" id="KW-0320">Glycogen biosynthesis</keyword>
    <keyword evidence="2 9" id="KW-0321">Glycogen metabolism</keyword>
    <keyword evidence="5 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 9 11" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 9 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NTP_transferase" evidence="10">
        <location>
            <begin position="16"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="region of interest" description="Alpha-D-glucose 1-phosphate binding" evidence="9">
        <location>
            <begin position="186"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="106"/>
        </location>
        <ligand>
            <name>alpha-D-glucose 1-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58601"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="171"/>
        </location>
        <ligand>
            <name>alpha-D-glucose 1-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58601"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="204"/>
        </location>
        <ligand>
            <name>alpha-D-glucose 1-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58601"/>
        </ligand>
    </feature>
    <feature type="site" description="Could play a key role in the communication between the regulatory and the substrate sites" evidence="9">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <feature type="site" description="Could play a key role in the communication between the regulatory and the substrate sites" evidence="9">
        <location>
            <position position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010443"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022600"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO20015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="414" mass="46970" checksum="2049C187DF23A574" modified="2015-11-11" version="1">MSSLFIYDKAEKVLVMLLAGGQGERLYPLTKDRAKPAVPFGGIYRIIDFPLSNCLNSGLKKISVLTQYKSYSLDRHLRIGWNIGNYELGEFIESIPPQKRTSDLWYQGTADAVYQNIYVLERERPEKVLILAGDHIYKMDYRELIAFHESKQAEVTIPCLEVPLHEANRFGIVSINNDLQITDFVEKPPHPRPIPSNPNVALVSMGIYLFNTEVLVKQVIGDAKQDTSHDFGKNIIPSMISNSRLFAYIFNDKNNKAVKYWRDIGTLDAYWDANMDLVQVEPIFNLYDTSWPIRTYYERYPPAKTVFSELFPGGRCGMVLNSLVSNGCIISGARVEKSVISPNVRIEDHSEVYDSIIMDGVRIGKNVKIRNTIIDKSVIVPDGKQIGYNPEEDARQFTVTEKGIVVVPKELPLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWY7</accession>
    <name>A0A0M2UWY7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AMMECR1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00697</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20578.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20578">
        <property type="protein sequence ID" value="KKO20578"/>
        <property type="gene ID" value="BROFUL_00697"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.700.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023473">
        <property type="entry name" value="AMMECR1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036071">
        <property type="entry name" value="AMMECR1_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002733">
        <property type="entry name" value="AMMECR1_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027485">
        <property type="entry name" value="AMMECR1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027623">
        <property type="entry name" value="AmmeMemoSam_A"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13016">
        <property type="entry name" value="PTHR13016"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01871">
        <property type="entry name" value="AMMECR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143447">
        <property type="entry name" value="SSF143447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04335">
        <property type="entry name" value="AmmeMemoSam_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00296">
        <property type="entry name" value="TIGR00296"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51112">
        <property type="entry name" value="AMMECR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMMECR1" evidence="1">
        <location>
            <begin position="4"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20578.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="183" mass="20600" checksum="A79B860D9F0DDE52" modified="2015-11-11" version="1">MEEQAKRILFDIARKSIRAAIKQEPNPPVSCSRPDLQEKLGVFVTLRTRGQLRGCIGRFQSDMPLYQSVSELSAASATDDPRFEFHRITPSELDQLDIEISVLSPLKQMDNPLDFELGKHGIYIKKGFSAGCFLPQVATETGWSKEEFLSACCSHKAGLSADAWKHKDIEMYSFTTEAIEEKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX20</accession>
    <name>A0A0M2UX20_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01758</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000182">
        <property type="protein sequence ID" value="KKO19531.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19531">
        <property type="protein sequence ID" value="KKO19531"/>
        <property type="gene ID" value="BROFUL_01758"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2179"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042953">
        <property type="term" value="P:lipoprotein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03255">
        <property type="entry name" value="ABC_MJ0796_LolCDE_FtsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015854">
        <property type="entry name" value="ABC_transpr_LolD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017911">
        <property type="entry name" value="MacB_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24220:SF654">
        <property type="entry name" value="PTHR24220:SF654"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="15"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="51"/>
            <end position="58"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19531.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="240" mass="26298" checksum="7BDCA3C0F9A959C2" modified="2015-11-11" version="1">MIMVSENIVNNGTLLQAKDLVKEYTNGERAVPVLRGINLAVKKGEIVVIVGASGAGKSTLLHILGILDTPTSGSVLYKGINLTELNAKRQAYMRNCIFGFVFQFYHLLPDFTALENVLLPCFIGSRFLKGGAAAKGKTDRAISLLKQVGLGDRITHKPSQLSGGERQRVAIIRALINNPELLLCDEPTGNLDTRTGHEIRELIWDVNKKMNQTVVIVTHDEEMAKHAGRVVRIVDGSIME</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX45</accession>
    <name>A0A0M2UX45_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Putative sugar transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_01145</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial sugar transferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000124">
        <property type="protein sequence ID" value="KKO20120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20120">
        <property type="protein sequence ID" value="KKO20120"/>
        <property type="gene ID" value="BROFUL_01145"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1416"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003362">
        <property type="entry name" value="Bact_transf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017475">
        <property type="entry name" value="EPS_sugar_tfrase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02397">
        <property type="entry name" value="Bac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03025">
        <property type="entry name" value="EPS_sugtrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 9" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="143"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="domain" description="Bac_transf" evidence="8">
        <location>
            <begin position="138"/>
            <end position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02397"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="326" mass="37860" checksum="3C8BFE871951B86A" modified="2015-11-11" version="1">MFTKQKVLLLGNDSLINEIESLLRDRKYLKTYDLSVMKNYSEKSGTVCIDGSESLKSLLSIIRENKFGTVVVSHRLENFPVLRKQLLEIKFANVTIYDSLYFYEALTEKAPIHYAKDEWFLFRNQGEKFNPPLYKIAKRCMDIFLSLVGIIASLPFVLLIALVIKVSSKGPVFFKQERLGLHERPFTLLKFRTMINDAEKVTGPTWADKNDPRITKIGKLLRKIRFDELPQLFNVLKGEMSFIGTRPIRKYFAEKLAKDIPHYRLRFLIKPGLTGWAQVQGGYFGTEEGQVEKLEYDLYYIQNQSIFFDILIVLKTISTVLFQRGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX58</accession>
    <name>A0A0M2UX58_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01137</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000123">
        <property type="protein sequence ID" value="KKO20135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20135">
        <property type="protein sequence ID" value="KKO20135"/>
        <property type="gene ID" value="BROFUL_01137"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="6"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="44"/>
            <end position="51"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="281" mass="31775" checksum="EAFF49C76D52B831" modified="2015-11-11" version="1">MDSYAIRTEGLTKVYKDFWRRKNTSALTNLNLTVERGEVFGLLGPNGSGKTTTVKLLLGLLFPTRGKSWVLGSPSGDLAVKRKIGFLPEESYLYKFLTAEEILDFYAKLFDIEKNERKRRIDALIREVRLDHVRKRPLRQYSKGMLRRIGLAQALINDPELVILDEPTSGLDPIGSREMKDMILGFKRQGKTVVLCSHLLADVQDVCDRIAIFNKGVLQVTGTVKELLSQNDAIEFVVRNLSREDIQAVKAFVESRKGSVVSIDHPSSTLEDLFISIIQHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX67</accession>
    <name>A0A0M2UX67_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative tRNA (Adenine(37)-N6)-methyltransferase</fullName>
            <ecNumber evidence="4">2.1.1.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">tsaA</name>
        <name evidence="4" type="ORF">BROFUL_00823</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the tRNA methyltransferase O family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.-" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000103">
        <property type="protein sequence ID" value="KKO20467.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20467">
        <property type="protein sequence ID" value="KKO20467"/>
        <property type="gene ID" value="BROFUL_00823"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1040"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09281">
        <property type="entry name" value="UPF0066"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023370">
        <property type="entry name" value="TrmO-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040372">
        <property type="entry name" value="YaeB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036413">
        <property type="entry name" value="YaeB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036414">
        <property type="entry name" value="YaeB_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12818">
        <property type="entry name" value="PTHR12818"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01980">
        <property type="entry name" value="TrmO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF118196">
        <property type="entry name" value="SSF118196"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00104">
        <property type="entry name" value="tRNA_TsaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51668">
        <property type="entry name" value="TSAA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TsaA-like" evidence="3">
        <location>
            <begin position="1"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00033753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51668"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20467.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="120" mass="13736" checksum="E8FF022029E95C13" modified="2015-11-11" version="1">MITKIVVDADYSDGLRGIDDYSHLIILYWLDKVDRVRLTMRPQGKKDVPEVGIFACRCPWRPNPIGMTTVKALERKGNILTVKGLDVLDGTPLLDIKPYTPPYDAVEEMRCPDWVNNLEY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXC8</accession>
    <name>A0A0M2UXC8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02162</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000214">
        <property type="protein sequence ID" value="KKO19119.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19119">
        <property type="protein sequence ID" value="KKO19119"/>
        <property type="gene ID" value="BROFUL_02162"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19119.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="57" mass="5960" checksum="83BC2D95984582DD" modified="2015-11-11" version="1">MRKIYISLAVFGVITVGAGIANISTLVKSAFAGHCQCPEGCPCSHCSGKARECNCKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXK7</accession>
    <name>A0A0M2UXK7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01628</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19696.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19696">
        <property type="protein sequence ID" value="KKO19696"/>
        <property type="gene ID" value="BROFUL_01628"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13180">
        <property type="entry name" value="PDZ_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00228">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="SSF50156"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PDZ" evidence="1">
        <location>
            <begin position="63"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00228"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19696.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="160" mass="18142" checksum="C99373E323AF8102" modified="2015-11-11" version="1">MGDYITKIDSKEILDILDFEKYILRKNAGDKLSIHINRDGSEFKVDVKLEKAPLPSIEKLALEKLGLYVQDLTPQLAKQLKLWWLKSGVLISGVQKNSPAAEVGIKEGHVLVYVGQYRINDVEELSALLKIMQKGDVWEVGIVWSDKLGEHQGYARIKIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXL8</accession>
    <name>A0A0M2UXL8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00952</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000116">
        <property type="protein sequence ID" value="KKO20320.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20320">
        <property type="protein sequence ID" value="KKO20320"/>
        <property type="gene ID" value="BROFUL_00952"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20320.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="108" mass="11882" checksum="7597D1DC5ACAB5EA" modified="2015-11-11" version="1">MPEFLPDLNRFPASHLSFRAGTVNAARSCIFEELRRDMLCLTEHFGCQFPYLPLCTVTAAYLKEVQKFAGVHGDDYFGLGGIGQQKAGVLEGAFSLIPECSVSSSYHC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXP6</accession>
    <name>A0A0M2UXP6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Deoxyribonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00653</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000087">
        <property type="protein sequence ID" value="KKO20617.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20617">
        <property type="protein sequence ID" value="KKO20617"/>
        <property type="gene ID" value="BROFUL_00653"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.825"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006304">
        <property type="term" value="P:DNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013670">
        <property type="entry name" value="EcoEI_R_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006935">
        <property type="entry name" value="Helicase/UvrB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08463">
        <property type="entry name" value="EcoEI_R_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04851">
        <property type="entry name" value="ResIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="1">
        <location>
            <begin position="71"/>
            <end position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20617.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="828" mass="95601" checksum="E73882589E48D2C6" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXR4</accession>
    <name>A0A0M2UXR4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Site-specific DNA-methyltransferase (cytosine-N(4)-specific)</fullName>
            <ecNumber evidence="3">2.1.1.113</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_00390</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 2'-deoxycytidine in DNA + S-adenosyl-L-methionine = an N(4)-methyl-2'-deoxycytidine in DNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:16857"/>
            <dbReference type="Rhea" id="RHEA-COMP:11369"/>
            <dbReference type="Rhea" id="RHEA-COMP:13674"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:85452"/>
            <dbReference type="ChEBI" id="CHEBI:137933"/>
            <dbReference type="EC" id="2.1.1.113"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the N(4)/N(6)-methyltransferase family. N(4) subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.113" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000051">
        <property type="protein sequence ID" value="KKO20883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20883">
        <property type="protein sequence ID" value="KKO20883"/>
        <property type="gene ID" value="BROFUL_00390"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.485"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008170">
        <property type="term" value="F:N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015667">
        <property type="term" value="F:site-specific DNA-methyltransferase (cytosine-N4-specific) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002941">
        <property type="entry name" value="DNA_methylase_N4/N6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017985">
        <property type="entry name" value="MeTrfase_CN4_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01555">
        <property type="entry name" value="N6_N4_Mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00093">
        <property type="entry name" value="N4_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="5 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N6_N4_Mtase" evidence="7">
        <location>
            <begin position="61"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="475" mass="54392" checksum="A943AC3F5B741C8A" modified="2015-11-11" version="1">MLTLSENVKVLPQKIALSAVEHLDQKLYYHFKDKFHLDVSLSRSLVSFQANKTREIYRWYKFKEAFSASLVEHLLEKYKIVSGLILDPFAGSGTALFAAIAEGINAGGIELLPIGQQIINTKKILALEFTKNDFAILRRWSLEQPWRKSELRMPLNELRITKDAYPEQTKESIERYLGTCEQENERIRAVLRFALLCILESVSYTRKDGQYLRWDYRSGRRQGKKPFNKGTIPSFENAICNKIDEIVFDLHTRGKQKPLFTSKHSKGTINLYGGSCLDVLPTIPTGTYDAIITSPPYCNRYDYTRTYALELALQGISEQELLHLRQQMLSCTVENRAKDLLKMNPPWRKAIAAADHQELLQSILKYLDDQKAQGMLNNNGIPRMVRGYFYEMACVIAECSRVMKPNAPLFMVNDNVRFAGASISADMILSHIAEKLGFYVENILVLPKGKGNSSQQMGKHGRELLRKCVYVWRKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXT3</accession>
    <name>A0A0M2UXT3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01502</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000155">
        <property type="protein sequence ID" value="KKO19776.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19776">
        <property type="protein sequence ID" value="KKO19776"/>
        <property type="gene ID" value="BROFUL_01502"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19776.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="373" mass="42512" checksum="37AA2329CF414351" modified="2015-11-11" version="1">MKRIDAPSQCSPKKDTYSLNKQIQQIQVYLTKAGKMLSFKDKPRVFAAVHHVNWERPGLVDGWAEITDTVHYDWGNAFDQYASDWHRNGKPAFNKELIRRVESSHREKPIDIFFSYLSGRWVYPETIQTINNLNIITVNISLDDTLKFWGVQETSGYSGTAEIAPEFDFCITCQSKEDVGKYYMVGARALFLPPGANPRIFSPLPVPRDIPVSFIGQCYGIRPHIIAWLKEHGIIVNTYGRGWLSAEISSQDMNAIYSRSLINLGFGFIGNSSVTGLKGRDFEVPLMGGLYLTTYNQALEDHFTIGEEIACYRNEVELRTQLSYYITHPDIALKIGASGRVRCLRDHTWINRFKTILNVIGISDYNHETSHGW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXY5</accession>
    <name>A0A0M2UXY5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphomethylpyrimidine kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00855</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000105">
        <property type="protein sequence ID" value="KKO20430.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20430">
        <property type="protein sequence ID" value="KKO20430"/>
        <property type="gene ID" value="BROFUL_00855"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1080"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008972">
        <property type="term" value="F:phosphomethylpyrimidine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01169">
        <property type="entry name" value="HMPP_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045029">
        <property type="entry name" value="HMP/HMP-P_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004399">
        <property type="entry name" value="HMP/HMP-P_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013749">
        <property type="entry name" value="PM/HMP-P_kinase-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20858">
        <property type="entry name" value="PTHR20858"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08543">
        <property type="entry name" value="Phos_pyr_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00097">
        <property type="entry name" value="HMP-P_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Phos_pyr_kin" evidence="1">
        <location>
            <begin position="18"/>
            <end position="268"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08543"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20430.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="277" mass="29560" checksum="09C93A19E5A8886F" modified="2015-11-11" version="1">MKTQAPSFSKVLSIAGSDTSGGAGIQADIKTITALGCYATTVVTALTAQNSLGVHSIFEVPASFVGEQIDAVMTDIGTDAVKTGMLMNKDVVEVVCSKVREYKIERLVVDPVILSKNGRRLLTADAVRVVTVQLFPLALLVTPNIPEAADITGLPIKSISDAEEAARSIYQLGPAYVLIKGGHAKRSWDRQGKDKVIDIVYDGKGFEYIEGDYIRTDNTHGTGCTYASAIAAFLAKGNGLVDAVVQAKEFVTTAIQKSFELGRGYGTLDQYHTVQLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY09</accession>
    <name>A0A0M2UY09_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01938</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000198">
        <property type="protein sequence ID" value="KKO19354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19354">
        <property type="protein sequence ID" value="KKO19354"/>
        <property type="gene ID" value="BROFUL_01938"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="49" mass="5691" checksum="1CD594D6B138F684" modified="2015-11-11" version="1" fragment="single">MLYLHIRQHGLRGILIITYILILQSKGTHIVTIQRNIAPYRYELAKSGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY10</accession>
    <name>A0A0M2UY10_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative 3-oxoacyl-(Acyl-carrier-protein) synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00291</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000034">
        <property type="protein sequence ID" value="KKO20978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20978">
        <property type="protein sequence ID" value="KKO20978"/>
        <property type="gene ID" value="BROFUL_00291"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.353"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00834">
        <property type="entry name" value="KAS_I_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000794">
        <property type="entry name" value="Beta-ketoacyl_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014031">
        <property type="entry name" value="Ketoacyl_synth_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014030">
        <property type="entry name" value="Ketoacyl_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020841">
        <property type="entry name" value="PKS_Beta-ketoAc_synthase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11712">
        <property type="entry name" value="PTHR11712"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00109">
        <property type="entry name" value="ketoacyl-synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02801">
        <property type="entry name" value="Ketoacyl-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00825">
        <property type="entry name" value="PKS_KS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PKS_KS" evidence="3">
        <location>
            <begin position="3"/>
            <end position="373"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="373" mass="40971" checksum="54C5C525F9D97D1D" modified="2015-11-11" version="1">MNGANEMKSFDTAKYKVHRSCEVKNFQWDFELENQIKENTIHKYVYYAAREALQESGLSGDKKFDRERFGIAIGTLAAELTPFERLLRLDTSKKDTGFDNIVAAVYPPNSITNILSKNFEFEGPTMISLNACSSGNHAIAWAYDHLVDNKVDVVMVGGGDMIPQTEFTHFHNLKALAPERCQPFDKNRQGLMIGEGAGILIMERYEFAKKRGATIIAEMAGYGLSCDGFHMTAPHPEGDGAVRCMSDALKMVNLSPQEIGYINAHGTGTPHNDKTETIAIKRVFGDGAYKVPSSSTKSMIGHLMGAASAVESVVCCLVLRHGVVPPTINYETPDPECDLDYVPNTARELKVGHVLNNSFAFGGNNATTIFSKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY19</accession>
    <name>A0A0M2UY19_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">CoA enzyme activase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01891</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19364">
        <property type="protein sequence ID" value="KKO19364"/>
        <property type="gene ID" value="BROFUL_01891"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2360"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002731">
        <property type="entry name" value="ATPase_BadF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008275">
        <property type="entry name" value="CoA_E_activase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01869">
        <property type="entry name" value="BcrAD_BadFG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00241">
        <property type="entry name" value="CoA_E_activ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BcrAD_BadFG" evidence="3">
        <location>
            <begin position="41"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01869"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="312" mass="34069" checksum="35A6B13DAF647590" modified="2015-11-11" version="1">MVFSTTQVFHTSRHAYLAQRLLPCLACLLQVLLYAMKIVAGIDIGSTTTKVVLLRGLTFLGSKTSSTGTNCKRTVKLLLEELVEDYGLREDEIQYSVATGYGRRIVPANEIITEITANAKAATWLMRDKANVRTIINIGGQDCKVIALDDRGIMTDFAMNDKCAAGTGRFLEVMSRILEVELDELGILSERAENIPHINSLCTVFGESEVISLLSQGKKVEDIIAGIHQSIAKRVGAMVKKIGVKEAVFFDGGPAFNTGLKSALERELETGISIPPDPQITTALGAALVAYEHSIRNPARCHLKEKETRCTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY55</accession>
    <name>A0A0M2UY55_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Chaperonin GroEL</fullName>
            <ecNumber evidence="6">5.6.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">60 kDa chaperonin</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Chaperonin-60</fullName>
            <shortName evidence="6">Cpn60</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">groEL</name>
        <name evidence="6" type="synonym">groL</name>
        <name evidence="9" type="ORF">BROFUL_00262</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 8">Together with its co-chaperonin GroES, plays an essential role in assisting protein folding. The GroEL-GroES system forms a nano-cage that allows encapsulation of the non-native substrate proteins and provides a physical environment optimized to promote and accelerate protein folding.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6 8">Forms a cylinder of 14 subunits composed of two heptameric rings stacked back-to-back. Interacts with the co-chaperonin GroES.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the chaperonin (HSP60) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.1.7" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000031">
        <property type="protein sequence ID" value="KKO21013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21013">
        <property type="protein sequence ID" value="KKO21013"/>
        <property type="gene ID" value="BROFUL_00262"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.320"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042026">
        <property type="term" value="P:protein refolding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03344">
        <property type="entry name" value="GroEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.7.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00600">
        <property type="entry name" value="CH60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018370">
        <property type="entry name" value="Chaperonin_Cpn60_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001844">
        <property type="entry name" value="Cpn60/GroEL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002423">
        <property type="entry name" value="Cpn60/GroEL/TCP-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027409">
        <property type="entry name" value="GroEL-like_apical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027413">
        <property type="entry name" value="GROEL-like_equatorial_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027410">
        <property type="entry name" value="TCP-1-like_intermed_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00118">
        <property type="entry name" value="Cpn60_TCP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00298">
        <property type="entry name" value="CHAPERONIN60"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48592">
        <property type="entry name" value="SSF48592"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52029">
        <property type="entry name" value="SSF52029"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02348">
        <property type="entry name" value="GroEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00296">
        <property type="entry name" value="CHAPERONINS_CPN60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6" id="KW-0143">Chaperone</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="30"/>
            <end position="33"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="415"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="494"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006607"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00600"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000419"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO21013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="539" mass="56971" checksum="C1CD51935C91FB20" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY56</accession>
    <name>A0A0M2UY56_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ribonuclease R</fullName>
            <shortName evidence="6">RNase R</shortName>
            <ecNumber evidence="6">3.1.13.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rnr</name>
        <name evidence="8" type="ORF">BROFUL_01387</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates.</text>
            <dbReference type="EC" id="3.1.13.1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the RNR ribonuclease family. RNase R subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.13.1" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000144">
        <property type="protein sequence ID" value="KKO19896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19896">
        <property type="protein sequence ID" value="KKO19896"/>
        <property type="gene ID" value="BROFUL_01387"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1710"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008859">
        <property type="term" value="F:exoribonuclease II activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01895">
        <property type="entry name" value="RNase_R"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011129">
        <property type="entry name" value="CSD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040476">
        <property type="entry name" value="CSD2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013223">
        <property type="entry name" value="RNase_B_OB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001900">
        <property type="entry name" value="RNase_II/R"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022966">
        <property type="entry name" value="RNase_II/R_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004476">
        <property type="entry name" value="RNase_II/RNase_R"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011805">
        <property type="entry name" value="RNase_R"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022967">
        <property type="entry name" value="S1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003029">
        <property type="entry name" value="S1_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17876">
        <property type="entry name" value="CSD2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08206">
        <property type="entry name" value="OB_RNB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00773">
        <property type="entry name" value="RNB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00575">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00357">
        <property type="entry name" value="CSP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00955">
        <property type="entry name" value="RNB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00358">
        <property type="entry name" value="3_prime_RNase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02063">
        <property type="entry name" value="RNase_R"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01175">
        <property type="entry name" value="RIBONUCLEASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50126">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="4 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 6" id="KW-0540">Nuclease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="S1 motif" evidence="7">
        <location>
            <begin position="628"/>
            <end position="709"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="775" mass="89140" checksum="72AE61F6CBD69092" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYH5</accession>
    <name>A0A0M2UYH5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00129</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DedA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000016">
        <property type="protein sequence ID" value="KKO21128.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21128">
        <property type="protein sequence ID" value="KKO21128"/>
        <property type="gene ID" value="BROFUL_00129"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.161"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032818">
        <property type="entry name" value="DedA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30353">
        <property type="entry name" value="PTHR30353"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="28"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="57"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU367016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21128.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="181" mass="20314" checksum="34CE783E94501619" modified="2015-11-11" version="1">MVEWGKYFIGFVLHLDSHLYELVSAYGIWVHLFLFLIVFAETGFVATPFLPGDSLLFAAGAVAATGALNVYTVVVLLVIAAILGDTANYWFGYHIGPKIFRKHKSAFFNPEYLERTYRFFEKYGAKRLSLPGLSLLSAPLHRLLPVSAAWLIYALLRITSSVRFFGCRSLPSWGISWAICP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYK7</accession>
    <name>A0A0M2UYK7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">FGE-sulfatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00364</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000046">
        <property type="protein sequence ID" value="KKO20907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20907">
        <property type="protein sequence ID" value="KKO20907"/>
        <property type="gene ID" value="BROFUL_00364"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016187">
        <property type="entry name" value="CTDL_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005532">
        <property type="entry name" value="SUMF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042095">
        <property type="entry name" value="SUMF_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03781">
        <property type="entry name" value="FGE-sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56436">
        <property type="entry name" value="SSF56436"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FGE-sulfatase" evidence="1">
        <location>
            <begin position="428"/>
            <end position="631"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="635" mass="74006" checksum="9E0DA52178A9D8FB" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYN4</accession>
    <name>A0A0M2UYN4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01166</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000126">
        <property type="protein sequence ID" value="KKO20091.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20091">
        <property type="protein sequence ID" value="KKO20091"/>
        <property type="gene ID" value="BROFUL_01166"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013229">
        <property type="entry name" value="PEGA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08308">
        <property type="entry name" value="PEGA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644097" evidence="2">
        <location>
            <begin position="27"/>
            <end position="655"/>
        </location>
    </feature>
    <feature type="domain" description="PEGA" evidence="3">
        <location>
            <begin position="331"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="293"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="421"/>
            <end position="450"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="421"/>
            <end position="436"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20091.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="655" mass="70972" checksum="F7A63FA886BF501A" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYP0</accession>
    <name>A0A0M2UYP0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Fumarate reductase iron-sulfur subunit</fullName>
            <ecNumber evidence="6">1.3.5.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_01171</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>a menaquinone + succinate = a menaquinol + fumarate</text>
            <dbReference type="Rhea" id="RHEA:27834"/>
            <dbReference type="Rhea" id="RHEA-COMP:9537"/>
            <dbReference type="Rhea" id="RHEA-COMP:9539"/>
            <dbReference type="ChEBI" id="CHEBI:16374"/>
            <dbReference type="ChEBI" id="CHEBI:18151"/>
            <dbReference type="ChEBI" id="CHEBI:29806"/>
            <dbReference type="ChEBI" id="CHEBI:30031"/>
            <dbReference type="EC" id="1.3.5.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
        <text evidence="6">Binds 1 [2Fe-2S] cluster.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>[3Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:21137"/>
        </cofactor>
        <text evidence="6">Binds 1 [3Fe-4S] cluster.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="6">Binds 1 [4Fe-4S] cluster.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.3.5.4" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000126">
        <property type="protein sequence ID" value="KKO20096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20096">
        <property type="protein sequence ID" value="KKO20096"/>
        <property type="gene ID" value="BROFUL_01171"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1450"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051538">
        <property type="term" value="F:3 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102040">
        <property type="term" value="F:fumarate reductase (menaquinone)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1060.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006058">
        <property type="entry name" value="2Fe2S_fd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009051">
        <property type="entry name" value="Helical_ferredxn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004489">
        <property type="entry name" value="Succ_DH/fum_Rdtase_Fe-S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025192">
        <property type="entry name" value="Succ_DH/fum_Rdtase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13085">
        <property type="entry name" value="Fer2_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13183">
        <property type="entry name" value="Fer4_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00384">
        <property type="entry name" value="dhsB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00197">
        <property type="entry name" value="2FE2S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="5 6" id="KW-0003">3Fe-4S</keyword>
    <keyword evidence="6" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="3 6" id="KW-0408">Iron</keyword>
    <keyword evidence="4 6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="7">
        <location>
            <begin position="27"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="8">
        <location>
            <begin position="141"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU361237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="244" mass="28069" checksum="74BAFD700350E764" modified="2015-11-11" version="1">MQTHETVVFQIFRFHPEQDAKPYFQEYEIPFLRKDLTVLEGLYYIQQRLDDSLAFRSSCRAAICGSCAMHINGKYRLACNTPVLKLKSGKITIRPLAHMPLVKDLVVDMKSFWEKYEQMKPYLMPGKPFPASGERLQRPEERAKVDALIDCILCACCHSSCPVTALHEKYLGPMAFLTADRFVSDTRDGAHEERLAMVDDEHGVWRCHTVFNCQEVCPKDLDPSGSIAHLKMEILKHKIQQKCF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYW8</accession>
    <name>A0A0M2UYW8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Histidine--tRNA ligase</fullName>
            <ecNumber evidence="8">6.1.1.21</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Histidyl-tRNA synthetase</fullName>
            <shortName evidence="8">HisRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">hisS</name>
        <name evidence="10" type="ORF">BROFUL_00449</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>ATP + L-histidine + tRNA(His) = AMP + diphosphate + H(+) + L-histidyl-tRNA(His)</text>
            <dbReference type="Rhea" id="RHEA:17313"/>
            <dbReference type="Rhea" id="RHEA-COMP:9665"/>
            <dbReference type="Rhea" id="RHEA-COMP:9689"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57595"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78527"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.21"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="3 8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.21" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000059">
        <property type="protein sequence ID" value="KKO20820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20820">
        <property type="protein sequence ID" value="KKO20820"/>
        <property type="gene ID" value="BROFUL_00449"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.562"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004821">
        <property type="term" value="F:histidine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006427">
        <property type="term" value="P:histidyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00773">
        <property type="entry name" value="HisRS-like_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00859">
        <property type="entry name" value="HisRS_anticodon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.800">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00127">
        <property type="entry name" value="His_tRNA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004154">
        <property type="entry name" value="Anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036621">
        <property type="entry name" value="Anticodon-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015807">
        <property type="entry name" value="His-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041715">
        <property type="entry name" value="HisRS-like_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004516">
        <property type="entry name" value="HisRS/HisZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033656">
        <property type="entry name" value="HisRS_anticodon"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43707">
        <property type="entry name" value="PTHR43707"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03129">
        <property type="entry name" value="HGTP_anticodon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13393">
        <property type="entry name" value="tRNA-synt_His"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001549">
        <property type="entry name" value="His-tRNA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00442">
        <property type="entry name" value="hisS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="6 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 8" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AA_TRNA_LIGASE_II" evidence="9">
        <location>
            <begin position="1"/>
            <end position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO20820.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="440" mass="49885" checksum="7197E6DE69093795" modified="2015-11-11" version="1">MDVNTEKKVEYTFKAPRGTVDILPTKWTLWRNLEEAGRQEFELSGYYEIRTPVFEDTRLFIRSIGEATDIVEKEMYTFSDSEDSSITLRPENTAPVMRAYLEYELYKTKKFQKFYYIGPQFRKERPQAGRLRQFHQMGIEAVGATDPLLDVETISVATRIFDRIGLKGYKIKINSIGCEQCRPVFRTILKEKLCDHKNGLCELCQSRLNRNVFRILDCKNEGCKSISHHMPSINDYLCESCQSHAKAVREALLEIGIPYIADAHLVRGLDYYTKTVYEITHSSLGARDAICAGGRYDNLISDIGGPSIGSVGFAIGMEATILALENVMAKHKTFSQEVCGPSPSIYIISISEETKKHGFCLLNLLRKANLSADFDYEGRSLKAQMRTANKLGVKYVVVVGPDELARGDVKIKVMETGEEVVLKQNEVPRWFLNKDASMKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYX2</accession>
    <name>A0A0M2UYX2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptide deformylase</fullName>
            <shortName evidence="2">PDF</shortName>
            <ecNumber evidence="2">3.5.1.88</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Polypeptide deformylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">def</name>
        <name evidence="3" type="ORF">BROFUL_01130</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>H2O + N-terminal N-formyl-L-methionyl-[peptide] = formate + N-terminal L-methionyl-[peptide]</text>
            <dbReference type="Rhea" id="RHEA:24420"/>
            <dbReference type="Rhea" id="RHEA-COMP:10639"/>
            <dbReference type="Rhea" id="RHEA-COMP:10640"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:49298"/>
            <dbReference type="ChEBI" id="CHEBI:64731"/>
            <dbReference type="EC" id="3.5.1.88"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
        <text evidence="2">Binds 1 Fe(2+) ion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the polypeptide deformylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.88" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20171.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20171">
        <property type="protein sequence ID" value="KKO20171"/>
        <property type="gene ID" value="BROFUL_01130"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1400"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042586">
        <property type="term" value="F:peptide deformylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00487">
        <property type="entry name" value="Pep_deformylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.45.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00163">
        <property type="entry name" value="Pep_deformylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023635">
        <property type="entry name" value="Peptide_deformylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036821">
        <property type="entry name" value="Peptide_deformylase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10458">
        <property type="entry name" value="PTHR10458"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01327">
        <property type="entry name" value="Pep_deformylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004749">
        <property type="entry name" value="Pep_def"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01576">
        <property type="entry name" value="PDEFORMYLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56420">
        <property type="entry name" value="SSF56420"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00079">
        <property type="entry name" value="pept_deformyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" evidence="2">
        <location>
            <position position="131"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="88"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="130"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20171.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="170" mass="19290" checksum="412C2C37D73A5575" modified="2015-11-11" version="1">MNIVFYPDPVLRSKAKPLTEINREVCRKAEEMMELMHQAQGVGLAAPQVGWSVRLFIIDVEGTRCDEKVFINPVIIEDDGELNKEEGCLSFPGITSRIIRAQRIRAEAYTLKGQKVEIEAEGLAARAWQHELDHLNGDLFIDKMSPSNRLAISHQLKEFERLYKGARVSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ22</accession>
    <name>A0A0M2UZ22_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00396</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000052">
        <property type="protein sequence ID" value="KKO20880.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20880">
        <property type="protein sequence ID" value="KKO20880"/>
        <property type="gene ID" value="BROFUL_00396"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20880.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="85" mass="9074" checksum="9AB88959C2341B5D" modified="2015-11-11" version="1" fragment="single">PVFVIFEVSGKAVGDDNAVKEFSQNGAYDLRTARGADGKQGEGVCDKYPEPGKGLIMRVSCFINIDNGLVGQFVLKFGTGSLKDM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ29</accession>
    <name>A0A0M2UZ29_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00377</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000048">
        <property type="protein sequence ID" value="KKO20890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20890">
        <property type="protein sequence ID" value="KKO20890"/>
        <property type="gene ID" value="BROFUL_00377"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="126" mass="14324" checksum="F67327E061CC3A3B" modified="2015-11-11" version="1" fragment="single">CSKYLATIGGWRRFASFLPANWLRLCCAMNIQNLLVFDKLTKLPMSALPRLKKEVFLFLANLVGQLSLRAEALCQYTVQSSADLSEVVGLSPIADDPSVYKRIIFTRSTVCNSFIRERLRHRVKIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ34</accession>
    <name>A0A0M2UZ34_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01563</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000163">
        <property type="protein sequence ID" value="KKO19729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19729">
        <property type="protein sequence ID" value="KKO19729"/>
        <property type="gene ID" value="BROFUL_01563"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="40" mass="4154" checksum="131415FD3F16EC93" modified="2015-11-11" version="1" fragment="single">PADLRILAISDVLVLPSVNLKPLGIRLLGHLEAVPALQGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ35</accession>
    <name>A0A0M2UZ35_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Histidine kinase</fullName>
            <ecNumber evidence="4">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">BROFUL_00185</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000019">
        <property type="protein sequence ID" value="KKO21087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21087">
        <property type="protein sequence ID" value="KKO21087"/>
        <property type="gene ID" value="BROFUL_00185"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.225"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033479">
        <property type="entry name" value="dCache_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001610">
        <property type="entry name" value="PAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013656">
        <property type="entry name" value="PAS_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029151">
        <property type="entry name" value="Sensor-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02743">
        <property type="entry name" value="dCache_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13185">
        <property type="entry name" value="GAF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08448">
        <property type="entry name" value="PAS_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13426">
        <property type="entry name" value="PAS_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00065">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00086">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103190">
        <property type="entry name" value="SSF103190"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9 17" id="KW-0418">Kinase</keyword>
    <keyword evidence="11 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <keyword evidence="8 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10 12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="313"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="16">
        <location>
            <begin position="335"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="14">
        <location>
            <begin position="411"/>
            <end position="467"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="15">
        <location>
            <begin position="485"/>
            <end position="539"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="14">
        <location>
            <begin position="703"/>
            <end position="773"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="15">
        <location>
            <begin position="775"/>
            <end position="828"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="13">
        <location>
            <begin position="841"/>
            <end position="1053"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="KKO21087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1065" mass="119781" checksum="3848425AFF5C249E" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ49</accession>
    <name>A0A0M2UZ49_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00363</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000045">
        <property type="protein sequence ID" value="KKO20910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20910">
        <property type="protein sequence ID" value="KKO20910"/>
        <property type="gene ID" value="BROFUL_00363"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="47" mass="5706" checksum="B93FD11088E896CE" modified="2015-11-11" version="1" fragment="single">FTTFYLAMKLIINLINATIYKIKFICQRKKMLLTLYRSFDNFALLRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ59</accession>
    <name>A0A0M2UZ59_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00358</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000044">
        <property type="protein sequence ID" value="KKO20925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20925">
        <property type="protein sequence ID" value="KKO20925"/>
        <property type="gene ID" value="BROFUL_00358"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="87" mass="10052" checksum="99BB0717773FB91F" modified="2015-11-11" version="1">MLKKVWEPPKKLEDVPDTMDRVSALIQFVQDLTAQPTPPVDEYNFSSHGYYGFYLFLGFVQDTVEECQKIICNSVKAEREGNNHVKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZG1</accession>
    <name>A0A0M2UZG1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Efflux transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00061</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000007">
        <property type="protein sequence ID" value="KKO21222.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21222">
        <property type="protein sequence ID" value="KKO21222"/>
        <property type="gene ID" value="BROFUL_00061"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032317">
        <property type="entry name" value="HlyD_D23"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006143">
        <property type="entry name" value="RND_pump_MFP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16576">
        <property type="entry name" value="HlyD_D23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01730">
        <property type="entry name" value="RND_mfp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644120" evidence="3">
        <location>
            <begin position="31"/>
            <end position="443"/>
        </location>
    </feature>
    <feature type="domain" description="HlyD_D23" evidence="4">
        <location>
            <begin position="117"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="205"/>
            <end position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF16576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO21222.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="443" mass="49604" checksum="0D0686E7B43D50CD" modified="2015-11-11" version="1">MIYLRLSKTTMIRFMIILLCTGILPVADVAAHQGCLDAQKDEMCQEHGVPEAACSLCVPAMKNNSYEELLKKQCEHNVPILECDGCRYEVGAVKVDTSILGEIITIENVELFDMEITHKATGAVGPNRDRFVIVSPRVSGVVKELFVDWGDHVKKGQRLAVLDSIELGEVRANYKKAMAMLRMAKKNYSREKTLYKQKISSTKHFLEAENTYEQARIELKALKEKLMLMGQQEDDIQDIKEDQVSSLFTLSAPFDGTVVEKSVAIGELKDAFSPIVTISDLTNLWVWFDIYEKDISVVNPGNKVVISVASYPEEQFEGLVTYIGVTVDEKTRTVKVRAEVDNRHKKLKPGMFAKVSLLHHSEKTNNSPIVPEEAVQSDGQNRFVFVPLHEGFFLRRDVILGTKVDGHIKVVSGLNKNDRVVVKGGFLLKSGIMKEKFGEGCAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZH2</accession>
    <name>A0A0M2UZH2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Orotidine 5'-phosphate decarboxylase</fullName>
            <ecNumber evidence="7">4.1.1.23</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">OMP decarboxylase</fullName>
            <shortName evidence="7">OMPDCase</shortName>
            <shortName evidence="7">OMPdecase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">pyrF</name>
        <name evidence="9" type="ORF">BROFUL_00918</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>H(+) + orotidine 5'-phosphate = CO2 + UMP</text>
            <dbReference type="Rhea" id="RHEA:11596"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57538"/>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
            <dbReference type="EC" id="4.1.1.23"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; UMP from orotate: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the OMP decarboxylase family. Type 2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.23" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000110">
        <property type="protein sequence ID" value="KKO20361.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20361">
        <property type="protein sequence ID" value="KKO20361"/>
        <property type="gene ID" value="BROFUL_00918"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1157"/>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00120"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004590">
        <property type="term" value="F:orotidine-5'-phosphate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006207">
        <property type="term" value="P:'de novo' pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01215">
        <property type="entry name" value="OMPdecase_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018089">
        <property type="entry name" value="OMPdecase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011995">
        <property type="entry name" value="OMPdecase_type-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001754">
        <property type="entry name" value="OMPdeCOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43375">
        <property type="entry name" value="PTHR43375"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00215">
        <property type="entry name" value="OMPdecase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00934">
        <property type="entry name" value="OMPdecase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="SSF51366"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02127">
        <property type="entry name" value="pyrF_sub2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00156">
        <property type="entry name" value="OMPDECASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="6 7" id="KW-0456">Lyase</keyword>
    <keyword evidence="5 7" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OMPdecase" evidence="8">
        <location>
            <begin position="25"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="7">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001419"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004861"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01215"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00934"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20361.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="319" mass="35153" checksum="B170ADB12323AFF2" modified="2015-11-11" version="1">MAGDSDSKDNFADQLITAIFEKNSCVVVGLDPYFHLIPDTIKQKFSPSRKQALEYASRVILEFNIQVIDLIAPFVNIVKPQIAFYELYGWWGIWAYTETIQYAKRKGLIVIGDVKRSDVPSTAEAYANAHIGDVHVNHAVEVPFGADAITVNPYLGTDSLLPFIQTAQKHRKGIFVLVKTSNPDSGEFQDLTCGEKKLHEIIAEKTHAWGKDFVGKQGYSAVGAVVGATFSREISILRKIMPTAYFLVPGYGAQGATVKDIGYCFNPDGLGAIINASRSILYAYTVSPWKEKYGVSSWKSATEEAIVKMNKEIGTVLEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZH4</accession>
    <name>A0A0M2UZH4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01408</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000145">
        <property type="protein sequence ID" value="KKO19894.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19894">
        <property type="protein sequence ID" value="KKO19894"/>
        <property type="gene ID" value="BROFUL_01408"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19894.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="75" mass="8880" checksum="FAE386D9D54124BD" modified="2015-11-11" version="1">MAFISKGQRMARETNRTHLLLALDKKVPVSTVMQVLSVSYTIIYSTRSACVVLEWKHTKARQNRMMQRKRVYERH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZI0</accession>
    <name>A0A0M2UZI0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">XFP_N domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01386</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000143">
        <property type="protein sequence ID" value="KKO19899.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19899">
        <property type="protein sequence ID" value="KKO19899"/>
        <property type="gene ID" value="BROFUL_01386"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1708"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016832">
        <property type="term" value="F:aldehyde-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005593">
        <property type="entry name" value="Xul5P/Fru6P_PKetolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019790">
        <property type="entry name" value="Xul5P/Fru6P_PKetolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018970">
        <property type="entry name" value="Xul5P/Fru6P_PKetolase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019789">
        <property type="entry name" value="Xul5P/Fru6P_PKetolase_ThDP_BS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31273">
        <property type="entry name" value="PTHR31273"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09364">
        <property type="entry name" value="XFP_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS60002">
        <property type="entry name" value="PHOSPHOKETOLASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS60003">
        <property type="entry name" value="PHOSPHOKETOLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0786">Thiamine pyrophosphate</keyword>
    <feature type="domain" description="XFP_N" evidence="2">
        <location>
            <begin position="5"/>
            <end position="363"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09364"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19899.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="380" mass="42661" checksum="E0048256CDAFE15F" modified="2015-11-11" version="1">MENPLTNKELELMDAYWRACNYLSVGMIYLKDNPLLREPLRPDHVKYRLLGHWGASPALSFVWVHMNRMIVKHDLNAIFVAGPGHGAPGVLGPAYLESTYSEIYPDKSEDAEGMQKFFKQFSFPGHIGSHVTPETPGSIHEGGELGYSLSHAYGMALDNPDLIVACVVGDGEAETGPLATAWHSNKFINPVRDGMVLPILNLNGYKIANPTILARISHQELEALFVGYGYKPYFVEGSDPVEMHKKMAATLEEAIGEIRAQQKKARESNNPFRPRWPMIVLRSPKGWTGPKEIKGHKVEGFWRSHQVPFADVRNNPVNLKLLEDWMRSYRHEELFDANGRLIPELKALAPRGNRRMSANRMPTAGSCARNSSCLIFATMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZN3</accession>
    <name>A0A0M2UZN3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Aldehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01346</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000139">
        <property type="protein sequence ID" value="KKO19954.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19954">
        <property type="protein sequence ID" value="KKO19954"/>
        <property type="gene ID" value="BROFUL_01346"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1662"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004029">
        <property type="term" value="F:aldehyde dehydrogenase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044638">
        <property type="entry name" value="ALDH7A1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43521">
        <property type="entry name" value="PTHR43521"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="2">
        <location>
            <begin position="12"/>
            <end position="463"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19954.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="493" mass="53761" checksum="C9B337E1027B37C9" modified="2015-11-11" version="1">MEGKNYINGIFVNGSSGDRFESRNPANTDEVLGTFPSSTDKDVNNAVSAAKAAYQGWKCLSRIKRGEYLDAFTQLLKAGHEEISQLVTRECGKGIVEGRADVTEGIHMCQYVFGTVRMPHGDVIDSEIPEKDAFLRRKPKGVVAAITPWNFPFAIPLWLICPSVVEGNTVILKPSRETACTAHKIAEYAHKAGFPPGVINVVQGGCGDLLVKHPDVHVVLFVGSNDVGSGIKQIVAGFRDKMCACEMGGKNAVIVLDDANLDIAVNAAIISAFKTSGQRCTSASRLIVHEKILSNFEKRFIELTKRIKIGNPLDETVFMGPVINQAATEKVARYNDLAREEGAEVLCNGGMLVGEPFKKGYFMSPFVYRMENNPKSRVLREEVFGPHVAIIPVKDIDEAIGVYNDTDYGLSCAVITEDYRKAKRIRDDCEYGLGYVNLPTIGAEVHLPFGGVKKSGTGLPSASTLIDVVTHRTAWTVNHAKKIKMAQGLTVKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V068</accession>
    <name>A0A0M2V068_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha</fullName>
            <shortName evidence="10">ACCase subunit alpha</shortName>
            <shortName evidence="10">Acetyl-CoA carboxylase carboxyltransferase subunit alpha</shortName>
            <ecNumber evidence="10">2.1.3.15</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">accA</name>
        <name evidence="12" type="ORF">BROFUL_00008</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>acetyl-CoA + N(6)-carboxybiotinyl-L-lysyl-[protein] = malonyl-CoA + N(6)-biotinyl-L-lysyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:54728"/>
            <dbReference type="Rhea" id="RHEA-COMP:10505"/>
            <dbReference type="Rhea" id="RHEA-COMP:10506"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:57384"/>
            <dbReference type="ChEBI" id="CHEBI:83144"/>
            <dbReference type="ChEBI" id="CHEBI:83145"/>
            <dbReference type="EC" id="2.1.3.15"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 10">Lipid metabolism; malonyl-CoA biosynthesis; malonyl-CoA from acetyl-CoA: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Acetyl-CoA carboxylase is a heterohexamer composed of biotin carboxyl carrier protein (AccB), biotin carboxylase (AccC) and two subunits each of ACCase subunit alpha (AccA) and ACCase subunit beta (AccD).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the AccA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.3.15" evidence="10"/>
    <dbReference type="EMBL" id="LAQJ01000003">
        <property type="protein sequence ID" value="KKO21255.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21255">
        <property type="protein sequence ID" value="KKO21255"/>
        <property type="gene ID" value="BROFUL_00008"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.15"/>
    <dbReference type="UniPathway" id="UPA00655">
        <property type="reaction ID" value="UER00711"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009317">
        <property type="term" value="C:acetyl-CoA carboxylase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003989">
        <property type="term" value="F:acetyl-CoA carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016743">
        <property type="term" value="F:carboxyl- or carbamoyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:2001295">
        <property type="term" value="P:malonyl-CoA biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00823">
        <property type="entry name" value="AcetylCoA_CT_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001095">
        <property type="entry name" value="Acetyl_CoA_COase_a_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011763">
        <property type="entry name" value="COA_CT_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42853">
        <property type="entry name" value="PTHR42853"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03255">
        <property type="entry name" value="ACCA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01069">
        <property type="entry name" value="ACCCTRFRASEA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00513">
        <property type="entry name" value="accA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50989">
        <property type="entry name" value="COA_CT_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 10" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="6 10" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="3 10" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="8 10" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 10 12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="CoA carboxyltransferase C-terminal" evidence="11">
        <location>
            <begin position="42"/>
            <end position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO21255.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="320" mass="35637" checksum="BE96570C13881484" modified="2015-11-11" version="1">MSEKTVAELENLILEIEHQIEDLQSASSNDHLDRGTEIQHLRERRERLQVRLCTKLTPYDIVKLARHPLRPLSADYVNMMIDDFVELHGDKRFGDDKAMICGLGKIGKERILFIGQQKGKSTKERIACNFGMPNPEGYRKALQKMKLAEKFHLPVVTLIDTPGANPDIGAEERGQAHAIAENIYEMCRLKTPIINIVIGEGGSGGALGIGIGDKFAILEYAYYSVISPEGCAAILWKNAENAPASAMALQLTAKDLLRFGVVDEVIPEPLGAAHKNPKAMADILKTQITKYLAELKGVPMNDLIANRYARYRKVGKYREE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0A2</accession>
    <name>A0A0M2V0A2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7">30S ribosomal protein S20</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rpsT</name>
        <name evidence="9" type="ORF">BROFUL_01128</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Binds directly to 16S ribosomal RNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the bacterial ribosomal protein bS20 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20169.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20169">
        <property type="protein sequence ID" value="KKO20169"/>
        <property type="gene ID" value="BROFUL_01128"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1398"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00500">
        <property type="entry name" value="Ribosomal_S20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002583">
        <property type="entry name" value="Ribosomal_S20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036510">
        <property type="entry name" value="Ribosomal_S20_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33398">
        <property type="entry name" value="PTHR33398"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01649">
        <property type="entry name" value="Ribosomal_S20p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46992">
        <property type="entry name" value="SSF46992"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00029">
        <property type="entry name" value="S20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5 7 9" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 7" id="KW-0699">rRNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="66"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="77"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00015666"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20169.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="94" mass="10691" checksum="75D63D39952C571C" modified="2015-11-11" version="1">MPTMKSAKKRLRQNIKQNLRNRDCRSALKTQIKKFLGVAKEGKVQAAEEELRLTVKKLDKAAAKGILHKNTASRKKSRFTTKLNQMKAAAQQKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0C1</accession>
    <name>A0A0M2V0C1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Putative biopolymer transporter protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_00629</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Membrane</location>
            <topology evidence="1 6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the exbB/tolQ family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20646">
        <property type="protein sequence ID" value="KKO20646"/>
        <property type="gene ID" value="BROFUL_00629"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002898">
        <property type="entry name" value="MotA_ExbB_proton_chnl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01618">
        <property type="entry name" value="MotA_ExbB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0653">Protein transport</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="107"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="152"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="domain" description="MotA_ExbB" evidence="9">
        <location>
            <begin position="81"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="7">
        <location>
            <begin position="170"/>
            <end position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004057"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO20646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="202" mass="22008" checksum="2312CEF70DC3BF18" modified="2015-11-11" version="1">MVHLFLRGGPVMWPILVASLAALTVIIERIAFLIREKRSRYPETVGKIFSEVEKGKIEEAIQAGEGCGDFVAVTLVYGLRHRHKAFSNALLQAANKELKRFNRGLPVLDTIITLAPLLGLFGTVIGMIQAFGLLGGRELEAPAVITGGIAEALIATAYGLLTAIVALIPFNYLNARLEEARHEIEDATAHLELLLLKQDKNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V196</accession>
    <name>A0A0M2V196_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00333</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000042">
        <property type="protein sequence ID" value="KKO20931.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20931">
        <property type="protein sequence ID" value="KKO20931"/>
        <property type="gene ID" value="BROFUL_00333"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="30"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="56"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20931.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="88" mass="9660" checksum="F6A68B5BD4564B0D" modified="2015-11-11" version="1">MSFAFVCAGWFVGYFLLRFGMVSRGNMCQVIQFIGGLLCTAVLISSFFFVGWLKALLGLAVFSFVITPIVEIIIGRIGAAINIPYQKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1G1</accession>
    <name>A0A0M2V1G1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Cupin_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00677</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20559.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20559">
        <property type="protein sequence ID" value="KKO20559"/>
        <property type="gene ID" value="BROFUL_00677"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013096">
        <property type="entry name" value="Cupin_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07883">
        <property type="entry name" value="Cupin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cupin_2" evidence="1">
        <location>
            <begin position="32"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20559.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="100" mass="11181" checksum="51D76736B934B480" modified="2015-11-11" version="1">MEPIFLEEKIKFNKDHFIPNILYASPKVKMPLICLEPGQEIPPHGGHSVGIFYVKEGKGIFTLDNKKIDMKKDMVIIAPEGATRGMQCIERMVVLAISVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V3E3</accession>
    <name>A0A0M2V3E3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00091</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000009">
        <property type="protein sequence ID" value="KKO21184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21184">
        <property type="protein sequence ID" value="KKO21184"/>
        <property type="gene ID" value="BROFUL_00091"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="99" mass="11307" checksum="40D2076566F73E65" modified="2015-11-11" version="1" fragment="single">MRQTEIHLTEEDKAALKVFRSKGKHMAREINRAHILLALDEKMPELLIMQVLGVGRTTIWRTRSAYVEKGLDYALHDVARPGQPRQYGIDQQAEIVALA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ34</accession>
    <name>A0A0M2UQ34_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03096</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000286">
        <property type="protein sequence ID" value="KKO18198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18198">
        <property type="protein sequence ID" value="KKO18198"/>
        <property type="gene ID" value="BROFUL_03096"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3823"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="143" mass="16798" checksum="C79DC58F6288894A" modified="2015-11-11" version="1">MKIYLDNCCFNRPFDDQSQLRIRLETEAKLKIQEEVRAGKLKWSYILDYENSKNPYEERKFRIRGWAKYALINIKENAEIIKRTNLLNQKGFRKLDSLHIACAITAKCDHFLSTDDKILSLSKTLEGKIKVTDPIVFIKEVLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQG9</accession>
    <name>A0A0M2UQG9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Stage V sporulation protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_03416</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000312">
        <property type="protein sequence ID" value="KKO17905.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17905">
        <property type="protein sequence ID" value="KKO17905"/>
        <property type="gene ID" value="BROFUL_03416"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4197"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000917">
        <property type="term" value="P:division septum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030435">
        <property type="term" value="P:sporulation resulting in formation of a cellular spore"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1120.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007170">
        <property type="entry name" value="SpoVG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036751">
        <property type="entry name" value="SpoVG_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38429">
        <property type="entry name" value="PTHR38429"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04026">
        <property type="entry name" value="SpoVG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160537">
        <property type="entry name" value="SSF160537"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="1" id="KW-0132">Cell division</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0717">Septation</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="119"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="119"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="4">
        <location>
            <begin position="137"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO17905.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="155" mass="17616" checksum="F290677C7AB58779" modified="2015-11-11" version="1">MNITEVRVKLTEGKKNRLQAFCSITIDDDFVVRDLKVIEGHKGTFVAMPSRKLTDRCPNCGGKNHLMAQYCNDCGTKLNEKRASRGAGRLKLHADTAHPINSNCRELIQEKVLTAFREEVDKSKQPGYKPPKYEDIEDVDYDDLIDDLESEKNDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQP7</accession>
    <name>A0A0M2UQP7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02924</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18418">
        <property type="protein sequence ID" value="KKO18418"/>
        <property type="gene ID" value="BROFUL_02924"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023614">
        <property type="entry name" value="Porin_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="31"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="348" mass="39461" checksum="4841D44B5D663CB3" modified="2015-11-11" version="1">MRFMWYGALIVALCLVPVFFISNAFAESSETEMLRSKVDKMEKELSEVKDLLKQQLERDMKKGQEIAELREKDAKKDKEIASLKKEVAETQVVPSEEGSIGGEAYFAKKYDDVEKKHLGPAFRDPYTKPFLRRFGRNTYVGGYMDFEYWASESDSGNHGFDQHRFIPFIYSDISDRVKLAAEIEFEHGGVEGGRDGEVILEFATMDFLITDWINYRAGFILTPLGKFNLVHDSPLQDLTDRPLISQYIIPTTLTDAGMGFFGSLYPTELGKLDYEVYVTNGVFHGLDDAGDSDFTANRGLRASRGGFEFDNENQSLVLSDALRIAHLSVWNLAVLPIRSGMMTKTRIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQX3</accession>
    <name>A0A0M2UQX3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative formate dehydrogenase cytochrome b subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03273</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000299">
        <property type="protein sequence ID" value="KKO18050.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18050">
        <property type="protein sequence ID" value="KKO18050"/>
        <property type="gene ID" value="BROFUL_03273"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036280">
        <property type="entry name" value="Multihaem_cyt_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48695">
        <property type="entry name" value="SSF48695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="309"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18050.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="350" mass="38693" checksum="A499B35A50978A77" modified="2015-11-11" version="1">MVYKSEKSLRGEVLSSFKKIKLCVLVVVSVAIIGLSPAVLTAGDNGPCIECHTKPDKLKTVEKAKINPVTGEIKVVSMVVDEVTFKASAHGGEDFFCTDCHQDLDGADLTEGHKPNLKPVDCITFCHDDPADDYLQSNHVKLMKQNNKDVPTCKDCHAGLTYHYTSLGEKSPMDVPRGTDPLHRRLTIESCGECHQEYLDSYRNNAHGQVTALGHTDTDVPVCFDCHGKHKILNSTDPESKVGKEKILETCGNCHAGANASFVKHVEHPQIKNINYYKKLISAIKEARSNPENLKTILKNPQTILCAVFVMYVGILAFTFSSFGIHSLLSWFAVARDEYKGKGHTDEEQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR69</accession>
    <name>A0A0M2UR69_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">RNA polymerase sigma factor SigA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">sigA</name>
        <name evidence="9" type="ORF">BROFUL_03174</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Interacts transiently with the RNA polymerase catalytic core.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the sigma-70 factor family. RpoD/SigA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18125">
        <property type="protein sequence ID" value="KKO18125"/>
        <property type="gene ID" value="BROFUL_03174"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3915"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.220.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00963">
        <property type="entry name" value="Sigma70_RpoD_SigA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000943">
        <property type="entry name" value="RNA_pol_sigma70"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009042">
        <property type="entry name" value="RNA_pol_sigma70_r1_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007624">
        <property type="entry name" value="RNA_pol_sigma70_r3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007630">
        <property type="entry name" value="RNA_pol_sigma70_r4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007127">
        <property type="entry name" value="RNA_pol_sigma_70_r1_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042189">
        <property type="entry name" value="RNA_pol_sigma_70_r1_1_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012760">
        <property type="entry name" value="RNA_pol_sigma_RpoD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028630">
        <property type="entry name" value="Sigma70_RpoD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03979">
        <property type="entry name" value="Sigma70_r1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00140">
        <property type="entry name" value="Sigma70_r1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04539">
        <property type="entry name" value="Sigma70_r3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04545">
        <property type="entry name" value="Sigma70_r4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00046">
        <property type="entry name" value="SIGMA70FCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02393">
        <property type="entry name" value="RpoD_Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00716">
        <property type="entry name" value="SIGMA70_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0731">Sigma factor</keyword>
    <keyword evidence="5 6" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 6" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="RNA_pol_sigma70" evidence="8">
        <location>
            <begin position="505"/>
            <end position="531"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="6">
        <location>
            <begin position="506"/>
            <end position="525"/>
        </location>
    </feature>
    <feature type="region of interest" description="Sigma-70 factor domain-2" evidence="6">
        <location>
            <begin position="312"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="region of interest" description="Sigma-70 factor domain-3" evidence="6">
        <location>
            <begin position="391"/>
            <end position="467"/>
        </location>
    </feature>
    <feature type="region of interest" description="Sigma-70 factor domain-4" evidence="6">
        <location>
            <begin position="480"/>
            <end position="533"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="7">
        <location>
            <begin position="243"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Interaction with polymerase core subunit RpoC" evidence="6">
        <location>
            <begin position="336"/>
            <end position="339"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS00716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="550" mass="64265" checksum="501A4A1215CCF201" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URJ1</accession>
    <name>A0A0M2URJ1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03065</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000284">
        <property type="protein sequence ID" value="KKO18255.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18255">
        <property type="protein sequence ID" value="KKO18255"/>
        <property type="gene ID" value="BROFUL_03065"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025522">
        <property type="entry name" value="DUF4410"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14366">
        <property type="entry name" value="DUF4410"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18255.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="185" mass="20033" checksum="38E4CE8FE94BCA8C" modified="2015-11-11" version="1" fragment="single">MNNQNKDDAQDHQPLNFFMKSSAGVPSLQKKTSAIVAGLFALAFLAGCASTKVSDQQQLVHGKIPRPDHILVYDFVATYGDVPSDSSIAGEYAEHETPQTEEEIETGRQIGAEIATELVEAIRGMGMPAERYNKEMMPETNDILIRGYLLTFSEGSAVKRMTIGFGSGSSKLQVVAEGYQVTAQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URQ5</accession>
    <name>A0A0M2URQ5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Flavoprotein WrbA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">wrbA</name>
        <name evidence="3" type="ORF">BROFUL_02982</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the WrbA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000281">
        <property type="protein sequence ID" value="KKO18325.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18325">
        <property type="protein sequence ID" value="KKO18325"/>
        <property type="gene ID" value="BROFUL_02982"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3688"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003955">
        <property type="term" value="F:NAD(P)H dehydrogenase (quinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008254">
        <property type="entry name" value="Flavodoxin/NO_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010089">
        <property type="entry name" value="Flavoprotein_WrbA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005025">
        <property type="entry name" value="FMN_Rdtase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03358">
        <property type="entry name" value="FMN_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01755">
        <property type="entry name" value="flav_wrbA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50902">
        <property type="entry name" value="FLAVODOXIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavodoxin-like" evidence="2">
        <location>
            <begin position="3"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006961"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18325.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="204" mass="22200" checksum="47619266B8EE43E2" modified="2015-11-11" version="1">MQVLIVYYSTYGNVYKMAKLVAEGVQEVKGATPLIRRVPELIPSSVIESREDMKAGREMQKDVPLVTLDDFKAASAIAFGTPTRFGNVSAQLKNQIDQLTSLWFTGELESKPASIFVSTASLHGGQETTILTLMGPLLHLGMILVGVPYSVKELFSTQGGGSPYGPGHIAGLDNKREIDPQEALICRALGRRLAEIGLRLQKKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URS4</accession>
    <name>A0A0M2URS4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02735</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000254">
        <property type="protein sequence ID" value="KKO18567.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18567">
        <property type="protein sequence ID" value="KKO18567"/>
        <property type="gene ID" value="BROFUL_02735"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18567.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="74" mass="8442" checksum="5DDCD95A37E37AA3" modified="2015-11-11" version="1">MNDIEKLRQLLPHWLEHNAEHASEFLKWANRARATGEDRLAHHLEAAAKKLEAAKHDLARAIEQGGQAEDSCHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URY6</accession>
    <name>A0A0M2URY6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02499</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18838.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18838">
        <property type="protein sequence ID" value="KKO18838"/>
        <property type="gene ID" value="BROFUL_02499"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18838.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="61" mass="6762" checksum="0CA7380002768971" modified="2015-11-11" version="1">MCYECGCGNEDTIMSSDSITGKTFEKAAQGSGITKRQAMENTFVLLKKILGKNEILDKEKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US69</accession>
    <name>A0A0M2US69_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02814</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000265">
        <property type="protein sequence ID" value="KKO18490.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18490">
        <property type="protein sequence ID" value="KKO18490"/>
        <property type="gene ID" value="BROFUL_02814"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18490.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="835" mass="96162" checksum="E442544AFA670ADF" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US86</accession>
    <name>A0A0M2US86_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Putative biopolymer transporter protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_02775</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Membrane</location>
            <topology evidence="1 6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the exbB/tolQ family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000264">
        <property type="protein sequence ID" value="KKO18505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18505">
        <property type="protein sequence ID" value="KKO18505"/>
        <property type="gene ID" value="BROFUL_02775"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002898">
        <property type="entry name" value="MotA_ExbB_proton_chnl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01618">
        <property type="entry name" value="MotA_ExbB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0653">Protein transport</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="106"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="domain" description="MotA_ExbB" evidence="8">
        <location>
            <begin position="72"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004057"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="230" mass="26232" checksum="F81589DFD085B7BC" modified="2015-11-11" version="1">MEWLIGGGPIMIPLLICSILALAVIIERAINLRRNHILKPEIIRTIETIRSQQDIPLALSKCEVIPGPFSNLLRRILTNNHLTREEKFIDIQAAGRQETKSLERRLLVLEVITAVAPLLGLLGTVLGLEDIFGIISELGLGQAKRFPRGLQKRSEQPYSDFLSQSRPWLLIVISIKKWIPLSWRWKNTPCTFSINFILLRTAGKTEFSFSGCPRDKQWFMYGLIIIFFAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US98</accession>
    <name>A0A0M2US98_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02785</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000264">
        <property type="protein sequence ID" value="KKO18515.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18515">
        <property type="protein sequence ID" value="KKO18515"/>
        <property type="gene ID" value="BROFUL_02785"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18515.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="41" mass="4625" checksum="97D2F01A212E9DDB" modified="2015-11-11" version="1">MPLVISRGNLKDSGALGERVLKKRRLPANLMHYDVPFSGMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USC4</accession>
    <name>A0A0M2USC4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03434</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000313">
        <property type="protein sequence ID" value="KKO17886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17886">
        <property type="protein sequence ID" value="KKO17886"/>
        <property type="gene ID" value="BROFUL_03434"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001352">
        <property type="entry name" value="RNase_HII/HIII"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10954">
        <property type="entry name" value="PTHR10954"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO17886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="321" mass="35922" checksum="19256B82942019A1" modified="2015-11-11" version="1">MAIIAGIDEAGYGPVLGPMVTTIVAFHVPDEKIDHSLWDLLKDAVSSDLKGGNQRIAVRDSKKLYRPQHGPGLKPLEVGALSFLESKGLNITSFCQLLDSLSYHAAGGLSLYPWYAGKDYPLPLTTNRIVIVNSADALNQAFDKQGVRFFHASSCVVPVQEFNEQIRLFRNKSLVLFKACAGLVSRLWNLPGGHIRLMVDKQGGRNTYTSLLREQLSHADIRVVKEGDKVSTYEVEAVQKKMTISFVEKGEDLCMAVALASMFSKYIRELFMRLENQYWTHLLPGLKPTAGYYSDAQRFLAEIAPVRESEKIQDDILIRMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USK3</accession>
    <name>A0A0M2USK3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">SprT-like family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03343</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000306">
        <property type="protein sequence ID" value="KKO17971.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17971">
        <property type="protein sequence ID" value="KKO17971"/>
        <property type="gene ID" value="BROFUL_03343"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051716">
        <property type="term" value="P:cellular response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024498">
        <property type="entry name" value="DUF2786"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006640">
        <property type="entry name" value="SprT-like_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10979">
        <property type="entry name" value="DUF2786"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10263">
        <property type="entry name" value="SprT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SprT-like" evidence="1">
        <location>
            <begin position="52"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="domain" description="DUF2786" evidence="2">
        <location>
            <begin position="144"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF10979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO17971.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="368" mass="43221" checksum="E55A5E95FAC23D8A" modified="2015-11-11" version="1">MCLFYPMITINDKLKTAWLRQLHEDWKTANFLYFHEDMRPPNYELAHSGVTLGRWKGGCHRRLSISIVLINTYSWEYVQEVLYHEMVHQYVEEILGICEEVPHGEAFRRVCQEKGIDPTATGDLHVWMEKRGSRCTVSSGNHQILDKVHKLLALAQSPNEHEAQTAMTKAHELLLRYNLSLLDTQTKGNYLHKQIGEIGRRDPAKSTVSAILCKYFFVEVIWTFGYDQHRNRRGRVLEIYGAPENVEMAEYVYHYLLNVSELLWKEYKGKNMINGNRHRRTFIYGLLEGFYHKLEDSGRENVSQKLVWKGDPQLREYYQQRNPRRTRASSRYSRTCQNAYNSGVFQGKKLIIHKGIRESGDGEVRYLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT03</accession>
    <name>A0A0M2UT03_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03208</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000293">
        <property type="protein sequence ID" value="KKO18106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18106">
        <property type="protein sequence ID" value="KKO18106"/>
        <property type="gene ID" value="BROFUL_03208"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="266" mass="31098" checksum="6702757217BDA888" modified="2015-11-11" version="1">MLCNLYSNYYPRSTFDLKHYQPYQERYGFKAWFDGAYCSAFRWVPKNVCVLDIGCGLGETLGYHQSRGCDAYGVEVDENIRRVADKFGYKIHVGLFDSNLYESNFFDYITMDQVIEHVNDPLETMRGIAKVLKPGGVAILSTPNSNGWGAKLFGRYWINWHVPYHCQFFSVNSMKLVAEQAGLSFERFKTITNTEWLYYQWVHLLTFPKMGEPSIFWSPLMNRGFKEKVLFKLVALSRLSKMNHIITRFFDALGMGDNYLFFLRKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT18</accession>
    <name>A0A0M2UT18_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02076</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000209">
        <property type="protein sequence ID" value="KKO19198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19198">
        <property type="protein sequence ID" value="KKO19198"/>
        <property type="gene ID" value="BROFUL_02076"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2589"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1240.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003759">
        <property type="entry name" value="Cbl-bd_cap"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006158">
        <property type="entry name" value="Cobalamin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036724">
        <property type="entry name" value="Cobalamin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036594">
        <property type="entry name" value="Meth_synthase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02310">
        <property type="entry name" value="B12-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02607">
        <property type="entry name" value="B12-binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01018">
        <property type="entry name" value="B12-binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47644">
        <property type="entry name" value="SSF47644"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52242">
        <property type="entry name" value="SSF52242"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51337">
        <property type="entry name" value="B12_BINDING_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="B12-binding N-terminal" evidence="2">
        <location>
            <begin position="1"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="domain" description="B12-binding" evidence="1">
        <location>
            <begin position="93"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="237" mass="25445" checksum="EA9B7A575846CDEF" modified="2015-11-11" version="1">MHKEKSDILGNLAQAVIDMDVTRASKAAAEAIISHIDPYEAITDGLARGMDVVSELFENEEYFVPEILLCADAMYAGIEVLKPHFPKEAASNKKKVVIGVVKGDTHDIGKNLVKIMLDNAGFEMHDLGRNVPYAKFIDTAGELNADLVCLSTLMTTTMDGMQVVIEDMKKAGIPARVMVGGGPISPGFARNIGADGYARNAAEAVKVAKSMFQGIQIPLAMKTPELVSIRKKLGGVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT32</accession>
    <name>A0A0M2UT32_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Porin B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">oprB</name>
        <name evidence="3" type="ORF">BROFUL_02062</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the OprB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000208">
        <property type="protein sequence ID" value="KKO19218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19218">
        <property type="protein sequence ID" value="KKO19218"/>
        <property type="gene ID" value="BROFUL_02062"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015288">
        <property type="term" value="F:porin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008643">
        <property type="term" value="P:carbohydrate transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007049">
        <property type="entry name" value="Carb-sel_porin_OprB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038673">
        <property type="entry name" value="OprB_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04966">
        <property type="entry name" value="OprB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU363072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="290" mass="32477" checksum="3D78844612C0886D" modified="2015-11-11" version="1">MPEDDVTALTDLYYLQFLAPWVGVMAGKMSLRESNVFASNETEQFMNTAFNFNAALATTFPLVALGGGVILHPVDWLTVSTLAIDSEGTADRSGFDTVFERGTTLYQMAEFTIKPFGLTGHQRIGWTWSDRSRIQFEQNPRNVIGAIITESTAGLERKGHDGSFLYDFDQYLYAVPGKKDRGLGLFGRFGLTDGEVNPVQEFYSIGLGGKGMIPGRDNDSFGVGYYYLTVSDKLPRVIERRTREEQGVELYYNIAVTPWLHITPDFQIIEPTREDVDTTLVAGVRMKIEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT45</accession>
    <name>A0A0M2UT45_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03164</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000290">
        <property type="protein sequence ID" value="KKO18156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18156">
        <property type="protein sequence ID" value="KKO18156"/>
        <property type="gene ID" value="BROFUL_03164"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="38" mass="4383" checksum="063A3FF197593727" modified="2015-11-11" version="1" fragment="single">DGTLTRKNKQMLLRTDTILNFRDSYFSFEAPLGLVSAY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT50</accession>
    <name>A0A0M2UT50_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA polymerase sigma factor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02456</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18795.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18795">
        <property type="protein sequence ID" value="KKO18795"/>
        <property type="gene ID" value="BROFUL_02456"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18795.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="191" mass="22581" checksum="F7E77C702CB2B2C7" modified="2015-11-11" version="1">MDTNYFDMVGRIYSENHEKLINYARKHYPILKQEEIEDVVHDVSIEIIKMIQALSKTGNSIDKKLVIGSFYKRVRCRCIDRGRKKQEESKEEGVLDNKMFKKTNSGIPSEQKWFHPEDAPDNINKEKLNIAMSKMEQECLKTIKLFYLSEASLSHREIANELQISEENSRKRLSRCMKTLKKYFDKEINKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT74</accession>
    <name>A0A0M2UT74_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_03139</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="6">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the peptidase M48 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000287">
        <property type="protein sequence ID" value="KKO18186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18186">
        <property type="protein sequence ID" value="KKO18186"/>
        <property type="gene ID" value="BROFUL_03139"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3872"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001915">
        <property type="entry name" value="Peptidase_M48"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01435">
        <property type="entry name" value="Peptidase_M48"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 6" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="1 6" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Peptidase_M48" evidence="7">
        <location>
            <begin position="78"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="267" mass="29275" checksum="7EFC6BBF5994CCC1" modified="2015-11-11" version="1">MSKLRFLSLLIIVMLLVSCSTVPITGRKQISFIPQSQLIGSSIDAYNQLLSQSKLSSDPTKKQMVVDVGTKIAAAAEGYMRENGMEKELEAYHWEFNLIEDDKTVNAFCMPGGKIAVYTGILPITQDETGLAVVMGHEVAHALANHGGERMSQALLAQLGATSLSVALSSQPAMTKELLMQAYGVGANVGVLLPYSRRQELEADHIGLILMAKADYDPRTAIPFWQRMGNVGGERPPEFLSTHPAPERRVEDIRDKIPEALKYYKGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTE5</accession>
    <name>A0A0M2UTE5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01953</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000200">
        <property type="protein sequence ID" value="KKO19338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19338">
        <property type="protein sequence ID" value="KKO19338"/>
        <property type="gene ID" value="BROFUL_01953"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035069">
        <property type="entry name" value="TTHA1013/TTHA0281-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143100">
        <property type="entry name" value="SSF143100"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="66" mass="7470" checksum="FE344616B979E2F9" modified="2015-11-11" version="1">MKIKVIVEEGEDGYLVARCPSLKSCWSQGKTEEEALMNIKEAIGLYLEPDEVLIEDSKHKVYEVAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTL5</accession>
    <name>A0A0M2UTL5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NTP_transferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02135</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19152.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19152">
        <property type="protein sequence ID" value="KKO19152"/>
        <property type="gene ID" value="BROFUL_02135"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005835">
        <property type="entry name" value="NTP_transferase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00483">
        <property type="entry name" value="NTP_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NTP_transferase" evidence="1">
        <location>
            <begin position="9"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19152.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="243" mass="26124" checksum="F7C9AFC51B40D567" modified="2015-11-11" version="1">MNNLTKITATILAGGFGTRLCSVISGQPKVLAKVNGRPFMAYLLDQLSQAGVKKVVLCTGYLGEQVKATFGKFYNDLVLSYSQEQSALGTGGALRRALPVLKSDPVLVLNGDSFCQTDFICFLNQHITGKATASLLVAEVPDIGRYGSVKLSADDEIISFEEKGKKTGTGLINAGVYLLNHTFLESIPKDTNVSLEHEIFPLWISKGLYGFRSKGNFIDIGVPQDYAAAGGFLKSSIKAFSIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTT4</accession>
    <name>A0A0M2UTT4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">50S ribosomal protein L11</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rplK</name>
        <name evidence="11" type="ORF">BROFUL_02263</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 8">Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Part of the ribosomal stalk of the 50S ribosomal subunit. Interacts with L10 and the large rRNA to form the base of the stalk. L10 forms an elongated spine to which L12 dimers bind in a sequential fashion forming a multimeric L10(L12)X complex.</text>
    </comment>
    <comment type="PTM">
        <text evidence="6 8">One or more lysine residues are methylated.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the universal ribosomal protein uL11 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000224">
        <property type="protein sequence ID" value="KKO19020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19020">
        <property type="protein sequence ID" value="KKO19020"/>
        <property type="gene ID" value="BROFUL_02263"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2825"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070180">
        <property type="term" value="F:large ribosomal subunit rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00349">
        <property type="entry name" value="Ribosomal_L11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.250">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00736">
        <property type="entry name" value="Ribosomal_L11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000911">
        <property type="entry name" value="Ribosomal_L11/L12"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036796">
        <property type="entry name" value="Ribosomal_L11/L12_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006519">
        <property type="entry name" value="Ribosomal_L11_bac-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020783">
        <property type="entry name" value="Ribosomal_L11_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036769">
        <property type="entry name" value="Ribosomal_L11_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020785">
        <property type="entry name" value="Ribosomal_L11_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020784">
        <property type="entry name" value="Ribosomal_L11_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11661">
        <property type="entry name" value="PTHR11661"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00298">
        <property type="entry name" value="Ribosomal_L11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03946">
        <property type="entry name" value="Ribosomal_L11_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00649">
        <property type="entry name" value="RL11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46906">
        <property type="entry name" value="SSF46906"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54747">
        <property type="entry name" value="SSF54747"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01632">
        <property type="entry name" value="L11_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00359">
        <property type="entry name" value="RIBOSOMAL_L11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0488">Methylation</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 6 8" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 6 8" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_L11_N" evidence="10">
        <location>
            <begin position="9"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="Ribosomal_L11" evidence="9">
        <location>
            <begin position="71"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010537"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00736"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003978"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF03946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO19020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="141" mass="15031" checksum="6B1104E84FB3D32D" modified="2015-11-11" version="1">MAKEILTKIKLQCPGGQATPAPPVGPALGQHGVNIGQFVKQFNDKTKDLQGMVTPVEITVFKDKSFTFILKSPPASVLIKQLAGVAKGSAEPNKQKVGQVTRQQLKEIASRKLADLNADDLEAAAKVIEGTARNMGVRVVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTV5</accession>
    <name>A0A0M2UTV5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Ion-translocating oxidoreductase complex subunit B</fullName>
            <ecNumber evidence="5">7.-.-.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Rnf electron transport complex subunit B</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rnfB</name>
        <name evidence="8" type="ORF">BROFUL_03420</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="5">Binds 3 [4Fe-4S] clusters.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">The complex is composed of six subunits: RnfA, RnfB, RnfC, RnfD, RnfE and RnfG.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.-.-.-" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000312">
        <property type="protein sequence ID" value="KKO17909.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17909">
        <property type="protein sequence ID" value="KKO17909"/>
        <property type="gene ID" value="BROFUL_03420"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4201"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00463">
        <property type="entry name" value="RsxB_RnfB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007202">
        <property type="entry name" value="4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010207">
        <property type="entry name" value="Elect_transpt_cplx_RnfB/RsxB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00037">
        <property type="entry name" value="Fer4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13187">
        <property type="entry name" value="Fer4_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04060">
        <property type="entry name" value="FeS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01944">
        <property type="entry name" value="rnfB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51656">
        <property type="entry name" value="4FE4S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 5" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0249">Electron transport</keyword>
    <keyword evidence="3 5" id="KW-0408">Iron</keyword>
    <keyword evidence="4 5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-1278">Translocase</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="domain" description="4Fe-4S" evidence="7">
        <location>
            <begin position="32"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="6">
        <location>
            <begin position="131"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="6">
        <location>
            <begin position="160"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="6">
        <location>
            <begin position="205"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="6">
        <location>
            <begin position="234"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="region of interest" description="Hydrophobic" evidence="5">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="49"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="52"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="57"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="74"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="145"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="149"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="169"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="172"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="175"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="179"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00463"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO17909.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="274" mass="28922" checksum="9AA219F91585B2BE" modified="2015-11-11" version="1">MEVLLGAAITLVILGAVFGMGLAIASDKFAVKVDSRIESINEVLPGVNCGACGQPGCSGFAQAVVEGKAPVTGCTVGQAAVAELVANIMGVTFEKKERTVAVVMCHAKGVKNKFVYQGVRDCRAAHVVGGGFLGCDYGCLGLGTCVEACKFEAMYMGEEGLPKVIEERCTACGKCAAVCPRKLISIVPVSKMVHVRCKSLDKGAVAKKICQDSCIACKRCEKICPYDAIHVQNNLAVIDYHKCTSCGKCVEVCPNHTIINLARKRSLAKRTLTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTW3</accession>
    <name>A0A0M2UTW3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03370</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17919">
        <property type="protein sequence ID" value="KKO17919"/>
        <property type="gene ID" value="BROFUL_03370"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006158">
        <property type="entry name" value="Cobalamin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036724">
        <property type="entry name" value="Cobalamin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034466">
        <property type="entry name" value="Methyltransferase_Class_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02310">
        <property type="entry name" value="B12-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01123">
        <property type="entry name" value="methyltransferase_(Class_B)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52242">
        <property type="entry name" value="SSF52242"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="B12-binding" evidence="2">
        <location>
            <begin position="1"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="3">
        <location>
            <begin position="210"/>
            <end position="403"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO17919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="403" mass="46435" checksum="C7F95827C2F776BF" modified="2015-11-11" version="1">MNILLIDPPFYRFFNYYNRYFPLGLSYLSSALKKAGHKVIIYDADCNKDSRGMDYTRLPEKYRIYLRELKNPENPFIKEISETFRKYQPDIIGITVMTPKTASAFTIASLAKQYNLDCTVIFGGPHATLRANEILKNTRDVDFVINGEGESVMLELVNALRAKDHTFSEIRGLSYRQGDAQIHNSPRSFIDNLDDLPFPDRESFLGLDTYTSEDMGLLMGSRGCPYRCSYCATQIWTRKVRYRSLANIVEEIREVHLRFGTRQFTFKDDSFTVNRKRVVEFCDILLEAGLKINWDCNTRVDLVDLELLRTMKKAGCNSIKVGIESGSERILALMDKGISLKRIHEAARLFREAGIHWTAYFMLGIPTETEEDVKKTLDLLYKIRPSFASIGVYEPFPERGFLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU03</accession>
    <name>A0A0M2UU03_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_01957</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19297.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19297">
        <property type="protein sequence ID" value="KKO19297"/>
        <property type="gene ID" value="BROFUL_01957"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2438"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013656">
        <property type="entry name" value="PAS_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08448">
        <property type="entry name" value="PAS_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="6"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="51"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="8">
        <location>
            <begin position="72"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="7">
        <location>
            <begin position="252"/>
            <end position="470"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19297.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="475" mass="53677" checksum="9937DC054F3C406E" modified="2015-11-11" version="1">MLKNSLFWKIFISYAGLLCFCLALTGYFISKIIQGYYLDPLTRTMESDMKTVIGYLLLALAITLAIGFVLIRASTFSLVKITQIAKNFARGNFARKAEISSSGEMGALANAINVMGVELQSRMQVILDDKNKLNAIMANMNDAVIVTDLQERIMLINNAAKMMFDLSAVVLNRDCLWEKIRNEKLHNLVKETIKTQTARTSEIEIPAPGKKLLQIHLSPLQVEKNSQGVLLVFHDITELRKLENVRRDFVANVSHELRTPLASIKGYVETLLENDSLRQEDIQEFLRVIMKHSQRLDNLIKDILELSRLDSHDLKTELTLMDVLPCIENISAQYQELCVRKNQTIDLDIPHQIPLIETNEYLFRQLLTNLLDNAVKYTTSGGKIGLKVEPVSTSIRFEISDTGIGIPQEHIPRIFERFYRVDPARSREMGGTGLGLSIVKHIVLLHHGHIQVESTVNAGTTFSITIPLQQARHMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU08</accession>
    <name>A0A0M2UU08_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cytochrome c biogenesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">ccsB_2</name>
        <name evidence="2" type="ORF">BROFUL_02833</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000266">
        <property type="protein sequence ID" value="KKO18476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18476">
        <property type="protein sequence ID" value="KKO18476"/>
        <property type="gene ID" value="BROFUL_02833"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="59"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="96"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="293"/>
            <end position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="319" mass="35424" checksum="825EB66308774F8C" modified="2015-11-11" version="1">MRTIYIIFKSQKLGIITGFTVTALLILGSLIMNYNPRAYEGLSGEDISFFFAHKRPIHLWFYLLFLACILYGVNTFLCTLDSIIRKTRSGVKKITLYGASVVHIGFVITLIAHLIGGLYSTTEPPVSVAEEWTDLGGIEMKVTDLKTSSYPNGMPRKITASVVVRKDGNEFTDTLGYNNPVLLQHGISEILMRDYGWIASGVVLKVDNHPYRLKVSETFTANGKQVCVADLYMPPQYRYPVLKLVTAAGTNPVFLSIGDDNAQEIHGAKVSFEDINSVPGVLVSVKKNPSIPLTFVTIFFFSAGMILVVFRMIYRTVTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU30</accession>
    <name>A0A0M2UU30_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Threonine-phosphate decarboxylase</fullName>
            <ecNumber evidence="5">4.1.1.81</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">L-threonine-O-3-phosphate decarboxylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_02825</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H(+) + O-phospho-L-threonine = (R)-1-aminopropan-2-yl phosphate + CO2</text>
            <dbReference type="Rhea" id="RHEA:11492"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:58563"/>
            <dbReference type="ChEBI" id="CHEBI:58675"/>
            <dbReference type="EC" id="4.1.1.81"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.81" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000265">
        <property type="protein sequence ID" value="KKO18501.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18501">
        <property type="protein sequence ID" value="KKO18501"/>
        <property type="gene ID" value="BROFUL_02825"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3495"/>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048472">
        <property type="term" value="F:threonine-phosphate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005860">
        <property type="entry name" value="CobD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004838">
        <property type="entry name" value="NHTrfase_class1_PyrdxlP-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01140">
        <property type="entry name" value="L_thr_O3P_dcar"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00105">
        <property type="entry name" value="AA_TRANSFER_CLASS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="8" id="KW-0456">Lyase</keyword>
    <keyword evidence="7" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="10">
        <location>
            <begin position="21"/>
            <end position="349"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001790"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00003444"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00029996"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO18501.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="356" mass="40525" checksum="525AA2EB8E6FF8F2" modified="2015-11-11" version="1">MFHGHGGNITHLMNQGNNGILDFSASINPLGYPQKVREVIQENFDDILHYPDIDCAALRKYIARKIGHSEDEIIVGNGSTELFYLIPRALRPAKGIVFQPTFSEFAEALKSTHTEVLNIMLKEEDNFCFTGSACDFYDKKAEIAFFCNPNNPTGQLVEKAVILDMAQQHPHTLFVVDEAFIDFVDEPERYSVINETITTHNLIVVRSLTKFYGFPGIRIGYLAAHADLVKKMMAYKEPWSVNTLAQYAAMTAMEDGEFISRSRRFMFQERSFLFHELSGIHGLSPYEPTANYLFIKIKRDGVTSSWLRGRLLDLGIAIRDCSNFTGLDDTYFRVAVRTREENMRLIAALKKVTDHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU61</accession>
    <name>A0A0M2UU61_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02770</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000263">
        <property type="protein sequence ID" value="KKO18531.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18531">
        <property type="protein sequence ID" value="KKO18531"/>
        <property type="gene ID" value="BROFUL_02770"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18531.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="30" mass="3594" checksum="9986695E0652E072" modified="2015-11-11" version="1" fragment="single">MFTILCMGRFETCPYKTILLIERIFQKAKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU89</accession>
    <name>A0A0M2UU89_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Putative heme protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_03272</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000299">
        <property type="protein sequence ID" value="KKO18049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18049">
        <property type="protein sequence ID" value="KKO18049"/>
        <property type="gene ID" value="BROFUL_03272"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023155">
        <property type="entry name" value="Cyt_c-552/4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036280">
        <property type="entry name" value="Multihaem_cyt_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13435">
        <property type="entry name" value="Cytochrome_C554"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48695">
        <property type="entry name" value="SSF48695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0349">Heme</keyword>
    <keyword evidence="2 3" id="KW-0408">Iron</keyword>
    <keyword evidence="1 3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644030" evidence="4">
        <location>
            <begin position="23"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="5">
        <location>
            <begin position="89"/>
            <end position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="236" mass="26457" checksum="6C65A0A77B9E6D48" modified="2015-11-11" version="1">MFGGRKTLCLISGIVVSVWSLASSLPAISNGADFVGNSGCKCHMGKGCFEGEEYKERLHSNTWEKRLKGTPDAENPDCLKCHATAYGEKIAEVGKKYLPNVQCEACHGAGSEYKKLKENFQGKGKDAFKELLKKDPFEARKVQFDAGLIVAGINGPATVKEQCLTCHWENKDDKNKCPKTDKVMDYKDYFKKDDHRDEDEIDVLIKKLSPEDKKKWAALLPKDEILNTPLKPKKKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUC1</accession>
    <name>A0A0M2UUC1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">HEPN domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02713</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000251">
        <property type="protein sequence ID" value="KKO18596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18596">
        <property type="protein sequence ID" value="KKO18596"/>
        <property type="gene ID" value="BROFUL_02713"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007842">
        <property type="entry name" value="HEPN_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05168">
        <property type="entry name" value="HEPN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00748">
        <property type="entry name" value="HEPN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50910">
        <property type="entry name" value="HEPN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HEPN" evidence="1">
        <location>
            <begin position="13"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="117" mass="13771" checksum="DA0129EE3FB54FE6" modified="2015-11-11" version="1">MENNIRIRAREWFEKADHDFDAVNDILKGSGHPDVAGVLLQQGVEKYLKGYLISKGWKLVKTHDLKQLLDEAVKHNTLFDTYYNLLDMITEYYFEEKYPFGETEVTLEEIKQNLKKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUE6</accession>
    <name>A0A0M2UUE6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNA 3'-terminal phosphate cyclase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01841</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000190">
        <property type="protein sequence ID" value="KKO19462.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19462">
        <property type="protein sequence ID" value="KKO19462"/>
        <property type="gene ID" value="BROFUL_01841"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003963">
        <property type="term" value="F:RNA-3'-phosphate cyclase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.360.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023797">
        <property type="entry name" value="RNA3'_phos_cyclase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000228">
        <property type="entry name" value="RNA3'_term_phos_cyc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017770">
        <property type="entry name" value="RNA3'_term_phos_cyc_type_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036553">
        <property type="entry name" value="RPTC_insert"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11096">
        <property type="entry name" value="PTHR11096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11096:SF0">
        <property type="entry name" value="PTHR11096:SF0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01137">
        <property type="entry name" value="RTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52913">
        <property type="entry name" value="SSF52913"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RTC" evidence="2">
        <location>
            <begin position="44"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00021428"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19462.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="157" mass="17406" checksum="3B2BF82FAD691D55" modified="2015-11-11" version="1">MIQGVSAVSNLERIIAQRQQTQAKLNFLERNIPHEIGITEIPAAGKGTMMFLIGTFEQSQCCYFSLGAPRKRAETVADEACNQFFSFLETKGVIDEYLADQLIIPLALTKVTSHYVTPRITRHLLTNIEIVKLFLPVTVDVVGNLDEEGLVKIACPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUE9</accession>
    <name>A0A0M2UUE9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01806</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000189">
        <property type="protein sequence ID" value="KKO19467.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19467">
        <property type="protein sequence ID" value="KKO19467"/>
        <property type="gene ID" value="BROFUL_01806"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="86"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="116"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="143"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="175"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="224"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="254"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="295"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="321"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="349"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="387"/>
            <end position="404"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19467.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="430" mass="49564" checksum="0E633B4CAB0FAB6E" modified="2015-11-11" version="1">MRLSTTAFILVFISLFSVLLYGNTIGRNFTYDDFGIVVENPFLREWRYLPKVFTKGYFSLSGEMSYRPLVTISYFIDYAIWQGNSIGFHITNVILHTVNTILFYLFLRAVLSNTRIIFLSILFFLTHPVLAETVNVISYRDDLLTATFFLVSFIYFIKSDLLFSGEKGQIIRGAAYYTISLISYLCAVFSKEMAITLPILLIVFTIFPHQKPWSSLAKRLKGIYTGYLALSLFYLIIRFMVFSNSSVKSAYQPGGLWVNTFTMIKILASYIKLSFFPLHLNANYVIPPAVHPWEWASILAITFLISVFVIFAMLYKTRNMFAVWMSWFFITLLPVMNIIPINHIMAERYLYIPVMGFCVAKGILIYRITDRTLSPRAIPLRRIVQRVLVVFMIGGYGFLIIQHNESWGNKLTLRTKTITNSPSSYSIHGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUH4</accession>
    <name>A0A0M2UUH4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetyltransferase (GNAT) family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02060</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19260.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19260">
        <property type="protein sequence ID" value="KKO19260"/>
        <property type="gene ID" value="BROFUL_02060"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19260.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="125" mass="14034" checksum="0F17A24C1FA742A9" modified="2015-11-11" version="1">MRIRRVTEHDSDACYVIESVCYTSDAATREKIQKRIQMFPEGFLVAESHGQIVGMINSGSTNKEDITDEAFKDMVGHVRDGKNIVIFSLAVLPEFQGMGVSKKLLTKFVDISKELKTDVHPKQTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUJ2</accession>
    <name>A0A0M2UUJ2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PINc domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02653</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000242">
        <property type="protein sequence ID" value="KKO18646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18646">
        <property type="protein sequence ID" value="KKO18646"/>
        <property type="gene ID" value="BROFUL_02653"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002716">
        <property type="entry name" value="PIN_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002850">
        <property type="entry name" value="PIN_toxin-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34610">
        <property type="entry name" value="PTHR34610"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13470">
        <property type="entry name" value="PIN_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00670">
        <property type="entry name" value="PINc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00305">
        <property type="entry name" value="TIGR00305"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="127"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="domain" description="PINc" evidence="2">
        <location>
            <begin position="3"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="147" mass="16480" checksum="678E1562BAD51ED7" modified="2015-11-11" version="1">MAVKAVIDTNIWVSSVLNPFGFPARLRKSFEEGAFLAVISEPILEELADVLNRPRIKDKYGITENDIKELLILVEERAESVLLSGDIAICRDKDDNLIIETAIKGQTAFLVTRDDDIKFDKSVSSFLIQYGISVISVTRFLALIYKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUP1</accession>
    <name>A0A0M2UUP1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01534</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000158">
        <property type="protein sequence ID" value="KKO19758.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19758">
        <property type="protein sequence ID" value="KKO19758"/>
        <property type="gene ID" value="BROFUL_01534"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19758.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="337" mass="37474" checksum="EDDE74570F54CE07" modified="2015-11-11" version="1">MPDFDLSNFSEDDKLLLRAKPISNLMDIDAFPFQLFQKSDLGAGEDERSFLDYVCYTDYRINFGDDFISMSIDMLLLEKLEISIVGLDFITFEIGRAGYFPFKISVEIRTESFYLNLSNVELGIKFGRDLLIPIEIGQDGVPLKVDKKFVEINGSSKATISTVGSLLLDKDFNISARGFDSLNLTPCKLRNIPIALTFQNLKLDLSKKDSIQEIIDAGFDESFQGIYVQTLSVYFDGELGDILPPVNASNFIIGTGGVSGSISAVFTPGFDPDTGQFTGDASGTLFGISMGLNKFEMEMLRNNLNGFSLKDGFIFPFSKKKHLTTNENMCQLMCVFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUP2</accession>
    <name>A0A0M2UUP2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Nicotinate-nucleotide diphosphorylase (carboxylating)</fullName>
            <ecNumber evidence="4">2.4.2.19</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Quinolinate phosphoribosyltransferase [decarboxylating]</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BROFUL_03102</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in the catabolism of quinolinic acid (QA).</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cofactor biosynthesis; NAD(+) biosynthesis; nicotinate D-ribonucleotide from quinolinate: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the NadC/ModD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.19" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000286">
        <property type="protein sequence ID" value="KKO18204.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18204">
        <property type="protein sequence ID" value="KKO18204"/>
        <property type="gene ID" value="BROFUL_03102"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3831"/>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00331"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004514">
        <property type="term" value="F:nicotinate-nucleotide diphosphorylase (carboxylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd01572">
        <property type="entry name" value="QPRTase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004393">
        <property type="entry name" value="NadC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027277">
        <property type="entry name" value="NadC/ModD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036068">
        <property type="entry name" value="Nicotinate_pribotase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037128">
        <property type="entry name" value="Quinolinate_PRibosylTase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002638">
        <property type="entry name" value="Quinolinate_PRibosylTrfase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022412">
        <property type="entry name" value="Quinolinate_PRibosylTrfase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32179">
        <property type="entry name" value="PTHR32179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01729">
        <property type="entry name" value="QRPTase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02749">
        <property type="entry name" value="QRPTase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006250">
        <property type="entry name" value="NadC_ModD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51690">
        <property type="entry name" value="SSF51690"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00078">
        <property type="entry name" value="nadC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 9" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="5" id="KW-0662">Pyridine nucleotide biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="QRPTase_N" evidence="12">
        <location>
            <begin position="32"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="QRPTase_C" evidence="11">
        <location>
            <begin position="121"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10">
        <location>
            <begin position="142"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10">
        <location>
            <begin position="270"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10">
        <location>
            <begin position="291"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="109"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="166"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="176"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="218"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="239"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009400"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011944"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00033102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRNR" id="PIRNR006250"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR006250-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF01729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF02749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO18204.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="309" mass="34080" checksum="58E59AE12E4BC132" modified="2015-11-11" version="1">MGSSFEYEQKIDFEPAKIDALLQLAFEEDIFTGDITTENLIPNNLMVEGVFIAKENGIIAGLPVVECFFSKLDKNIFFKQWIREGGVVCKGETIAAIQGSAKTLLAGERIALNFLQRLSGIATLTSRFVERIKPLKTALLDTRKTVPGWRYLEKYAVAAGGGVNHRMGLYDQALIKDNHLDIMKSKLFCDPSSPISIIEKAVSVVRQKINKGVLIEVETRTSEEVESALNADVDIILFDNMSIQQLSDAVRLVKEWKYGEGKQPPLTEASGNITLENVHLVAQTGVDRISVGALTHSAKALDISLEISR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUV8</accession>
    <name>A0A0M2UUV8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphatidylethanolamine N-methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01704</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000176">
        <property type="protein sequence ID" value="KKO19597.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19597">
        <property type="protein sequence ID" value="KKO19597"/>
        <property type="gene ID" value="BROFUL_01704"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2110"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_11" evidence="1">
        <location>
            <begin position="44"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19597.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="207" mass="23745" checksum="ADABE01A3C06D9BE" modified="2015-11-11" version="1">MSEHIKKVYSFYSWIYDAFFGRIFEHGRYVAFHMMDAKANETILEVGVGTGLSLPLYARNVKVVGVDISQEMLDKAERKKQHYRLSNVDLYTMDASSMSFPNDTFDKVIASHVITVVPDPLRTLNEIKRVCKKEGEIFLLNYTGCNNKVIASFEKFISPFRDKMGLGKHVDLDELLRCANLSVLSERRVNFLEMCRLIKCKDTSALP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUW5</accession>
    <name>A0A0M2UUW5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Thioredoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01877</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the thioredoxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000194">
        <property type="protein sequence ID" value="KKO19415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19415">
        <property type="protein sequence ID" value="KKO19415"/>
        <property type="gene ID" value="BROFUL_01877"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2341"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015035">
        <property type="term" value="F:protein-disulfide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005746">
        <property type="entry name" value="Thioredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017937">
        <property type="entry name" value="Thioredoxin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00085">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000077">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01068">
        <property type="entry name" value="thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00194">
        <property type="entry name" value="THIOREDOXIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2 4" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="5">
        <location>
            <begin position="1"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="disulfide bond" description="Redox-active" evidence="4">
        <location>
            <begin position="33"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR000077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000077-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="109" mass="11722" checksum="14319FAA7E9215AC" modified="2015-11-11" version="1">MSGDVAVITDANFEGEVIKSSVPVLVDFWASWCGPCRQLAPIIDELATEYKGKAKVGKLDTEENNNTPAKFGITAIPTLILFKNGQAVNKMVGVKSKKDLKAALDAQLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV00</accession>
    <name>A0A0M2UV00_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Trans-aconitate 2-methyltransferase</fullName>
            <ecNumber evidence="2">2.1.1.144</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">tam</name>
        <name evidence="2" type="ORF">BROFUL_01391</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.144" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000145">
        <property type="protein sequence ID" value="KKO19878.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19878">
        <property type="protein sequence ID" value="KKO19878"/>
        <property type="gene ID" value="BROFUL_01391"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1716"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030798">
        <property type="term" value="F:trans-aconitate 2-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041698">
        <property type="entry name" value="Methyltransf_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13649">
        <property type="entry name" value="Methyltransf_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_25" evidence="1">
        <location>
            <begin position="47"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19878.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="221" mass="25085" checksum="E25AA19B71FABC7D" modified="2015-11-11" version="1">MKRIPEPELMEDEDQVRAYAGADFEDAHSNFIRLFQTTFGLHLRGYVLDLGCGHGDITMRFARAYPGCIVHGIDGSETMIRWGKNILTEAHDIQGRVDLIRGMLPEAIPPHSRYDGVISNSLLHHLPKPRILYPFIHRYAASGAPVFIMDLKRPQTNDEAEALVQAYAAHEPEILKRDFYHSLLAAYTVEEIREQLQGTPLAHLSVKEVSDRHLMIAGYRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV19</accession>
    <name>A0A0M2UV19_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Xylulose-5-phosphate phosphoketolase</fullName>
            <ecNumber evidence="4">4.1.2.9</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">xpkA</name>
        <name evidence="4" type="ORF">BROFUL_01385</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the XFP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.2.9" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000143">
        <property type="protein sequence ID" value="KKO19898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19898">
        <property type="protein sequence ID" value="KKO19898"/>
        <property type="gene ID" value="BROFUL_01385"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1707"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050193">
        <property type="term" value="F:phosphoketolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005593">
        <property type="entry name" value="Xul5P/Fru6P_PKetolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018969">
        <property type="entry name" value="Xul5P/Fru6P_PKetolase_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31273">
        <property type="entry name" value="PTHR31273"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03894">
        <property type="entry name" value="XFP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09363">
        <property type="entry name" value="XFP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52922">
        <property type="entry name" value="SSF52922"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0456">Lyase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="XFP_C" evidence="3">
        <location>
            <begin position="197"/>
            <end position="398"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005623"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF09363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="400" mass="45699" checksum="2D1E36077C2A716E" modified="2015-11-11" version="1">MEYENTKPLGEYLRDVMKNNMTSFRVFGPDETASNRLQAIYEVSKKTWMADMLPEDADGGELARDGRVMEMLSEHTLIGWLEGYLLTGRHGFFHTYEAFAHVIDSMFNQHAKWLDICKNHVPWRASVASENILLSSTVWRQDHNGFSHQDPGFIDLVTNKSPSVTRIYLPPDANTLLAVADHCLRSTDYINVIVADKQKHLQFTTIDEAVIHCAKGLGIWARASTDAGEEPDVVLAACGDVATMEALAAAAILREQEPDLKLRFINVVDLFKLQPVSEHPHGSTEREFDSLFTTDKPIIFNFHGYPWLIHKLSYRFKGHDNLHVRGYKEKGNINTPLELAMLNETSRFHLVIDIIDRVPKLRTKAAHVKEQMKNAIIDNMRYAHEQGTDRPEITNWTWPY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVK9</accession>
    <name>A0A0M2UVK9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Amidophosphoribosyltransferase</fullName>
            <shortName evidence="5">ATase</shortName>
            <ecNumber evidence="5">2.4.2.14</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Glutamine phosphoribosylpyrophosphate amidotransferase</fullName>
            <shortName evidence="5">GPATase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">purF</name>
        <name evidence="10" type="ORF">BROFUL_01431</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5 6">
            <text>5-phospho-beta-D-ribosylamine + diphosphate + L-glutamate = 5-phospho-alpha-D-ribose 1-diphosphate + H2O + L-glutamine</text>
            <dbReference type="Rhea" id="RHEA:14905"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58681"/>
            <dbReference type="EC" id="2.4.2.14"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5 8">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="5 8">Binds 1 [4Fe-4S] cluster per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 5 6">Purine metabolism; IMP biosynthesis via de novo pathway; N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-alpha-D-ribose 1-diphosphate: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 5 6">In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.14" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000146">
        <property type="protein sequence ID" value="KKO19872.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19872">
        <property type="protein sequence ID" value="KKO19872"/>
        <property type="gene ID" value="BROFUL_01431"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1763"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00124"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004044">
        <property type="term" value="F:amidophosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009113">
        <property type="term" value="P:purine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00715">
        <property type="entry name" value="GPATase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01931">
        <property type="entry name" value="PurF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017932">
        <property type="entry name" value="GATase_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005854">
        <property type="entry name" value="PurF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035584">
        <property type="entry name" value="PurF_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13537">
        <property type="entry name" value="GATase_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000485">
        <property type="entry name" value="Amd_phspho_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01134">
        <property type="entry name" value="purF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51278">
        <property type="entry name" value="GATASE_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="5 6 10" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="5 8" id="KW-0408">Iron</keyword>
    <keyword evidence="5 8" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 5 6" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glutamine amidotransferase type-2" evidence="9">
        <location>
            <begin position="8"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="5 7">
        <location>
            <position position="8"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5 8">
        <location>
            <position position="243"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 8">
        <location>
            <position position="389"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 8">
        <location>
            <position position="440"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 8">
        <location>
            <position position="443"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR000485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000485-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000485-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19872.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="471" mass="52431" checksum="EEBC3A8FB0AB96F4" modified="2015-11-11" version="1">MSEAREYCGLFGVYGCEDAAERVYYGLYSLQHRGEESAGIASTDGKDIVSHKGMGLVNDVIKPQTLKSLKNPIAIGHVRYSTIGSSNLGNAQPLVVDYYKGKVAVAHNGQLTNAKKLREEFEANGSIFHTTSDTEVIVHLMAKPLHMMQKNLSLLLQQLRGSFSLLFLTPDEMVGVRDPHGFRPLALGRLNTGYVLASETCAMDQVGAEYLRDINPGEAVYINKEGIRSEYYCSPKHIKPAFCIFELVYFSRPDSKIYGESVHLFRKKLGAKLAAESPVDADVVISVPEGGNSAAIGYSHASGIPFDRGFIRNHYVGRTFILPEQDRRHRVVELKLNALKETVEGKRVIVIDDSIVRGTTSKSRFSLLRKAGAKEIHVRISCPPHRYPCYYGIDFQQKGELIAASHTVEEIRQFLHVESLSYLSVNGMMSCTTQPRQHFCNACFTSDYPTSIDEETKKLTEKKPVSAEKNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVL2</accession>
    <name>A0A0M2UVL2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01390</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000145">
        <property type="protein sequence ID" value="KKO19877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19877">
        <property type="protein sequence ID" value="KKO19877"/>
        <property type="gene ID" value="BROFUL_01390"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="66"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="114" mass="12748" checksum="62701FFFDB23322D" modified="2015-11-11" version="1">MKTIAQNEERRQPKIKTEMRGKGLTVRAGLLPVLLSWGSCYSDREYKRQYVRSGGANARYQMVGGVQMVVVGLIAGATSMVQVVKVWSDEVLMKMAGWKEILVDSTIGRIMQLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVR1</accession>
    <name>A0A0M2UVR1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ABC transporter substrate binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01633</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000170">
        <property type="protein sequence ID" value="KKO19655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19655">
        <property type="protein sequence ID" value="KKO19655"/>
        <property type="gene ID" value="BROFUL_01633"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015914">
        <property type="term" value="P:phospholipid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030970">
        <property type="entry name" value="ABC_MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04430">
        <property type="entry name" value="OM_asym_MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="38"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="148" mass="16265" checksum="7591399DB34C5D76" modified="2015-11-11" version="1">MKKFDTEIVVGIFVFIGVLCLVFISVKLGKINLIGGHYYPVKAVFSTIKGLKKNTDVEISGVSVGTVDDIKLIDYEAVVSLRIRDDIKLQDDSIASIRTKGLLGEKYVEITPGGSDRLLQPGDTLHETEPPIDLEKLIGNFVFGKVKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVY8</accession>
    <name>A0A0M2UVY8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Single-stranded-DNA-specific exonuclease RecJ</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_01078</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the RecJ family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20228">
        <property type="protein sequence ID" value="KKO20228"/>
        <property type="gene ID" value="BROFUL_01078"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1343"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008409">
        <property type="term" value="F:5'-3' exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001667">
        <property type="entry name" value="DDH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038763">
        <property type="entry name" value="DHH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003156">
        <property type="entry name" value="DHHA1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004610">
        <property type="entry name" value="RecJ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041122">
        <property type="entry name" value="RecJ_OB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01368">
        <property type="entry name" value="DHH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02272">
        <property type="entry name" value="DHHA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17768">
        <property type="entry name" value="RecJ_OB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64182">
        <property type="entry name" value="SSF64182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00644">
        <property type="entry name" value="recJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DHH" evidence="6">
        <location>
            <begin position="79"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="domain" description="DHHA1" evidence="7">
        <location>
            <begin position="339"/>
            <end position="446"/>
        </location>
    </feature>
    <feature type="domain" description="RecJ_OB" evidence="8">
        <location>
            <begin position="463"/>
            <end position="571"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00019841"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF17768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="577" mass="63361" checksum="EF06589517356479" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW23</accession>
    <name>A0A0M2UW23_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Thiamin biosynthesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_01246</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000135">
        <property type="protein sequence ID" value="KKO20047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20047">
        <property type="protein sequence ID" value="KKO20047"/>
        <property type="gene ID" value="BROFUL_01246"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1543"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038521">
        <property type="entry name" value="ThiC/Bza_core_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002817">
        <property type="entry name" value="ThiC/BzaA/B"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30557">
        <property type="entry name" value="PTHR30557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01964">
        <property type="entry name" value="ThiC_Rad_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00407">
        <property type="entry name" value="phosphomethylpyrimidine_syntha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00190">
        <property type="entry name" value="thiC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="8" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="433" mass="47106" checksum="C03412AC46302ACA" modified="2015-11-11" version="1">MIREMSMKKMTQLQLARQNIITREMKQVATDECLEPEYIRERIAEGKIVIPANHKRTATRVCGIGTGLKTKVNANIGTSADYADIANELEKLQALEEAGADAVMDLSTGGDLRAIRKKIVGSTSIAVGSVPIYEAAVKAVQQKHSIVDMTATDMLEAVRLHCEDGVDFITVHCGATRGVLKHLKENKRICGVVSRGGTFLVEWMIHNGRENPLYEHYDEILAIAQEYDVTLSLGDAMRPGALADAFDRAQVYELNVLAELAQRALDAGVQVMVEGPGHVPLSQVTAQVQLQKELCKGVPFYVLGPIVTDVAPGYDHITSAIGGAIAAAAGADFLCYVTPTEHLSLPGPADVRSGVMAARIAAHAADIAKGIKSAWEWDKKMSQFRRKRNWEGQFSTCIDPAVARSIRAKGKPQNEEVCSMCAEYCVFKLSDKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW40</accession>
    <name>A0A0M2UW40_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01517</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000155">
        <property type="protein sequence ID" value="KKO19790.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19790">
        <property type="protein sequence ID" value="KKO19790"/>
        <property type="gene ID" value="BROFUL_01517"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="31"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19790.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="50" mass="5911" checksum="F70CB64F5C1290BE" modified="2015-11-11" version="1">MWDNLCGCGMDIMAVYNYDKARLLRFTRNDRRKNDFPPAMTGEREVSHSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW65</accession>
    <name>A0A0M2UW65_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00940</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000116">
        <property type="protein sequence ID" value="KKO20308.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20308">
        <property type="protein sequence ID" value="KKO20308"/>
        <property type="gene ID" value="BROFUL_00940"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20308.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="86" mass="9945" checksum="2A0577D92337B361" modified="2015-11-11" version="1">MEKKRRLRDEYRFPGFGSKAEIKGIFGDSKARVIQLKRTQKNGMRVLWKNSWELLRQEGALDTGFILWRCKDLPGSRGAASIMSEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW75</accession>
    <name>A0A0M2UW75_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01172</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000126">
        <property type="protein sequence ID" value="KKO20097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20097">
        <property type="protein sequence ID" value="KKO20097"/>
        <property type="gene ID" value="BROFUL_01172"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="56" mass="6328" checksum="91205B81D8116178" modified="2015-11-11" version="1">MDEKKKIVVVARTEGIEIVVEGEKDTDDYELLLTKDQAMELAMNILNTLYKTGAKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW91</accession>
    <name>A0A0M2UW91_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">FGE-sulfatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01447</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000147">
        <property type="protein sequence ID" value="KKO19845.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19845">
        <property type="protein sequence ID" value="KKO19845"/>
        <property type="gene ID" value="BROFUL_01447"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016187">
        <property type="entry name" value="CTDL_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005532">
        <property type="entry name" value="SUMF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042095">
        <property type="entry name" value="SUMF_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03781">
        <property type="entry name" value="FGE-sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56436">
        <property type="entry name" value="SSF56436"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FGE-sulfatase" evidence="1">
        <location>
            <begin position="11"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19845.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="119" mass="13653" checksum="D0C733F5164D4D25" modified="2015-11-11" version="1">MFFVSEPGGYELVKIPGGVFLMGTPEQESGRFKYEWLLHEIQAPDFYLGRYPATNEEYGRFLKDNPKIEEPRYWAERKFNQPRQPVVGGKLGRCKTLCRMGRPAPAGRGRPGICLPCRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWA2</accession>
    <name>A0A0M2UWA2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">UvrABC system protein C</fullName>
            <shortName evidence="6">Protein UvrC</shortName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Excinuclease ABC subunit C</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">uvrC</name>
        <name evidence="10" type="ORF">BROFUL_02046</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Interacts with UvrB in an incision complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the UvrC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19246.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19246">
        <property type="protein sequence ID" value="KKO19246"/>
        <property type="gene ID" value="BROFUL_02046"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2551"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009380">
        <property type="term" value="C:excinuclease repair complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009381">
        <property type="term" value="F:excinuclease ABC activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006289">
        <property type="term" value="P:nucleotide-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00203">
        <property type="entry name" value="UvrC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000305">
        <property type="entry name" value="GIY-YIG_endonuc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035901">
        <property type="entry name" value="GIY-YIG_endonuc_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010994">
        <property type="entry name" value="RuvA_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001943">
        <property type="entry name" value="UVR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036876">
        <property type="entry name" value="UVR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004791">
        <property type="entry name" value="UvrC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001162">
        <property type="entry name" value="UvrC_RNase_H_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038476">
        <property type="entry name" value="UvrC_RNase_H_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01541">
        <property type="entry name" value="GIY-YIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02151">
        <property type="entry name" value="UVR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08459">
        <property type="entry name" value="UvrC_HhH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00465">
        <property type="entry name" value="GIYc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46600">
        <property type="entry name" value="SSF46600"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47781">
        <property type="entry name" value="SSF47781"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82771">
        <property type="entry name" value="SSF82771"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00194">
        <property type="entry name" value="uvrC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50164">
        <property type="entry name" value="GIY_YIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50151">
        <property type="entry name" value="UVR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50165">
        <property type="entry name" value="UVRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 6" id="KW-0227">DNA damage</keyword>
    <keyword evidence="3 6" id="KW-0228">DNA excision</keyword>
    <keyword evidence="5 6" id="KW-0234">DNA repair</keyword>
    <keyword evidence="4 6" id="KW-0267">Excision nuclease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0742">SOS response</keyword>
    <feature type="domain" description="GIY-YIG" evidence="8">
        <location>
            <begin position="12"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="domain" description="UVR" evidence="7">
        <location>
            <begin position="201"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="domain" description="UVRC" evidence="9">
        <location>
            <begin position="252"/>
            <end position="474"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19246.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="619" mass="71415" checksum="61121394F0B7687B" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWF5</accession>
    <name>A0A0M2UWF5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putative transporter protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_01360</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000141">
        <property type="protein sequence ID" value="KKO19910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19910">
        <property type="protein sequence ID" value="KKO19910"/>
        <property type="gene ID" value="BROFUL_01360"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1680"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="20"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="64"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="87"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="123"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="152"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="1"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="184" mass="19951" checksum="8C9561552F620FF9" modified="2015-11-11" version="1" fragment="single">TFFTSFSLLYRALGGFRSNTIYAVTVAGLTAFHAGILWGAQVVTTILAKPVMGKISDRCGRKPIIFFGMWICAVPFASIPFTQNFYLLLFLASVFGVGEAFVTSSSAAMVAEFCEAQHYGAAMGTFGSIFDIGHASGPILAGLLLAHLSYQYSFLIIAIILIFASFIFMLTVREEKVAVLKQET</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWG1</accession>
    <name>A0A0M2UWG1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter permease component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01365</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000141">
        <property type="protein sequence ID" value="KKO19915.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19915">
        <property type="protein sequence ID" value="KKO19915"/>
        <property type="gene ID" value="BROFUL_01365"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19915.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="43" mass="4684" checksum="3EBF7E5EEAF4AFFB" modified="2015-11-11" version="1">MANSPEDIVSALSVIIVVMTLLPVVFFLAIFKHLVRDPLSSLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWL6</accession>
    <name>A0A0M2UWL6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01933</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000197">
        <property type="protein sequence ID" value="KKO19361.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19361">
        <property type="protein sequence ID" value="KKO19361"/>
        <property type="gene ID" value="BROFUL_01933"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd16377">
        <property type="entry name" value="23S_rRNA_IVP_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1440.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012657">
        <property type="entry name" value="23S_rRNA-intervening_sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036583">
        <property type="entry name" value="23S_rRNA_IVS_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38471">
        <property type="entry name" value="PTHR38471"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05635">
        <property type="entry name" value="23S_rRNA_IVP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158446">
        <property type="entry name" value="SSF158446"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02436">
        <property type="entry name" value="TIGR02436"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19361.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="124" mass="14717" checksum="00375CF38B09317D" modified="2015-11-11" version="1">MPQSYKDLEIYLLAKDLAVKVHKMTLEDLPKFEMYEEGSQIRRSSKSIVSNIAEGFGRRRYKNEFILYLTYASASCDETKVHLEMLNETRSIKKDLFEEMYPGYEELFAKLFNFREAVIRSHRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWM5</accession>
    <name>A0A0M2UWM5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01898</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19371.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19371">
        <property type="protein sequence ID" value="KKO19371"/>
        <property type="gene ID" value="BROFUL_01898"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025714">
        <property type="entry name" value="Methyltranfer_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13679">
        <property type="entry name" value="Methyltransf_32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltranfer_dom" evidence="1">
        <location>
            <begin position="43"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19371.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="286" mass="32646" checksum="5E1D3C1F2AB92CFE" modified="2015-11-11" version="1">MVHSVTSCVGSKKGIAEELRSSKELLKVLALDIEKSEDGRDFKKFNEVVGFCEQILRIVEAIPEKKEIVFLDCSCGKSYLSFALNYILSKQFSRETFFYGVDINPDLIERCSRIKDSLGFKNMQFVHARIIEALPEKPVDMVIALHACDTATDEAIAKGIKLRAKYIIVVPCCENQIRGRLKNGHPLVDLTEFGLLRYRFADILTAALRSKFLMGSGYCVKLVEIAPPKCTPKNLMIVARRKKGNKSFSMDGYNKLDEMFHTEFILKDYFRESDMCYEDNVHHEKC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWQ6</accession>
    <name>A0A0M2UWQ6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01012</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000119">
        <property type="protein sequence ID" value="KKO20267.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20267">
        <property type="protein sequence ID" value="KKO20267"/>
        <property type="gene ID" value="BROFUL_01012"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="30"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="37"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20267.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="67" mass="7864" checksum="0B2E40FDC2BB3AE1" modified="2015-11-11" version="1">MGNNKYVGTFKFKKETGIPVIKMVVTQKKHNAAQSQPKKFNHKERKALHKDHKENITEKRSLYEVIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWU0</accession>
    <name>A0A0M2UWU0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF58 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01239</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000135">
        <property type="protein sequence ID" value="KKO20040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20040">
        <property type="protein sequence ID" value="KKO20040"/>
        <property type="gene ID" value="BROFUL_01239"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002881">
        <property type="entry name" value="DUF58"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01882">
        <property type="entry name" value="DUF58"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF58" evidence="1">
        <location>
            <begin position="30"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="186" mass="21139" checksum="F7111A5F35A2238A" modified="2015-11-11" version="1">MKKRIRLTLQRLIGNLFAGSFSSYMNALHGLELDELRQYQPGDDCRAIDWKATAKTGRLHVRMKFVDKRVTIIFLVDKSRSEKFGSFCHTKEDVQSAILFTLVHAASEAGNEIGFLTFTDRVENFIQPQAGEKEAFIRAKSIVPATPAGRHTDFHKAFTFLHEKIHQPASCLSCRISWRPTITSNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWV7</accession>
    <name>A0A0M2UWV7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01231</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000134">
        <property type="protein sequence ID" value="KKO20055.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20055">
        <property type="protein sequence ID" value="KKO20055"/>
        <property type="gene ID" value="BROFUL_01231"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.450.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038573">
        <property type="entry name" value="BrnT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007460">
        <property type="entry name" value="BrnT_toxin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04365">
        <property type="entry name" value="BrnT_toxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20055.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="193" mass="21950" checksum="CDF2A85D0879E00D" modified="2015-11-11" version="1">MELNFEWDEEKAKAKFRKHKVSFGEATTVFIDPLSITICDPNHSIDEQRYIDIGSSENGRVLVVVYTERGFNIRIISCRKATASERKLYRNGNFMKKGNDKIVPAEGNNMRTEYDFTGGVRGKHYKTMQNGYTVSIHKADGTTVVKEVMPKKGAVIIEPDIRAYFPDSESVNRALRCLIPLLSKKRKAKTKKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWY1</accession>
    <name>A0A0M2UWY1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Ribosome-binding factor A</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rbfA</name>
        <name evidence="2" type="ORF">BROFUL_00914</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Monomer. Binds 30S ribosomal subunits, but not 50S ribosomal subunits or 70S ribosomes.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the RbfA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000110">
        <property type="protein sequence ID" value="KKO20357.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20357">
        <property type="protein sequence ID" value="KKO20357"/>
        <property type="gene ID" value="BROFUL_00914"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1151"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030490">
        <property type="term" value="P:maturation of SSU-rRNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00003">
        <property type="entry name" value="RbfA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000238">
        <property type="entry name" value="RbfA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023799">
        <property type="entry name" value="RbfA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020053">
        <property type="entry name" value="Ribosome-bd_factorA_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33515">
        <property type="entry name" value="PTHR33515"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02033">
        <property type="entry name" value="RBFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89919">
        <property type="entry name" value="SSF89919"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00082">
        <property type="entry name" value="rbfA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01319">
        <property type="entry name" value="RBFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0690">Ribosome biogenesis</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20357.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="125" mass="14217" checksum="687A9469DF9BB846" modified="2015-11-11" version="1">MSSIRNKRLSEFIKQEVSKIILYELKDPRISFVTVTQVEITSDLKNAKVYISVLGDDIARKKTLQAVEHAKGFIQAKVGSQLQIRYTPVLTFCLDESIQKSLHISKLIDDAMKDSDKTIKGEMEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX31</accession>
    <name>A0A0M2UX31_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Type I restriction enzyme EcoKI subunit R</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00654</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000087">
        <property type="protein sequence ID" value="KKO20618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20618">
        <property type="protein sequence ID" value="KKO20618"/>
        <property type="gene ID" value="BROFUL_00654"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.826"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="98" mass="11131" checksum="A0150335F402AA21" modified="2015-11-11" version="1">MINQTPEQIARDLIDKQLTACGWLIQKKNQVNLHAGIGVAVREYLTDAGVADYVLFVDEKPVGVIEAKREEEGHRLTIHEIQYMKSNPKDMPRQNSNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX34</accession>
    <name>A0A0M2UX34_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02235</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19054.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19054">
        <property type="protein sequence ID" value="KKO19054"/>
        <property type="gene ID" value="BROFUL_02235"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19054.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="53" mass="6405" checksum="34CD0B2AB10DFFA1" modified="2015-11-11" version="1">MFLENPSGAFLNRHHLFMVINCSCKSSREERKMRILCPAPEIRFEFDIRIKYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX38</accession>
    <name>A0A0M2UX38_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Flavin prenyltransferase UbiX</fullName>
            <ecNumber evidence="5">2.5.1.129</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">ubiX</name>
        <name evidence="7" type="ORF">BROFUL_01742</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>dimethylallyl phosphate + FMNH2 = phosphate + prenyl-FMNH2</text>
            <dbReference type="Rhea" id="RHEA:37743"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57618"/>
            <dbReference type="ChEBI" id="CHEBI:87467"/>
            <dbReference type="ChEBI" id="CHEBI:88052"/>
            <dbReference type="EC" id="2.5.1.129"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the UbiX/PAD1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.129" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000181">
        <property type="protein sequence ID" value="KKO19541.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19541">
        <property type="protein sequence ID" value="KKO19541"/>
        <property type="gene ID" value="BROFUL_01742"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2158"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106141">
        <property type="term" value="F:flavin prenyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1950">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01984">
        <property type="entry name" value="ubiX_pad"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036551">
        <property type="entry name" value="Flavin_trans-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003382">
        <property type="entry name" value="Flavoprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004507">
        <property type="entry name" value="UbiX-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43374">
        <property type="entry name" value="PTHR43374"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02441">
        <property type="entry name" value="Flavoprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52507">
        <property type="entry name" value="SSF52507"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00421">
        <property type="entry name" value="ubiX_pad"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3 5" id="KW-0288">FMN</keyword>
    <keyword evidence="7" id="KW-0456">Lyase</keyword>
    <keyword evidence="1 5" id="KW-0637">Prenyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Flavoprotein" evidence="6">
        <location>
            <begin position="9"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="16"/>
            <end position="18"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="42"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="103"/>
            <end position="106"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="138"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="168"/>
        </location>
        <ligand>
            <name>dimethylallyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:88052"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="184"/>
        </location>
        <ligand>
            <name>dimethylallyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:88052"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022602"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19541.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="213" mass="23289" checksum="A2396F1DF021DB24" modified="2015-11-11" version="1">MFQEDRVENIVVGITGASGALYAQHLLQALCKLGYHIHLALSDAGALVMKHELGIDFPGAYPHFTSFFDCPADHVTVYHNADMSATIASGRYPIKAMVIVPCSMNTLCSIAHGIANNLIQRAASISIKEGRKLVVVPRETPLSSIHLEAMLKLSSTGVCILPAMPGFYHHPKTIDDQVNFVVAKILDVLGIPHTLMPEWHGDDFVHVLMQQEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXA0</accession>
    <name>A0A0M2UXA0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00769</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000098">
        <property type="protein sequence ID" value="KKO20502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20502">
        <property type="protein sequence ID" value="KKO20502"/>
        <property type="gene ID" value="BROFUL_00769"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.975"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="566"/>
            <end position="587"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="4"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20502.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="747" mass="82037" checksum="6251F3BF7BC88AF2" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXA8</accession>
    <name>A0A0M2UXA8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="12">RNA polymerase sigma-54 factor RpoN</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">BROFUL_01050</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-54 factor family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20200.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20200">
        <property type="protein sequence ID" value="KKO20200"/>
        <property type="gene ID" value="BROFUL_01050"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1312"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001216">
        <property type="term" value="F:DNA-binding transcription activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000394">
        <property type="entry name" value="RNA_pol_sigma_54"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007046">
        <property type="entry name" value="RNA_pol_sigma_54_core-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007634">
        <property type="entry name" value="RNA_pol_sigma_54_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038709">
        <property type="entry name" value="RpoN_core-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32248">
        <property type="entry name" value="PTHR32248"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00309">
        <property type="entry name" value="Sigma54_AID"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04963">
        <property type="entry name" value="Sigma54_CBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04552">
        <property type="entry name" value="Sigma54_DBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000774">
        <property type="entry name" value="RpoN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00045">
        <property type="entry name" value="SIGMA54FCT"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02395">
        <property type="entry name" value="rpoN_sigma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00718">
        <property type="entry name" value="SIGMA54_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0731">Sigma factor</keyword>
    <keyword evidence="8" id="KW-0804">Transcription</keyword>
    <keyword evidence="5" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Sigma54_CBD" evidence="11">
        <location>
            <begin position="115"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma54_DBD" evidence="10">
        <location>
            <begin position="320"/>
            <end position="477"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="57"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="97"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008798"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF04552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF04963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO20200.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="479" mass="55014" checksum="9239107253E0C6EF" modified="2015-11-11" version="1">MKMQSSLLPQLQQKLKLSPQIIQSIEILQLPLMALVEHIQQELVDNPVLEEVVDEKKDENLKEAADAAQTTTEDEKGDEIDKLGEFTEDWREFYSQTTVRRNTGSEERDQKQEALENTAAKPMSLHDYLMGQLSLIDVPNNLTEACENIIYSIDKSGYLASPLEEILQSLEKPLLLEDIKEALRMVQALEPPGVGARNLQECLMLQLDKRDPNYQLTKELLLNHLESIEMKKYPVIAKKTGYSLDVIKRQVDFIRTLNPKPGSLFCDETIPYVVPEVKVEYIDGKYEVFLIDNTNLPHLHISSFYKKFLNESGTDTSTRQYIQKKIESAKWLIDAIEQRRSTLYKVACKIVELQKDFLDEGIHRLRTLKMQDVADVVKVHVSTVSRAIAHKYIQTPQGIFEIKFFFTGGFQNVDGSMESWEAIRQKLAEIVAKENKANPLSDEEVAEKLHASGIAIARRTVTKYRRIMKIPSSRQRKEY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXD8</accession>
    <name>A0A0M2UXD8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Valine--tRNA ligase</fullName>
            <ecNumber evidence="7">6.1.1.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Valyl-tRNA synthetase</fullName>
            <shortName evidence="7">ValRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">valS</name>
        <name evidence="11" type="ORF">BROFUL_00530</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>ATP + L-valine + tRNA(Val) = AMP + diphosphate + L-valyl-tRNA(Val)</text>
            <dbReference type="Rhea" id="RHEA:10704"/>
            <dbReference type="Rhea" id="RHEA-COMP:9672"/>
            <dbReference type="Rhea" id="RHEA-COMP:9708"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57762"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78537"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.9"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="7">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="7">The C-terminal coiled-coil domain is crucial for aminoacylation activity.</text>
    </comment>
    <comment type="domain">
        <text evidence="7">ValRS has two distinct active sites: one for aminoacylation and one for editing. The misactivated threonine is translocated from the active site to the editing site.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.9" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000073">
        <property type="protein sequence ID" value="KKO20748.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20748">
        <property type="protein sequence ID" value="KKO20748"/>
        <property type="gene ID" value="BROFUL_00530"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.664"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA editing activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004832">
        <property type="term" value="F:valine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006438">
        <property type="term" value="P:valyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07962">
        <property type="entry name" value="Anticodon_Ia_Val"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.740.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02004">
        <property type="entry name" value="Val_tRNA_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002300">
        <property type="entry name" value="aa-tRNA-synth_Ia"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033705">
        <property type="entry name" value="Anticodon_Ia_Val"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013155">
        <property type="entry name" value="M/V/L/I-tRNA-synth_anticd-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010978">
        <property type="entry name" value="tRNA-bd_arm"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037118">
        <property type="entry name" value="Val-tRNA_synth_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019499">
        <property type="entry name" value="Val-tRNA_synth_tRNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009008">
        <property type="entry name" value="Val/Leu/Ile-tRNA-synth_edit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002303">
        <property type="entry name" value="Valyl-tRNA_ligase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11946">
        <property type="entry name" value="PTHR11946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08264">
        <property type="entry name" value="Anticodon_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00133">
        <property type="entry name" value="tRNA-synt_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10458">
        <property type="entry name" value="Val_tRNA-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00986">
        <property type="entry name" value="TRNASYNTHVAL"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46589">
        <property type="entry name" value="SSF46589"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="SSF47323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50677">
        <property type="entry name" value="SSF50677"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00422">
        <property type="entry name" value="valS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="4 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 7" id="KW-0436">Ligase</keyword>
    <keyword evidence="3 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 7" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="tRNA-synt_1" evidence="8">
        <location>
            <begin position="25"/>
            <end position="548"/>
        </location>
    </feature>
    <feature type="domain" description="Anticodon_1" evidence="9">
        <location>
            <begin position="593"/>
            <end position="755"/>
        </location>
    </feature>
    <feature type="domain" description="Val_tRNA-synt_C" evidence="10">
        <location>
            <begin position="815"/>
            <end position="877"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="7">
        <location>
            <begin position="509"/>
            <end position="513"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="512"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF08264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF10458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO20748.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="877" mass="101808" checksum="28E74772A25FECD7" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXE0</accession>
    <name>A0A0M2UXE0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Peptidase S55 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01086</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20235">
        <property type="protein sequence ID" value="KKO20235"/>
        <property type="gene ID" value="BROFUL_01086"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008763">
        <property type="entry name" value="Peptidase_S55"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05580">
        <property type="entry name" value="Peptidase_S55"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51494">
        <property type="entry name" value="SPOIVB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase S55" evidence="1">
        <location>
            <begin position="1"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="605" mass="66620" checksum="09AA0EDD782848E4" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXP8</accession>
    <name>A0A0M2UXP8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00924</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000111">
        <property type="protein sequence ID" value="KKO20350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20350">
        <property type="protein sequence ID" value="KKO20350"/>
        <property type="gene ID" value="BROFUL_00924"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1164"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002514">
        <property type="entry name" value="Transposase_8"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01527">
        <property type="entry name" value="HTH_Tnp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="96"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="99"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="164" mass="18391" checksum="1026EFE546734B00" modified="2015-11-11" version="1" fragment="single">TMKNRSTISLKTNNTPGETEGARRATGVSPGGAIQSDHFPDPEVTEKAVRRKFTAKYKLRILQEAEVCATQGQMGALLRREGLYSSNLTTWRRQQKKGALETLSPKHRGPKAKNITPSDRRIAELEKENCQLKEKLKQAETIIDVQKKLSEILRIPLDPTGEKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXT1</accession>
    <name>A0A0M2UXT1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Flagellar protein FliS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_00609</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytosol</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the FliS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000085">
        <property type="protein sequence ID" value="KKO20662.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20662">
        <property type="protein sequence ID" value="KKO20662"/>
        <property type="gene ID" value="BROFUL_00609"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044780">
        <property type="term" value="P:bacterial-type flagellum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003713">
        <property type="entry name" value="FliS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036584">
        <property type="entry name" value="FliS_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02561">
        <property type="entry name" value="FliS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101116">
        <property type="entry name" value="SSF101116"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1005">Bacterial flagellum biogenesis</keyword>
    <keyword evidence="6" id="KW-0966">Cell projection</keyword>
    <keyword evidence="5" id="KW-0143">Chaperone</keyword>
    <keyword evidence="6" id="KW-0969">Cilium</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0282">Flagellum</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20662.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="113" mass="12993" checksum="ACAA46CF4E1DDF7B" modified="2015-11-11" version="1">MLAAKKMSNVYLEQEIMTLNPLQLLIKAYDAGIIACNRKDEVKASAVLSELIDSLNFDYADISNSLFRLYEYCMREVKDGNFEVTLKILKELRETWIQAQENIQAEIPQTSNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXT9</accession>
    <name>A0A0M2UXT9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">CRISPR-associated protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_01998</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the N-terminal section; belongs to the CRISPR-associated nuclease Cas3-HD family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">In the central section; belongs to the CRISPR-associated helicase Cas3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000202">
        <property type="protein sequence ID" value="KKO19284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19284">
        <property type="protein sequence ID" value="KKO19284"/>
        <property type="gene ID" value="BROFUL_01998"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2489"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3210.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035011">
        <property type="entry name" value="Cas3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006483">
        <property type="entry name" value="CRISPR-assoc_Cas3_HD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038257">
        <property type="entry name" value="CRISPR-assoc_Cas3_HD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006474">
        <property type="entry name" value="Helicase_Cas3_CRISPR-ass_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47959:SF5">
        <property type="entry name" value="PTHR47959:SF5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18019">
        <property type="entry name" value="HD_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01587">
        <property type="entry name" value="cas3_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01596">
        <property type="entry name" value="cas3_HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51643">
        <property type="entry name" value="HD_CAS3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0347">Helicase</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HD Cas3-type" evidence="10">
        <location>
            <begin position="7"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase ATP-binding" evidence="9">
        <location>
            <begin position="254"/>
            <end position="447"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO19284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="773" mass="88709" checksum="45C9641F388DB063" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXV8</accession>
    <name>A0A0M2UXV8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">50S ribosomal protein L32</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">l32</name>
        <name evidence="4" type="synonym">rpmF</name>
        <name evidence="6" type="ORF">BROFUL_01964</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the bacterial ribosomal protein bL32 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19304">
        <property type="protein sequence ID" value="KKO19304"/>
        <property type="gene ID" value="BROFUL_01964"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00340">
        <property type="entry name" value="Ribosomal_L32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002677">
        <property type="entry name" value="Ribosomal_L32p"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011332">
        <property type="entry name" value="Ribosomal_zn-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01783">
        <property type="entry name" value="Ribosomal_L32p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57829">
        <property type="entry name" value="SSF57829"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01031">
        <property type="entry name" value="rpmF_bact"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 6" id="KW-0689">Ribosomal protein</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="5">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00340"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="75" mass="8633" checksum="5FEA396E6F437847" modified="2015-11-11" version="1">MPNPKRRFSNSRTRKRRTHDKLTPPVIPLAENIEKGAGVRSKRYICSHCKQVNQPHTVCHNCGYYRGKQVISVGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXZ3</accession>
    <name>A0A0M2UXZ3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Multi drug resistance ABC-transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">oleB</name>
        <name evidence="1" type="ORF">BROFUL_00298</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000035">
        <property type="protein sequence ID" value="KKO20963.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20963">
        <property type="protein sequence ID" value="KKO20963"/>
        <property type="gene ID" value="BROFUL_00298"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.361"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045900">
        <property type="term" value="P:negative regulation of translational elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022374">
        <property type="entry name" value="EttA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43858">
        <property type="entry name" value="PTHR43858"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20963.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="99" mass="11535" checksum="FB4FD45DD5F5FD0C" modified="2015-11-11" version="1">MLKEGANLLLLDEPTNDLDVNTMRALEDALENFSGCVLVITHDRWFLDRIATHILAFEGDSKVFWFEGNYSDYEADRKRRLGVAADQPHRIKYRHLTRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY32</accession>
    <name>A0A0M2UY32_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Alanine racemase</fullName>
            <ecNumber evidence="3">5.1.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_00288</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>L-alanine = D-alanine</text>
            <dbReference type="Rhea" id="RHEA:20249"/>
            <dbReference type="ChEBI" id="CHEBI:57416"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="EC" id="5.1.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 3 4">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the alanine racemase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.1.1.1" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000033">
        <property type="protein sequence ID" value="KKO20988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20988">
        <property type="protein sequence ID" value="KKO20988"/>
        <property type="gene ID" value="BROFUL_00288"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.350"/>
    <dbReference type="UniPathway" id="UPA00042">
        <property type="reaction ID" value="UER00497"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008784">
        <property type="term" value="F:alanine racemase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030632">
        <property type="term" value="P:D-alanine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.37.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01201">
        <property type="entry name" value="Ala_racemase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000821">
        <property type="entry name" value="Ala_racemase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009006">
        <property type="entry name" value="Ala_racemase/Decarboxylase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011079">
        <property type="entry name" value="Ala_racemase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001608">
        <property type="entry name" value="Ala_racemase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020622">
        <property type="entry name" value="Ala_racemase_pyridoxalP-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029066">
        <property type="entry name" value="PLP-binding_barrel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00842">
        <property type="entry name" value="Ala_racemase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01168">
        <property type="entry name" value="Ala_racemase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00992">
        <property type="entry name" value="ALARACEMASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01005">
        <property type="entry name" value="Ala_racemase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50621">
        <property type="entry name" value="SSF50621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51419">
        <property type="entry name" value="SSF51419"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00492">
        <property type="entry name" value="alr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00395">
        <property type="entry name" value="ALANINE_RACEMASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3 4" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ala_racemase_C" evidence="5">
        <location>
            <begin position="242"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; specific for D-alanine" evidence="3">
        <location>
            <position position="36"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; specific for L-alanine" evidence="3">
        <location>
            <position position="263"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="311"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="3 4">
        <location>
            <position position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR600821-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM01005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="381" mass="42325" checksum="DB0BDD1184D30EA4" modified="2015-11-11" version="1">MHRPTWVEIDLHALRHNLLAIQRKVGPQIKIMGIVKADAYGHGDYEVSRILLKHGVAMLGIAILEEAIQLRDKGIQAPLFLFGGIFEEQIDDVIHYNVTPSVYDLKLAGVLSKRAQYFHKTVSVHVYVDTGMGSIGVRHDKAVAFVKSLQEMKNLSVDGIYTHCSCSDEKESAYTNLQISRFRDVLARLEVAKIPIPLRHMANSGAIIGYPDAYFAMVRPGLSLYGLYPSDGVSRDIGIRPVMCLKTRIIHIKEFEPGDVVGYGRAHVVTKRTSVATLPFGYNDGYNRLLSGQGFVLIRGIKAPIIGRVCMDQCFVDISHMQGATVGDEVVVYGQQGQESISIESVAKQLNTIPYEVTCNVSKRVPRSILEMRMESGLRQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYC3</accession>
    <name>A0A0M2UYC3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00198</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000024">
        <property type="protein sequence ID" value="KKO21073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21073">
        <property type="protein sequence ID" value="KKO21073"/>
        <property type="gene ID" value="BROFUL_00198"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.243"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026350">
        <property type="entry name" value="GxxExxY"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13366">
        <property type="entry name" value="PDDEXK_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04256">
        <property type="entry name" value="GxxExxY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="136" mass="15297" checksum="D338938C5F8A7848" modified="2015-11-11" version="1">MNENELSEKIIGLAIKVHSALGPGLLESAYEKALVFELSRNGYKAEVQKSISINYEGIIIDEGYRADIVVNDIVLIELKSVKQIEDIHLKQLLTYLRLSGKKLGLLINFNEILLKNGIRRVINGTIELAHKRKDSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYD6</accession>
    <name>A0A0M2UYD6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00408</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000055">
        <property type="protein sequence ID" value="KKO20862.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20862">
        <property type="protein sequence ID" value="KKO20862"/>
        <property type="gene ID" value="BROFUL_00408"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20862.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="43" mass="4923" checksum="E8C6624E82297CDD" modified="2015-11-11" version="1" fragment="single">FTRNDNVQCAIKVHGRCHCEGPFPKQSPRFHKGNLVAALPRYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYI2</accession>
    <name>A0A0M2UYI2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00139</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000016">
        <property type="protein sequence ID" value="KKO21138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21138">
        <property type="protein sequence ID" value="KKO21138"/>
        <property type="gene ID" value="BROFUL_00139"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="102" mass="12139" checksum="C460FCD7FB138728" modified="2015-11-11" version="1">MVHYTCDMCGRPLLADEDIRYVVKIEVYTACDAMEMDDDDMDEEIWEMEEEYGQDEAPCSAEGFEDGDYKTFRFDLCTKCHKKYLQDPLFLKSWNKTRFSEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYJ1</accession>
    <name>A0A0M2UYJ1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Capsular polysaccharide biosynthesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00109</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000015">
        <property type="protein sequence ID" value="KKO21148.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21148">
        <property type="protein sequence ID" value="KKO21148"/>
        <property type="gene ID" value="BROFUL_00109"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.139"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016040">
        <property type="entry name" value="NAD(P)-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16363">
        <property type="entry name" value="GDP_Man_Dehyd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD(P)-bd_dom" evidence="1">
        <location>
            <begin position="4"/>
            <end position="301"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF16363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21148.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="325" mass="36586" checksum="4747CDF7C723F8AC" modified="2015-11-11" version="1">MAILVTGGAGFIGSHLVERLLSAGEQVVVIDNFNDFYPPAYKKENISGVLGNPHLALYETDIGNTASCREIFEKHGIEKIVHLAAYAGVRPSIERPLLYEEVNGRGTLNLLELSRIYKVKQFIFGSSSSVYGNNKKIPFSEDDPVNEPISPYAATKRAGELYCYNYHHLYKVPVTCLRFFTVYGPRQRPDLAIRKFTELIDHDQQIPMYGDGTTQRDYTFVSDIIDGVVAAVNRQFDFEIINLGNSAPIQLIKLIELIEREMGKKANIKRLPEQPGDVHRTYADIHKAGRSLDYKPKYPLSKASACSWRGTKGAKNKRAILFLKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYR6</accession>
    <name>A0A0M2UYR6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00297</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000035">
        <property type="protein sequence ID" value="KKO20962.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20962">
        <property type="protein sequence ID" value="KKO20962"/>
        <property type="gene ID" value="BROFUL_00297"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20962.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="39" mass="4735" checksum="6E69A3DD2D59A15B" modified="2015-11-11" version="1">MCNLLVSMLQMWVRQEGTIRRTKLVSLHLDETRYQTRVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYU0</accession>
    <name>A0A0M2UYU0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha/beta hydrolase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01156</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000124">
        <property type="protein sequence ID" value="KKO20131.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20131">
        <property type="protein sequence ID" value="KKO20131"/>
        <property type="gene ID" value="BROFUL_01156"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022742">
        <property type="entry name" value="Hydrolase_4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12146">
        <property type="entry name" value="Hydrolase_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hydrolase_4" evidence="1">
        <location>
            <begin position="78"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20131.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="312" mass="35528" checksum="EC6C2E73CBB44094" modified="2015-11-11" version="1">MLNTLSENDWSKIDRFASRIDQEHNLHEKAFFFQHEGKRLFGILHRPLNISDGQRKIGIVMCQPYLVEPLITQRLEIDIARSLAQNGFSVFRFHYRGCGDSEGDFKDTTLSSQISDTAMAIKVFTEQEDLDSIGLLGIRLGGTVALMAAEVEKRIEFVVLCEPIIEPKSCFLDLFRTAKFSAVVRQEKIISTEQMIQHLMTHGMVTVLGYPLYKEIFVETASFNLMQSAKYFSGKTLLIQVSGLSIKVTKAFRDLGNQIQKNGGSCDITLIHERRLAWNFILHPPFRSEKIVQTILQWCKKLIVCPANKVII</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYU8</accession>
    <name>A0A0M2UYU8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Fic/DOC family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00280</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000032">
        <property type="protein sequence ID" value="KKO20997.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20997">
        <property type="protein sequence ID" value="KKO20997"/>
        <property type="gene ID" value="BROFUL_00280"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003812">
        <property type="entry name" value="Fido"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036597">
        <property type="entry name" value="Fido-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040198">
        <property type="entry name" value="Fido_containing"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13504">
        <property type="entry name" value="PTHR13504"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02661">
        <property type="entry name" value="Fic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140931">
        <property type="entry name" value="SSF140931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51459">
        <property type="entry name" value="FIDO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fido" evidence="3">
        <location>
            <begin position="51"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="134"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="138"/>
            <end position="145"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR640198-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR640198-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51459"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20997.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="200" mass="22677" checksum="B4494CED052B325C" modified="2015-11-11" version="1">MGEEAGQLGSTRSFETVEGALTYPEVSEKLAVSLAQILARLLKTPPHEIIITPEWLCRKHQELAGHLFPEWAGRFRTTNVMVGTLEPPAYYKVPLLVHSFCDDLAERLRHVDEGNLPDIAAFLAWVDWRFQWVHPFKDFNGRIGRLALAALLYKLALPPVETAPTEPEMRREYLEALRAGDAGNLDPLQKIWIRRLGEAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ31</accession>
    <name>A0A0M2UZ31_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00186</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000020">
        <property type="protein sequence ID" value="KKO21082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21082">
        <property type="protein sequence ID" value="KKO21082"/>
        <property type="gene ID" value="BROFUL_00186"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="SSF49899"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644103" evidence="1">
        <location>
            <begin position="24"/>
            <end position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="229" mass="25842" checksum="A8EB2354FB617F33" modified="2015-11-11" version="1">MKKLFIATIICCMSSFIGSYAHAQQGQKITGSEILGERKEHYFDDDKDGDLPRGFQNAFTGKGEPGHWVVKKIEHAPSADNVVVQTKLDGTDYRFSLLIMDGVSYKDAMAFVKFRAISGDVDQSGGLVFRYKDSNNYYVLRANAKENNVRLYKVVDGNRRQIGGKDLKVKSNEWHLLKVVYKGDKVQCFFNNAKVIEVADDTFDQGGVGLWTKADSYTFFDDFVVQESK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ63</accession>
    <name>A0A0M2UZ63_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Site-specific tyrosine recombinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">xerD_1</name>
        <name evidence="4" type="ORF">BROFUL_00332</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000042">
        <property type="protein sequence ID" value="KKO20930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20930">
        <property type="protein sequence ID" value="KKO20930"/>
        <property type="gene ID" value="BROFUL_00332"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.408"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044068">
        <property type="entry name" value="CB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004107">
        <property type="entry name" value="Integrase_SAM-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13495">
        <property type="entry name" value="Phage_int_SAM_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51900">
        <property type="entry name" value="CB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Core-binding (CB)" evidence="3">
        <location>
            <begin position="1"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="132" mass="15529" checksum="5BAB54711047ACDE" modified="2015-11-11" version="1">MKSHDPIAEWKKAHTKLFAEIKTRHYSPKTLRFYSLWVRKFQLFLKNKPPGDLSSADAKEFLRFLAIRENVSASSQNQAFNALLFFYRYAIKRDFGDQRDNVRAKRRCHIPVAQIDVVLKNLSSPYNLIVKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZA5</accession>
    <name>A0A0M2UZA5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Radical SAM core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_01472</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000151">
        <property type="protein sequence ID" value="KKO19804.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19804">
        <property type="protein sequence ID" value="KKO19804"/>
        <property type="gene ID" value="BROFUL_01472"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040086">
        <property type="entry name" value="MJ0683-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43432">
        <property type="entry name" value="PTHR43432"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01084">
        <property type="entry name" value="Uncharacterised_Radical_SAM_Su"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="6">
        <location>
            <begin position="25"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19804.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="281" mass="32752" checksum="F4659B4669F12108" modified="2015-11-11" version="1">MPEIHEITTNRILNPTSINLGEYVINPYVGCEFACLYCYVRSNKVTGKRKDPWGDYVDIRINTPGLLEREILEKCPKTVLLGSTTECFQPVEREFQLTRKILEILNKHGVSYIILTRSPAIVDYTPLLNQGFCKKIYFTVNHFNDTFKEVLEPKSPAFSDRNKAVCVLLDAGISVIPYYSPVIPGVTDTRAVFSPFAKAERIEFEYLNFNLKNTRDIIKNISRVCPDRGMHIVRMFTEKGHYEQTWDNLDEEIEMQARVANKKYTIYRHPFGEFFRNFYFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZA6</accession>
    <name>A0A0M2UZA6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative flavoprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00143</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the N-terminal section; belongs to the zinc metallo-hydrolase group 3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000016">
        <property type="protein sequence ID" value="KKO21142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21142">
        <property type="protein sequence ID" value="KKO21142"/>
        <property type="gene ID" value="BROFUL_00143"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008254">
        <property type="entry name" value="Flavodoxin/NO_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001226">
        <property type="entry name" value="Flavodoxin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016440">
        <property type="entry name" value="Rubredoxin-O_OxRdtase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00258">
        <property type="entry name" value="Flavodoxin_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12706">
        <property type="entry name" value="Lactamase_B_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005243">
        <property type="entry name" value="ROO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00201">
        <property type="entry name" value="FLAVODOXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50902">
        <property type="entry name" value="FLAVODOXIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavodoxin-like" evidence="2">
        <location>
            <begin position="251"/>
            <end position="389"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO21142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="398" mass="45394" checksum="07A18FCCDB53AEF4" modified="2015-11-11" version="1">MQTLEIIKNVHWVGALNATLRVFDVVFQTRFGSTYNSYLILADKPTLIDCVHEKFAQEHLEKLRSLINLNDICYIVVNHAEMDHTGALDMLLKEAPNAQILATRTAALFLKNILHRDVQGRMVEDGETISLGNKQLRFIHAPYWHWPDTMFTYLAEDRVLFPCDGFATHFCDERLFDDRVDDFTEDFRYYFEHVMGPYRKKILEAIEKIKDMDIRLIAPSHGPILRTDPWKYIHAYKDWSTARKDPYKKLILVFYASMYGNTRKMAEAVAKGATTVNTEVKLFDATTVSPESMRCEIESADGILMGSSTINGDALKPLWDILNVMFSVNVKLKKCATFGAYGWSGEATRLLEERLRGLKLTIVQPPIKALLTPTAEDLKKCSIFGYDFAASLTASPAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZB2</accession>
    <name>A0A0M2UZB2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Tryptophan--tRNA ligase</fullName>
            <ecNumber evidence="8">6.1.1.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Tryptophanyl-tRNA synthetase</fullName>
            <shortName evidence="8">TrpRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">trpS</name>
        <name evidence="10" type="ORF">BROFUL_00980</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the attachment of tryptophan to tRNA(Trp).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>ATP + L-tryptophan + tRNA(Trp) = AMP + diphosphate + H(+) + L-tryptophanyl-tRNA(Trp)</text>
            <dbReference type="Rhea" id="RHEA:24080"/>
            <dbReference type="Rhea" id="RHEA-COMP:9671"/>
            <dbReference type="Rhea" id="RHEA-COMP:9705"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57912"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78535"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.2"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8 9">Belongs to the class-I aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.2" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000117">
        <property type="protein sequence ID" value="KKO20306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20306">
        <property type="protein sequence ID" value="KKO20306"/>
        <property type="gene ID" value="BROFUL_00980"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1229"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004830">
        <property type="term" value="F:tryptophan-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006436">
        <property type="term" value="P:tryptophanyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00806">
        <property type="entry name" value="TrpRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00140_B">
        <property type="entry name" value="Trp_tRNA_synth_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002305">
        <property type="entry name" value="aa-tRNA-synth_Ic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002306">
        <property type="entry name" value="Trp-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024109">
        <property type="entry name" value="Trp-tRNA-ligase_bac-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00579">
        <property type="entry name" value="tRNA-synt_1b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01039">
        <property type="entry name" value="TRNASYNTHTRP"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00233">
        <property type="entry name" value="trpS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8 9" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="5 8 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 8 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 8 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 8 9" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="8">
        <location>
            <begin position="178"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="4"/>
            <end position="5"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="120"/>
        </location>
        <ligand>
            <name>L-tryptophan</name>
            <dbReference type="ChEBI" id="CHEBI:57912"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="132"/>
            <end position="134"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="170"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="178"/>
            <end position="182"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00140"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU363036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO20306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="311" mass="35501" checksum="A725BD8C4833FE7C" modified="2015-11-11" version="1">MHIGNYLGALKNWVRMIDQYDCIFCIVDYHAITIEYNPADMQRRILNAAAVNIAAGLDPERCIIFVQSYVPEHTELAWILNTVTPMGHLERMTQFKDKSKQHRENINAGLFTYPVLQAADILLYHGEAVPVGEDQVQHIELAREIARKFNMRYGETFPDPVEVLSDAPRIMGLDGKTKMSKSLGNYISLVETPESIWKKLSTAVTDENRKRRTDPGNPDICNLFTLHKYFSRKEQIDRINTVCRTAEIGCIECKKILSDNIVEALAPIRMRYEQLISDPDYLADILHAGAKKCRDIAVNTMTDVKKKMGLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZL4</accession>
    <name>A0A0M2UZL4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">PDZ domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01326</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000139">
        <property type="protein sequence ID" value="KKO19934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19934">
        <property type="protein sequence ID" value="KKO19934"/>
        <property type="gene ID" value="BROFUL_01326"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13180">
        <property type="entry name" value="PDZ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00228">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="SSF50156"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50106">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644112" description="PDZ domain-containing protein" evidence="2">
        <location>
            <begin position="22"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="domain" description="PDZ" evidence="3">
        <location>
            <begin position="150"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="278"/>
            <end position="311"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="346" mass="38081" checksum="0B30332FD6CD42BD" modified="2015-11-11" version="1">MNRKKLLSLALAIFMTGCSSSQYLKKMSPFKKEEASLEPGKGSQPADAQKKDDLFVCAGDIDVTYKKLGEVSLGEYGFSGHDVLAIKIREKARAVGAEAVVNVQYDTGASKTWQGYGELGGTDYGVRYTSWCKGMAIQFMESHNSLGLLSSNLTPENKEWFGLKKAQQGVIVVHVQPGSVASAAGIKPEDLIVEWNGEKIENRNHLKKLMERTAGKEARLILLRAKEIKTVALSVPLITHRPVASPAPQLPATETRTETVVSETSHDAPHDTKSTNTPEVHNEIGDLYLRKGMYDDAIGEYQKAIASDPNSAISYFNLSLAYDKKGLKREAEEAYATYKKLKPKRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V052</accession>
    <name>A0A0M2V052_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Polysaccharide biosynthesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01149</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the polysaccharide synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000124">
        <property type="protein sequence ID" value="KKO20124.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20124">
        <property type="protein sequence ID" value="KKO20124"/>
        <property type="gene ID" value="BROFUL_01149"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1420"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd05237">
        <property type="entry name" value="UDP_invert_4-6DH_SDR_e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003869">
        <property type="entry name" value="Polysac_CapD-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02719">
        <property type="entry name" value="Polysacc_synt_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Polysacc_synt_2" evidence="2">
        <location>
            <begin position="10"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007430"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02719"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20124.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="382" mass="43177" checksum="C4BCEBB01089898C" modified="2015-11-11" version="1">MKDFYNNKKILITGAAGTVGREIVRQLLFFKPGELRLVDNNESETFFLMEEYKNKNVFCFLGDVRDKEKIEKLSSDIDIIIHCAAFKHVILSEYNPFDVVRTNIIGVENVISAARKCNAKNVLFTSSDKAVNPTNVMGTSKLMGERLVTAANAVKSNTQTIFSSTRFGNVIGSRGSVVPVFMKQIRNGGPVTVTDMRMTRFVMTIEESARLVLKSVTISKGGEVFVTKMPIVRIPDLAEVMIEFLAPRYGYRPSDIKIEKIGAKPGEKLYEELMSEEEVHRSLELKDMFVITPAFKSIYEAIKYEYPDIISDRLQKSYVSTTEEPLSKNAIKKYLMDNKIFGQIEEGFHRNEKPESKEAGKNYLLASKSVEKSEADFFESAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V098</accession>
    <name>A0A0M2V098_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Endoribonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01123</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the RutC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20164">
        <property type="protein sequence ID" value="KKO20164"/>
        <property type="gene ID" value="BROFUL_01123"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1393"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006056">
        <property type="entry name" value="RidA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035959">
        <property type="entry name" value="RutC-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006175">
        <property type="entry name" value="YjgF/YER057c/UK114"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11803">
        <property type="entry name" value="PTHR11803"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01042">
        <property type="entry name" value="Ribonuc_L-PSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55298">
        <property type="entry name" value="SSF55298"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00004">
        <property type="entry name" value="TIGR00004"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="127" mass="13765" checksum="12E97F50940B5F84" modified="2015-11-11" version="1">MEKTVIATNNAPAAIGPYSQAIRMGNMVFLSGQIPLHPVTGEIVQGDIRAQTRQVLENLKCVLEAAGSSPDKVVKTTIFMKDLNDYVTINAVYQEFFSNKPPARTTVQAARLPRDAGVEIEAIAFCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0I3</accession>
    <name>A0A0M2V0I3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00579</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000081">
        <property type="protein sequence ID" value="KKO20691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20691">
        <property type="protein sequence ID" value="KKO20691"/>
        <property type="gene ID" value="BROFUL_00579"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.728"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.260">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004792">
        <property type="entry name" value="BaiN-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023166">
        <property type="entry name" value="HI0933-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42887">
        <property type="entry name" value="PTHR42887"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00275">
        <property type="entry name" value="TIGR00275"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="411" mass="44950" checksum="2D794DC3D43DA0BE" modified="2015-11-11" version="1">MKDWYDLIVVGGGPAGMMAAGRAGARGKKVILLEKKDQLGKKLLICASGRCNVTNTASLEIFIEEYGKGGSFLRAALQRFDNEKLCSFLLSYGIETVVENKGRVFPKSQRADSVLMALKTYMHGHEVQIQTNSEVLELKVESNRVSGVETNHGNIFGKNIVIATGGCSYPATGSTGDGYRLASSVGHTIYPTYPAIIAFETEETWVKPLQGTPLKNVNITAYQSGKKIAEQFGEALFTHYGVSGPAILDMSKRIVECLHQGYVQIRIDLKPKHTPEELESILLDQIKRHGSKAMKSCLTFFIPEKLTPIFVNLCNIEPQKKASQITTPERKRIVKLLKGLSLTSVRHRPIEEAIVTAGGISLDEVDAKTMQSKLWKGLYFAGEVLDIDGPTGGFNLQAAFSTGYLTGDSVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0M1</accession>
    <name>A0A0M2V0M1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01100</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20249">
        <property type="protein sequence ID" value="KKO20249"/>
        <property type="gene ID" value="BROFUL_01100"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1367"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="137" mass="15481" checksum="AA9B4468B2537542" modified="2015-11-11" version="1">MAMTHGFELLIADNGKGMTPSQLREAMRYGAEREYEKEDLGKFGLGLKTASLSQCQRLSIASRNNPARADITAYCWDMAHIEKTNRWEILPLERNGIGPAIREPLKETTGTVVLWQRLNRILGYKHPYGEISSITTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0M6</accession>
    <name>A0A0M2V0M6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Polyprenyl synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00535</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the FPP/GGPP synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000075">
        <property type="protein sequence ID" value="KKO20736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20736">
        <property type="protein sequence ID" value="KKO20736"/>
        <property type="gene ID" value="BROFUL_00535"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008299">
        <property type="term" value="P:isoprenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00685">
        <property type="entry name" value="Trans_IPPS_HT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.600.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008949">
        <property type="entry name" value="Isoprenoid_synthase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000092">
        <property type="entry name" value="Polyprenyl_synt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033749">
        <property type="entry name" value="Polyprenyl_synt_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00348">
        <property type="entry name" value="polyprenyl_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48576">
        <property type="entry name" value="SSF48576"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00723">
        <property type="entry name" value="POLYPRENYL_SYNTHASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU004466"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="323" mass="36103" checksum="07716E957AD29655" modified="2015-11-11" version="1">MEPVGIFDSIKTLMDEVETRFHKELQPSNNSLADLIIHISKYKGKRLRPALVLLSGKCAGSVVPQHVDIAVVVEMVHTATLVHDDIIDEAAMRRHVESINSKWGREISILFGDYLFSRGFTILSSLDSQIATLLLSQTVNIMSEGELIQLQRRYDIGLSENDYFDIIERKTASLCAASCRLGATFAGANRKISDMLSTYGLKIGMAFQIVDDCLDVMGTEEEIGKSLNTDIQKGKLTLPLIHLMNQLPKNKLESARELIFQHDARETKSAIMELLTEHDAVEYAFATAKNMVKQAQEEIAPLPASPYKTTLMELADYIVTRRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0Q0</accession>
    <name>A0A0M2V0Q0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HicB-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01003</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000118">
        <property type="protein sequence ID" value="KKO20294.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20294">
        <property type="protein sequence ID" value="KKO20294"/>
        <property type="gene ID" value="BROFUL_01003"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031807">
        <property type="entry name" value="HicB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035069">
        <property type="entry name" value="TTHA1013/TTHA0281-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15919">
        <property type="entry name" value="HicB_lk_antitox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143100">
        <property type="entry name" value="SSF143100"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HicB-like" evidence="1">
        <location>
            <begin position="8"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF15919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20294.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="64" mass="7309" checksum="2D4336C8BAD5EE36" modified="2015-11-11" version="1">MKYKVNLKKNEEGYAVWVPGLPGCWSQGQTEEEALENSKDAIKAYVETVEELSNNKVSRYVEVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0X8</accession>
    <name>A0A0M2V0X8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">ArsB protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">arsB_1</name>
        <name evidence="11" type="ORF">BROFUL_00467</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the CitM (TC 2.A.11) transporter family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000061">
        <property type="protein sequence ID" value="KKO20811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20811">
        <property type="protein sequence ID" value="KKO20811"/>
        <property type="gene ID" value="BROFUL_00467"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015105">
        <property type="term" value="F:arsenite transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000802">
        <property type="entry name" value="Arsenical_pump_ArsB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004680">
        <property type="entry name" value="Cit_transptr-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03600">
        <property type="entry name" value="CitMHS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00758">
        <property type="entry name" value="ARSENICPUMP"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="58"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="94"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="178"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="230"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="281"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="315"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="416"/>
            <end position="437"/>
        </location>
    </feature>
    <feature type="domain" description="CitMHS" evidence="10">
        <location>
            <begin position="16"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="438"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF03600"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO20811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="438" mass="47812" checksum="4C8C2098EC8DAFE1" modified="2015-11-11" version="1" fragment="single">MVFWIATIIFLVSFGLIVSEIVDKTKVALIGASLMMILKIVTQHEAFYDKHFAIDYNVIFLLIGMMIIVNILSKTGLFQFLAIKSAKLAKGKPFLILIFITCITAALSAILDNVTTVLLLVPVSLFLADELEVDPFPFLLSEIMASNIGGTATLIGDPPNIMIASKIHLTFMDFICHMAPAVLFIFGFFILTIRILFGKKLQVNEAVRQKIFAIDEFSLIKNYSLLKKSLVVLGLVMLGFVFHGAFHYEPATIALLGAAILFIISKEDPHHVLRELEWPTLFFFIGLFIIVGGVVKVGLISYLSSGMISLTNPTADNMFITAITTLWFSAICSAIVDNIPFVASMIPLVTDTAHAILPSGADFKSVVQHSTLMPVWWSLALGACLGGNGSPVGASANVITLGLANKAGCPISFKKFIVYAVPITVESIIISTLYIWLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1J9</accession>
    <name>A0A0M2V1J9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00713</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20594.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20594">
        <property type="protein sequence ID" value="KKO20594"/>
        <property type="gene ID" value="BROFUL_00713"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.905"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011703">
        <property type="entry name" value="ATPase_AAA-3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041628">
        <property type="entry name" value="ChlI/MoxR_AAA_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07726">
        <property type="entry name" value="AAA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17863">
        <property type="entry name" value="AAA_lid_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="1">
        <location>
            <begin position="72"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20594.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="361" mass="40642" checksum="542A3F1D40AC2114" modified="2015-11-11" version="1">MVAISSVLGLSEQLQHRRSFFIIVMNQTETDKTDQQTIEKIVNSRLKIKKEIAKIIIGQEEVIDYLLVALFCKGHCLFVGVPGLAKTLLVSTLADILNLKFNRIQFTPDLMPADITGTDILEQDHATGKRFFKFIKGPIFSNILLADEINRTPPKTQAALLQSMQEYKVTASGTTYLLDLPFIVFATQNPIEQEGTYPLPEAQLDRFMFQIDVRYPSAEEELEIVRTTTSAFKPTVEKVFNPTEIMDLQDLVTRVPVADYVLEYAIRLVRASRPTDPSAPDFIKRWINWGAGPRASQFLILGSKARALLDGRFAATCNDVRTIARPILQHRIITNFNAEAEGKTSLHVIGQLLDTINEHPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1U6</accession>
    <name>A0A0M2V1U6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">ATP-dependent zinc metalloprotease FtsH</fullName>
            <ecNumber evidence="5">3.4.24.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">ftsH</name>
        <name evidence="9" type="ORF">BROFUL_00577</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="5">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homohexamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
            <orientation evidence="5">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the AAA ATPase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">In the C-terminal section; belongs to the peptidase M41 family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">In the central section; belongs to the AAA ATPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.24.-" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000081">
        <property type="protein sequence ID" value="KKO20689.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20689">
        <property type="protein sequence ID" value="KKO20689"/>
        <property type="gene ID" value="BROFUL_00577"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.725"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030163">
        <property type="term" value="P:protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.760">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01458">
        <property type="entry name" value="FtsH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041569">
        <property type="entry name" value="AAA_lid_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003960">
        <property type="entry name" value="ATPase_AAA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005936">
        <property type="entry name" value="FtsH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000642">
        <property type="entry name" value="Peptidase_M41"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037219">
        <property type="entry name" value="Peptidase_M41-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17862">
        <property type="entry name" value="AAA_lid_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01434">
        <property type="entry name" value="Peptidase_M41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140990">
        <property type="entry name" value="SSF140990"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01241">
        <property type="entry name" value="FtsH_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00674">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 5 9" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="5 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 5 9" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644186" description="ATP-dependent zinc metalloprotease FtsH" evidence="7">
        <location>
            <begin position="29"/>
            <end position="614"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="110"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="domain" description="AAA" evidence="8">
        <location>
            <begin position="189"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="active site" evidence="5">
        <location>
            <position position="421"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="197"/>
            <end position="204"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="420"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="424"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="497"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20689.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="614" mass="68051" checksum="AAB2005075FB3F9D" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1Y1</accession>
    <name>A0A0M2V1Y1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="16">UDP-N-acetylenolpyruvoylglucosamine reductase</fullName>
            <ecNumber evidence="16">1.3.1.98</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="16">UDP-N-acetylmuramate dehydrogenase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="16" type="primary">murB</name>
        <name evidence="18" type="ORF">BROFUL_00571</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 16">Cell wall formation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 16">
            <text>NADP(+) + UDP-N-acetyl-alpha-D-muramate = H(+) + NADPH + UDP-N-acetyl-3-O-(1-carboxyvinyl)-alpha-D-glucosamine</text>
            <dbReference type="Rhea" id="RHEA:12248"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:68483"/>
            <dbReference type="ChEBI" id="CHEBI:70757"/>
            <dbReference type="EC" id="1.3.1.98"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 16">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="5 16">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4 16">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="16">Belongs to the MurB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.3.1.98" evidence="16"/>
    <dbReference type="EMBL" id="LAQJ01000079">
        <property type="protein sequence ID" value="KKO20704.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20704">
        <property type="protein sequence ID" value="KKO20704"/>
        <property type="gene ID" value="BROFUL_00571"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.716"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008762">
        <property type="term" value="F:UDP-N-acetylmuramate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.78.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00037">
        <property type="entry name" value="MurB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003170">
        <property type="entry name" value="MurB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011601">
        <property type="entry name" value="MurB_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036635">
        <property type="entry name" value="MurB_C_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21071">
        <property type="entry name" value="PTHR21071"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02873">
        <property type="entry name" value="MurB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56194">
        <property type="entry name" value="SSF56194"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00179">
        <property type="entry name" value="murB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="14 16" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="7 16" id="KW-0132">Cell division</keyword>
    <keyword evidence="11 16" id="KW-0133">Cell shape</keyword>
    <keyword evidence="15 16" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="6 16" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 16" id="KW-0274">FAD</keyword>
    <keyword evidence="8 16" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="10 16" id="KW-0521">NADP</keyword>
    <keyword evidence="13 16" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12 16" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MurB_C" evidence="17">
        <location>
            <begin position="126"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="16">
        <location>
            <position position="153"/>
        </location>
    </feature>
    <feature type="active site" evidence="16">
        <location>
            <position position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00003921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="Pfam" id="PF02873"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="KKO20704.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="230" mass="25549" checksum="921D43458FEBF709" modified="2015-11-11" version="1">MVIHNLADTISFLDNAVLVAESGVIVANLIEQCWGRGLSGFEHFIGIPSTVGGAMWQNLHFLSPDRTRTVFIESIVQTSRILTEEGRCCTVGVDYFQFDYDKSVLQKRKDIVLDVTFQLCSRQKEEIRAIMDANMAWRNARQPQLPEFPSCGSVFKKIKDIGAGRLIEQAGLKGACIGEAEVSKKHANFIVNRGNATACDVLQLIQHVQHVVKKKLGYALETEISIVGEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V243</accession>
    <name>A0A0M2V243_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative multicopper oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00078</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000008">
        <property type="protein sequence ID" value="KKO21196.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21196">
        <property type="protein sequence ID" value="KKO21196"/>
        <property type="gene ID" value="BROFUL_00078"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001117">
        <property type="entry name" value="Cu-oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045087">
        <property type="entry name" value="Cu-oxidase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011707">
        <property type="entry name" value="Cu-oxidase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11709">
        <property type="entry name" value="PTHR11709"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00394">
        <property type="entry name" value="Cu-oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07732">
        <property type="entry name" value="Cu-oxidase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49503">
        <property type="entry name" value="SSF49503"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644398" evidence="1">
        <location>
            <begin position="25"/>
            <end position="428"/>
        </location>
    </feature>
    <feature type="domain" description="Plastocyanin-like" evidence="3">
        <location>
            <begin position="157"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="domain" description="Plastocyanin-like" evidence="2">
        <location>
            <begin position="239"/>
            <end position="358"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00394"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO21196.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="428" mass="47930" checksum="9BD0AC9BA422A8E7" modified="2015-11-11" version="1">MKTLKNLLGVAAAVVCMGFATSFAAPDVFAGEAKKAEDWNMTQDELEEEALIDVTNGDVLGERAKDGAWEFHLYTTDGYIEMTNGELVWVFGYTHAKGSFENVGEVTTKEDAERLLEPVKVPSDPLHLFVGEKARIVLHNSGMHYAEEHSGINHVAHTIHFHGLDLAPAVDGVPSLPVDPVLEHKSFTYELTPQYEGSFMAHCHVDSFNHILAGMYFPLIVHHDRTKTAYGYKYDRDYTLFVSELSSTANEQLQESGVVHGLQDWKADYFLINGRTYTDNLFHPRSVINDPRSRIVCYEDEVVLLRFMAIGADHVFAFHPHGYHMEVIALDGRKLKSTYEKDTLCIASGERIDVLVRIPHFASQRKCLSCNLGAGISIMHDHNLRGMVSTGKYPMGALTIFDVKSKAKPVKPDEPLIKEGKPYNPLEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2I5</accession>
    <name>A0A0M2V2I5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00347</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000044">
        <property type="protein sequence ID" value="KKO20914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20914">
        <property type="protein sequence ID" value="KKO20914"/>
        <property type="gene ID" value="BROFUL_00347"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="43" mass="4904" checksum="057B20FCA226EF33" modified="2015-11-11" version="1">MSGNIRVSFITQIKKSIQQNKGFAGYLPYSDLGNKKSLWKKDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2U6</accession>
    <name>A0A0M2V2U6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00258</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000031">
        <property type="protein sequence ID" value="KKO21009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21009">
        <property type="protein sequence ID" value="KKO21009"/>
        <property type="gene ID" value="BROFUL_00258"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="50" mass="6034" checksum="CF7BC1A842267A7C" modified="2015-11-11" version="1">MKVTEKTLENKHARCYILIILLNFLAVLTVENFILFYPLEEKNVEKWEVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V382</accession>
    <name>A0A0M2V382_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Biotin-(Acetyl-CoA-carboxylase) ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00165</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000017">
        <property type="protein sequence ID" value="KKO21119.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21119">
        <property type="protein sequence ID" value="KKO21119"/>
        <property type="gene ID" value="BROFUL_00165"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.204"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004077">
        <property type="term" value="F:biotin-[acetyl-CoA-carboxylase] ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd16442">
        <property type="entry name" value="BPL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004408">
        <property type="entry name" value="Biotin_CoA_COase_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004143">
        <property type="entry name" value="BPL_LPL_catalytic"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03099">
        <property type="entry name" value="BPL_LplA_LipB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00121">
        <property type="entry name" value="birA_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51733">
        <property type="entry name" value="BPL_LPL_CATALYTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BPL/LPL catalytic" evidence="2">
        <location>
            <begin position="71"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO21119.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="305" mass="34067" checksum="0F4D952ECEB080F9" modified="2015-11-11" version="1">MIHTNHDNNLIQTSGKHPAKKSVHGETHGNEPASVKNGSDTLVRQPRNGAILPETPKRLQPDEITRELKTKVVGSSVITYEQTTSTMDIAKRIARTGFKNGTVIFAEEQTQGKGRSGHSWFCPRYKGLLFTLLLRHTIPQDHLCLFVGTMAVSITETIRETLHLPAEIKWPNDILIGRKKVGGVLVEWERGRKNQSVFLVGIGLNVNSSEEELPKQTRLPATSLSLESHSFIDRISLAKALLHDIDRWFSILKDEHFGYITEQWKNLCITVGETLTMKDGGAEYTGKVIDISNNGGLMLRLDNGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V3A0</accession>
    <name>A0A0M2V3A0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00145</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000016">
        <property type="protein sequence ID" value="KKO21144.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21144">
        <property type="protein sequence ID" value="KKO21144"/>
        <property type="gene ID" value="BROFUL_00145"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.182"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glycos_transf_1" evidence="1">
        <location>
            <begin position="196"/>
            <end position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21144.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="387" mass="44380" checksum="B5FB55C0E0BCF6D9" modified="2015-11-11" version="1">MRVAIVHDWLTGMRGGEKVLEIFCEIFPDADVFTLIHLRGSVSKIIEERNIQTSFLQKIPLTKRHYRSFLMLFPLAIEGFDMGAYDLVLSSSHCVAKGILTSATAVHVCYCHTPMRYVWDQYQTYFGAGQKGLISKVLMPPVAHYLRMWDVTSSERVDYFVANSYHVANRIKKYYKRLAEVIHPPVDCSLYTPQENYKEGNYYLLVSAFAPYKRIDIAIEAFERMGLPLILIGEGQEERRIRKMAKKHVQCIGWQSSESLREYYRGCKALIFPGEEDFGIVPLEAQACGKPVIAFARGGALETVHGVYPSPRESPAAKTLIDSESPTGVFFTKQTPGSLMEAVRFFEQRTNLFDPRLIRKHAENFDRSIFKEKFKQYIESNYSAKIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UP33</accession>
    <name>A0A0M2UP33_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03409</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000312">
        <property type="protein sequence ID" value="KKO17898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17898">
        <property type="protein sequence ID" value="KKO17898"/>
        <property type="gene ID" value="BROFUL_03409"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4185"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="150" mass="17256" checksum="A68D36429A7CEBB1" modified="2015-11-11" version="1">MDTVSYPDEKVIKFLNNFVIPLRVRHDAQPLATDFSIKWTPTLVILDSDGKEHHRTVGFLSPEELIPSLLLGIAKLHFDLNAFKEALSNLEKILFDFPKSSSAPEAIYLKGVCSYKDTKNPRGLKEAYEQLQARYPESEWTKRAYPYRLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPQ3</accession>
    <name>A0A0M2UPQ3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 13">Biotin synthase</fullName>
            <ecNumber evidence="3 13">2.8.1.6</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="primary">bioB</name>
        <name evidence="16" type="ORF">BROFUL_03448</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13">Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12 13">
            <text>(4R,5S)-dethiobiotin + [sulfur carrier]-SH + 2 reduced [2Fe-2S]-[ferredoxin] + 2 S-adenosyl-L-methionine = 2 5'-deoxyadenosine + [sulfur carrier]-H + biotin + 2 L-methionine + 2 oxidized [2Fe-2S]-[ferredoxin]</text>
            <dbReference type="Rhea" id="RHEA:22060"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="Rhea" id="RHEA-COMP:14737"/>
            <dbReference type="Rhea" id="RHEA-COMP:14739"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:29917"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:57586"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:64428"/>
            <dbReference type="ChEBI" id="CHEBI:149473"/>
            <dbReference type="EC" id="2.8.1.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="13 14">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
        <text evidence="13 14">Binds 1 [2Fe-2S] cluster. The cluster is coordinated with 3 cysteines and 1 arginine.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="13 14">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="13 14">Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 13">Cofactor biosynthesis; biotin biosynthesis; biotin from 7,8-diaminononanoate: step 2/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="13">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 13">Belongs to the radical SAM superfamily. Biotin synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.8.1.6" evidence="3 13"/>
    <dbReference type="EMBL" id="LAQJ01000315">
        <property type="protein sequence ID" value="KKO17872.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17872">
        <property type="protein sequence ID" value="KKO17872"/>
        <property type="gene ID" value="BROFUL_03448"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4235"/>
    <dbReference type="UniPathway" id="UPA00078">
        <property type="reaction ID" value="UER00162"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004076">
        <property type="term" value="F:biotin synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009102">
        <property type="term" value="P:biotin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01694">
        <property type="entry name" value="BioB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010722">
        <property type="entry name" value="BATS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002684">
        <property type="entry name" value="Biotin_synth/BioAB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024177">
        <property type="entry name" value="Biotin_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22976">
        <property type="entry name" value="PTHR22976"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06968">
        <property type="entry name" value="BATS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001619">
        <property type="entry name" value="Biotin_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00876">
        <property type="entry name" value="BATS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00433">
        <property type="entry name" value="bioB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 13 14" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="4 13 14" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="9 13" id="KW-0093">Biotin biosynthesis</keyword>
    <keyword evidence="10 13 14" id="KW-0408">Iron</keyword>
    <keyword evidence="11 13 14" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="8 13 14" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 13 14" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="5 13" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Radical SAM core" evidence="15">
        <location>
            <begin position="48"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13 14">
        <location>
            <position position="66"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13 14">
        <location>
            <position position="70"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13 14">
        <location>
            <position position="73"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13 14">
        <location>
            <position position="203"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13 14">
        <location>
            <position position="273"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010765"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRSR" id="PIRSR001619-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="KKO17872.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="329" mass="36383" checksum="9330EE303304B54D" modified="2015-11-11" version="1">MNDTIKNIANQSLQNKPISREDALFIIHREGDEIHDLFYWANQIRLRYFGHSVKACSIVSAKQGQCTEDCSFCSQSARYHTGVEEFPLVDASKILDVAQCAEQTGASSLGIVTSGYGIKNARDLRSICAAIEEVAKHSHIQPHGSFGTLTKETAESLVKSGLKRLNHNLETSERFFPGICSTHTFHDRVNTIRYAKEAGLEICSGAIFGLGESREDRIDLAFTLKSLEVDVVPLNFLHPVSGTPLANAIPLTPMEALKIIAVFRFILPDKEIKIAGGREKNLRDLQSWMFYAGANSTMMGNYLTTTGRKVEDDFQMIKDLGLQLAGNQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ36</accession>
    <name>A0A0M2UQ36_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Y1_Tnp domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03320</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000303">
        <property type="protein sequence ID" value="KKO17997.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17997">
        <property type="protein sequence ID" value="KKO17997"/>
        <property type="gene ID" value="BROFUL_03320"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4089"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1290">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002686">
        <property type="entry name" value="Transposase_17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036515">
        <property type="entry name" value="Transposase_17_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01797">
        <property type="entry name" value="Y1_Tnp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143422">
        <property type="entry name" value="SSF143422"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Y1_Tnp" evidence="1">
        <location>
            <begin position="9"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01797"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO17997.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="173" mass="20083" checksum="4F5254F19A57F2D4" modified="2015-11-11" version="1">MKRTDNKALHLIAVPPSEKALSQTIGEAHRRYTRRINFREGWRGHLWQGRFASFPMDKTHLYVAARYVELNPVRANLVKKPQEYRWSSASAHIAGRDDRLVHVAPLLEMFGEWGDFLSRGLSDEEVEKFRCHERTGRPLGTNRFIARLENVLGRMLNKQKPGPKALQKKNKNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQH9</accession>
    <name>A0A0M2UQH9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Putative succinate dehydrogenase flavoprotein subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_03403</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000311">
        <property type="protein sequence ID" value="KKO17915.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17915">
        <property type="protein sequence ID" value="KKO17915"/>
        <property type="gene ID" value="BROFUL_03403"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4179"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022900">
        <property type="term" value="P:electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.700.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003953">
        <property type="entry name" value="FAD-binding_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003952">
        <property type="entry name" value="FRD_SDH_FAD_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037099">
        <property type="entry name" value="Fum_R/Succ_DH_flav-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015939">
        <property type="entry name" value="Fum_Rdtase/Succ_DH_flav-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030664">
        <property type="entry name" value="SdhA/FrdA/AprA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027477">
        <property type="entry name" value="Succ_DH/fumarate_Rdtase_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014006">
        <property type="entry name" value="Succ_Dhase_FrdA_Gneg"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11632">
        <property type="entry name" value="PTHR11632"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00890">
        <property type="entry name" value="FAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02910">
        <property type="entry name" value="Succ_DH_flav_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46977">
        <property type="entry name" value="SSF46977"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56425">
        <property type="entry name" value="SSF56425"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01812">
        <property type="entry name" value="sdhA_frdA_Gneg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00504">
        <property type="entry name" value="FRD_SDH_FAD_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0249">Electron transport</keyword>
    <keyword evidence="5" id="KW-0274">FAD</keyword>
    <keyword evidence="4" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="domain" description="FAD_binding_2" evidence="9">
        <location>
            <begin position="5"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="domain" description="Succ_DH_flav_C" evidence="10">
        <location>
            <begin position="451"/>
            <end position="574"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00890"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO17915.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="574" mass="62495" checksum="B65B17B56AA2EADF" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQJ4</accession>
    <name>A0A0M2UQJ4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 7">UDP-glucose 6-dehydrogenase</fullName>
            <ecNumber evidence="4 7">1.1.1.22</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">BROFUL_03381</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>H2O + 2 NAD(+) + UDP-alpha-D-glucose = 3 H(+) + 2 NADH + UDP-alpha-D-glucuronate</text>
            <dbReference type="Rhea" id="RHEA:23596"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58052"/>
            <dbReference type="ChEBI" id="CHEBI:58885"/>
            <dbReference type="EC" id="1.1.1.22"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Nucleotide-sugar biosynthesis; UDP-alpha-D-glucuronate biosynthesis; UDP-alpha-D-glucuronate from UDP-alpha-D-glucose: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.22" evidence="4 7"/>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17930">
        <property type="protein sequence ID" value="KKO17930"/>
        <property type="gene ID" value="BROFUL_03381"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4158"/>
    <dbReference type="UniPathway" id="UPA00038">
        <property type="reaction ID" value="UER00491"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003979">
        <property type="term" value="F:UDP-glucose 6-dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000271">
        <property type="term" value="P:polysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006065">
        <property type="term" value="P:UDP-glucuronate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017476">
        <property type="entry name" value="UDP-Glc/GDP-Man"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014027">
        <property type="entry name" value="UDP-Glc/GDP-Man_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036220">
        <property type="entry name" value="UDP-Glc/GDP-Man_DH_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014026">
        <property type="entry name" value="UDP-Glc/GDP-Man_DH_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001732">
        <property type="entry name" value="UDP-Glc/GDP-Man_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028357">
        <property type="entry name" value="UDPglc_DH_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028356">
        <property type="entry name" value="UDPglc_DH_euk"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11374">
        <property type="entry name" value="PTHR11374"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00984">
        <property type="entry name" value="UDPG_MGDP_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03720">
        <property type="entry name" value="UDPG_MGDP_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03721">
        <property type="entry name" value="UDPG_MGDP_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF500134">
        <property type="entry name" value="UDPglc_DH_bac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000124">
        <property type="entry name" value="UDPglc_GDPman_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00984">
        <property type="entry name" value="UDPG_MGDP_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52413">
        <property type="entry name" value="SSF52413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03026">
        <property type="entry name" value="NDP-sugDHase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7 10" id="KW-0520">NAD</keyword>
    <keyword evidence="5 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UDPG_MGDP_dh_C" evidence="11">
        <location>
            <begin position="274"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="9">
        <location>
            <begin position="104"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="9">
        <location>
            <begin position="207"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="8">
        <location>
            <position position="218"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="34"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="74"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="107"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="162"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="215"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="221"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="281"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="288"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000874"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006601"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRNR" id="PIRNR000124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR500134-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR500134-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR500134-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO17930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="401" mass="45686" checksum="572E8494804615C1" modified="2015-11-11" version="1">MDIVKKSRGRNLFFSTDIEENIRKADIIFVSVNTPTKTYGSGAGKTADLQYWEKTARNIVRIAESDKIIVEKSTLPVRTAEAMERILNTMNKGIHFDVISNPEFLAEGTAISDLENPDRVLIGSHETDKGRRAREEIVEIYANWVPRDRIITCDVWSAELSKLVANAFLAQRISSINSISALCERTQADVKKVAHAIGMDSRIGSKFLNASVGFGGSCFRKDILNLVYICEHYGLHEVAQYWESVVKINEYQEGRFVKTMIHAMFNTIAHKRIALFGFAFKANTGDTRESPAIYVVRKLVEEHARVVITDPEALRNAEQDLKDLHEYVEFEPDPYKAARHAHAIAVTTEWDQYKTLDYKKIFENMEKPAFLFDGRNILDHQKIHEIGFNVYPIGKQSLVHF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQV4</accession>
    <name>A0A0M2UQV4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Glutamate-1-semialdehyde 2,1-aminomutase</fullName>
            <shortName evidence="7">GSA</shortName>
            <ecNumber evidence="7">5.4.3.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Glutamate-1-semialdehyde aminotransferase</fullName>
            <shortName evidence="7">GSA-AT</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">hemL</name>
        <name evidence="9" type="ORF">BROFUL_02851</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>(S)-4-amino-5-oxopentanoate = 5-aminolevulinate</text>
            <dbReference type="Rhea" id="RHEA:14265"/>
            <dbReference type="ChEBI" id="CHEBI:57501"/>
            <dbReference type="ChEBI" id="CHEBI:356416"/>
            <dbReference type="EC" id="5.4.3.8"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 7">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; 5-aminolevulinate from L-glutamyl-tRNA(Glu): step 2/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. HemL subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.3.8" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000268">
        <property type="protein sequence ID" value="KKO18468.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18468">
        <property type="protein sequence ID" value="KKO18468"/>
        <property type="gene ID" value="BROFUL_02851"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3527"/>
    <dbReference type="UniPathway" id="UPA00251">
        <property type="reaction ID" value="UER00317"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042286">
        <property type="term" value="F:glutamate-1-semialdehyde 2,1-aminomutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006782">
        <property type="term" value="P:protoporphyrinogen IX biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00610">
        <property type="entry name" value="OAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00375">
        <property type="entry name" value="HemL_aminotrans_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004639">
        <property type="entry name" value="4pyrrol_synth_GluAld_NH2Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000521">
        <property type="entry name" value="Transaminase_4ab_Lys_Orn"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00713">
        <property type="entry name" value="hemL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00600">
        <property type="entry name" value="AA_TRANSFER_CLASS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 7" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6 7" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="4 7 8" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="7">
        <location>
            <position position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008981"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00375"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18468.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="430" mass="46279" checksum="1A403356193B2656" modified="2015-11-11" version="1">MSKIILEKSKNAFDKAQSFIPGGVNSPVRAFGAVGGTPIFIKSGAGCRLTDVDGNTYVDYVGSWGPLILGHAEPRIVKKIHDAVANGTSYGAPTETEIQLAQLIQEAMPSIERVRMVNSGTEATMSAIRLARGFTRRDAVIKFEGCYHGHVDSLLIQAGSGATTLGTPTSPGIPQDFVKHTISLPYNDIDAVNEVCARRGKEIACIIVEAVAGNMGVVLPKKGYLEGLREITKKHGIVLIFDEVMTGFRVAHGGVQSIYNITPDLTTLGKIIGGGLPVGAYGGKKEIMDSISPVGPVYQAGTLSGNPVAMTAGIATLEILRDSAIYKTLEEKSKRLAAGMEQACRDARVPAYHTRIGSMLCTFFTDRPVTDYATAMKSDTKRYAKFFHGMLERGFYFAPSQFEAVFVSTVHGEKEIDATVDAFRDVIKDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URF5</accession>
    <name>A0A0M2URF5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Acetyl coenzyme A synthase alpha subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03113</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000286">
        <property type="protein sequence ID" value="KKO18215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18215">
        <property type="protein sequence ID" value="KKO18215"/>
        <property type="gene ID" value="BROFUL_03113"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.261">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016102">
        <property type="entry name" value="Succinyl-CoA_synth-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52210">
        <property type="entry name" value="SSF52210"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="104" mass="11879" checksum="76533D0ECD830173" modified="2015-11-11" version="1">MTAEVIGEISNHTEKPVVTSFMGGKRIEASLKVMCQRKVPNYSFPEKAISAVEAMHKYTLWRKKPIPEIKRIPVQREEVVSVFKKVRPAQRQSLGEDEAKQVID</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URR0</accession>
    <name>A0A0M2URR0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02987</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000281">
        <property type="protein sequence ID" value="KKO18330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18330">
        <property type="protein sequence ID" value="KKO18330"/>
        <property type="gene ID" value="BROFUL_02987"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="159" mass="17925" checksum="11507C64EAF579F1" modified="2015-11-11" version="1">MKPKRLQSITSSGILLSIAVFAVFFTGCTPGRLGLRNMTAVSRYFDADVNTVWNAVDQAMTGIQVEIKDMEKGLLRTQWIKGWSTTKSTGLITGGEWQERYRLTIQVTGEQAKTYVSMQAQLEEKAPGGSRAYRWNRTVSDGTIERDYLQRIEKILNVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URW4</accession>
    <name>A0A0M2URW4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nucleotidyltransferase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02714</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000251">
        <property type="protein sequence ID" value="KKO18597.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18597">
        <property type="protein sequence ID" value="KKO18597"/>
        <property type="gene ID" value="BROFUL_02714"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002934">
        <property type="entry name" value="Polymerase_NTP_transf_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01909">
        <property type="entry name" value="NTP_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NTP_transf_2" evidence="1">
        <location>
            <begin position="11"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18597.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="108" mass="12384" checksum="458134F79A1730EC" modified="2015-11-11" version="1">MTVKTGKNIIPKIVKKIKEEYQPEKIVLFGSYAYGKPSKDSDIDLLIIKESNKRRIDRFCEVRKILRDIKGISIQPVVLTKDELNKRIKMGDDFIKGILAEGKVLHGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US24</accession>
    <name>A0A0M2US24_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02662</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000244">
        <property type="protein sequence ID" value="KKO18637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18637">
        <property type="protein sequence ID" value="KKO18637"/>
        <property type="gene ID" value="BROFUL_02662"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="47" mass="5743" checksum="EC18B26580B93953" modified="2015-11-11" version="1" fragment="single">RWGEMNFVKSTKRYQERQHEKACFSGEMKKYLKKRGEKLQNSRAHLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USU7</accession>
    <name>A0A0M2USU7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03242</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000296">
        <property type="protein sequence ID" value="KKO18071.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18071">
        <property type="protein sequence ID" value="KKO18071"/>
        <property type="gene ID" value="BROFUL_03242"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18071.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="76" mass="8574" checksum="0F39BDB8FED65C25" modified="2015-11-11" version="1">MSERLLRFTRNDNVQCGAIKVQIAVIARVLSEAISRFHNEELVAAVPRYKFSLEKVSPGIVFRTYCGYYSCICGGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT05</accession>
    <name>A0A0M2UT05_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02110</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000211">
        <property type="protein sequence ID" value="KKO19183.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19183">
        <property type="protein sequence ID" value="KKO19183"/>
        <property type="gene ID" value="BROFUL_02110"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19183.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="151" mass="17175" checksum="6A7A1CA5D9F292FF" modified="2015-11-11" version="1">MVDNFILTRRQALCYVRSAVQIAGLSIAILALLICTSLISPLYPAPVQNNRVQDIIDNSTITRIQKPIAIRTDRETLEYFIEHVEELAKHGGAFKKKELILEDRGNRRYGIHMPLKHVTGEFELVEWQPQTAVYLGHGNARSFLTFQALLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT41</accession>
    <name>A0A0M2UT41_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DctA-YdbH domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03159</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000290">
        <property type="protein sequence ID" value="KKO18151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18151">
        <property type="protein sequence ID" value="KKO18151"/>
        <property type="gene ID" value="BROFUL_03159"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021730">
        <property type="entry name" value="DctA-YdbH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11739">
        <property type="entry name" value="DctA-YdbH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="domain" description="DctA-YdbH" evidence="2">
        <location>
            <begin position="630"/>
            <end position="789"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF11739"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="844" mass="94805" checksum="8D94C78B4B3F4606" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT63</accession>
    <name>A0A0M2UT63_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CinA-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02048</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CinA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19248">
        <property type="protein sequence ID" value="KKO19248"/>
        <property type="gene ID" value="BROFUL_02048"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2553"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.980.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.950.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00226_B">
        <property type="entry name" value="CinA_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036653">
        <property type="entry name" value="CinA-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008136">
        <property type="entry name" value="CinA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041424">
        <property type="entry name" value="CinA_KH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008135">
        <property type="entry name" value="Competence-induced_CinA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036425">
        <property type="entry name" value="MoaB/Mog-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02464">
        <property type="entry name" value="CinA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18146">
        <property type="entry name" value="CinA_KH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142433">
        <property type="entry name" value="SSF142433"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00199">
        <property type="entry name" value="PncC_domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CinA_KH" evidence="3">
        <location>
            <begin position="83"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="domain" description="CinA" evidence="2">
        <location>
            <begin position="160"/>
            <end position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF18146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="317" mass="34314" checksum="51325A75E4E62E97" modified="2015-11-11" version="1">MHLQKYFTNRHASRKDEYRRQHLIPEGAAALDNDQGTATGFAVRHAEKELVCLPGVPGEMQSMLNKYLETSARHRTRKGCSLTKNVHTFGVSERTVEDAVKDCRACAEHLKAITLVHNGVVTIHIHATATERNKAVKMLDTMERKLQKKLGYAVFGSGEETLEDAVFALLKKRNKTIAVAESCTGGLVSDKLTNISGISQVFFQGVVAYSNKAKVDMLGVPEKLIMKHGAVSSPVAKAMATGIKKKASADIGVGITGIAGPTGATPGKPVGLVYLAVAEQGRVRMKKCRFRGSRTDVKNFSANTALDMVRLTLLAVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT65</accession>
    <name>A0A0M2UT65_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C</fullName>
            <shortName evidence="1">Asp/Glu-ADT subunit C</shortName>
            <ecNumber evidence="1">6.3.5.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">gatC</name>
        <name evidence="2" type="ORF">BROFUL_03125</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O + L-aspartyl-tRNA(Asn) + L-glutamine = ADP + 2 H(+) + L-asparaginyl-tRNA(Asn) + L-glutamate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:14513"/>
            <dbReference type="Rhea" id="RHEA-COMP:9674"/>
            <dbReference type="Rhea" id="RHEA-COMP:9677"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:78515"/>
            <dbReference type="ChEBI" id="CHEBI:78516"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O + L-glutamine + L-glutamyl-tRNA(Gln) = ADP + H(+) + L-glutamate + L-glutaminyl-tRNA(Gln) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:17521"/>
            <dbReference type="Rhea" id="RHEA-COMP:9681"/>
            <dbReference type="Rhea" id="RHEA-COMP:9684"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:78520"/>
            <dbReference type="ChEBI" id="CHEBI:78521"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Heterotrimer of A, B and C subunits.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the GatC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.-" evidence="1"/>
    <dbReference type="EMBL" id="LAQJ01000287">
        <property type="protein sequence ID" value="KKO18176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18176">
        <property type="protein sequence ID" value="KKO18176"/>
        <property type="gene ID" value="BROFUL_03125"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050566">
        <property type="term" value="F:asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050567">
        <property type="term" value="F:glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006450">
        <property type="term" value="P:regulation of translational fidelity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00122">
        <property type="entry name" value="GatC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003837">
        <property type="entry name" value="Asp/Glu-ADT_csu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036113">
        <property type="entry name" value="Asp/Glu-ADT_sf_sub_c"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15004">
        <property type="entry name" value="PTHR15004"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02686">
        <property type="entry name" value="Glu-tRNAGln"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141000">
        <property type="entry name" value="SSF141000"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00135">
        <property type="entry name" value="gatC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="95" mass="10950" checksum="8FE5D593C9555423" modified="2015-11-11" version="1">MQIDKKDIEYIANLSRIDLSEIEKETFVYQLRDILSYIEKLNRLNTETVRPLSSAVTATNVFRDDTLESSLPFEDTQMNAPAVHGVFFKVPKVIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT83</accession>
    <name>A0A0M2UT83_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02024</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000206">
        <property type="protein sequence ID" value="KKO19268.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19268">
        <property type="protein sequence ID" value="KKO19268"/>
        <property type="gene ID" value="BROFUL_02024"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19268.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="48" mass="5560" checksum="19AA43D2C89FEBB4" modified="2015-11-11" version="1">MTHKIGTVEMDDAPLTIRIIFQCVTFSSVLFGKPMKFYRCRSVRHANI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTA8</accession>
    <name>A0A0M2UTA8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetyl-CoA decarbonylase/synthase complex subunit delta</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02443</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000232">
        <property type="protein sequence ID" value="KKO18850.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18850">
        <property type="protein sequence ID" value="KKO18850"/>
        <property type="gene ID" value="BROFUL_02443"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016041">
        <property type="entry name" value="Ac-CoA_synth_d_su_TIM-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011005">
        <property type="entry name" value="Dihydropteroate_synth-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03599">
        <property type="entry name" value="CdhD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51717">
        <property type="entry name" value="SSF51717"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CdhD" evidence="1">
        <location>
            <begin position="27"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03599"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18850.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="319" mass="35003" checksum="2E57A9EF57FA7A49" modified="2015-11-11" version="1">MEIPNVADKWSGTVNEIILGATKDKGGTRTQTITVGGAKSIPFMDFEGSPGQKPVVAMDVYDVPPEDWPETLTKPFADVLHDPAQWAKKCVEQYGADLICLKLEGIHPDKGNKTAEQTVKTVKSILAAVGVPLIIWGCEHDEKDNEIMPKVSQAAKGECCLMGVVTQDNYKTLTATCLADGHALITLAPVDINIAKQVNILVSEMDFPLNRIVMFQSTGALGYGLEYTYSIQERERLAALTGDKMMSMPVICDVGHEAWRTKESKSDDKEVPQWGTRDERGPMWEAITAVGLLQSGVDIIRMNHPKAVATVKKCIDRLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTD9</accession>
    <name>A0A0M2UTD9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative dolichyl-phosphate mannose synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02426</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000231">
        <property type="protein sequence ID" value="KKO18880.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18880">
        <property type="protein sequence ID" value="KKO18880"/>
        <property type="gene ID" value="BROFUL_02426"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="8"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18880.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="249" mass="29286" checksum="821F4D6B4A1A6A3D" modified="2015-11-11" version="1">MYRKKILIAIPVFNESAVFHIVQQVKYFDLDVLVIDDGSTGRLQRELAKVENIRMIVHSRNLGYGKAIINAFQYAIRNHYDYLLTIDGDGQHDPMEIRGFLQEIPFYSFDILSGSRYFFSREADKDAPRERYIINRKITAILNRITGFHLTDSFCGFKAYKVEKIKLLHLTEYGYGMPLQLWMQAWKAGLLIREIPVKLIYKDPTKRFHGILENPDTRMQYYKTIIRKELAGTAYHNARESRTQKTVRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTQ4</accession>
    <name>A0A0M2UTQ4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02942</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000277">
        <property type="protein sequence ID" value="KKO18366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18366">
        <property type="protein sequence ID" value="KKO18366"/>
        <property type="gene ID" value="BROFUL_02942"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3643"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001610">
        <property type="entry name" value="PAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13426">
        <property type="entry name" value="PAS_9"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00086">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HAMP" evidence="3">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="2">
        <location>
            <begin position="107"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="2">
        <location>
            <begin position="233"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="1">
        <location>
            <begin position="287"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="2">
        <location>
            <begin position="361"/>
            <end position="404"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="404" mass="46743" checksum="4C9932E497D92B2A" modified="2015-11-11" version="1">MDIKREDEIGGLANSFNTMAKSLDEKTREVVESEKRYRGMFNSIKEGVYQSEPGANGVFTFINKAGAEILGYSAPEEVIGTKVKDIYVDQEDRRRLCEKLEKDGVWREFVSLCKRKNGDSFYAERTSNMLRDEKGNPTDIYGVFRDISERKKAEQEITESEKRYRLLFDSIKEGVYQSEPGPDGAFTWVNQAGAEILGYRSPEEVIGTKVKDVYVNPDDRIKLLEKLAKDGVWKGFVSFCKRKNGERFYMERTSNLVVDEKGKAVRIDGIFRDITERKKLEEELKESERHHRQLLNSLKDGIYQCEPTDEGVFTWVNQAGAEILGYSSPEEVIGTRVKDLYVNPDDRKELLEKLEKEGVWRDFTSYCKRKNGERFISERTCNLVRDENGKPIRIEGVFRDITER</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTW2</accession>
    <name>A0A0M2UTW2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Ribonuclease Y</fullName>
            <shortName evidence="5">RNase Y</shortName>
            <ecNumber evidence="5">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rny</name>
        <name evidence="8" type="ORF">BROFUL_02226</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Endoribonuclease that initiates mRNA decay.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the RNase Y family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19045.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19045">
        <property type="protein sequence ID" value="KKO19045"/>
        <property type="gene ID" value="BROFUL_02226"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2779"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004521">
        <property type="term" value="F:endoribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006402">
        <property type="term" value="P:mRNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00335">
        <property type="entry name" value="RNase_Y"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006675">
        <property type="entry name" value="HDIG_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004087">
        <property type="entry name" value="KH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004088">
        <property type="entry name" value="KH_dom_type_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036612">
        <property type="entry name" value="KH_dom_type_1_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017705">
        <property type="entry name" value="Ribonuclease_Y"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022711">
        <property type="entry name" value="RNase_Y_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12826:SF15">
        <property type="entry name" value="PTHR12826:SF15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01966">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00013">
        <property type="entry name" value="KH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12072">
        <property type="entry name" value="RNase_Y_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00322">
        <property type="entry name" value="KH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54791">
        <property type="entry name" value="SSF54791"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00277">
        <property type="entry name" value="HDIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03319">
        <property type="entry name" value="RNase_Y"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51831">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2 5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="3 5 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="1 5" id="KW-0540">Nuclease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="domain" description="HD" evidence="7">
        <location>
            <begin position="334"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="61"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19045.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="518" mass="58434" checksum="DD6F69E08E986477" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTX0</accession>
    <name>A0A0M2UTX0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Beta-phosphoglucomutase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02018</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000206">
        <property type="protein sequence ID" value="KKO19262.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19262">
        <property type="protein sequence ID" value="KKO19262"/>
        <property type="gene ID" value="BROFUL_02018"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006439">
        <property type="entry name" value="HAD-SF_hydro_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041492">
        <property type="entry name" value="HAD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023198">
        <property type="entry name" value="PGP-like_dom2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13419">
        <property type="entry name" value="HAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01509">
        <property type="entry name" value="HAD-SF-IA-v3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19262.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="219" mass="25027" checksum="CC234213A7DC2FBA" modified="2015-11-11" version="1">MDGVLVDSMSYHAEAWDIVLKTAGISIDKKIIYELEGANCRQVIDIILRQHNQIPTETEIRDLGRKKMEVFELIERVRPFDGMPELLETLKLKYQLAVVSGSNKKTVQTTLNTFFPDTFKVIVDGEETRIGKPSPEPYLRAIEKLGIPKNHCLVIENAPLGIRSAKGAGLRCIAITTYLSREFLKEADFIVDDHRELRKYLEREAERENDKGYNHVNTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTZ1</accession>
    <name>A0A0M2UTZ1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01755</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000182">
        <property type="protein sequence ID" value="KKO19528.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19528">
        <property type="protein sequence ID" value="KKO19528"/>
        <property type="gene ID" value="BROFUL_01755"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037187">
        <property type="entry name" value="DnaK_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000962">
        <property type="entry name" value="Znf_DskA_TraR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020458">
        <property type="entry name" value="Znf_DskA_TraR_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01258">
        <property type="entry name" value="zf-dskA_traR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109635">
        <property type="entry name" value="SSF109635"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01102">
        <property type="entry name" value="ZF_DKSA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51128">
        <property type="entry name" value="ZF_DKSA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="DksA C4-type" evidence="5">
        <location>
            <begin position="48"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="dksA C4-type" evidence="4">
        <location>
            <begin position="91"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00510"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="126" mass="14267" checksum="46F5603352E9556B" modified="2015-11-11" version="1">MKEEFAQFKKLLLSLREKLVGKVDSMQDEALKRSRQDASGDLSNVPIHMADVGTDNYERDLMIELIQSGEESLRNIDTALEKIEEGTFGACELCGKKINRERLKALPYAKLCIDCQRDEETDSGLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU45</accession>
    <name>A0A0M2UU45_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01946</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000199">
        <property type="protein sequence ID" value="KKO19347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19347">
        <property type="protein sequence ID" value="KKO19347"/>
        <property type="gene ID" value="BROFUL_01946"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021747">
        <property type="entry name" value="DUF3313"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11769">
        <property type="entry name" value="DUF3313"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="258" mass="28427" checksum="9549A503D3FFF4CB" modified="2015-11-11" version="1">MRRRKSLVTHITVSCGCILLGATLLGIPLGCKTAPAPDAGFLQEPEKMAPKKERFPFDRVWVKPDAQREDYDYLVIAPVNTEYLMENTGWRAANPGNDDLEESAHKLAQYTEEKFCEAFQKDERPGWKLVSSPGPRTVVLELAIVELVPSKAAFGALRLAAPAMGPAGIVVGAGSAAAGGRPSVAIEGRLKDGVTGETLFMFADRKEAQMRIIDLKAVTWWGHAKDIITDWANECVELVKTPKDYQVKERGMFTLKPW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU52</accession>
    <name>A0A0M2UU52_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Cytokinin riboside 5'-monophosphate phosphoribohydrolase</fullName>
            <ecNumber evidence="1">3.2.2.n1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01700</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LOG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.2.n1" evidence="1"/>
    <dbReference type="EMBL" id="LAQJ01000176">
        <property type="protein sequence ID" value="KKO19593.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19593">
        <property type="protein sequence ID" value="KKO19593"/>
        <property type="gene ID" value="BROFUL_01700"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2105"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009691">
        <property type="term" value="P:cytokinin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005269">
        <property type="entry name" value="LOG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031100">
        <property type="entry name" value="LOG_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03641">
        <property type="entry name" value="Lysine_decarbox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00730">
        <property type="entry name" value="TIGR00730"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0203">Cytokinin biosynthesis</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="266" mass="30193" checksum="DAAC5B0CFB40818E" modified="2015-11-11" version="1">MNHPDRSIAAEPAYHNQIFLDSDDGRPLRILAEYLEPLYRLRREGIYDTIVFFGSARMKEDGPLGQYYKDARLLARLLTEWSRGLSGSRRFVICSGGGGGIMEAANRGAADADGSTIGFNIGLPYEQRPNPYVTPSLLFEFHYFFMRKLWFSHLARAIIVFPGGFGTLDEFMEMLTLAQTEKIDRDILILLYGTEYWKEVINFDSLVKHGMINAEDLNLIHRVDTVQAAFEVLKNCLPKEKEGVCPAIAKAKFSKPRKEDTKHGFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU58</accession>
    <name>A0A0M2UU58_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Co/Zn/Cd resistance protein CzcA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">czcA</name>
        <name evidence="2" type="ORF">BROFUL_01934</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000197">
        <property type="protein sequence ID" value="KKO19362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19362">
        <property type="protein sequence ID" value="KKO19362"/>
        <property type="gene ID" value="BROFUL_01934"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2405"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001036">
        <property type="entry name" value="Acrflvin-R"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32063">
        <property type="entry name" value="PTHR32063"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00873">
        <property type="entry name" value="ACR_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="189" mass="21437" checksum="09EE255EE1419708" modified="2015-11-11" version="1">MINRLIELCLRNRFLVICFYLLVIFGGIFGLKNINMDVIPDVGENQCIVFTDWPGRSPQDVEDQVTYPLTVNLLGVPGVKVIRSQSGFGFSMIFIIFKDNVEFYWARSRVLERLNFIQQLLPKDVTPRLGPDATGLGQIFWYTVEGEGYDRGTTALRSGLVHPLPIECRRGCIRGGCGRRFCQTVSGRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU62</accession>
    <name>A0A0M2UU62_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">50S ribosomal protein L17</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01894</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the bacterial ribosomal protein bL17 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19367">
        <property type="protein sequence ID" value="KKO19367"/>
        <property type="gene ID" value="BROFUL_01894"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2363"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1030.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000456">
        <property type="entry name" value="Ribosomal_L17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036373">
        <property type="entry name" value="Ribosomal_L17_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14413">
        <property type="entry name" value="PTHR14413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01196">
        <property type="entry name" value="Ribosomal_L17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64263">
        <property type="entry name" value="SSF64263"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00059">
        <property type="entry name" value="L17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01167">
        <property type="entry name" value="RIBOSOMAL_L17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1 3 5" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU000660"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000661"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="182" mass="20273" checksum="AD9555BBF3B4C899" modified="2015-11-11" version="1">MRGRHLSRTGAHRKALRQNITNSLFMHGRIITTLEKAKETRSFAEKVLTLAKKGLSKKDSDRPSYVHCYRQVLARLRNADVTRKLFGEGAWRESGGIAQRFANRNGGYTRILKLSGTRLGVLSGSSVGKIPVLEYRMEGADRKLRMLGRRLNDNASRVIFELVAGTAEMQSSDAVKPTVTTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU65</accession>
    <name>A0A0M2UU65_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative heme protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02766</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000261">
        <property type="protein sequence ID" value="KKO18536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18536">
        <property type="protein sequence ID" value="KKO18536"/>
        <property type="gene ID" value="BROFUL_02766"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3422"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023155">
        <property type="entry name" value="Cyt_c-552/4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036280">
        <property type="entry name" value="Multihaem_cyt_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010177">
        <property type="entry name" value="Paired_CXXCH_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001440">
        <property type="entry name" value="TPR_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13435">
        <property type="entry name" value="Cytochrome_C554"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09699">
        <property type="entry name" value="Paired_CXXCH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00515">
        <property type="entry name" value="TPR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48695">
        <property type="entry name" value="SSF48695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0802">TPR repeat</keyword>
    <feature type="domain" description="Cytochrome_C554" evidence="4">
        <location>
            <begin position="223"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="domain" description="Paired_CXXCH_1" evidence="3">
        <location>
            <begin position="388"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="635"/>
            <end position="668"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="703"/>
            <end position="736"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF09699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="829" mass="94032" checksum="F722B81A6FF43A81" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUB1</accession>
    <name>A0A0M2UUB1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02719</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000252">
        <property type="protein sequence ID" value="KKO18586.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18586">
        <property type="protein sequence ID" value="KKO18586"/>
        <property type="gene ID" value="BROFUL_02719"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18586.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="207" mass="23797" checksum="838E7028399F1876" modified="2015-11-11" version="1">MNRIDNLLFFKSNLDDTLRNQSGQIAAEVDSIPKDQLLATPEDDIVDHIYSSIKIEPIVLHEDSKEMEQHETKIDVSGYREQYVSVDRGPIYVPGVKVVVSIPYTGNPSLWNLKPNRSQSVFPRSDIRQPNRDGIGYLDIVIELPVDEQREKFRQRLDDELKSIRFYLDSQKSQVEMFNSTAPKNILIAIQARKERLKTQDGIADLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUB9</accession>
    <name>A0A0M2UUB9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative geranylgeranyl reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01673</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19638">
        <property type="protein sequence ID" value="KKO19638"/>
        <property type="gene ID" value="BROFUL_01673"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="414"/>
            <end position="436"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="446" mass="49258" checksum="6B1816FD196786B4" modified="2015-11-11" version="1">MILHDGARIAIIGGGPAGSFFSIFASKLARDMGKALDFTIYERKSFVSHGASGCNMCAGVVSESLVQNLALEGINLPATVVRWGIESYFFHIEGGSVEIKSSRLRQRGIATVFRGGGPAGSLAKGIQSFDDFLLQKAVEHGAHVKRSLIDGICMEGEKPRLYSGKNMLQECDLLVGAFGIKASTGKMYEDLGSGYKVPPTIKTAQSEIELGSDWVVHRFGHAIHIFLLRIPGIKFVSVIPKGDYITVSVLGKDPKLDHIKAFLGHHSMKKFLPSGFQVPEKFCHCFPKISVGAARKPFANRTVFVGDASSSRLYKDGIGSAYITAKAAAHTALLEGIGEKDFQEHYLPTCKSLNRDNLFGQFLFAANHLMSIVSPISRSYFNIVQREQKNLQKNTPYSDILWDMFTGSRFYKDIFLRALHPSFVVYLFSAMVIYPVKKVFFSFKNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUC9</accession>
    <name>A0A0M2UUC9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02083</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000209">
        <property type="protein sequence ID" value="KKO19205.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19205">
        <property type="protein sequence ID" value="KKO19205"/>
        <property type="gene ID" value="BROFUL_02083"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19205.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="95" mass="10524" checksum="6983FE9B4BB675C3" modified="2015-11-11" version="1">MNFEKFSKVYPEYRYVFAGDSGQADALTAQKMITSEPAGEAARVITTFIHDLRESDADVKSVSPAFRSLKPDIVIRKTSPQAGELSYSGTTSMRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUH0</accession>
    <name>A0A0M2UUH0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Pyruvoyl-dependent arginine decarboxylase AaxB</fullName>
            <ecNumber evidence="4">4.1.1.19</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">speA</name>
        <name evidence="9" type="ORF">BROFUL_01799</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H(+) + L-arginine = agmatine + CO2</text>
            <dbReference type="Rhea" id="RHEA:17641"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:32682"/>
            <dbReference type="ChEBI" id="CHEBI:58145"/>
            <dbReference type="EC" id="4.1.1.19"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>pyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the pyruvoyl-dependent arginine decarboxylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.19" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000188">
        <property type="protein sequence ID" value="KKO19487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19487">
        <property type="protein sequence ID" value="KKO19487"/>
        <property type="gene ID" value="BROFUL_01799"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008792">
        <property type="term" value="F:arginine decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006527">
        <property type="term" value="P:arginine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01404">
        <property type="entry name" value="PvlArgDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016104">
        <property type="entry name" value="Pyr-dep_his/arg-deCO2ase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016105">
        <property type="entry name" value="Pyr-dep_his/arg-deCO2ase_sand"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002724">
        <property type="entry name" value="Pyruvoyl-dep_arg_deCO2ase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40438">
        <property type="entry name" value="PTHR40438"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01862">
        <property type="entry name" value="PvlArgDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005216">
        <property type="entry name" value="Pyruvoyl-dep_arg_deCO2ase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01170">
        <property type="entry name" value="Pyruvoyl-dependent_arginine_de"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56271">
        <property type="entry name" value="SSF56271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00286">
        <property type="entry name" value="TIGR00286"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="7 9" id="KW-0456">Lyase</keyword>
    <keyword evidence="8" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000009"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012426"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00014727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023317"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="181" mass="20010" checksum="76C21E18D69F8ED2" modified="2015-11-11" version="1">MMIPRLVFFTKGVGKHKDKLQSFELSLRKAGIEKCNLVRVSSIFPPNCKIVTKEQGTAMLKGGQVIFCVMSENSTNEPNRMISASVGMAAPAEHEHYGYLSEHHAFGETEEKSGDYAEDLAATMLATTLGIEFDSAKNYDERKEIYRMSGKIVKTRNITQAARGDKNGLWTTVVAAAVFIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUI7</accession>
    <name>A0A0M2UUI7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Probable endonuclease 4</fullName>
            <ecNumber evidence="7">3.1.21.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Endodeoxyribonuclease IV</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Endonuclease IV</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7 9" type="primary">nfo</name>
        <name evidence="9" type="ORF">BROFUL_02658</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic (AP) sites, generating a 3'-hydroxyl group and a 5'-terminal sugar phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>Endonucleolytic cleavage to 5'-phosphooligonucleotide end-products.</text>
            <dbReference type="EC" id="3.1.21.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="7">Binds 3 Zn(2+) ions.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the AP endonuclease 2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.21.2" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000243">
        <property type="protein sequence ID" value="KKO18641.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18641">
        <property type="protein sequence ID" value="KKO18641"/>
        <property type="gene ID" value="BROFUL_02658"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008833">
        <property type="term" value="F:deoxyribonuclease IV (phage-T4-induced) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00019">
        <property type="entry name" value="AP2Ec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00152">
        <property type="entry name" value="Nfo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001719">
        <property type="entry name" value="AP_endonuc_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018246">
        <property type="entry name" value="AP_endonuc_F2_Zn_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21445">
        <property type="entry name" value="PTHR21445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00518">
        <property type="entry name" value="AP2Ec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00587">
        <property type="entry name" value="nfo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00731">
        <property type="entry name" value="AP_NUCLEASE_F2_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51432">
        <property type="entry name" value="AP_NUCLEASE_F2_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6 7" id="KW-0234">DNA repair</keyword>
    <keyword evidence="7 9" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0540">Nuclease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="8">
        <location>
            <begin position="16"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="65"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="105"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="142"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="176"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="179"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="213"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="226"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="228"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="258"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005340"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18641.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="301" mass="33759" checksum="8D01A0B24C8E67B9" modified="2015-11-11" version="1">MLGCTVSTVGGLPKGFSWARKWGCECIQIYVTLSRRWNVSALSSEEVLKFKAAWQDSPVKKVVAHVPYLVNLASSNKDLQQKSRERLKTELSRARQFGVHFLILHPGSCGDSNKGDGMKRTIETLNTISNTRGNPKTQILLETMAGQGTSIGSAFEEIACLLEEMNHPEFMGVCFDTAHVFAAGYDIRGYKGYEAVLREFDRIVGIRQIKAIHINDSRTGLGSRSDRHACIGEGKLGLEMFHALMRDPRFLNIPKILEIPERDTRSEDNLRLLQKLQSIPDRLPKSQGLRKKLMRKESDAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUJ8</accession>
    <name>A0A0M2UUJ8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02607</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18656">
        <property type="protein sequence ID" value="KKO18656"/>
        <property type="gene ID" value="BROFUL_02607"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="40" mass="4703" checksum="B1FFA6F45A6B2AB4" modified="2015-11-11" version="1">MRIYDSENNVGKISVVVHLLHSPHGRNLFFSMEYNRQNSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUM2</accession>
    <name>A0A0M2UUM2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">50S ribosomal protein L21</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rplU</name>
        <name evidence="6" type="ORF">BROFUL_01980</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 5">This protein binds to 23S rRNA in the presence of protein L20.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Part of the 50S ribosomal subunit. Contacts protein L20.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4 5">Belongs to the bacterial ribosomal protein bL21 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19320.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19320">
        <property type="protein sequence ID" value="KKO19320"/>
        <property type="gene ID" value="BROFUL_01980"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01363">
        <property type="entry name" value="Ribosomal_L21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036164">
        <property type="entry name" value="L21-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028909">
        <property type="entry name" value="L21p-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001787">
        <property type="entry name" value="Ribosomal_L21"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21349">
        <property type="entry name" value="PTHR21349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00829">
        <property type="entry name" value="Ribosomal_L21p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141091">
        <property type="entry name" value="SSF141091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00061">
        <property type="entry name" value="L21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4 5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4 5" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19320.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="105" mass="11945" checksum="6CE6DA02212DE521" modified="2015-11-11" version="1">MYAIVKDRGKQYKVRVGERCLIDLKADAQAGQILEFNNVLVCSNEEGKATLGADTNTNAKVIAEVEGIKKSAKCMTVKFRRRKESLTRRGHREKYTRIKIKEIIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUQ2</accession>
    <name>A0A0M2UUQ2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03112</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000286">
        <property type="protein sequence ID" value="KKO18214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18214">
        <property type="protein sequence ID" value="KKO18214"/>
        <property type="gene ID" value="BROFUL_03112"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="84" mass="9429" checksum="84596057B94B80D9" modified="2015-11-11" version="1">MFWDASAIVPRCIDGSQIKVVKGILKKDSSMTAGWGSVVEYHSAFARLRRDNVLKHSEEDQTKHFLAILTSTWGEIGPRGNIRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUR7</accession>
    <name>A0A0M2UUR7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01892</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19365.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19365">
        <property type="protein sequence ID" value="KKO19365"/>
        <property type="gene ID" value="BROFUL_01892"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008138">
        <property type="term" value="F:protein tyrosine/serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006470">
        <property type="term" value="P:protein dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000340">
        <property type="entry name" value="Dual-sp_phosphatase_cat-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026067">
        <property type="entry name" value="Dual_phosphatase_23"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029021">
        <property type="entry name" value="Prot-tyrosine_phosphatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016130">
        <property type="entry name" value="Tyr_Pase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003595">
        <property type="entry name" value="Tyr_Pase_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000387">
        <property type="entry name" value="Tyr_Pase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020422">
        <property type="entry name" value="TYR_PHOSPHATASE_DUAL_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23339:SF26">
        <property type="entry name" value="PTHR23339:SF26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00782">
        <property type="entry name" value="DSPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00195">
        <property type="entry name" value="DSPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00404">
        <property type="entry name" value="PTPc_motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52799">
        <property type="entry name" value="SSF52799"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00383">
        <property type="entry name" value="TYR_PHOSPHATASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50056">
        <property type="entry name" value="TYR_PHOSPHATASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50054">
        <property type="entry name" value="TYR_PHOSPHATASE_DUAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0904">Protein phosphatase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tyrosine-protein phosphatase" evidence="3">
        <location>
            <begin position="6"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="domain" description="TYR_PHOSPHATASE_2" evidence="4">
        <location>
            <begin position="76"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19365.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="155" mass="17649" checksum="0A4F4A9F6D72CDB6" modified="2015-11-11" version="1">MKMPRNFSWVIEDEIAGMARPISLVSDLEFLKDNGIEAIVSLTEVPLPITFIEEFGFEYKHIPVADLTSPTQSQIDEFVTFVNDLISSKKKTVVHCDAGIGRTGTMLACYLVSKGHTAQKAMIEVRKRRPGSIETREQEYTIVKYEERLLKRRRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUZ2</accession>
    <name>A0A0M2UUZ2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">FGE-sulfatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01652</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19617.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19617">
        <property type="protein sequence ID" value="KKO19617"/>
        <property type="gene ID" value="BROFUL_01652"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2040"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016187">
        <property type="entry name" value="CTDL_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005532">
        <property type="entry name" value="SUMF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042095">
        <property type="entry name" value="SUMF_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03781">
        <property type="entry name" value="FGE-sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56436">
        <property type="entry name" value="SSF56436"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FGE-sulfatase" evidence="1">
        <location>
            <begin position="14"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19617.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="212" mass="24210" checksum="5A87E336AD3F584A" modified="2015-11-11" version="1">MTMSVSIMNEKDGSEMVFVPSGEFIMGEERKVVSIEAFYIDKFPVTNSQYRKFLGEAGSQEPLFWNNERFNQPAQPVVGISWKDAVSYAKWAGKRLPREVEWEKAARGTDGREYPWGNIQPDSMKAVYNQDPNTGAPAPVGSRKEGVSPYGCYDMAGNVWEWCEDWYEEAKFRVVRGGSWLNHHYILRSAYRSCSYPEGKDNNVGFRCVKDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUZ3</accession>
    <name>A0A0M2UUZ3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02472</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18811">
        <property type="protein sequence ID" value="KKO18811"/>
        <property type="gene ID" value="BROFUL_02472"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008964">
        <property type="entry name" value="Invasin/intimin_cell_adhesion"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49373">
        <property type="entry name" value="SSF49373"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644024" evidence="1">
        <location>
            <begin position="26"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="129" mass="13859" checksum="7E5E83C884372807" modified="2015-11-11" version="1">MKFLKYKGLCLSFIWMSIIFLCSCAQTRSYLPYEEGVRIVVSPHRLSVHSGSEDNVFIQVLDKEGGPLFGIEVTAVSTVPTVATITPESLTNPAGKATFTVSGVSPGTTQMVFSAAGQKAMIEVVFVGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV76</accession>
    <name>A0A0M2UV76_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02397</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000229">
        <property type="protein sequence ID" value="KKO18896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18896">
        <property type="protein sequence ID" value="KKO18896"/>
        <property type="gene ID" value="BROFUL_02397"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="73" mass="8100" checksum="81C00D85D9ADB44A" modified="2015-11-11" version="1">MPYVIKDRVSVIARVLSEAISRLHNGDLVAAVLHYVLMEDKGGAFFDMANARELTALLMSTTALYIKRACRMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVH5</accession>
    <name>A0A0M2UVH5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Big-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01453</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the intimin/invasin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000148">
        <property type="protein sequence ID" value="KKO19832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19832">
        <property type="protein sequence ID" value="KKO19832"/>
        <property type="gene ID" value="BROFUL_01453"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039448">
        <property type="entry name" value="Beta_helix"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003344">
        <property type="entry name" value="Big_1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008964">
        <property type="entry name" value="Invasin/intimin_cell_adhesion"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022441">
        <property type="entry name" value="Para_beta_helix_rpt-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006626">
        <property type="entry name" value="PbH1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13229">
        <property type="entry name" value="Beta_helix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02369">
        <property type="entry name" value="Big_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00634">
        <property type="entry name" value="BID_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00710">
        <property type="entry name" value="PbH1"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49373">
        <property type="entry name" value="SSF49373"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="SSF51126"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03804">
        <property type="entry name" value="para_beta_helix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51127">
        <property type="entry name" value="BIG1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Big-1" evidence="3">
        <location>
            <begin position="406"/>
            <end position="499"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="490"/>
            <end position="558"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="502"/>
            <end position="554"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="568"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="568" mass="59419" checksum="57AB9B6D57A07990" modified="2015-11-11" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVK2</accession>
    <name>A0A0M2UVK2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01421</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000146">
        <property type="protein sequence ID" value="KKO19862.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19862">
        <property type="protein sequence ID" value="KKO19862"/>
        <property type="gene ID" value="BROFUL_01421"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644107" evidence="1">
        <location>
            <begin position="28"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19862.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="140" mass="15712" checksum="D014CC31FE16FCC9" modified="2015-11-11" version="1">MNQKRTMLLGACILFATTMFMSSDICASENEKEPGWNIGVTGKKTVYVAHWIHTPENCPGRNEDGAMTLRKFWEGRKMAEEKGITILGAYATVTEHDFFIILEASDFSSVVEFFLPLVPSQTGKIVPVLTMDECLRMVSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVL9</accession>
    <name>A0A0M2UVL9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02259</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000223">
        <property type="protein sequence ID" value="KKO19036.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19036">
        <property type="protein sequence ID" value="KKO19036"/>
        <property type="gene ID" value="BROFUL_02259"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19036.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="69" mass="8095" checksum="9282355062D3ADD3" modified="2015-11-11" version="1">MAQKAILMHPLTIDKPMVLIPVEEYITLLEEAGYTPTPKLDREITQARERFRKGKSISWETLKRELKQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVR0</accession>
    <name>A0A0M2UVR0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_01356</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000140">
        <property type="protein sequence ID" value="KKO19927.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19927">
        <property type="protein sequence ID" value="KKO19927"/>
        <property type="gene ID" value="BROFUL_01356"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025662">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025943">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025944">
        <property type="entry name" value="Sigma_54_int_dom_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00158">
        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00675">
        <property type="entry name" value="SIGMA54_INTERACT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00676">
        <property type="entry name" value="SIGMA54_INTERACT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00688">
        <property type="entry name" value="SIGMA54_INTERACT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="8">
        <location>
            <begin position="6"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="7">
        <location>
            <begin position="145"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="6">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19927.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="449" mass="50019" checksum="492E6F22C74C72E1" modified="2015-11-11" version="1">MSKKPNLILTDDEDTFRNIMTKELSRMGYNVVSCASGAEALKNIEERDFDIVILDINMPVMNGIELLKKVKALDSTTEVIVLTGQGTIENAVQAIKLGAYDYVTKPCRLTELQILLQKALEKRQLNKENVHLKRLVKDAQKTPLLIGNGAAITAVHKMVEKIAASDAIVLLQGESGTGKELVAQSIHQHSPRANRPCVVVNCATLQETLLESELFGHVKGAFTGATELRVGLFEIADGGTIFLDEIGELSVNTQAKLLRVVQSGEIRRVGDNRIITVDTRIIAATNKNLAAEVKNGRFREDLYFRLNVITVSLPPLRERREDIPLLIDHFLRNFCRKREKKHVLPEALTAMTRYSWPGNVRELENTVERLVVLAEGEDISVDDLPENIRGISPFRNAAGCPEGTLSDVEKKHILRVLHEKQCNKTLAAEALGISLKTLYNKLKVYHIDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVW9</accession>
    <name>A0A0M2UVW9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01058</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20208.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20208">
        <property type="protein sequence ID" value="KKO20208"/>
        <property type="gene ID" value="BROFUL_01058"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20208.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="73" mass="8104" checksum="284598D2EC42B222" modified="2015-11-11" version="1">MFGPISNRKSFAFISFVPLAEAISTLEPWSPAPGSTVFTARMLEMDTLASCNFFSMVDLLISLLQEECLELLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVX3</accession>
    <name>A0A0M2UVX3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01266</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO19997.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19997">
        <property type="protein sequence ID" value="KKO19997"/>
        <property type="gene ID" value="BROFUL_01266"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="3"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19997.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="122" mass="14054" checksum="0C99084DA7D5C818" modified="2015-11-11" version="1">MKTILIIEDDQEMQEFYKDMLQGEQFTVTLASNADEGLKKAKEKNYDLVILDILMEGVTGDRIFALLRKDSRYRNVPVIMASALDEKTYRCFQALGNVSFLEKPFNKGKLFAEIAKRLQPLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVZ9</accession>
    <name>A0A0M2UVZ9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">SAF domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02124</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19141">
        <property type="protein sequence ID" value="KKO19141"/>
        <property type="gene ID" value="BROFUL_02124"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044780">
        <property type="term" value="P:bacterial-type flagellum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017585">
        <property type="entry name" value="Flag_basal_body_FlgA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039246">
        <property type="entry name" value="Flagellar_FlgA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013974">
        <property type="entry name" value="SAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36307">
        <property type="entry name" value="PTHR36307"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13144">
        <property type="entry name" value="ChapFlgA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00858">
        <property type="entry name" value="SAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03170">
        <property type="entry name" value="flgA_cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0574">Periplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="domain" description="SAF" evidence="4">
        <location>
            <begin position="198"/>
            <end position="260"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00858"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="323" mass="36226" checksum="A7001B51C0D82D85" modified="2015-11-11" version="1">MNLTYVIRLSAIIFLFVHTAVAEEIRIDLKEKVTLPEKQIVLNDIASLSCNNPFLLERVGNIQLGNTPWPGNVRKIERDSLAVRLVDEGIDMSEVAYSDVAFSLVSVESTTVTGDEILRVAREYLMSSLSRPEDEMIIESDRSIPDKLLPANEGDIHLEVAQVETNKDRGNIQLIVRILINNSLYLKVPVYFHVRVYETVVASRKKIDRNDTLTSDNLTISRMETTKLFKTTFVKMEDLIGKRASRSILPNTPITPEIVDNSPAIKKGDLVKVFVHSGNLHVVTKGVAKEDGCVGKIIRVKNLDSHKELYGRVEDSTAVKIVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWD1</accession>
    <name>A0A0M2UWD1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02475</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18814">
        <property type="protein sequence ID" value="KKO18814"/>
        <property type="gene ID" value="BROFUL_02475"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032585">
        <property type="entry name" value="DUF4912"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16258">
        <property type="entry name" value="DUF4912"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="51"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18814.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="274" mass="30987" checksum="4D2F91840C42390C" modified="2015-11-11" version="1">MDKEILKEIFLLTLEVIKVFCEMLWKKTKGFFCLIWDRFFGVTDISSPERGEEQVWGDTGEDTWPVSPKGSLARTDNPQPPGEVKEVVRTPSISELPEDYGDNRVVLMVRDTECLFAYWELRKEILDNILNTLGSMAHSAKIVLRVYDVTDVLFNGNNAHTYFDIEVTDGTRSWYIHTGKPNRSFYADIGFITPNGTFRLIARSNPVKTPPSGVSEVVDETWMSIEALYAEISAPDEFGSSASVRKRVHKGWQEILKEGVSSPEAPRVSAISKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWF0</accession>
    <name>A0A0M2UWF0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Survival protein MgtC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">mgtC</name>
        <name evidence="8" type="ORF">BROFUL_01116</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the MgtC/SapB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20157">
        <property type="protein sequence ID" value="KKO20157"/>
        <property type="gene ID" value="BROFUL_01116"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1384"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003416">
        <property type="entry name" value="MgtC/SapB/SrpB/YhiD_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33778">
        <property type="entry name" value="PTHR33778"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02308">
        <property type="entry name" value="MgtC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01837">
        <property type="entry name" value="MGTCSAPBPROT"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="43"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="81"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="107"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="129"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="233" mass="25929" checksum="0C75E0CB0ED8CCD4" modified="2015-11-11" version="1">MRCLLSIMESVDNPVGKLLIATVLGGIIGWERERRGRPAGLRTHILVCIGVTLMMVVSEHIFEKYKALAADSIIRVDPARIAAQVITGIGFLGAGTILRFKTTVRGLTTAASLWVVAGIGLAVGSSCYIPAMLTTLITLFALFLGPLFEREIRRDTYRILKVCVSGTEPNFESITEILKNNSIELQHYEFERDLMKNEVQYNINVRYKDEAAVPKVCDDITKSIKEIIKLGWE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWJ7</accession>
    <name>A0A0M2UWJ7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01347</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000139">
        <property type="protein sequence ID" value="KKO19955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19955">
        <property type="protein sequence ID" value="KKO19955"/>
        <property type="gene ID" value="BROFUL_01347"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644061" evidence="1">
        <location>
            <begin position="26"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="150" mass="16868" checksum="573FBC8A8C3B5EE3" modified="2015-11-11" version="1">MLKLLFSIALSCLVIAWLKAENIHADNPNPLNKTVQYSPGPMIDIDRRPDTEDILRTPLSKIEYITSQVTGIGYGRPGTEEYLNAEILIKLKDDTNIYGFSLVFTDSYGHGTSKAIFDTLLAAFVNDLKVEILYYKKNGAKQLVRVTVRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWP5</accession>
    <name>A0A0M2UWP5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02321</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18929.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18929">
        <property type="protein sequence ID" value="KKO18929"/>
        <property type="gene ID" value="BROFUL_02321"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012902">
        <property type="entry name" value="N_methyl_site"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07963">
        <property type="entry name" value="N_methyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="184"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="185"/>
            <end position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18929.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="254" mass="28889" checksum="44BA7A4BA4243AE8" modified="2015-11-11" version="1">MKQEEGFTLFELLIALFIGTLLIMAGAYAIRAGLFSMERDEAWFNESAREKAVYDFFWQQASSLRIQEVHKKNSKKDEEDKSREKTKTVYFTGERDFLTFVSPLSLTKHYGQGLIIASYKIAINDKGLWDLTYSERNVNPAILRTTSEESNSLLRAGKDATVFLKDCDKILFAYLDDADAELDDEAAEGRERENEKPDDTSDAVHGNFQNAGVIEGAGLQWKEEMKKKAPLAIKLFVSKRGKEQELVLPIMAMY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWQ7</accession>
    <name>A0A0M2UWQ7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Mop domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00785</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000099">
        <property type="protein sequence ID" value="KKO20498.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20498">
        <property type="protein sequence ID" value="KKO20498"/>
        <property type="gene ID" value="BROFUL_00785"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015689">
        <property type="term" value="P:molybdate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004606">
        <property type="entry name" value="Mop_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005116">
        <property type="entry name" value="Transp-assoc_OB_typ1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03459">
        <property type="entry name" value="TOBE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00638">
        <property type="entry name" value="Mop"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51866">
        <property type="entry name" value="MOP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mop" evidence="3">
        <location>
            <begin position="68"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51866"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20498.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="135" mass="14675" checksum="7936594C83DBB302" modified="2015-11-11" version="1">MANKLCGTIVAITQGHIHAHIKILWKEIPLNVIITRASCEDMHLLAGDTISVLIKGTDIMIAKAFSGMLSARNRARGMVRQIIQGDVLSKIYVESQGDMLYAIITNASLEEMGIKEGDEITAIVKSTELILSKGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWS9</accession>
    <name>A0A0M2UWS9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Probable glycine dehydrogenase (decarboxylating) subunit 2</fullName>
            <ecNumber evidence="4">1.4.4.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Glycine cleavage system P-protein subunit 2</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Glycine decarboxylase subunit 2</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Glycine dehydrogenase (aminomethyl-transferring) subunit 2</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">gcvPB</name>
        <name evidence="6" type="ORF">BROFUL_01302</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 4">The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 4">
            <text>(R)-N(6)-lipoyl-L-lysyl-[glycine-cleavage complex H protein] + glycine + H(+) = (R)-N(6)-(S(8)-aminomethyldihydrolipoyl)-L-lysyl-[glycine-cleavage complex H protein] + CO2</text>
            <dbReference type="Rhea" id="RHEA:24304"/>
            <dbReference type="Rhea" id="RHEA-COMP:10494"/>
            <dbReference type="Rhea" id="RHEA-COMP:10495"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:83099"/>
            <dbReference type="ChEBI" id="CHEBI:83143"/>
            <dbReference type="EC" id="1.4.4.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="4">The glycine cleavage system is composed of four proteins: P, T, L and H. In this organism, the P 'protein' is a heterodimer of two subunits.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the GcvP family. C-terminal subunit subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.4.4.2" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20030">
        <property type="protein sequence ID" value="KKO20030"/>
        <property type="gene ID" value="BROFUL_01302"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1607"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004375">
        <property type="term" value="F:glycine dehydrogenase (decarboxylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019464">
        <property type="term" value="P:glycine decarboxylation via glycine cleavage system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00613">
        <property type="entry name" value="GDC-P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00713">
        <property type="entry name" value="GcvPB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023012">
        <property type="entry name" value="GcvPB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020581">
        <property type="entry name" value="GDC_P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11773">
        <property type="entry name" value="PTHR11773"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02347">
        <property type="entry name" value="GDC-P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="471"/>
            <end position="502"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="481"/>
            <end position="502"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="4">
        <location>
            <position position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003788"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00033655"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00713"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="502" mass="55499" checksum="5EC499346930432C" modified="2015-11-11" version="1">MDQSEPLIFEKSSPGRRCFIPPVSDVPEIPITNQLPQKMLRKQEVNLPEVSEIDVVRHFTRLSQKNFCVDTNFYPLGSCTMKYNPKINEDAARLEGFTKLHPYQPTEQCQGILELLYALEQMLITITGMDAFTLQPAAGAHGELTGMLIIRAYLEKQGEKRHKIIIPDSAHGTNPASAALCGYEVESIRSNTDGLIDVNKLKNAFNRDTAAVMITNPNTLGLFEKEILEICKIAHNAGGLVYCDGANMNALLGIARPGDMGIDILHLNLHKTFSTPHGGGGPGAGPIGVTEKLKPFLPVPRIESGKESTIVDRGKDTSATGSIPTTYVLNYQYPDSIGRVRAFYGHIGMMIRTYTYLLSLGKEGVGKVGEFSILNANYLRHKLIKYYDIPYGKTCMHEFVISAKKQRQQGASALDIAKRLLDCGFHSPTIYFPLIVEEALMIEPTETESPDTLDAFADVMIQIARDIEQRPGVVRDTPKNTPVGRPDEVKAAREPVLKWKNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWZ4</accession>
    <name>A0A0M2UWZ4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">O-Antigen ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00893</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000109">
        <property type="protein sequence ID" value="KKO20372.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20372">
        <property type="protein sequence ID" value="KKO20372"/>
        <property type="gene ID" value="BROFUL_00893"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007016">
        <property type="entry name" value="O-antigen_ligase-related"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04932">
        <property type="entry name" value="Wzy_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="2 3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="23"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="53"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="109"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="137"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="159"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="186"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="292"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="332"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="355"/>
            <end position="375"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20372.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="390" mass="45170" checksum="6CA18ECE0E19019D" modified="2015-11-11" version="1">MIVYMLFHIKSYVFGENELYECITRIIVPFILCLILLNFGKNSIDNAIYLTKSFAIFLVISLLFSFVGIIYFGEYISLRYSLYGRYYDTLIGNNISQPSHLLLAGLSSASYLFGYQVAGGTTLFICLFFIDSGYWRVLWGISLLLALIVLVYTAERATVPAIFAGISIFVLYSFRDKKILKKIISFSFIIIFFCIITVFLQFLFNDFKTLGTFKKIYQRHISGKTIFERFTQSDIYTRLEMQEACLEIALENPQGLFFKGMKEESWGRLATAKGYNVVPDEKGEYALVHNGYLRIIMYFGWVIGLLIFYVFLSIIDKIRYLNFANNQIIARYGKGITSTFVTLSTHALFHNDSLFTIERTTWVAFILIFVWYRLARLDNDHLIARQVNII</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWZ8</accession>
    <name>A0A0M2UWZ8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 8">D-3-phosphoglycerate dehydrogenase</fullName>
            <ecNumber evidence="8">1.1.1.95</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_00707</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L-serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 8">
            <text>(2R)-3-phosphoglycerate + NAD(+) = 3-phosphooxypyruvate + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:12641"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:18110"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58272"/>
            <dbReference type="EC" id="1.1.1.95"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(R)-2-hydroxyglutarate + NAD(+) = 2-oxoglutarate + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:49612"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15801"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.1.1.399"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4 8">Amino-acid biosynthesis; L-serine biosynthesis; L-serine from 3-phospho-D-glycerate: step 1/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 8">Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.95" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20588.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20588">
        <property type="protein sequence ID" value="KKO20588"/>
        <property type="gene ID" value="BROFUL_00707"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.899"/>
    <dbReference type="UniPathway" id="UPA00135">
        <property type="reaction ID" value="UER00196"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004617">
        <property type="term" value="F:phosphoglycerate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006564">
        <property type="term" value="P:L-serine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029009">
        <property type="entry name" value="ASB_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006139">
        <property type="entry name" value="D-isomer_2_OHA_DH_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029752">
        <property type="entry name" value="D-isomer_DH_CS1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006140">
        <property type="entry name" value="D-isomer_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006236">
        <property type="entry name" value="PGDH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045626">
        <property type="entry name" value="PGDH_ASB_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00389">
        <property type="entry name" value="2-Hacid_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02826">
        <property type="entry name" value="2-Hacid_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01842">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19304">
        <property type="entry name" value="PGDH_inter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143548">
        <property type="entry name" value="SSF143548"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01327">
        <property type="entry name" value="PGDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00065">
        <property type="entry name" value="D_2_HYDROXYACID_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0520">NAD</keyword>
    <keyword evidence="8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 8" id="KW-0718">Serine biosynthesis</keyword>
    <feature type="domain" description="ACT" evidence="9">
        <location>
            <begin position="454"/>
            <end position="526"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000646"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00003800"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005216"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00005854"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00021582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023299"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU363003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO20588.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="526" mass="56175" checksum="B6F1135093F6BC5E" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX03</accession>
    <name>A0A0M2UX03_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Signal recognition particle receptor FtsY</fullName>
            <shortName evidence="5">SRP receptor</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">ftsY</name>
        <name evidence="8" type="ORF">BROFUL_01170</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the signal recognition particle protein translocation system, which is composed of SRP and FtsY.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Peripheral membrane protein</topology>
            <orientation evidence="5">Cytoplasmic side</orientation>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the GTP-binding SRP family. FtsY subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000126">
        <property type="protein sequence ID" value="KKO20095.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20095">
        <property type="protein sequence ID" value="KKO20095"/>
        <property type="gene ID" value="BROFUL_01170"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1449"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031226">
        <property type="term" value="C:intrinsic component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006614">
        <property type="term" value="P:SRP-dependent cotranslational protein targeting to membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00920">
        <property type="entry name" value="FtsY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013822">
        <property type="entry name" value="Signal_recog_particl_SRP54_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004390">
        <property type="entry name" value="SR_rcpt_FtsY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036225">
        <property type="entry name" value="SRP/SRP_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000897">
        <property type="entry name" value="SRP54_GTPase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042101">
        <property type="entry name" value="SRP54_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43134:SF7">
        <property type="entry name" value="PTHR43134:SF7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00448">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02881">
        <property type="entry name" value="SRP54_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00962">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00963">
        <property type="entry name" value="SRP54_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47364">
        <property type="entry name" value="SSF47364"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00064">
        <property type="entry name" value="ftsY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00300">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="8" id="KW-0132">Cell division</keyword>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 5" id="KW-0675">Receptor</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SRP54" evidence="7">
        <location>
            <begin position="419"/>
            <end position="432"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="25"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="252"/>
            <end position="259"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="334"/>
            <end position="338"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00920"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS00300"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20095.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="446" mass="48979" checksum="B5D7572561C196A2" modified="2015-11-11" version="1">MEHPSKKEKHTAGEKKRETPKTLVSQESGRKQSPDAAQQQGNAAGKPRRSFWTRIKTFTFEPPKKVIVEGDTIRLVSVSSETEILIAEKGVSATTEELAVDVTEAPDDKGEARSQTLITPEELAFPLPEIILGEEPVAIQEEIPVVEERLKKSLEKTRTRFWSRLKGLFAFRRGIDESVLEELEDILIGADIGAKAVQSLMHELREAWKSKTITETSQIHDFIKDKLKESLRFLQTTINYAPAPPTVILVVGVNGVGKTTAIAKLANTFIQDGKKVMVAASDTFRAAAVEQLDIWSKRIGAEIVKHQTGSDPAAVAYDALEASIARGIDVVIVDTAGRLHTHENLMNELSKMKRVISKRIPGAPHEVLMVLDATTGQNALSQAKLFKQAVDVTGIFLAKLDGTAKGGFVLGMRNEINIPVKYVGIGEKADDIEKFDPDAFVNALFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX23</accession>
    <name>A0A0M2UX23_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Ammonium transporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_00717</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the ammonia transporter channel (TC 1.A.11.2) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20598.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20598">
        <property type="protein sequence ID" value="KKO20598"/>
        <property type="gene ID" value="BROFUL_00717"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.908"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008519">
        <property type="term" value="F:ammonium transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029020">
        <property type="entry name" value="Ammonium/urea_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001905">
        <property type="entry name" value="Ammonium_transpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018047">
        <property type="entry name" value="Ammonium_transpt_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024041">
        <property type="entry name" value="NH4_transpt_AmtB-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00909">
        <property type="entry name" value="Ammonium_transp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00836">
        <property type="entry name" value="amt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01219">
        <property type="entry name" value="AMMONIUM_TRANSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0924">Ammonia transport</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="29"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="66"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="119"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="150"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="189"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="228"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="257"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="288"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="313"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="343"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="383"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="domain" description="Ammonium_transp" evidence="9">
        <location>
            <begin position="30"/>
            <end position="434"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU362002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO20598.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="437" mass="46884" checksum="73A9F226C94A2C15" modified="2015-11-11" version="1">MFRQVFAGDPGGADTYSESIQGLKFSVNFAWTLLSAFLVFNMQAGFTFLGAGFMQKKNTLNYLSMSFIDFCVGALVFWLIGFGLMFGGSGLAPGLSWGNRFIGYSGFLLLGDSYDVSTAVLWMFQIMFAATSCTIVTGAVAERFKFHAHIIYSVFVCGVLYPVFGHWMWGKGWLELLPFGVGSRDFAGSGLVHGVGGLTAFIAAWMIGPRYGKYNPDGSPNVIHGHNLLYIVIGTLTLIFGWFGFNAGSTLAVTDLRVSIIAVNTFLAAASGAVTLLYLSFRITKKSDIIMTCNGALAGCVAITASGAYVPPWAAIIIGIVAALITRISLYTIETKLKIDDPVGAVSVHGANGLWGLLSVGIFSDGTYGGVKGLIVGSGWQLLAQFISCITLIAWCFSVGFLFFFVLKRTVGLRVPVNVERSGIDVYEHGTSCYPGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX48</accession>
    <name>A0A0M2UX48_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00621</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20638">
        <property type="protein sequence ID" value="KKO20638"/>
        <property type="gene ID" value="BROFUL_00621"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="38" mass="4247" checksum="8FDB186C49148E46" modified="2015-11-11" version="1">MVEVDKKGMPIQVEVEQSSGYQPLIGRIKRSEALEIST</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX98</accession>
    <name>A0A0M2UX98_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00575</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000080">
        <property type="protein sequence ID" value="KKO20698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20698">
        <property type="protein sequence ID" value="KKO20698"/>
        <property type="gene ID" value="BROFUL_00575"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003346">
        <property type="entry name" value="Transposase_20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002525">
        <property type="entry name" value="Transposase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01548">
        <property type="entry name" value="DEDD_Tnp_IS110"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02371">
        <property type="entry name" value="Transposase_20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DEDD_Tnp_IS110" evidence="2">
        <location>
            <begin position="14"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="245"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="424"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01548"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="424" mass="48716" checksum="4C1770E5843D4580" modified="2015-11-11" version="1" fragment="single">MEGDHTMEQTMIYVGIDWADDHHDIVITDDSAKTLDQFRIDHTCDGFALLHSHIAHHQASPSLVLVAIETSRGLLLHELLQKGYTVYAINPKAVNRYKDRHVLSKAKSDVLDALSLGHLLRTDRHLFRPLMPLPEDYRLLDRLCGDLRKAVDEKSRILNQVISCSKEFYPKALEMFSLNSQIFIDFLKAFPDHDTLSACKKKTFLAFLRKHRYSYPAKAEELWKTIQSPSLQPDKVTARSGKLRLGMLLGQLENLKEHITHYEREIQHILDHLPESTPIKSLPGVGERLAPELVAILGPNSKDGHHRFQASAEIAKLSGCVPVVRESGKWRTVSLRYACVKPLRRTFRDWAFTSINHSRWARAFYDYHKQRNQNHSTICATSLKNGSKSFLLFGLREQPMMKRCIFKISRQKMSPGLWLCSLDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXA2</accession>
    <name>A0A0M2UXA2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ubiquinone biosynthesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01038</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20190">
        <property type="protein sequence ID" value="KKO20190"/>
        <property type="gene ID" value="BROFUL_01038"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004147">
        <property type="entry name" value="ABC1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03109">
        <property type="entry name" value="ABC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0830">Ubiquinone</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="506"/>
            <end position="524"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="530"/>
            <end position="557"/>
        </location>
    </feature>
    <feature type="domain" description="ABC1" evidence="2">
        <location>
            <begin position="101"/>
            <end position="346"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="562" mass="64025" checksum="EE5021CCB06EA820" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXG4</accession>
    <name>A0A0M2UXG4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02142</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19159.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19159">
        <property type="protein sequence ID" value="KKO19159"/>
        <property type="gene ID" value="BROFUL_02142"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19159.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="320" mass="37551" checksum="6F3ED37A367C50F4" modified="2015-11-11" version="1">MYSQRNLSKLTIDDFARLFGTTADDIDEYCKGLVDTMDFSFEQLSDIERDKLILNILKRIDLADLPVSGEERKPEWEKGWADNLRDFINSGYDLSKLVPKYFKKNIPVRLNREYVMPVDPDFVLNCTRVFRNWIFRKYLKDVDSIYEFGCGPATHLAFLAGIYPGKKLYGLDWAKPSQEIIRLLAKHFGWQIEGRHFDFFAPDVNLHLDENSAVYTFGALEQIGGNHKAFLQFLLKESFKLCINVECISEFYNQDYLPDYLAFKYHKRRNYLDGYLTRLQELEAEGKIIILAMHHQQFGNIYDDSHSYVVWKLRKIPATS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXG6</accession>
    <name>A0A0M2UXG6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">KDO kinase (2-keto-3-deoxy-D-manno-octulosonic acid)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">kdkA</name>
        <name evidence="1" type="ORF">BROFUL_01629</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000170">
        <property type="protein sequence ID" value="KKO19651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19651">
        <property type="protein sequence ID" value="KKO19651"/>
        <property type="gene ID" value="BROFUL_01629"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="303" mass="35419" checksum="E99018764FEAA701" modified="2015-11-11" version="1">MLTKSMTLPAFSLLKQGNTTLLVKDQYRELLFNMVFHPETFEDKRKTSGTVKYGRGAYRTIPLSGNSRERLIIRNYRHGGLFGKLLGGIFYNENRPVNEVAINEIALQKDVLSAEVVAVIKRRLWGLFYTADFISREIPDAVDLIQLITESSGTFIQKFKRPVIRAIAGLLRNMHDAGIFHADLHLKNILVKHDSTGEFHAYIIDLDKSVVTEKLNIDKRMKNLLRLDRSVEKLRWLSGRTNTSLHQKMGFISRTDKIRFFRSYLLWGNALDKDWKKYLRQSHSRHAIHKLWWRIPRFFKIFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXH6</accession>
    <name>A0A0M2UXH6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Radical SAM core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_00984</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="6">Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000118">
        <property type="protein sequence ID" value="KKO20275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20275">
        <property type="protein sequence ID" value="KKO20275"/>
        <property type="gene ID" value="BROFUL_00984"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1233"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027596">
        <property type="entry name" value="AmmeMemoSam_rS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034457">
        <property type="entry name" value="Organic_radical-activating"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016431">
        <property type="entry name" value="Pyrv-formate_lyase-activ_prd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30352">
        <property type="entry name" value="PTHR30352"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004869">
        <property type="entry name" value="PflX_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01101">
        <property type="entry name" value="Uncharacterised_Radical_SAM_Su"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04337">
        <property type="entry name" value="AmmeMemoSam_rS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="4 6" id="KW-0408">Iron</keyword>
    <keyword evidence="5 6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="7">
        <location>
            <begin position="67"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="82"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="86"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="89"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR004869-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="336" mass="38286" checksum="9D702B8C35E307A6" modified="2015-11-11" version="1">MKEAMFFEKLGDDKVKCYLCRHHCIINEGKKGICRVRENRAGTLYSLVYRKLISENIDPIEKKPLFHFYPGSTALSVATVGCNFRCMNCQNYEISQLPEDQDSIAGKDIAPEKIVEDAVRNQCKSIAYTYTEPTIFFEYAYEIAKIASQQSVKNVFVTNGYITREALATIKPYLHAVNIDLKSFSSQTYKKIYGAQLEQVLDGIRSYKEMGIWIEITTLIIPEINDSASELRQIAGFIKSVGPEIPWHVSRFYPRYRLMGKPPTPVDTLKMARNIGLEVGLRYVYEGNVPGEGGENTYCYHCKRLLIKRYGYQILENDIVNLRCPSCNTTIDGIGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXK3</accession>
    <name>A0A0M2UXK3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">GIY-YIG domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00454</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000060">
        <property type="protein sequence ID" value="KKO20813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20813">
        <property type="protein sequence ID" value="KKO20813"/>
        <property type="gene ID" value="BROFUL_00454"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.569"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000305">
        <property type="entry name" value="GIY-YIG_endonuc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035901">
        <property type="entry name" value="GIY-YIG_endonuc_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01541">
        <property type="entry name" value="GIY-YIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82771">
        <property type="entry name" value="SSF82771"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50164">
        <property type="entry name" value="GIY_YIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GIY-YIG" evidence="1">
        <location>
            <begin position="1"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="85" mass="9764" checksum="889EE33886DFD437" modified="2015-11-11" version="1">MYLIRCNQGKLYTGITTDVERRFAEHTGNDKKGAKCLRGKAPLTLVMKKKIGSKRAALRIESRVKKLSKVRKEMFVEGKIKIREL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXN1</accession>
    <name>A0A0M2UXN1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00411</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000056">
        <property type="protein sequence ID" value="KKO20853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20853">
        <property type="protein sequence ID" value="KKO20853"/>
        <property type="gene ID" value="BROFUL_00411"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="183" mass="20754" checksum="D73F36B9F6E55EF4" modified="2015-11-11" version="1">MIKYRGVKSVILFIIFLVSHYPTFVSAREGHGHNTDTVITIKKQTYIHFQTILMGYQYIYSYMVKGGTGEISSLAQNLIDAATLGVQTEPEGPGQHMMQLVLEGAESLKNAKNVNERQESFTSIGNALFPFFKHWPNQLMRSRLKICRCKSGHQWLQPDNCPTACPYSLNKSSPCLMIEETIY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXN2</accession>
    <name>A0A0M2UXN2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4">N-(5'-phosphoribosyl)anthranilate isomerase</fullName>
            <shortName evidence="4">PRAI</shortName>
            <ecNumber evidence="2 4">5.3.1.24</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4 6" type="primary">trpF</name>
        <name evidence="6" type="ORF">BROFUL_02034</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>N-(5-phospho-beta-D-ribosyl)anthranilate = 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate</text>
            <dbReference type="Rhea" id="RHEA:21540"/>
            <dbReference type="ChEBI" id="CHEBI:18277"/>
            <dbReference type="ChEBI" id="CHEBI:58613"/>
            <dbReference type="EC" id="5.3.1.24"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 4">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 3/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the TrpF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.24" evidence="2 4"/>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19234.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19234">
        <property type="protein sequence ID" value="KKO19234"/>
        <property type="gene ID" value="BROFUL_02034"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2536"/>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00042"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004640">
        <property type="term" value="F:phosphoribosylanthranilate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000162">
        <property type="term" value="P:tryptophan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00405">
        <property type="entry name" value="PRAI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00135">
        <property type="entry name" value="PRAI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001240">
        <property type="entry name" value="PRAI_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044643">
        <property type="entry name" value="TrpF_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42894">
        <property type="entry name" value="PTHR42894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00697">
        <property type="entry name" value="PRAI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="SSF51366"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="4" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="4 6" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="domain" description="PRAI" evidence="5">
        <location>
            <begin position="4"/>
            <end position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012572"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19234.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="205" mass="22523" checksum="1BF700CBB4EE5067" modified="2015-11-11" version="1">MVKVKICGITNREDAQAAVDFGADALGFVFAKSSRRVTREQAKDIIERLPPFVSPVGVFVDEAVAAIKGICDFCGIHTVQLHGNEDPLDIHDLKGYTTIKAFRIKDEDDLACLSRYKPHAFLLDSYVKGVMGGTGMAFNWEIARQARNYGMIILSGGLTPENVTEAVRIVKPYAVDVSSGVESAPGKKSRELMKQFIMHAKFRGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXQ7</accession>
    <name>A0A0M2UXQ7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Two-component sensor kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02054</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19254.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19254">
        <property type="protein sequence ID" value="KKO19254"/>
        <property type="gene ID" value="BROFUL_02054"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013767">
        <property type="entry name" value="PAS_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00989">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PAS" evidence="1">
        <location>
            <begin position="22"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19254.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="164" mass="18216" checksum="B44935BD04489E1D" modified="2015-11-11" version="1">MAVENAFLYREANHRKILNENLLENIPCGVIAINSNGRINAFNKNAAKMLDMSSHDILGKDVKHIGSLFTDIILRTLKDKKTYEMREVVHPTTHLTYSVSTSFFDTSGEIGAVMIFSDISEIRKLQSSLSTVAEFEKKLKQLESRTSPSGIGTELGKMLVAQPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXX5</accession>
    <name>A0A0M2UXX5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00845</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000105">
        <property type="protein sequence ID" value="KKO20420.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20420">
        <property type="protein sequence ID" value="KKO20420"/>
        <property type="gene ID" value="BROFUL_00845"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20420.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="37" mass="4485" checksum="871A3DB6E53D729C" modified="2015-11-11" version="1">MLEFASTSALSKNEKLAYDYFKIKSKRLKKKMRRLNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXY7</accession>
    <name>A0A0M2UXY7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">FlgM domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01456</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000149">
        <property type="protein sequence ID" value="KKO19831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19831">
        <property type="protein sequence ID" value="KKO19831"/>
        <property type="gene ID" value="BROFUL_01456"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035890">
        <property type="entry name" value="Anti-sigma-28_factor_FlgM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031316">
        <property type="entry name" value="FlgM_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04316">
        <property type="entry name" value="FlgM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101498">
        <property type="entry name" value="SSF101498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FlgM" evidence="2">
        <location>
            <begin position="42"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="46"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="108" mass="12747" checksum="4004E4988E5D649F" modified="2015-11-11" version="1">MTIKDVSDASLHTRGVNLNYIEENQLRIKSNKEHQSEENKDDSIYISQEARKLEQTITDLKKLANEIPEVRHEKMEEIKQKIKEDFYDRPEVILQTAEKIMDVFGTKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXZ0</accession>
    <name>A0A0M2UXZ0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Cyclic nucleotide-gated potassium channel</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BROFUL_00558</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000077">
        <property type="protein sequence ID" value="KKO20722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20722">
        <property type="protein sequence ID" value="KKO20722"/>
        <property type="gene ID" value="BROFUL_00558"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.699"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008076">
        <property type="term" value="C:voltage-gated potassium channel complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005249">
        <property type="term" value="F:voltage-gated potassium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.350">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005821">
        <property type="entry name" value="Ion_trans_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028325">
        <property type="entry name" value="VG_K_chnl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027359">
        <property type="entry name" value="Volt_channel_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11537">
        <property type="entry name" value="PTHR11537"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00520">
        <property type="entry name" value="Ion_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="10 13" id="KW-0407">Ion channel</keyword>
    <keyword evidence="8" id="KW-0406">Ion transport</keyword>
    <keyword evidence="9 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0630">Potassium</keyword>
    <keyword evidence="5" id="KW-0631">Potassium channel</keyword>
    <keyword evidence="3" id="KW-0633">Potassium transport</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="20"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="62"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="92"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="149"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="191"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="216"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="domain" description="Ion_trans" evidence="12">
        <location>
            <begin position="30"/>
            <end position="244"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO20722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="277" mass="30978" checksum="9CE3519D733B6DE1" modified="2015-11-11" version="1">MKKIEPHLSEKTFRGKLFRVIYESGTIGGKLFNVTLISCIVISVLIVSLDSIESVSIRYGKALLYAEWVITILFSIEFALRITCVKKPLKYLFSFMGLVDLLSILPLYLSFFFTGTKYFVVIRTFRILRIFRILKMWNFVEASHQLTKALYISSIKIGVFILFLLVLVVIIGSLMHLIEGGKHGFDSIPHSIYWAIVTLTTVGYGDIAPKTPAGRLFASVIMLLGYGIIAVPTGIVTAELVKFTKIPHAKSVHSCPSCGKEGHDTDAHFCKFCGEKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXZ4</accession>
    <name>A0A0M2UXZ4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cold-shock protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00539</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000076">
        <property type="protein sequence ID" value="KKO20727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20727">
        <property type="protein sequence ID" value="KKO20727"/>
        <property type="gene ID" value="BROFUL_00539"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044238">
        <property type="term" value="P:primary metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006417">
        <property type="term" value="P:regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00552">
        <property type="entry name" value="RaiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036567">
        <property type="entry name" value="RHF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003489">
        <property type="entry name" value="RHF/RaiA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02482">
        <property type="entry name" value="Ribosomal_S30AE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69754">
        <property type="entry name" value="SSF69754"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0810">Translation regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="146" mass="16864" checksum="CABDBE6FF33E8E15" modified="2015-11-11" version="1">MILPLQITSRNLELTEAIESNIREHAEKLDKYYSRITSCRVMVEALPHRSLYNLRIDITVPGAEIVVKLDPNKDLYLAIRDAFRDICRKLEDFARRQRGDVKQHAEALRGLIKTLFSDQGYGFLARWMAARSISTSIVLRTMNLNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY48</accession>
    <name>A0A0M2UY48_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01926</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19399">
        <property type="protein sequence ID" value="KKO19399"/>
        <property type="gene ID" value="BROFUL_01926"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19399.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="54" mass="6513" checksum="3C199CD97833E8BF" modified="2015-11-11" version="1" fragment="single">FGKAERRLALESLQKLLNKNNFNVDFTKMHDRIVPFCNKFIVLFNGVIWCWIRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY84</accession>
    <name>A0A0M2UY84_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00747</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000095">
        <property type="protein sequence ID" value="KKO20525.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20525">
        <property type="protein sequence ID" value="KKO20525"/>
        <property type="gene ID" value="BROFUL_00747"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="29"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="70"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20525.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="91" mass="9642" checksum="EC1A1D0AEFCDD53A" modified="2015-11-11" version="1">MIDKLNQIITEKSEKIMTNQKVEGMVNNLGGVFCFVGAVVFGIMFIVCGASLMKTGKNYVVKPSAEEKKEAEAASEAAPAEEAAATEPSAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY85</accession>
    <name>A0A0M2UY85_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00458</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000060">
        <property type="protein sequence ID" value="KKO20817.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20817">
        <property type="protein sequence ID" value="KKO20817"/>
        <property type="gene ID" value="BROFUL_00458"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="51"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20817.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="149" mass="16528" checksum="9104A737EA602175" modified="2015-11-11" version="1">MRDLPADAFATAAKRLSVSEERYQILYEEFCSTFRAGQRVFILKITNGQRFLFVPYILFPITIGLGMLLIVFCANAVSGPERATNLVSPPGAGTTLHAAPEEPLPPETVQHMLREKGLFDSRRNPAGHGISHKYELQKNGRIVYDHASG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYB8</accession>
    <name>A0A0M2UYB8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative transcriptional regulator ExsB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01314</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000138">
        <property type="protein sequence ID" value="KKO19966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19966">
        <property type="protein sequence ID" value="KKO19966"/>
        <property type="gene ID" value="BROFUL_01314"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1626"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018317">
        <property type="entry name" value="QueC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42914">
        <property type="entry name" value="PTHR42914"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06508">
        <property type="entry name" value="QueC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="164" mass="18547" checksum="503C6701292C21BB" modified="2015-11-11" version="1">MNDLAIVLVSGGMDSCITAALARTQHELALLHVNYGQRTESRELKAFHDIASHYRVPKERILITSIDYLSKIGGSSLTDPRMNVQDAQVPAREIPTSYVPFRNTHLLTIAVSWGEVIGARKIFIGAVEQDNPGYPDCRPVYYEAFNNLVRWVPGQQRVSRWRRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYC5</accession>
    <name>A0A0M2UYC5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_01823</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000189">
        <property type="protein sequence ID" value="KKO19484.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19484">
        <property type="protein sequence ID" value="KKO19484"/>
        <property type="gene ID" value="BROFUL_01823"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2267"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013656">
        <property type="entry name" value="PAS_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025662">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025943">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025944">
        <property type="entry name" value="Sigma_54_int_dom_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08448">
        <property type="entry name" value="PAS_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00158">
        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01590">
        <property type="entry name" value="HTHFIS"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00675">
        <property type="entry name" value="SIGMA54_INTERACT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00676">
        <property type="entry name" value="SIGMA54_INTERACT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00688">
        <property type="entry name" value="SIGMA54_INTERACT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="8">
        <location>
            <begin position="4"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="7">
        <location>
            <begin position="261"/>
            <end position="490"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="6">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19484.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="571" mass="64982" checksum="C8B0B89599248766" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYD1</accession>
    <name>A0A0M2UYD1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Aconitate hydratase A</fullName>
            <ecNumber evidence="3">4.2.1.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Iron-responsive protein-like</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">RNA-binding protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BROFUL_00187</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>citrate = D-threo-isocitrate</text>
            <dbReference type="Rhea" id="RHEA:10336"/>
            <dbReference type="ChEBI" id="CHEBI:15562"/>
            <dbReference type="ChEBI" id="CHEBI:16947"/>
            <dbReference type="EC" id="4.2.1.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Carbohydrate metabolism; tricarboxylic acid cycle; isocitrate from oxaloacetate: step 2/2.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.3" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000020">
        <property type="protein sequence ID" value="KKO21083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21083">
        <property type="protein sequence ID" value="KKO21083"/>
        <property type="gene ID" value="BROFUL_00187"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.229"/>
    <dbReference type="UniPathway" id="UPA00223">
        <property type="reaction ID" value="UER00718"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003994">
        <property type="term" value="F:aconitate hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047780">
        <property type="term" value="F:citrate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.19.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.499.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015931">
        <property type="entry name" value="Acnase/IPM_dHydase_lsu_aba_1/3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001030">
        <property type="entry name" value="Acoase/IPM_deHydtase_lsu_aba"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015928">
        <property type="entry name" value="Aconitase/3IPM_dehydase_swvl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018136">
        <property type="entry name" value="Aconitase_4Fe-4S_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036008">
        <property type="entry name" value="Aconitase_4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006250">
        <property type="entry name" value="Aconitase_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000573">
        <property type="entry name" value="AconitaseA/IPMdHydase_ssu_swvl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00330">
        <property type="entry name" value="Aconitase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00694">
        <property type="entry name" value="Aconitase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00415">
        <property type="entry name" value="ACONITASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53732">
        <property type="entry name" value="SSF53732"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01342">
        <property type="entry name" value="acon_putative"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00450">
        <property type="entry name" value="ACONITASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01244">
        <property type="entry name" value="ACONITASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aconitase" evidence="11">
        <location>
            <begin position="7"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="domain" description="Aconitase_C" evidence="12">
        <location>
            <begin position="518"/>
            <end position="575"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00019378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00031081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00031977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00330"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO21083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="642" mass="69256" checksum="905570C4E65826B6" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYI0</accession>
    <name>A0A0M2UYI0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01761</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000182">
        <property type="protein sequence ID" value="KKO19534.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19534">
        <property type="protein sequence ID" value="KKO19534"/>
        <property type="gene ID" value="BROFUL_01761"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2183"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010620">
        <property type="entry name" value="SBBP_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06739">
        <property type="entry name" value="SBBP"/>
        <property type="match status" value="6"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19534.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="766" mass="81501" checksum="C610C70BCE8EC190" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYR5</accession>
    <name>A0A0M2UYR5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00514</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000071">
        <property type="protein sequence ID" value="KKO20755.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20755">
        <property type="protein sequence ID" value="KKO20755"/>
        <property type="gene ID" value="BROFUL_00514"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019993">
        <property type="entry name" value="RecB_nuclease_TM0106_put"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03491">
        <property type="entry name" value="TIGR03491"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20755.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="241" mass="27695" checksum="57F79748AC597A36" modified="2015-11-11" version="1">MAKMYFWKSRSGYTIVHRSSSLGSYSYEPTIIVGTHQVTKEQKLALLFVGYVLGQLQNKLPAVGTIMGADGQAYKVEMKSVDRTLMPTIETLRQWTGSVPYAPPSVILNKHCPACQYRKECLDQAEKADDLSLLERTTPKTIRKYHKKGIFTVTQLSYVFRPRRKRRRRAKAPVLFKFELQALALRTGIIYIQELPILLRSEVELFLDLEGIPDQHFHYLIGLLINEKGEPLLSFFLGRYP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYV9</accession>
    <name>A0A0M2UYV9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Putative ABC transporter ATP-binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_01638</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000171">
        <property type="protein sequence ID" value="KKO19649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19649">
        <property type="protein sequence ID" value="KKO19649"/>
        <property type="gene ID" value="BROFUL_01638"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015408">
        <property type="term" value="F:ABC-type ferric iron transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03259">
        <property type="entry name" value="ABC_Carb_Solutes_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015853">
        <property type="entry name" value="ABC_transpr_FbpC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="4"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="36"/>
            <end position="43"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="226"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="226" mass="25487" checksum="A929E18E78FAC3BA" modified="2015-11-11" version="1" fragment="single">MHKLQLFNVSKSFGPHTVLDNLSLEIFSNELFIILGSSGGGKTTLLLGIIGLQPFDSGRVIIDGVDVTNLSPGERNIGYVPQNYALFPNHTVFDNIAFGLRLRKVPKNIIQTRVRQFIDDFSLQGLEHHFPSQLSGGQMQRVALARALIIEPSLLLLDEPVSALDIETRQKIKAELKELQKKLHITMVYITHDQQETLEMADRLGILTRLSQFAPKKVYFWARVAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYZ7</accession>
    <name>A0A0M2UYZ7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_01584</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000167">
        <property type="protein sequence ID" value="KKO19704.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19704">
        <property type="protein sequence ID" value="KKO19704"/>
        <property type="gene ID" value="BROFUL_01584"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01948">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001633">
        <property type="entry name" value="EAL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035919">
        <property type="entry name" value="EAL_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001610">
        <property type="entry name" value="PAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00563">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13426">
        <property type="entry name" value="PAS_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00052">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00086">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141868">
        <property type="entry name" value="SSF141868"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50883">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="3">
        <location>
            <begin position="7"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="4">
        <location>
            <begin position="137"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="5">
        <location>
            <begin position="207"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="7">
        <location>
            <begin position="292"/>
            <end position="425"/>
        </location>
    </feature>
    <feature type="domain" description="EAL" evidence="6">
        <location>
            <begin position="434"/>
            <end position="688"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19704.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="717" mass="80866" checksum="D284ED48D09103C2" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ15</accession>
    <name>A0A0M2UZ15_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Riboflavin biosynthesis protein</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="11">Riboflavin kinase</fullName>
                <ecNumber evidence="11">2.7.1.26</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="11">Flavokinase</fullName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="11">FMN adenylyltransferase</fullName>
                <ecNumber evidence="11">2.7.7.2</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="11">FAD pyrophosphorylase</fullName>
            </alternativeName>
            <alternativeName>
                <fullName evidence="11">FAD synthase</fullName>
            </alternativeName>
        </domain>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BROFUL_00406</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2 11">
            <text>ATP + FMN + H(+) = diphosphate + FAD</text>
            <dbReference type="Rhea" id="RHEA:17237"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
            <dbReference type="EC" id="2.7.7.2"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>ATP + riboflavin = ADP + FMN + H(+)</text>
            <dbReference type="Rhea" id="RHEA:14357"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57986"/>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.26"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 11">Cofactor biosynthesis; FAD biosynthesis; FAD from FMN: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4 11">Cofactor biosynthesis; FMN biosynthesis; FMN from riboflavin (ATP route): step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the ribF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.26" evidence="11"/>
    <dbReference type="EC" id="2.7.7.2" evidence="11"/>
    <dbReference type="EMBL" id="LAQJ01000054">
        <property type="protein sequence ID" value="KKO20870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20870">
        <property type="protein sequence ID" value="KKO20870"/>
        <property type="gene ID" value="BROFUL_00406"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.507"/>
    <dbReference type="UniPathway" id="UPA00276">
        <property type="reaction ID" value="UER00406"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00277">
        <property type="reaction ID" value="UER00407"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003919">
        <property type="term" value="F:FMN adenylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008531">
        <property type="term" value="F:riboflavin kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006747">
        <property type="term" value="P:FAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009398">
        <property type="term" value="P:FMN biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02064">
        <property type="entry name" value="FAD_synthetase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015864">
        <property type="entry name" value="FAD_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023468">
        <property type="entry name" value="Riboflavin_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002606">
        <property type="entry name" value="Riboflavin_kinase_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015865">
        <property type="entry name" value="Riboflavin_kinase_bac/euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023465">
        <property type="entry name" value="Riboflavin_kinase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22749">
        <property type="entry name" value="PTHR22749"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06574">
        <property type="entry name" value="FAD_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01687">
        <property type="entry name" value="Flavokinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004491">
        <property type="entry name" value="FAD_Synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00904">
        <property type="entry name" value="Flavokinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82114">
        <property type="entry name" value="SSF82114"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00083">
        <property type="entry name" value="ribF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9 11" id="KW-0274">FAD</keyword>
    <keyword evidence="5 11" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="6 11" id="KW-0288">FMN</keyword>
    <keyword evidence="11" id="KW-0418">Kinase</keyword>
    <keyword evidence="8 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Flavokinase" evidence="12">
        <location>
            <begin position="182"/>
            <end position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRNR" id="PIRNR004491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM00904"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO20870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="317" mass="36234" checksum="C04097A224D2BCDE" modified="2015-11-11" version="1">METIYGVKTLTRKIPYPVATIGMFDGVHRGHKRIIEEVLHHALTKHGESVIITFNRHPKNVLENRPPSFITSLEHRLKLFSNLGVDHTVVIPFDKTFAHISAEDFIREIMVGWLGVKCIILGFNCRFGRDREGNIHLVRRLAATYGFEVYECPPAMYQGRVISSTAIRQAILNGELETAERMLGRPVSILGTVVRKSGRGKTLGYPTANLDLHHEVRPPRGVYGTKLCWAGHDYLALTNIGMRPTFAREPFTGEDERLEVEVHILDFHENIYGQNLEVQFLFKIRDEMPFTTSEELKSQIERDEEDLLKNARLHTIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ36</accession>
    <name>A0A0M2UZ36_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01071</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20221">
        <property type="protein sequence ID" value="KKO20221"/>
        <property type="gene ID" value="BROFUL_01071"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="76" mass="8659" checksum="1B3D0E49A21B6105" modified="2015-11-11" version="1">MISVKGIFDGKKVKFLEEVDINEPQEVIITFLGTSKDESLYQEIYKIAETSGSFDFLNAPEEDIYSDADLKVKYSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ46</accession>
    <name>A0A0M2UZ46_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01081</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20231.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20231">
        <property type="protein sequence ID" value="KKO20231"/>
        <property type="gene ID" value="BROFUL_01081"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010038">
        <property type="entry name" value="MoaD_arc-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016155">
        <property type="entry name" value="Mopterin_synth/thiamin_S_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003749">
        <property type="entry name" value="ThiS/MoaD-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02597">
        <property type="entry name" value="ThiS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54285">
        <property type="entry name" value="SSF54285"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01687">
        <property type="entry name" value="moaD_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20231.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="93" mass="10303" checksum="3ABD6F87C87E18C9" modified="2015-11-11" version="1">MAVTVRIPTPLRTLTKGADEVKAEGKNIKDIVDNLEATYKGIKERICDNDGQIRRFINFYLNDEDIRFMGNLNTPVKDGDHISIVPAIAGGNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ58</accession>
    <name>A0A0M2UZ58_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Cytosine-specific methyltransferase</fullName>
            <ecNumber evidence="8">2.1.1.37</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">dcm_2</name>
        <name evidence="9" type="ORF">BROFUL_01097</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>a 2'-deoxycytidine in DNA + S-adenosyl-L-methionine = a 5-methyl-2'-deoxycytidine in DNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:13681"/>
            <dbReference type="Rhea" id="RHEA-COMP:11369"/>
            <dbReference type="Rhea" id="RHEA-COMP:11370"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:85452"/>
            <dbReference type="ChEBI" id="CHEBI:85454"/>
            <dbReference type="EC" id="2.1.1.37"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="6 7">Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.37" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20246.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20246">
        <property type="protein sequence ID" value="KKO20246"/>
        <property type="gene ID" value="BROFUL_01097"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1365"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003886">
        <property type="term" value="F:DNA (cytosine-5-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018117">
        <property type="entry name" value="C5_DNA_meth_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001525">
        <property type="entry name" value="C5_MeTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00145">
        <property type="entry name" value="DNA_methylase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00105">
        <property type="entry name" value="C5METTRFRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00675">
        <property type="entry name" value="dcm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00094">
        <property type="entry name" value="C5_MTASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51679">
        <property type="entry name" value="SAM_MT_C5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6 8" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0680">Restriction system</keyword>
    <keyword evidence="4 6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 6 8" id="KW-0808">Transferase</keyword>
    <feature type="active site" evidence="6">
        <location>
            <position position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000743"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20246.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="272" mass="31189" checksum="58A2033B57F7A240" modified="2015-11-11" version="1">MRFIDLFAGAGGFAEGFKRAGFEPIAFIEADPAACFTLKTRLSYYYLRENNKLDIYIKYLKGEIGRDQLYSAVPSHILESVINLSIGNENNPNIFQIIERLNGKKNIDIIAGGPPCQAYSLVGRARDKNGMQEDTRNYLYVQYGRFLKKYNPKMFVFENVIGLLSAEKGKHFKNIQAYFRRLGYVVEPLKINANEFGVLQNRRRIIIIGWKKGLNPPIDNLTDQCIFEYKVESIFKDLPKLLAGGGRDKYLTYTAEINDYLYFTKIRNGVSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZF5</accession>
    <name>A0A0M2UZF5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01433</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000146">
        <property type="protein sequence ID" value="KKO19874.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19874">
        <property type="protein sequence ID" value="KKO19874"/>
        <property type="gene ID" value="BROFUL_01433"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644113" evidence="3">
        <location>
            <begin position="23"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="26"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="143"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19874.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="185" mass="20918" checksum="11424173966E8AEB" modified="2015-11-11" version="1">MRKIVPMISLCLFLLSVLGCKSFTKKNNTMDTRNSPAEETVSRPKGSGYLSNGPTVVINAGEEGQKTSFLEQFDQLRKDLASSLGKNASIVKELESEKAIKLSLESELEEFGRQAEVTQQLIIENEKVCKKLEESQAPYEKKIRELTFELTKAQIEATKAKQELIRLKIEHLVERDKQKSDISQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZI1</accession>
    <name>A0A0M2UZI1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Family 2 glycosyltransferase SpsQ</fullName>
            <ecNumber evidence="2">2.4.1.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">spsQ</name>
        <name evidence="2" type="ORF">BROFUL_00892</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.-" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000109">
        <property type="protein sequence ID" value="KKO20371.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20371">
        <property type="protein sequence ID" value="KKO20371"/>
        <property type="gene ID" value="BROFUL_00892"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="7"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20371.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="205" mass="23484" checksum="2DDDB94D2CF07835" modified="2015-11-11" version="1">MDKLKISVIIPTYNRTESLANTIRSLKQQVFIGYEIIVVDNSCTDETKILVEKEERDIDKNRCFIMYLPEPSIGLHNARHTGAKASKGEILLYVDDDIIADENLLNEILKPYADPVVGCVGGKILPKWEVNPPEWIKLFSLSWLSILDLGEEIKETEVLYGCNFSIRRQILFDIGGFNPDGFPDRKYWYFRGDGEMGLLRKLHTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZI2</accession>
    <name>A0A0M2UZI2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative heat shock protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00037</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the small heat shock protein (HSP20) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000006">
        <property type="protein sequence ID" value="KKO21242.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21242">
        <property type="protein sequence ID" value="KKO21242"/>
        <property type="gene ID" value="BROFUL_00037"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002068">
        <property type="entry name" value="A-crystallin/Hsp20_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008978">
        <property type="entry name" value="HSP20-like_chaperone"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00011">
        <property type="entry name" value="HSP20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49764">
        <property type="entry name" value="SSF49764"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01031">
        <property type="entry name" value="SHSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="SHSP" evidence="3">
        <location>
            <begin position="23"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003616"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS01031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO21242.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="134" mass="15346" checksum="7A5AA61E75EFD28F" modified="2015-11-11" version="1">METKEHPSVEKKKIAPDKCVITGKGDWYFPQSDIYETPDNFTILIDMPGVGTENIAIDLRDNELIVNGEVSQEAYRDEKVLHNEYTIGHYHRHFVISDAINRDKIEAKMSDGVLSLVLPKAEHVKPRKIEVRSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZW3</accession>
    <name>A0A0M2UZW3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Serine protease</fullName>
            <ecNumber evidence="3">3.4.21.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01233</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the peptidase S1B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.-" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000135">
        <property type="protein sequence ID" value="KKO20034.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20034">
        <property type="protein sequence ID" value="KKO20034"/>
        <property type="gene ID" value="BROFUL_01233"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1528"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043504">
        <property type="entry name" value="Peptidase_S1_PA_chymotrypsin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008256">
        <property type="entry name" value="Peptidase_S1B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001254">
        <property type="entry name" value="Trypsin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018114">
        <property type="entry name" value="TRYPSIN_HIS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00089">
        <property type="entry name" value="Trypsin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00839">
        <property type="entry name" value="V8PROTEASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="SSF50494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00134">
        <property type="entry name" value="TRYPSIN_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 6" id="KW-0645">Protease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0720">Serine protease</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Peptidase S1" evidence="5">
        <location>
            <begin position="133"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="27"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU004296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20034.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="334" mass="35261" checksum="D47CE04435127048" modified="2015-11-11" version="1">MSQHHESSSGTERPGNVGDSQPGGCGGGGSSGESTGSLHAPVSSEGRLEGMAGGEAAVTVDQVAESFDGEPRGGELESLPGFDPQRALGEGMPVEILTDELVDLCECRPEGSPLESVCGRDDRVEVTSTTVVPWRWICKLIITFPNGARGGCTGWFIGPKAVMTAGHCVYSSANGGWARQIEVIPGMRGASRPYGSMIGTSFRSVTGWTNNADPNYDYGCIILSSASLGNQVGWFGFAALTDASLLNLLANNSGYPGDKPPGTQWFNAGRITNMTARKLYYMLDTYGGQSGSPTWRYLNGQRHAVGIHAYGGCPNSSTRIVAAVFNNMMAWRNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V024</accession>
    <name>A0A0M2V024_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Fe-S oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_00679</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20561.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20561">
        <property type="protein sequence ID" value="KKO20561"/>
        <property type="gene ID" value="BROFUL_00679"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023885">
        <property type="entry name" value="4Fe4S-binding_SPASM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13186">
        <property type="entry name" value="SPASM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="5">
        <location>
            <begin position="83"/>
            <end position="297"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20561.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="413" mass="46491" checksum="913374FDA1F3490B" modified="2015-11-11" version="1">MTSFDFLHIDAEIREGKIVGRAGGVLGSLLQPYVDQFFEKINSLKVIAKINGMQVYNLYNPPFPSQAGMRFLERKLRMMLHKMAFPVTANLAITHKCQCQCIHCSADPFIDPAKKELTVEEIKTVVDGALDLGASLIIYVGGEPLLREELYDLIHYVDKTKAIPMIFTNGLLLTEENVRRLAQAGLFSLNISIDSSEPELHNEFRAVPGCYQKAFEGAERCRKAGILTGISTYATSESIKTGKVEKLLKIAQDQGFSEVTIFDCIPSGRFLKDTSKILTAEDRKQLIALTKKYHEMEHPMGINCMSIINSPRGVGCYGAQSQFYMTAYGDINPCDFNPINFGNVREMSIQEIWKKMVTHPDFSKRYPTCRMQSKAYRKKYIDPLPKNVRLPVKIEDIAPIELADQEITLAGVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V037</accession>
    <name>A0A0M2V037_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="14 15">Dihydroxy-acid dehydratase</fullName>
            <shortName evidence="15">DAD</shortName>
            <ecNumber evidence="14 15">4.2.1.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="primary">ilvD</name>
        <name evidence="16" type="ORF">BROFUL_00695</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="15">Functions in the biosynthesis of branched-chain amino acids. Catalyzes the dehydration of (2R,3R)-2,3-dihydroxy-3-methylpentanoate (2,3-dihydroxy-3-methylvalerate) into 2-oxo-3-methylpentanoate (2-oxo-3-methylvalerate) and of (2R)-2,3-dihydroxy-3-methylbutanoate (2,3-dihydroxyisovalerate) into 2-oxo-3-methylbutanoate (2-oxoisovalerate), the penultimate precursor to L-isoleucine and L-valine, respectively.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>(2R)-2,3-dihydroxy-3-methylbutanoate = 3-methyl-2-oxobutanoate + H2O</text>
            <dbReference type="Rhea" id="RHEA:24809"/>
            <dbReference type="ChEBI" id="CHEBI:11851"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:49072"/>
            <dbReference type="EC" id="4.2.1.9"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="11">
            <dbReference type="Rhea" id="RHEA:24810"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>(2R,3R)-2,3-dihydroxy-3-methylpentanoate = (S)-3-methyl-2-oxopentanoate + H2O</text>
            <dbReference type="Rhea" id="RHEA:27694"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:35146"/>
            <dbReference type="ChEBI" id="CHEBI:49258"/>
            <dbReference type="EC" id="4.2.1.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="15">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
        <text evidence="15">Binds 1 [2Fe-2S] cluster per subunit. This cluster acts as a Lewis acid cofactor.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 15">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="13 15">Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 3/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="12 15">Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 3/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="15">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 15">Belongs to the IlvD/Edd family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.9" evidence="14 15"/>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20576.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20576">
        <property type="protein sequence ID" value="KKO20576"/>
        <property type="gene ID" value="BROFUL_00695"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.882"/>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00057"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00049">
        <property type="reaction ID" value="UER00061"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004160">
        <property type="term" value="F:dihydroxy-acid dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009099">
        <property type="term" value="P:valine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00012">
        <property type="entry name" value="IlvD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042096">
        <property type="entry name" value="Dihydro-acid_dehy_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004404">
        <property type="entry name" value="DihydroxyA_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000581">
        <property type="entry name" value="DiOHA_6PGluconate_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020558">
        <property type="entry name" value="DiOHA_6PGluconate_deHydtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037237">
        <property type="entry name" value="IlvD/EDD_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00920">
        <property type="entry name" value="ILVD_EDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143975">
        <property type="entry name" value="SSF143975"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00110">
        <property type="entry name" value="ilvD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00886">
        <property type="entry name" value="ILVD_EDD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00887">
        <property type="entry name" value="ILVD_EDD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 15" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="3 15" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="10 15" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="7 15" id="KW-0408">Iron</keyword>
    <keyword evidence="8 15" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="9 15" id="KW-0456">Lyase</keyword>
    <keyword evidence="6 15" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 15" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="15">
        <location>
            <position position="466"/>
        </location>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="78"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="120"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" description="via carbamate group" evidence="15">
        <location>
            <position position="121"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="440"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-carboxylysine" evidence="15">
        <location>
            <position position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00029304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00029436"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00029437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00029490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="KKO20576.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="552" mass="58306" checksum="880EADB6BD66FC2D" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0V8</accession>
    <name>A0A0M2V0V8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Molybdenum ABC transporter substrate binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00475</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial solute-binding protein ModA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000063">
        <property type="protein sequence ID" value="KKO20796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20796">
        <property type="protein sequence ID" value="KKO20796"/>
        <property type="gene ID" value="BROFUL_00475"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015689">
        <property type="term" value="P:molybdate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005950">
        <property type="entry name" value="ModA"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01256">
        <property type="entry name" value="modA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20796.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="243" mass="27944" checksum="9AC7CAA709298020" modified="2015-11-11" version="1">MRLIIPEKRITRFLAIVCATWLLFLFMAFHHSVRADEKILIAAAANLNPTMDKICKGFEKRYPTIDVDVSYGSSGNFFAQIKQGAPFDIFFSADTTYPARLEEEGLAIKGKSKIYAFGSIVLWIPRKSALNPRKGLQVVLDKEVKKLAIANQKLAPTGWRQRRRFGTMGCGTRFRTNWSSGKIFPRRHNLSSRALPTWELSHCLRQFHQKWKKTEIIGSSLQNRITSWDRPMLSRKEARISRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V146</accession>
    <name>A0A0M2V146_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00859</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000105">
        <property type="protein sequence ID" value="KKO20434.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20434">
        <property type="protein sequence ID" value="KKO20434"/>
        <property type="gene ID" value="BROFUL_00859"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1085"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20434.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="324" mass="35552" checksum="4580FE76CFDD4BB4" modified="2015-11-11" version="1">MSSKREDDEGSFFKPLNLSKIKTYSIKERKNLSHVNRFAKPVSPQDGMHAFFESLPEFLASANLRKVIDAIVHAHRKKRPVVMALGAHVIKCGLSPLIIDLMNRRIITALAMHGASAIHDYEVSLIGATSEDVAETLKDGSFGMVKETAEAFQAASAHGIKEGKGLGRALGDKIVEEENTYHDLSLLAWGARLNIPTTVHVALGTDTIHMHPNVSGRDLGESSHTDFKILASVVSQLEGGVWLNVGSAVILPEVFLKALCIARNLGHKVENFVTVNMDMIQHYRPQTNVLRRPTPHGYAITGHHEIMLPVLRMGVLTKLGRGDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V147</accession>
    <name>A0A0M2V147_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00407</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000054">
        <property type="protein sequence ID" value="KKO20871.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20871">
        <property type="protein sequence ID" value="KKO20871"/>
        <property type="gene ID" value="BROFUL_00407"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20871.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="57" mass="6394" checksum="5DE842A90FB0CB29" modified="2015-11-11" version="1">MISTLLADEQMEAEEKTKIVKQIHSEVEQLNALSAELHNILKLRSNVIPNEGKPAKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V170</accession>
    <name>A0A0M2V170_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">CDP-diacylglycerol/glycerol-3-phosphate3-phosphatidyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BROFUL_00820</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="10">Phospholipid metabolism.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the CDP-alcohol phosphatidyltransferase class-I family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000103">
        <property type="protein sequence ID" value="KKO20464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20464">
        <property type="protein sequence ID" value="KKO20464"/>
        <property type="gene ID" value="BROFUL_00820"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1036"/>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00057"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008444">
        <property type="term" value="F:CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1760">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000462">
        <property type="entry name" value="CDP-OH_P_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043130">
        <property type="entry name" value="CDP-OH_PTrfase_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004570">
        <property type="entry name" value="Phosphatidylglycerol_P_synth"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01066">
        <property type="entry name" value="CDP-OH_P_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000847">
        <property type="entry name" value="Phos_ph_gly_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00560">
        <property type="entry name" value="pgsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00379">
        <property type="entry name" value="CDP_ALCOHOL_P_TRANSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword evidence="9" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 11 13" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="20"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="95"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="135"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="164"/>
            <end position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00025707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU003750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO20464.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="191" mass="21638" checksum="0BA24E89CA2277EA" modified="2015-11-11" version="1">MGSFDYSKYTAFNLPNRLTLLRLLLAIVFFMFLSYRYYNVALGAFLLAWLTDWLDGYLARKKGLLTDFGRIADPFVDKIIVCGGFILLIQHAHDIIPPWMVVVIVAREFLVNSLRSYSESRGVEFGATIWGKAKMFVQSFTISFILLFFAHLKDLTVIKQGIVLMLWLTVVITVVSGIKYVVKAGPAILAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V182</accession>
    <name>A0A0M2V182_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00349</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000044">
        <property type="protein sequence ID" value="KKO20916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20916">
        <property type="protein sequence ID" value="KKO20916"/>
        <property type="gene ID" value="BROFUL_00349"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="84"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="220" mass="25242" checksum="A69D51DE871AEEE7" modified="2015-11-11" version="1">MQEISMREYCMRTCHKPVAALRHKGARTHTFNISGCLIPKGGKEYGLSSVVYERWEVKVKGVKEVKKVQVDGKKHLVMAEDAEIEKLLQRGLSLKKKIKDLDEELDSIQERIIEIARDRREETTTVTLGGITARAVVTFRESYIVKDEVEDIKIPLGPLFEMFFEKKSEYKTTADFKKFMESDHALGIEAPEKVKAAILKYVSVKETKPYLKMEEKTDGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V187</accession>
    <name>A0A0M2V187_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00354</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000044">
        <property type="protein sequence ID" value="KKO20921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20921">
        <property type="protein sequence ID" value="KKO20921"/>
        <property type="gene ID" value="BROFUL_00354"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="52" mass="5925" checksum="30C042D14E191869" modified="2015-11-11" version="1">MEGVLIPDVIIVLLSMMRRDIGFQKLLEWCRIVKTRNILSVIGVVNLLCGQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V285</accession>
    <name>A0A0M2V285_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00447</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000058">
        <property type="protein sequence ID" value="KKO20834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20834">
        <property type="protein sequence ID" value="KKO20834"/>
        <property type="gene ID" value="BROFUL_00447"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="61" mass="6936" checksum="35C1BBEEB1D2DE36" modified="2015-11-11" version="1" fragment="single">ESGEIASEKALAMTATMHFDGTLHVVIASETKQSFTHKKRYLLKEVCEKTYKKRSSYTVIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2M0</accession>
    <name>A0A0M2V2M0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00324</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000040">
        <property type="protein sequence ID" value="KKO20944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20944">
        <property type="protein sequence ID" value="KKO20944"/>
        <property type="gene ID" value="BROFUL_00324"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.399"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028098">
        <property type="entry name" value="Glyco_trans_4-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13477">
        <property type="entry name" value="Glyco_trans_4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_4-like_N" evidence="2">
        <location>
            <begin position="6"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="domain" description="Glycos_transf_1" evidence="1">
        <location>
            <begin position="187"/>
            <end position="356"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="364" mass="40349" checksum="63624EB220D421FF" modified="2015-11-11" version="1">MGKKALFVANTGFALFNFRIPLMKYLADEGWSVVAVANDEAGYADKFSREGIKFINIRIDHKGKNPIADALLIWRLKLLYNQELPTLVHHFTVKCVIFGSLAAKWAKVPVVLNSITGLGYVFAKDGLLMRTSMMLYKFALSGRPQVIFQNKDDYQLFVSNNLVKKANARVILGSGVNTKVVYPNTTRRRNNSLQFLLISRMLWSKGINEFVHAAEKIKKQFPEINFVLAGGASGAGAKGNPDAIPEKWLNDVNARGIARWVGSIPFEEVLILLDDSDVVVLPSYYPEGVPRALIEAAAKGKSIITTNTKGCKEVVVDGINGFLTPPKDVESLARCMLKFVQEPDLINKMGVESRKRQSISLMKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2X8</accession>
    <name>A0A0M2V2X8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphopantothenate/cysteine ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00224</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000028">
        <property type="protein sequence ID" value="KKO21039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21039">
        <property type="protein sequence ID" value="KKO21039"/>
        <property type="gene ID" value="BROFUL_00224"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015937">
        <property type="term" value="P:coenzyme A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035929">
        <property type="entry name" value="CoaB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007085">
        <property type="entry name" value="DNA/pantothenate-metab_flavo_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04127">
        <property type="entry name" value="DFP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102645">
        <property type="entry name" value="SSF102645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DFP" evidence="1">
        <location>
            <begin position="4"/>
            <end position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="225" mass="24699" checksum="9802D8539F9CF9FA" modified="2015-11-11" version="1">MGSLEGLRVLITAGPSRGYIDAVRYVSNTSTGQLGAAIANELLRCGAFVTFVYGTGSAIPDIALSDNVCTGRLTLIEIETVHDLLTVLHEKLRDKPCDAIVHAMAVLDYTPETSRSDKIRSDADKMVVTFVKTPKVIKFIRKLWPHAFLIGFKLEVGLSQEALVERAYTSLQENGADLVVANNQDEVARDKHQAYLVNTQKQIVSYCKTKQDIAKALVTAISNYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V317</accession>
    <name>A0A0M2V317_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Type I restriction enzyme endonuclease subunit</fullName>
            <shortName evidence="2">R protein</shortName>
            <ecNumber evidence="2">3.1.21.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00196</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Subunit R is required for both nuclease and ATPase activities, but not for modification.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>Endonucleolytic cleavage of DNA to give random double-stranded fragments with terminal 5'-phosphates, ATP is simultaneously hydrolyzed.</text>
            <dbReference type="EC" id="3.1.21.3"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="2">The type I restriction/modification system is composed of three polypeptides R, M and S.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the HsdR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.21.3" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000023">
        <property type="protein sequence ID" value="KKO21074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21074">
        <property type="protein sequence ID" value="KKO21074"/>
        <property type="gene ID" value="BROFUL_00196"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.241"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009035">
        <property type="term" value="F:type I site-specific deoxyribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007569">
        <property type="entry name" value="DUF559"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004473">
        <property type="entry name" value="Restrct_endonuc_typeI_HsdR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040980">
        <property type="entry name" value="SWI2_SNF2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021810">
        <property type="entry name" value="T1RH-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11867">
        <property type="entry name" value="DUF3387"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04480">
        <property type="entry name" value="DUF559"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18766">
        <property type="entry name" value="SWI2_SNF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00348">
        <property type="entry name" value="hsdR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0680">Restriction system</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="4">
        <location>
            <begin position="205"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="843"/>
            <end position="877"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU364115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO21074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="929" mass="104754" checksum="5E981ADF04FDAE5C" modified="2015-11-11" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UP68</accession>
    <name>A0A0M2UP68_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter permease component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_03379</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17928">
        <property type="protein sequence ID" value="KKO17928"/>
        <property type="gene ID" value="BROFUL_03379"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4155"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003838">
        <property type="entry name" value="ABC3_permease_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02687">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="16"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="262"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="306"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="348"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="domain" description="FtsX" evidence="7">
        <location>
            <begin position="292"/>
            <end position="378"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO17928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="384" mass="41720" checksum="92E278F107C639AE" modified="2015-11-11" version="1">MNLIAIKMLVGNRAKYIGIVVGLTFASLLITQQAAIFLGLMTRTFGFLTDTTLPDIWVMDPKVQYIDDLKPLKETESLRVRSVEGVAWAVPLYKGLLKARLPNGTFQTCNVVGLDDETLIGGPPKMVQGQLADLRGSDAVIINTVGANSKLARVLPDGSRVPMRIGDTMELNDHRAVVVGICQVQRTFQSQPVIYTTFSRATVFAPRERKLMSFVLVKAKPGQDIHALCQRIQKATGLAAYTREGFQALTVRYYMKYTGIPINFGTTVVLGFIVGVAIAGQTFYNFTLDNIRYFGTLKAMGASDFALLRMILLQAATVGAIGYGLGVGIASVLGLSSGSTELSFHLPWQLLLFSAVAVMVICAGSAALSMWKVVRLEPAIVFKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPM3</accession>
    <name>A0A0M2UPM3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter ATP-binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_03239</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000296">
        <property type="protein sequence ID" value="KKO18068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18068">
        <property type="protein sequence ID" value="KKO18068"/>
        <property type="gene ID" value="BROFUL_03239"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3993"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032524">
        <property type="entry name" value="ABC_tran_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032781">
        <property type="entry name" value="ABC_tran_Xtn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037118">
        <property type="entry name" value="Val-tRNA_synth_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16326">
        <property type="entry name" value="ABC_tran_CTD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12848">
        <property type="entry name" value="ABC_tran_Xtn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="17"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="342"/>
            <end position="556"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="582"/>
            <end position="616"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="49"/>
            <end position="56"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="374"/>
            <end position="381"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="662" mass="75583" checksum="6078D76EC6F7A65C" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPQ1</accession>
    <name>A0A0M2UPQ1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10 11">DNA ligase</fullName>
            <ecNumber evidence="10 11">6.5.1.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Polydeoxyribonucleotide synthase [NAD(+)]</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">ligA</name>
        <name evidence="13" type="ORF">BROFUL_03223</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 10">DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="10">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the NAD-dependent DNA ligase family. LigA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.5.1.2" evidence="10 11"/>
    <dbReference type="EMBL" id="LAQJ01000294">
        <property type="protein sequence ID" value="KKO18093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18093">
        <property type="protein sequence ID" value="KKO18093"/>
        <property type="gene ID" value="BROFUL_03223"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3968"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003911">
        <property type="term" value="F:DNA ligase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00114">
        <property type="entry name" value="LIGANc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01588">
        <property type="entry name" value="DNA_ligase_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001357">
        <property type="entry name" value="BRCT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036420">
        <property type="entry name" value="BRCT_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041663">
        <property type="entry name" value="DisA/LigA_HHH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018239">
        <property type="entry name" value="DNA_ligase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033136">
        <property type="entry name" value="DNA_ligase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001679">
        <property type="entry name" value="DNAligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013839">
        <property type="entry name" value="DNAligase_adenylation"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013840">
        <property type="entry name" value="DNAligase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003583">
        <property type="entry name" value="Hlx-hairpin-Hlx_DNA-bd_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004150">
        <property type="entry name" value="NAD_DNA_ligase_OB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010994">
        <property type="entry name" value="RuvA_2-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00533">
        <property type="entry name" value="BRCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01653">
        <property type="entry name" value="DNA_ligase_aden"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03120">
        <property type="entry name" value="DNA_ligase_OB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12826">
        <property type="entry name" value="HHH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001604">
        <property type="entry name" value="LigA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00292">
        <property type="entry name" value="BRCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00278">
        <property type="entry name" value="HhH1"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00532">
        <property type="entry name" value="LIGANc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47781">
        <property type="entry name" value="SSF47781"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52113">
        <property type="entry name" value="SSF52113"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00575">
        <property type="entry name" value="dnlj"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50172">
        <property type="entry name" value="BRCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01055">
        <property type="entry name" value="DNA_LIGASE_N1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01056">
        <property type="entry name" value="DNA_LIGASE_N2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 10 11" id="KW-0227">DNA damage</keyword>
    <keyword evidence="9 10 11" id="KW-0234">DNA repair</keyword>
    <keyword evidence="3 10 11" id="KW-0235">DNA replication</keyword>
    <keyword evidence="2 10 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="7 10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="10" id="KW-0464">Manganese</keyword>
    <keyword evidence="4 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 10 11" id="KW-0520">NAD</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 10" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="BRCT" evidence="12">
        <location>
            <begin position="594"/>
            <end position="671"/>
        </location>
    </feature>
    <feature type="active site" description="N6-AMP-lysine intermediate" evidence="10">
        <location>
            <position position="117"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="32"/>
            <end position="36"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="81"/>
            <end position="82"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="115"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="138"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="179"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="295"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="319"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="413"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="416"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="429"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="434"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004067"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU000618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO18093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="671" mass="75879" checksum="C6DEFA4E8213C108" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPU9</accession>
    <name>A0A0M2UPU9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putative transporter protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_03373</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17922">
        <property type="protein sequence ID" value="KKO17922"/>
        <property type="gene ID" value="BROFUL_03373"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005495">
        <property type="entry name" value="LptG/LptF_permease"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33529">
        <property type="entry name" value="PTHR33529"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03739">
        <property type="entry name" value="LptF_LptG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="54"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="101"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="274"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="301"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="333"/>
            <end position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO17922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="357" mass="40916" checksum="4AA37E977300EC8F" modified="2015-11-11" version="1">MFSRLDNYILKAFIPTFFICLLIISGIYIIADLLQKLGEFVDMGGDAFGTGIRYYLYLFPVIIFQFFPAITLVAVGIVLVRLSKNREILAMQVAGISLYRILAPIFIITVFMSFASFGDQEWIIPRFAERLETLQQTAFDDNVSKNILVDDKENGNLVRIWRYHKKTQTMQSVFILGRYENKKKKFTISADEGRWLGNNTWLLNKAIRHVYNEQGKWVAPIEQLDSFEFTSTITPSELGEIKLDPSLLNFEQLKELCENEPNNPRNRVLFHSRIAYTLTHFVLLLLGIPLVVGFERLSRNLFLRVGLCVLICGIFYALSFICSSLGNIGALHPILAAWLPHVIFGSVGLLFFDMMRM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ46</accession>
    <name>A0A0M2UQ46_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">TPM_phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_03285</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000301">
        <property type="protein sequence ID" value="KKO18007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18007">
        <property type="protein sequence ID" value="KKO18007"/>
        <property type="gene ID" value="BROFUL_03285"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4051"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007621">
        <property type="entry name" value="TPM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04536">
        <property type="entry name" value="TPM_phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="194"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="domain" description="TPM_phosphatase" evidence="5">
        <location>
            <begin position="41"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18007.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="266" mass="28915" checksum="D9B0BAB2B92F58D9" modified="2015-11-11" version="1">MNLRSRLLRQNGSSCFGFLTVLFCLCLIAEAQEMPVPQRYVEDRANIISDAVEKGLNGYLQELEQKTGAQMIVLTIDTTGDIPIETYAIELATKWKLGQQGKDNGVLVVIARNDRAYRIEVGYGLEGILPDSYCGTVGRTYFVPHFQKGHFSEGIFQGTVIMIYKIAKESNVEITGMPSIAELRKKSAGRQNPYLSLLLLLVILPFFLSYLFNRRRHSSYWWGGPPTIYGGPRGFGSGGSGGFGGFGGFGGGGGGSFGGGGASGRW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ69</accession>
    <name>A0A0M2UQ69_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">NADH dehydrogenase I subunit F</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BROFUL_03074</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the complex I 51 kDa subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000285">
        <property type="protein sequence ID" value="KKO18228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18228">
        <property type="protein sequence ID" value="KKO18228"/>
        <property type="gene ID" value="BROFUL_03074"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3800"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1440.230">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001949">
        <property type="entry name" value="NADH-UbQ_OxRdtase_51kDa_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011538">
        <property type="entry name" value="Nuo51_FMN-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037225">
        <property type="entry name" value="Nuo51_FMN-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019575">
        <property type="entry name" value="Nuop51_4Fe4S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037207">
        <property type="entry name" value="Nuop51_4Fe4S-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019554">
        <property type="entry name" value="Soluble_ligand-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01512">
        <property type="entry name" value="Complex1_51K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00037">
        <property type="entry name" value="Fer4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10589">
        <property type="entry name" value="NADH_4Fe-4S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10531">
        <property type="entry name" value="SLBB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00928">
        <property type="entry name" value="NADH_4Fe-4S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140490">
        <property type="entry name" value="SSF140490"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142019">
        <property type="entry name" value="SSF142019"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00645">
        <property type="entry name" value="COMPLEX1_51K_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="6" id="KW-0288">FMN</keyword>
    <keyword evidence="9" id="KW-0408">Iron</keyword>
    <keyword evidence="10" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-0520">NAD</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="12">
        <location>
            <begin position="556"/>
            <end position="585"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="12">
        <location>
            <begin position="586"/>
            <end position="611"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007523"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO18228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="611" mass="66444" checksum="CD27D73EF86ECFED" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ79</accession>
    <name>A0A0M2UQ79_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_00097</name>
        <name evidence="8" type="ORF">BROFUL_00397</name>
        <name evidence="7" type="ORF">BROFUL_00824</name>
        <name evidence="6" type="ORF">BROFUL_01777</name>
        <name evidence="5" type="ORF">BROFUL_03143</name>
        <name evidence="4" type="ORF">BROFUL_03157</name>
        <name evidence="3" type="ORF">BROFUL_03283</name>
        <name evidence="2" type="ORF">BROFUL_03333</name>
        <name evidence="1" type="ORF">BROFUL_03440</name>
    </gene>
    <organism evidence="3 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2015-03" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Murphy D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000313">
        <property type="protein sequence ID" value="KKO17892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LAQJ01000305">
        <property type="protein sequence ID" value="KKO17990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LAQJ01000300">
        <property type="protein sequence ID" value="KKO18037.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LAQJ01000290">
        <property type="protein sequence ID" value="KKO18149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LAQJ01000287">
        <property type="protein sequence ID" value="KKO18190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LAQJ01000185">
        <property type="protein sequence ID" value="KKO19517.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LAQJ01000103">
        <property type="protein sequence ID" value="KKO20468.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LAQJ01000053">
        <property type="protein sequence ID" value="KKO20872.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LAQJ01000011">
        <property type="protein sequence ID" value="KKO21168.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17892">
        <property type="protein sequence ID" value="KKO17892"/>
        <property type="gene ID" value="BROFUL_03440"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17990">
        <property type="protein sequence ID" value="KKO17990"/>
        <property type="gene ID" value="BROFUL_03333"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18037">
        <property type="protein sequence ID" value="KKO18037"/>
        <property type="gene ID" value="BROFUL_03283"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18149">
        <property type="protein sequence ID" value="KKO18149"/>
        <property type="gene ID" value="BROFUL_03157"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18190">
        <property type="protein sequence ID" value="KKO18190"/>
        <property type="gene ID" value="BROFUL_03143"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19517">
        <property type="protein sequence ID" value="KKO19517"/>
        <property type="gene ID" value="BROFUL_01777"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20468">
        <property type="protein sequence ID" value="KKO20468"/>
        <property type="gene ID" value="BROFUL_00824"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20872">
        <property type="protein sequence ID" value="KKO20872"/>
        <property type="gene ID" value="BROFUL_00397"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21168">
        <property type="protein sequence ID" value="KKO21168"/>
        <property type="gene ID" value="BROFUL_00097"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO17990.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18037.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19517.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20468.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20872.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO21168.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="49" mass="5618" checksum="1A31000BD3CE5C72" modified="2015-11-11" version="1" fragment="single">KRLNGRTTSKVERVMRTVNLRVNVSKWSVAGALNVTKIRLAYYYNGFDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQK0</accession>
    <name>A0A0M2UQK0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03386</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17935">
        <property type="protein sequence ID" value="KKO17935"/>
        <property type="gene ID" value="BROFUL_03386"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.45.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016164">
        <property type="entry name" value="FAD-linked_Oxase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004113">
        <property type="entry name" value="FAD-linked_oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016171">
        <property type="entry name" value="Vanillyl_alc_oxidase_C-sub2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02913">
        <property type="entry name" value="FAD-oxidase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55103">
        <property type="entry name" value="SSF55103"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO17935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="297" mass="33077" checksum="3FE5FBB80B10A6B4" modified="2015-11-11" version="1">MSLEVVLANGSVIHTGRKTLKSVTGYDLTRLFVGSEGTLGVFTRITVKLLPLPEKIETLLVFFATTQDAVQSASQIIFNNLLPRAMEFIDKSSITCIQGYRQEMQIPAEVNALLLIDIDGKEASVKAEASLIEEIVRKNHAIRVASAKNGQERDVLWEVRRAISPALYNIAPYKINEDICVPRSRILEILDRIANIHNRYPSLKVACFGHIGDGNIHVNVMYDKGDQQKTFAERMIEEILRNTVEVGGTISGEHGIGNVKSAFLSYEIPPMELEIMKDIKRLLDPKGILNPGKMFSC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQS0</accession>
    <name>A0A0M2UQS0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03311</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000302">
        <property type="protein sequence ID" value="KKO18000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18000">
        <property type="protein sequence ID" value="KKO18000"/>
        <property type="gene ID" value="BROFUL_03311"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="173" mass="20041" checksum="962FF4AC4292A96A" modified="2015-11-11" version="1">MITQQQADYLVALPKHIIEDDALLERKLYAPSFPIDDRMYSVSKADDEFSFFLEITQSSKKNLKLTLHFQEEDASIGLLRVDFNGRHPNPEIANDKVPDIFRSFAGQWLEESHIHYFVEGYKPLAWAIPLKADNTFSVKDFTNISEFGDIFRVFGNKINLQTVLEICIQRQLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR19</accession>
    <name>A0A0M2UR19_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">GroEL suppressor protein SugE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">sugE_2</name>
        <name evidence="6" type="ORF">BROFUL_02767</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the drug/metabolite transporter (DMT) superfamily. Small multidrug resistance (SMR) (TC 2.A.7.1) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000262">
        <property type="protein sequence ID" value="KKO18533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18533">
        <property type="protein sequence ID" value="KKO18533"/>
        <property type="gene ID" value="BROFUL_02767"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3424"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000390">
        <property type="entry name" value="Small_drug/metabolite_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045324">
        <property type="entry name" value="Small_multidrug_res"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30561">
        <property type="entry name" value="PTHR30561"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00893">
        <property type="entry name" value="Multi_Drug_Res"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="33"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="57"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="84"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="105" mass="11123" checksum="EF729F6A30A16C0E" modified="2015-11-11" version="1">MSWIALIIAGVFEVVWAIGLKYSHGFTRLLPSAVTAFAMIVSFVLLGVAAKSLPIGTAYAIWTGIGTVGTAIAGIYLFHESRDWGRVCCILVILAGVAGLKILSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR33</accession>
    <name>A0A0M2UR33_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Endopeptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">BROFUL_02984</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="7 8">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="7 8">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the peptidase M48 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000281">
        <property type="protein sequence ID" value="KKO18327.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18327">
        <property type="protein sequence ID" value="KKO18327"/>
        <property type="gene ID" value="BROFUL_02984"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3690"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071586">
        <property type="term" value="P:CAAX-box protein processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07343">
        <property type="entry name" value="M48A_Zmpste24p_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027057">
        <property type="entry name" value="CAXX_Prtase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001915">
        <property type="entry name" value="Peptidase_M48"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032456">
        <property type="entry name" value="Peptidase_M48_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01435">
        <property type="entry name" value="Peptidase_M48"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16491">
        <property type="entry name" value="Peptidase_M48_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 8" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="1 8" id="KW-0645">Protease</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4 7 8" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="40"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="67"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="120"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="145"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="262"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="300"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M48_N" evidence="11">
        <location>
            <begin position="8"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M48" evidence="10">
        <location>
            <begin position="179"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="249"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="6">
        <location>
            <position position="330"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="248"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="252"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="326"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR627057-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR627057-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF01435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF16491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO18327.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="391" mass="45665" checksum="7F2E834F5B10B7B6" modified="2015-11-11" version="1">MKKVGIFVPPEFEGIVDEALLKKTGDYETEKTHFSFFSSILSNVATIIFIFCGLLNIYNSWIASLNLPFIISGWLFFLILSYGGEFLSVPFRWYNTFKIENKYGFTTTTLRLWASDFIKTLFISTVMISLMACAGFWLIQWSPLYWWFWIWGFLFLFSICMMYLSPYVIEPLFNKFTPIENDALKERIRELTDKAGIRASRILRIDASKRSKHTNAYFTGIGKTKRIVLYDTLLETMNHSEIIAVLAHEIGHWKKKHMLKTIIAFEVVSFIALYCSFKILQSDALLTLFHIRTNTLFAKIIILAFLADILSLSFMPCVSYLMRRHEMQADRASYELTRDPESMISALVKLSKENLTNLYPHPLYVTLYYSHPPILGRLRYFRKLLEKDIGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URB3</accession>
    <name>A0A0M2URB3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Thiamine-monophosphate kinase</fullName>
            <shortName evidence="2">TMP kinase</shortName>
            <shortName evidence="2">Thiamine-phosphate kinase</shortName>
            <ecNumber evidence="2">2.7.4.16</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">thiL</name>
        <name evidence="5" type="ORF">BROFUL_03119</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the ATP-dependent phosphorylation of thiamine-monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>ATP + thiamine phosphate = ADP + thiamine diphosphate</text>
            <dbReference type="Rhea" id="RHEA:15913"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:37575"/>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.16"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cofactor biosynthesis; thiamine diphosphate biosynthesis; thiamine diphosphate from thiamine phosphate: step 1/1.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="2">Reaction mechanism of ThiL seems to utilize a direct, inline transfer of the gamma-phosphate of ATP to TMP rather than a phosphorylated enzyme intermediate.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the thiamine-monophosphate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.16" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000287">
        <property type="protein sequence ID" value="KKO18170.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18170">
        <property type="protein sequence ID" value="KKO18170"/>
        <property type="gene ID" value="BROFUL_03119"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3850"/>
    <dbReference type="UniPathway" id="UPA00060">
        <property type="reaction ID" value="UER00142"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009030">
        <property type="term" value="F:thiamine-phosphate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009229">
        <property type="term" value="P:thiamine diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02194">
        <property type="entry name" value="ThiL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.650.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02128">
        <property type="entry name" value="TMP_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010918">
        <property type="entry name" value="PurM-like_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036676">
        <property type="entry name" value="PurM-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016188">
        <property type="entry name" value="PurM-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036921">
        <property type="entry name" value="PurM-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006283">
        <property type="entry name" value="ThiL"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30270">
        <property type="entry name" value="PTHR30270"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00586">
        <property type="entry name" value="AIRS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02769">
        <property type="entry name" value="AIRS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005303">
        <property type="entry name" value="Thiam_monoph_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55326">
        <property type="entry name" value="SSF55326"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56042">
        <property type="entry name" value="SSF56042"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 5" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0784">Thiamine biosynthesis</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="AIRS" evidence="3">
        <location>
            <begin position="26"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="domain" description="AIRS_C" evidence="4">
        <location>
            <begin position="170"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="27"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="42"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>4</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="43"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="51"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="103"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="120"/>
            <end position="121"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="121"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="147"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="194"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="196"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="197"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>5</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="247"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="303"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18170.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="307" mass="33346" checksum="1447FC9238B9A339" modified="2015-11-11" version="1">MGEFSFIEWIRKRQKRRRDVVLGIGDDCAVINVSSDRLCLITTDMLVDGTHFDLKKCTVQDVGRKAIACSISDIAAMGCQPTVAVISICFPDHTTEAFARKLYKGIWDIADTYHIEIVGGDIISGRSPFCINVTMLGRDDGLKPIRRSGARVGDAILVTGMLGGAILGKHLSFEPRLKEGVALNKNFSIHAMIDISDGLTADLNHILEESGVGAVLYEDQIPVSPAAVELSVETGHTPLYHALSDGEDYELLMTVSPAQAKKIVSSGLLGDVKVSCIGEIVRGRSVRMKFSAGAIRRIKPHGYEHLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URT6</accession>
    <name>A0A0M2URT6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02725</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000253">
        <property type="protein sequence ID" value="KKO18577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18577">
        <property type="protein sequence ID" value="KKO18577"/>
        <property type="gene ID" value="BROFUL_02725"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="70" mass="8306" checksum="61903B51902AA132" modified="2015-11-11" version="1">MAQVFSGSDWLSTHWNELREFNNSWIVVNPEGFVDSRRSLDDLMAAIRERRLDISRLTFAFVTFDVRVRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URV2</accession>
    <name>A0A0M2URV2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02459</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18798">
        <property type="protein sequence ID" value="KKO18798"/>
        <property type="gene ID" value="BROFUL_02459"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="106" mass="12238" checksum="F083E006ED3D1778" modified="2015-11-11" version="1">MSERLLRGVYTEHIECARNDNVQCAIKVHGRCHCEGIFRSNLPAFIKEIWLWLCRARNNEQAGTRYQKGSAVLFDFLFLTTGFTKSLPCYFSTTKHTESLFMPSQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URZ1</accession>
    <name>A0A0M2URZ1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02436</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial histone-like protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000232">
        <property type="protein sequence ID" value="KKO18843.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18843">
        <property type="protein sequence ID" value="KKO18843"/>
        <property type="gene ID" value="BROFUL_02436"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030527">
        <property type="term" value="F:structural constituent of chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.520.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000119">
        <property type="entry name" value="Hist_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010992">
        <property type="entry name" value="IHF-like_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33175">
        <property type="entry name" value="PTHR33175"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00216">
        <property type="entry name" value="Bac_DNA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01727">
        <property type="entry name" value="DNABINDINGHU"/>
    </dbReference>
    <dbReference type="SMART" id="SM00411">
        <property type="entry name" value="BHL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47729">
        <property type="entry name" value="SSF47729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18843.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="105" mass="11927" checksum="0168087352E5043E" modified="2015-11-11" version="1">MQTTTKRDLCEKIARRTDNTHMVVKKTIQMFLDEIISELAQGNRIELRDFGVFEIRQRAARKARNPRTGEVAFVPAKNVVVFKVGKLMREKVGGPTQAQQPTQGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US29</accession>
    <name>A0A0M2US29_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF3786 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02659</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000243">
        <property type="protein sequence ID" value="KKO18642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18642">
        <property type="protein sequence ID" value="KKO18642"/>
        <property type="gene ID" value="BROFUL_02659"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024264">
        <property type="entry name" value="DUF3786"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12654">
        <property type="entry name" value="DUF3786"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF3786" evidence="1">
        <location>
            <begin position="18"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12654"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="193" mass="21834" checksum="FA414C5580506364" modified="2015-11-11" version="1">MKFESAIKRSWDNLSGSSISDNNKVKFLDDEYMVNFKLRQVLSLPNNTPVEDHRTVLILHYLLQKITGLPVVSGEYLSFNGLSSINRFADVFKKRSTDVILKRYGNNIFDIFSVLHNLPAQKANRADAAIVIEAFEGVPILIELWKADEEFGPEANILFDKTITKIFCVEDIVVLAEVVARAVSYMNADEIYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US61</accession>
    <name>A0A0M2US61_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02628</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0047 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18677.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18677">
        <property type="protein sequence ID" value="KKO18677"/>
        <property type="gene ID" value="BROFUL_02628"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3261"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.460">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001602">
        <property type="entry name" value="UPF0047"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035917">
        <property type="entry name" value="YjbQ-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30615">
        <property type="entry name" value="PTHR30615"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01894">
        <property type="entry name" value="UPF0047"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004681">
        <property type="entry name" value="UCP004681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111038">
        <property type="entry name" value="SSF111038"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00149">
        <property type="entry name" value="TIGR00149_YjbQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18677.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="137" mass="15976" checksum="5CB394BBF5D2A1C3" modified="2015-11-11" version="1">MKYLTEYLTFQTKKRREFINITREIERVLQKSGIKEGMILVSAMHITSGIFVNDAEPGLHRDIEEWMLKLIPEGHDYYHHRTGEVNGDAHLRNLLLGHQVVIPVTEGKLDLGQWQKVFYAEFDGQRSKRVIIKVMGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USA3</accession>
    <name>A0A0M2USA3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">DNA repair protein RadA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">radA</name>
        <name evidence="8" type="ORF">BROFUL_02790</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.</text>
    </comment>
    <comment type="function">
        <text evidence="5">Plays a role in repairing double-strand DNA breaks, probably involving stabilizing or processing branched DNA or blocked replication forks.</text>
    </comment>
    <comment type="domain">
        <text evidence="5">The middle region has homology to RecA with ATPase motifs including the RadA KNRFG motif, while the C-terminus is homologous to Lon protease.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 6">Belongs to the RecA family. RadA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000264">
        <property type="protein sequence ID" value="KKO18520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18520">
        <property type="protein sequence ID" value="KKO18520"/>
        <property type="gene ID" value="BROFUL_02790"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3450"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140664">
        <property type="term" value="F:ATP-dependent DNA damage sensor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000725">
        <property type="term" value="P:recombinational repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01121">
        <property type="entry name" value="Sms"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01498">
        <property type="entry name" value="RadA_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004504">
        <property type="entry name" value="DNA_repair_RadA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020588">
        <property type="entry name" value="RecA_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041166">
        <property type="entry name" value="Rubredoxin_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18073">
        <property type="entry name" value="Rubredoxin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00416">
        <property type="entry name" value="sms"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50162">
        <property type="entry name" value="RECA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 6" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5 6" id="KW-0234">DNA repair</keyword>
    <keyword evidence="5 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 5 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0346">Stress response</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <keyword evidence="2 6" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="RECA_2" evidence="7">
        <location>
            <begin position="65"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="region of interest" description="Lon-protease-like" evidence="5">
        <location>
            <begin position="350"/>
            <end position="452"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="RadA KNRFG motif" evidence="5">
        <location>
            <begin position="251"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="94"/>
            <end position="101"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01498"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="452" mass="48939" checksum="7FF3B82E22A969C3" modified="2015-11-11" version="1">MSKTGVVYVCQQCGWKSLKWAGRCGGCGEWDSTVEEIIAPSGSGSSSVAFRRELPQPITSVQLTECPCIETGMREFDRILGGGLIHGSAVLIGGTPGIGKSTLLLQVCQYISQKGYTTLYVTGEESVAQTKLRAERLSILSDNLLVVSETNLDFILENIHNTRPTLVVIDSIQMIYKPQLDSAPGTVAQVRQCANDLISIAKSTGSAIFLVGHVTKQGIIAGPKVLEHMADTVLYFEGEKFQCYRILRVVKNRFGSTDEIGIFEMRKNGLQPVDNPSEIFISQGRRISAGSTIISCMEGTRALLVEIQALVARANFGMPERKVSGVDYNRVSMILAILEKRIELKLGGQDVFVNIVGGVQVDEPAADLGIAMTIASSLKEKAIPPDTVFVGEVGLGGEVRSVSQMEIRLKEAHRLGFKRAVIPKDNAKGISKDVGIELVEVCYLSEAIEIMG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USD4</accession>
    <name>A0A0M2USD4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03407</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000312">
        <property type="protein sequence ID" value="KKO17896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17896">
        <property type="protein sequence ID" value="KKO17896"/>
        <property type="gene ID" value="BROFUL_03407"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="66"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="108"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO17896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="153" mass="16238" checksum="3307B0ECE0A829A5" modified="2015-11-11" version="1">MSTCIWKKRRKTVLKIAEFSAGNIVIGGAPKPGAEIPAHIALIATDVVMCAMIYEEYFSEKISEHSILEILGKSGILLIVAGGGGYMIAKSATGLIAEITNFLGPIGWITSGLLAAGGTALLGFVWMTIVDWAYRKQVTLKDAVLAISQRASV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USH2</accession>
    <name>A0A0M2USH2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycine cleavage complex protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02307</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO19013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19013">
        <property type="protein sequence ID" value="KKO19013"/>
        <property type="gene ID" value="BROFUL_02307"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005960">
        <property type="term" value="C:glycine cleavage complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019464">
        <property type="term" value="P:glycine decarboxylation via glycine cleavage system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06848">
        <property type="entry name" value="GCS_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002930">
        <property type="entry name" value="GCV_H"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033753">
        <property type="entry name" value="GCV_H/Fam206"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11715">
        <property type="entry name" value="PTHR11715"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01597">
        <property type="entry name" value="GCV_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lipoyl-binding" evidence="1">
        <location>
            <begin position="21"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="147" mass="17066" checksum="12DB4609E26FAA8F" modified="2015-11-11" version="1">MIPEHLKYTSTHEWFFWDNKVVTIGLSKFIVDELDDLLFLDLPKVGDEILSGISFGELEALDKLIDITSPMAGEIVAVNERLYENLNILSNDPYHHGWLIKFVTTEIHLLNELLDAKEYKAHLSKLQFAAPRQRKRYAKSIKGKRRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USJ6</accession>
    <name>A0A0M2USJ6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cation efflux transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02473</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18812.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18812">
        <property type="protein sequence ID" value="KKO18812"/>
        <property type="gene ID" value="BROFUL_02473"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3072"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008324">
        <property type="term" value="F:cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1510.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002524">
        <property type="entry name" value="Cation_efflux"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036837">
        <property type="entry name" value="Cation_efflux_CTD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027469">
        <property type="entry name" value="Cation_efflux_TMD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01545">
        <property type="entry name" value="Cation_efflux"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160240">
        <property type="entry name" value="SSF160240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161111">
        <property type="entry name" value="SSF161111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01297">
        <property type="entry name" value="CDF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="21"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="51"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="86"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="130"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="156"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18812.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="286" mass="31802" checksum="FD6D84E7D791A151" modified="2015-11-11" version="1">MEILGGIITNSLALISDAGHMLTHLFALLVSLFALYFAAKPPTGKKTYGFYRLEILAALFNGITLFMITLWIFYEAYHRFMHPETISSGKMFIVALVGLAANVACAYILKGKGHGHEHSLNVKAAFLHMLGDTLSSVGVIIGAILIYYTNWFVVDPIISVMLCILILVWSYKLVMESVDVLLEATPKEIDICKVIASLKQISGVDNAHDIHIWTITSGMYSMSGHIDTKDMMISETTKLSKEINRVLGEKFKIGHTVIQFGCECKVNNTHDEHHHPGTDPHEHHAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USQ3</accession>
    <name>A0A0M2USQ3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DDE_Tnp_1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02197</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000219">
        <property type="protein sequence ID" value="KKO19093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19093">
        <property type="protein sequence ID" value="KKO19093"/>
        <property type="gene ID" value="BROFUL_02197"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002559">
        <property type="entry name" value="Transposase_11"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01609">
        <property type="entry name" value="DDE_Tnp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DDE_Tnp_1" evidence="1">
        <location>
            <begin position="176"/>
            <end position="432"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="498"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="498" mass="56928" checksum="484A2770322C5B43" modified="2015-11-11" version="1" fragment="single">MSFIRRIKRGASIYLAEVENVRVGGKVIQKHIRYVGKEVADTPILTGSVANSTIDRVTIYGPLLMLDEIARQIDLSGILGEYGDYLLSLAYAHCISPDSLTGMADWYQKTEMGSLLSLSDVTYKKLIEAIDSVEGMKGAEIQWQIFGRLKEILNLSAKGYFYDITNIYFYGVCCPLAKRGHNAEGRRERQIQVGLAVTQGERIPIFHKVFEGNIFDARTLPDILLHLRGQHIKDICIVWDRGVSSQLNIKEAKEMGFEVLCGLALKGDLKKVADHVLGEDIISMKQRVRLQNATFYVKKKRYRIDGIDGYLAVCLNEKEKQAIRERRYDEIDHALQQIGQNKDIREGLKKYISGNKANYKSLTLAGRYDGISVIFSARNLSEKDMIRGYFEKDTVEKSFRCMKSLLEMDKVRFWLTNRVKGHIFVCYLAYLLLSVLEYRLKKIGIKATEAIETMESMCRVYITDPKSKNRFVKTVTLSKKQEDILREINPHLLTKCNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UST9</accession>
    <name>A0A0M2UST9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02180</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000215">
        <property type="protein sequence ID" value="KKO19108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19108">
        <property type="protein sequence ID" value="KKO19108"/>
        <property type="gene ID" value="BROFUL_02180"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="174" mass="19982" checksum="82505D1DF8C3B474" modified="2015-11-11" version="1">MDKKKLFQVYQEIYATNFGFMSCIEKCDGRCEQKPLSVLLPYEDEFIFSRSGKHLGNERLILPGGALEIIGNTCNFTDGVQCFIHPHRPIACRLYPFYPNLTVAGELELLIDDYCPLTESLVKDTTYVSNIVSSLHKLIPLIDRNYWQMLNEIPSHLWDDTCTARRVCVLAEDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT40</accession>
    <name>A0A0M2UT40_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02311</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO19017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19017">
        <property type="protein sequence ID" value="KKO19017"/>
        <property type="gene ID" value="BROFUL_02311"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644008" evidence="1">
        <location>
            <begin position="27"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="96" mass="10781" checksum="7C8E9274F8297E7E" modified="2015-11-11" version="1">MPEYGHNLAHSLAGALSLLLILCHNAAQPQPNFLYESGEIASEKELAMTATMHFDGTRHVVIASEAKQSFTHKKRYLLKGVCEKTYKKRSFYGEIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT48</accession>
    <name>A0A0M2UT48_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Selenocysteine synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02033</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19233.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19233">
        <property type="protein sequence ID" value="KKO19233"/>
        <property type="gene ID" value="BROFUL_02033"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2535"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025862">
        <property type="entry name" value="SelA_trans_N_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12390">
        <property type="entry name" value="Se-cys_synth_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Se-cys_synth_N" evidence="1">
        <location>
            <begin position="6"/>
            <end position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12390"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19233.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="124" mass="13944" checksum="106863BCBE9474F1" modified="2015-11-11" version="1">MHQDILRSIPSVNELLASPDISKFTGRYPRLLVVETIRAVLENIRQSLTNKKECAEAQAIDLSPQRLYHLVQESLRQKFCGIEHAINATGIILHTGLGRAPLADEAARQIQNVLKGFCTWKLRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTB6</accession>
    <name>A0A0M2UTB6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 12">Phosphoribosylformylglycinamidine cyclo-ligase</fullName>
            <ecNumber evidence="3 12">6.3.3.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10 12">AIR synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11 12">AIRS</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9 12">Phosphoribosyl-aminoimidazole synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="primary">purM</name>
        <name evidence="15" type="ORF">BROFUL_02217</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8 12">
            <text>2-formamido-N(1)-(5-O-phospho-beta-D-ribosyl)acetamidine + ATP = 5-amino-1-(5-phospho-beta-D-ribosyl)imidazole + ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:23032"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:137981"/>
            <dbReference type="ChEBI" id="CHEBI:147287"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.3.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 12">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole from N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide: step 2/2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="12">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 12">Belongs to the AIR synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.3.1" evidence="3 12"/>
    <dbReference type="EMBL" id="LAQJ01000221">
        <property type="protein sequence ID" value="KKO19082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19082">
        <property type="protein sequence ID" value="KKO19082"/>
        <property type="gene ID" value="BROFUL_02217"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2768"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00129"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004641">
        <property type="term" value="F:phosphoribosylformylglycinamidine cyclo-ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02196">
        <property type="entry name" value="PurM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.650.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00741">
        <property type="entry name" value="AIRS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010918">
        <property type="entry name" value="PurM-like_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036676">
        <property type="entry name" value="PurM-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016188">
        <property type="entry name" value="PurM-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036921">
        <property type="entry name" value="PurM-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004733">
        <property type="entry name" value="PurM_cligase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10520">
        <property type="entry name" value="PTHR10520"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00586">
        <property type="entry name" value="AIRS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02769">
        <property type="entry name" value="AIRS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55326">
        <property type="entry name" value="SSF55326"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56042">
        <property type="entry name" value="SSF56042"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00878">
        <property type="entry name" value="purM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 12" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="12" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 12 15" id="KW-0436">Ligase</keyword>
    <keyword evidence="6 12" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AIRS" evidence="13">
        <location>
            <begin position="66"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="domain" description="AIRS_C" evidence="14">
        <location>
            <begin position="181"/>
            <end position="353"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004686"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010280"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00020367"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00031908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00032931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00033093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF00586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF02769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KKO19082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="357" mass="39445" checksum="B4B4A761E3E03350" modified="2015-11-11" version="1">MTKKTKKGLSYRDAGVDIGTKGQFTTDIYSKMQTTFSQRVIENPDGFGGLFALNSRLKKYRQPVLVSSTDGVGTKLKIAFMMNKHNTIGIDLVAMCVNDIVVLGAEPLFFLDYLASSKIVPTVLHEVLDGIVEGCRQAGCALIGGETPEMPGFYQKGEYDIAGFVIGVVEKENVITGKTIRPGDRVIGLRSSGIHSNGFSLVRKVFFDKAKMKTNQRLTKYGLNTTLGEELIRPTNIYVKTILKTLNKHKPKNVIKGIAHITGGGLRDNIPRILPEGCSVTLERKEWDVPKIFKIIQDVGEITDQEMFHVFNMGIGMVLIVPESEVKKVLNTLKYAKEPGIVIGEVTRGDNRIVRIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTE3</accession>
    <name>A0A0M2UTE3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Riboflavin synthase alpha subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02432</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000231">
        <property type="protein sequence ID" value="KKO18885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18885">
        <property type="protein sequence ID" value="KKO18885"/>
        <property type="gene ID" value="BROFUL_02432"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3022"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00402">
        <property type="entry name" value="Riboflavin_synthase_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023366">
        <property type="entry name" value="ATP_synth_asu-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001783">
        <property type="entry name" value="Lumazine-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026017">
        <property type="entry name" value="Lumazine-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21098">
        <property type="entry name" value="PTHR21098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00677">
        <property type="entry name" value="Lum_binding"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000498">
        <property type="entry name" value="Riboflavin_syn_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00187">
        <property type="entry name" value="ribE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51177">
        <property type="entry name" value="LUMAZINE_BIND"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Lumazine-binding" evidence="3">
        <location>
            <begin position="27"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="repeat" description="Lumazine-binding" evidence="2">
        <location>
            <begin position="27"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="repeat" description="Lumazine-binding" evidence="2">
        <location>
            <begin position="123"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="domain" description="Lumazine-binding" evidence="3">
        <location>
            <begin position="123"/>
            <end position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00524"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="240" mass="26055" checksum="1FC5E7FDA6CA0598" modified="2015-11-11" version="1">MNFRVIAVTLCRFPNHGLQNLKKECTMFTGMIESLATVKNLSLRAGGGELFLDFSGFHDGLTLGESIAINGACLTVKEISGRMVSFDISGETLKKTALGKLQHAEKVNIERSLKMGDRLGGHFVTGHVDGIGMIQGKKQSADQCTMSFSVEKRLTDMMIEKGSVAIDGISLTVVDLADGLFSVAVIPYTLTATTLGFKKVGDPVNIETDMMGKWIKKHLANIQEKKGGITREQLIEQGFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTE8</accession>
    <name>A0A0M2UTE8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Site-specific DNA-methyltransferase (adenine-specific)</fullName>
            <ecNumber evidence="2">2.1.1.72</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02405</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 2'-deoxyadenosine in DNA + S-adenosyl-L-methionine = an N(6)-methyl-2'-deoxyadenosine in DNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:15197"/>
            <dbReference type="Rhea" id="RHEA-COMP:12418"/>
            <dbReference type="Rhea" id="RHEA-COMP:12419"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:90615"/>
            <dbReference type="ChEBI" id="CHEBI:90616"/>
            <dbReference type="EC" id="2.1.1.72"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.72" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000230">
        <property type="protein sequence ID" value="KKO18890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18890">
        <property type="protein sequence ID" value="KKO18890"/>
        <property type="gene ID" value="BROFUL_02405"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2990"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009007">
        <property type="term" value="F:site-specific DNA-methyltransferase (adenine-specific) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011639">
        <property type="entry name" value="RM_methylase_Eco57I-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07669">
        <property type="entry name" value="Eco57I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Eco57I" evidence="4">
        <location>
            <begin position="142"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="75"/>
            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF07669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="488" mass="57116" checksum="1A098B816719D675" modified="2015-11-11" version="1">MPDIDFNIRAGNTLVGFTALEQIKKAITTEKHGQAPQKRLLQQEDLDTMKRIEEKAQDIDSLFALFRQQQTELGGEVTTADKQELRKRLKALEDELNRYLASEYGISQNHFKSKPPYEKKFSEWLASHKPFHWFIEFHAIMKNGGFDVIIGNPPYVKYSKVKDDYTIKGYKTENCGNLYAFVMERSLSLIRKQGRCGLIIPIASVSTNGMSELQQLYDDYIQWHSHYATRPGKLFMGVDMNLTISLLTHFDKHKHCTSYSTFYYRWSNGTITDRDSLFQRLQYIELPSNVKLANKYPKLGSSVELKIIRQMLSKGQKIENYYDRNGKILYYHSGGRYWRKALPQKLSSHYKPVTISEKTFEACFCLLNSQLFYWYWIINSNCMDVVEREVFKLPVFNLTDVNSEDFYKLMNGLLSQYSTSTTIRPRRGEIINTDEINFDVQKSKPIIDEIDRVLARHYGFTDDELDYIINYDIKYRMGRVALENDESS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTH2</accession>
    <name>A0A0M2UTH2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 12">Flagellar biosynthetic protein FlhB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12 14" type="primary">flhB</name>
        <name evidence="14" type="ORF">BROFUL_03018</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="12">Cell membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 12">Belongs to the type III secretion exporter family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18291.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18291">
        <property type="protein sequence ID" value="KKO18291"/>
        <property type="gene ID" value="BROFUL_03018"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3726"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044780">
        <property type="term" value="P:bacterial-type flagellum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1690.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006136">
        <property type="entry name" value="FlhB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006135">
        <property type="entry name" value="T3SS_substrate_exporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029025">
        <property type="entry name" value="T3SS_substrate_exporter_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30531">
        <property type="entry name" value="PTHR30531"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01312">
        <property type="entry name" value="Bac_export_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00950">
        <property type="entry name" value="TYPE3IMSPROT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160544">
        <property type="entry name" value="SSF160544"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00328">
        <property type="entry name" value="flhB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 12" id="KW-1005">Bacterial flagellum biogenesis</keyword>
    <keyword evidence="11 12" id="KW-1006">Bacterial flagellum protein export</keyword>
    <keyword evidence="5 12" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="14" id="KW-0966">Cell projection</keyword>
    <keyword evidence="14" id="KW-0969">Cilium</keyword>
    <keyword evidence="14" id="KW-0282">Flagellum</keyword>
    <keyword evidence="10 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="8 12" id="KW-0653">Protein transport</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 12" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4 12" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="33"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="96"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="142"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="191"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021622"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU364091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KKO18291.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="354" mass="39452" checksum="E805C21FA745E646" modified="2015-11-11" version="1">MAFGSDTEKTEQPTSRRLDEARNKGSVAFSPDLNSAASLLVGFVLLYALGVNTYNSLHKTMQSSLGGLVGKDITTDSLVTITMDHVYVLIKILSPFLGGLLLMGLVTSYLQIGFMFNFGLLKPNLSKLNIISGVKNLFSIRSFVKLIASVLKLIIVGGVSYFYIKKEFSRIDIVDTIDESLSALLVTNVKLMIGLALRVSAALLLLAVLDYFYQKWQYKRNLRMSKEEVKEERKQMDGDPLIKSKIRAIQRQMAMKRMMSAIPKADVVITNPSHFAVVLKYDGSAMKAPTVVAKGADLIAKRIKEIAKKHKVPLVEDKLLAQTLYKTVEIGKEIPQKLYYAVAKVLSYVYQLKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTL7</accession>
    <name>A0A0M2UTL7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ABC transporter substrate binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02348</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18955">
        <property type="protein sequence ID" value="KKO18955"/>
        <property type="gene ID" value="BROFUL_02348"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2916"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="229" mass="24822" checksum="96BFAD6722A2590F" modified="2015-11-11" version="1">MKDMIQMLRMWVGLLMLCLFMACGVGCSKSVDNSAVRIGYFPNISHAQVVVGIAEGTFAAYLGPKVTIKTTLFNAGPSLIEAVFSGDIDIACVGPSPAINGYVRSGGKALKVIAGAASGGSLFVVRKDSHIKEATDLAGKRIATPQLGNTQDIAFRGYIRNFGLKPKEKGGTIDILPLRNPDILNLFMRKQIDGAWVPELGDQELSGRQMERFFLMREICGRRDGLVQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTM7</accession>
    <name>A0A0M2UTM7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Chaperone protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02963</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000279">
        <property type="protein sequence ID" value="KKO18341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18341">
        <property type="protein sequence ID" value="KKO18341"/>
        <property type="gene ID" value="BROFUL_02963"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd06257">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001623">
        <property type="entry name" value="DnaJ_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036869">
        <property type="entry name" value="J_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00226">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00625">
        <property type="entry name" value="JDOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00271">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46565">
        <property type="entry name" value="SSF46565"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50076">
        <property type="entry name" value="DNAJ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="domain" description="J" evidence="2">
        <location>
            <begin position="3"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="221"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="273" mass="32207" checksum="415C02AEB17EC134" modified="2015-11-11" version="1">MINYYDILEVHYEVSTDELKRSFRTLIKKYHPDIHGQNKLWAESKTKTIIQAYKTLSNSTSREHYDKRYKHLLYTYSKHKPREKTETTAATGAVQEHVRTIFTDLLNGHIHHAIKNHERLLKDYAGVDFFSSLNKRDSIDCLFLLAEAYEKLDKFDMAISLYEFILEKGKGNTHRSHLLHEVKERIRNIYCRHLARRAAPEKALGYYEKVLRLKLYKNENAFIHKKIAECYLTLKAYENALRHLNIALSLKPNLQGAHKLKTKLKQHIPDFAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTM9</accession>
    <name>A0A0M2UTM9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02150</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19167">
        <property type="protein sequence ID" value="KKO19167"/>
        <property type="gene ID" value="BROFUL_02150"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2681"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1771" mass="193145" checksum="7C7696DAD957D5FC" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTP3</accession>
    <name>A0A0M2UTP3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Maltose alpha-D-glucosyltransferase</fullName>
            <ecNumber evidence="3">5.4.99.16</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Maltose alpha-D-glucosyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_02955</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>D-maltose = alpha,alpha-trehalose</text>
            <dbReference type="Rhea" id="RHEA:15145"/>
            <dbReference type="ChEBI" id="CHEBI:16551"/>
            <dbReference type="ChEBI" id="CHEBI:17306"/>
            <dbReference type="EC" id="5.4.99.16"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the glycosyl hydrolase 13 family. TreS subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.16" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000278">
        <property type="protein sequence ID" value="KKO18356.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18356">
        <property type="protein sequence ID" value="KKO18356"/>
        <property type="gene ID" value="BROFUL_02955"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3659"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047471">
        <property type="term" value="F:maltose alpha-D-glucosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.400.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006047">
        <property type="entry name" value="Glyco_hydro_13_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032091">
        <property type="entry name" value="Malt_amylase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045857">
        <property type="entry name" value="O16G_dom_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012810">
        <property type="entry name" value="TreS/a-amylase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00128">
        <property type="entry name" value="Alpha-amylase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16657">
        <property type="entry name" value="Malt_amylase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00642">
        <property type="entry name" value="Aamy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02456">
        <property type="entry name" value="treS_nterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aamy" evidence="7">
        <location>
            <begin position="22"/>
            <end position="416"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001595"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00031378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18356.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="600" mass="71181" checksum="1744B7FD4D786445" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTW0</accession>
    <name>A0A0M2UTW0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02882</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000271">
        <property type="protein sequence ID" value="KKO18426.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18426">
        <property type="protein sequence ID" value="KKO18426"/>
        <property type="gene ID" value="BROFUL_02882"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18426.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="96" mass="10749" checksum="C200B2FF12519A74" modified="2015-11-11" version="1">MRVLWKNSWELLRQEGALDTGFILWRCKDLPGSRGAASIMSEVWKDEAGETGMGGAKEASCDKQTAQYCLCVKVEGNPKSELYEMVIDNLLSEVYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTW7</accession>
    <name>A0A0M2UTW7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">3-oxoacyl-(Acyl-carrier-protein) synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02057</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19257.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19257">
        <property type="protein sequence ID" value="KKO19257"/>
        <property type="gene ID" value="BROFUL_02057"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2563"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004315">
        <property type="term" value="F:3-oxoacyl-[acyl-carrier-protein] synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00834">
        <property type="entry name" value="KAS_I_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000794">
        <property type="entry name" value="Beta-ketoacyl_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018201">
        <property type="entry name" value="Ketoacyl_synth_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014031">
        <property type="entry name" value="Ketoacyl_synth_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014030">
        <property type="entry name" value="Ketoacyl_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020841">
        <property type="entry name" value="PKS_Beta-ketoAc_synthase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11712">
        <property type="entry name" value="PTHR11712"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00109">
        <property type="entry name" value="ketoacyl-synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02801">
        <property type="entry name" value="Ketoacyl-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00825">
        <property type="entry name" value="PKS_KS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00606">
        <property type="entry name" value="B_KETOACYL_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PKS_KS" evidence="3">
        <location>
            <begin position="6"/>
            <end position="414"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19257.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="414" mass="44575" checksum="865E52F6522E9854" modified="2015-11-11" version="1">MLTRRVVITGLGILAPNGNGKDAYWNALINGQSGIKKIASFDPSPFSTQIAGEVKDFNPCDYFDPKLVKRSGRFTHFGVAASKMAVADSGINLNNENRSRCGVCFGTTIGAENDIYEGQHRRFLEFGPKAVNRFTAPEFTPHVTTGYICSELRISGPNSTLSSGCSTGLEVVNWGFTMVKRGEVDVAIVGSSDAPIFPFAMSTFCALGILSKRNEAPEKASRPYDKDRDGMVISEGGAAVVIEELNHARDRGATIYAEIVSYASTCDALDVVRVDVSGQALVSALEHALVSGRMKKEVIDYICAHGNAIPTYDISETNAFKTFFGTHAYKIPISSIKSMTGQAYAAGGGFQVVATSLCLRNGFVTPTINLDTPDPLCDLDYVPLHARRFSMDTALINSHSVGGTHAVLVLRKYP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTY3</accession>
    <name>A0A0M2UTY3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03390</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17939.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17939">
        <property type="protein sequence ID" value="KKO17939"/>
        <property type="gene ID" value="BROFUL_03390"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO17939.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="81" mass="9194" checksum="14A34CF71E32C75B" modified="2015-11-11" version="1">MRYVTTLVFLAAAAYATLRYNVFKGVPWSDWSTYVMNKAVALSALAFMALEVFRSRRYLIKGSRISCVLPVCSLPPMCFCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTY8</accession>
    <name>A0A0M2UTY8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Uma2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02839</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000268">
        <property type="protein sequence ID" value="KKO18456.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18456">
        <property type="protein sequence ID" value="KKO18456"/>
        <property type="gene ID" value="BROFUL_02839"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd06260">
        <property type="entry name" value="DUF820"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1570.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012296">
        <property type="entry name" value="Nuclease_put_TT1808"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008538">
        <property type="entry name" value="Uma2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05685">
        <property type="entry name" value="Uma2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Uma2" evidence="1">
        <location>
            <begin position="10"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18456.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="76" mass="9028" checksum="7C4CFCCAF136DADD" modified="2015-11-11" version="1">MQISIRYNYQDYLQLPEDKRYEIIEGDLFMVPSPDESHQRILANIFHALSHHVRQNKLGSVYFAPFDVLFSEEDIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU67</accession>
    <name>A0A0M2UU67_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02178</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000214">
        <property type="protein sequence ID" value="KKO19135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19135">
        <property type="protein sequence ID" value="KKO19135"/>
        <property type="gene ID" value="BROFUL_02178"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="81" mass="8738" checksum="FBA6A973C5DADE77" modified="2015-11-11" version="1">MKKRFMKFGGCLFALVISTMIVINSADAKGNKKPPKPAPEPISCILFGAGGGTLVGLRYLRKKLKSKEVICQQDDARNGIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU73</accession>
    <name>A0A0M2UU73_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">30S ribosomal protein S8</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpsH</name>
        <name evidence="6" type="ORF">BROFUL_01909</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the 30S ribosomal subunit. Contacts proteins S5 and S12.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the universal ribosomal protein uS8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19382.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19382">
        <property type="protein sequence ID" value="KKO19382"/>
        <property type="gene ID" value="BROFUL_01909"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01302_B">
        <property type="entry name" value="Ribosomal_S8_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000630">
        <property type="entry name" value="Ribosomal_S8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035987">
        <property type="entry name" value="Ribosomal_S8_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11758">
        <property type="entry name" value="PTHR11758"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00410">
        <property type="entry name" value="Ribosomal_S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56047">
        <property type="entry name" value="SSF56047"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016791"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01302"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19382.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="133" mass="14897" checksum="464F45C374445C9C" modified="2015-11-11" version="1">MSMTDPISDMFTRMRNACAIKRESVDIPVSKIKMAVLKILREEGFIKEFKEISGDNNKGIIRVYLKYGPLKQPVINKINRVSKSSRRIYRGADEITKIFGGIGVAIYSTSKGVVSDKECRRLKIGGELIGIVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUA4</accession>
    <name>A0A0M2UUA4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Polymer-forming cytoskeletal</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03250</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000297">
        <property type="protein sequence ID" value="KKO18064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18064">
        <property type="protein sequence ID" value="KKO18064"/>
        <property type="gene ID" value="BROFUL_03250"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007607">
        <property type="entry name" value="BacA/B"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35024">
        <property type="entry name" value="PTHR35024"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04519">
        <property type="entry name" value="Bactofilin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="162" mass="18006" checksum="8F4CE0869589289C" modified="2015-11-11" version="1">MGLFRKGAEEAKINDETQDESETTREIRKERKMAEEKASTLTQDVEIKGTIKFSNAMKIDGKFEGEMLTEEGELFVGKTGSVKANVKVKNAVIEGRMDGNVTATEKVELKEKAHLVGDLKARTLIIEEGVVFVGNCNVNPDGFKAENPNFKEWKKEPKKGAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUE0</accession>
    <name>A0A0M2UUE0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01831</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000190">
        <property type="protein sequence ID" value="KKO19452.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19452">
        <property type="protein sequence ID" value="KKO19452"/>
        <property type="gene ID" value="BROFUL_01831"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025738">
        <property type="entry name" value="BatD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40940">
        <property type="entry name" value="PTHR40940"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13584">
        <property type="entry name" value="BatD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="468"/>
            <end position="486"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19452.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="602" mass="67790" checksum="50802B998C30B5B3" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUL6</accession>
    <name>A0A0M2UUL6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PA14 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01789</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000186">
        <property type="protein sequence ID" value="KKO19512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19512">
        <property type="protein sequence ID" value="KKO19512"/>
        <property type="gene ID" value="BROFUL_01789"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037524">
        <property type="entry name" value="PA14/GLEYA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011658">
        <property type="entry name" value="PA14_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07691">
        <property type="entry name" value="PA14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00758">
        <property type="entry name" value="PA14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51820">
        <property type="entry name" value="PA14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="33"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="60"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="98"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="197"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="224"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="289"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="354"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="405"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="433"/>
            <end position="456"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="462"/>
            <end position="481"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="493"/>
            <end position="514"/>
        </location>
    </feature>
    <feature type="domain" description="PA14" evidence="2">
        <location>
            <begin position="661"/>
            <end position="796"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51820"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="801" mass="91471" checksum="DB8C8A14092D5955" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUP3</accession>
    <name>A0A0M2UUP3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HD-GYP domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02590</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000239">
        <property type="protein sequence ID" value="KKO18711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18711">
        <property type="protein sequence ID" value="KKO18711"/>
        <property type="gene ID" value="BROFUL_02590"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037522">
        <property type="entry name" value="HD_GYP_dom"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51832">
        <property type="entry name" value="HD_GYP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HD-GYP" evidence="1">
        <location>
            <begin position="118"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="383" mass="43149" checksum="2FE4EC0211511B7F" modified="2015-11-11" version="1">MVLGNTIYGYNYEVLLNKGVVLTNTYITLLKNRGFVRIYIDDGETADIVLNDPISDKIRIMSTKNIFKTYKITQSAITNIEAKTAESIIKCINAPKIKKSFQESQAFKQLCNDINYFIDEIMNQDILSGLNSIRSIDNYTYEHSIDTAVISLIIGKKLHLVREKLVQIAIGEFLHDIGKIFIDEKIINKAGKLTAEEFSAVKQHPTYGYELLKDIHNIGIVSAHIPYQHHERQDGKGYPRGLKGTNKLDDKGVTFTEQEKMIMIAEIAALADVYDACSSDRPYRPGLPPDVVYEMIKNGAGSQFNKELVDCFLSVVPKYPVGCEIRIKNGKYMNFTGVVSSLNTHQLLKPKIRLLTDNMKNKISPIEIDCSSKGIDTEIEGIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUV2</accession>
    <name>A0A0M2UUV2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glutamine amidotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01459</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000150">
        <property type="protein sequence ID" value="KKO19818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19818">
        <property type="protein sequence ID" value="KKO19818"/>
        <property type="gene ID" value="BROFUL_01459"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1803"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01741">
        <property type="entry name" value="GATase1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044992">
        <property type="entry name" value="ChyE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42695">
        <property type="entry name" value="PTHR42695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GATase" evidence="1">
        <location>
            <begin position="27"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="245" mass="27967" checksum="F29C56964BA16BEC" modified="2015-11-11" version="1">MVLFIKHIDIEGPGTIADFLDDNALPYTVVDLSQGDKVPKWAKAFRTVICLGGPMNVYEEEEYRFLKDEDILLKRIVEEEVPFLGICLGAQLIAKATGARVTKNPEKEIGWHKIVLSDHGLKDDLFKDLPEVFKVFQWHGDTFGIPSGGKRLAFSELCQNQALQCGRNIYGIQFHVEVTKDMIVRWADAYTKELESLKGIVSDKQKMLDDYATLEKSYTRQAEQFYVNFFTAAGLLKKKFFSFRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUW2</accession>
    <name>A0A0M2UUW2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter permease component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_02517</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000236">
        <property type="protein sequence ID" value="KKO18776.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18776">
        <property type="protein sequence ID" value="KKO18776"/>
        <property type="gene ID" value="BROFUL_02517"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3127"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="63"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="102"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="151"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="201"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="258"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="67"/>
            <end position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18776.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="289" mass="32574" checksum="8BA48F1DE3EEACBB" modified="2015-11-11" version="1">MILRKTKLPYLFLLPGLMLVLTFTCIPFIDTLILSFKNAKLFLPEETVTGVANYKAVLTHSRFWYSLFITLLFVLVSISLETLVGLCVGLMMNRLSPITKALRIMILIPWTIPTVVTARMWQWMFDYNLGIINYLLQGMGIDQVNWLGNPWLAFFSILLADVWKTTPFVAIIVLAGLSAIPQQIYKAAVIDGANSWQRLRFIFLPLLLPVLGVAILFRAIEAMRVFDLVYVLTGGGPGGSTETVSVYAYKLFFYKGDFGQGAATSVIILFLVAGFGYFYTKYSFRRNPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV35</accession>
    <name>A0A0M2UV35_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Formate--tetrahydrofolate ligase</fullName>
            <ecNumber evidence="6">6.3.4.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Formyltetrahydrofolate synthetase</fullName>
            <shortName evidence="6">FHS</shortName>
            <shortName evidence="6">FTHFS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">fhs</name>
        <name evidence="7" type="ORF">BROFUL_01809</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>(6S)-5,6,7,8-tetrahydrofolate + ATP + formate = (6S)-10-formyltetrahydrofolate + ADP + phosphate</text>
            <dbReference type="Rhea" id="RHEA:20221"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:57454"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.4.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 6">One-carbon metabolism; tetrahydrofolate interconversion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the formate--tetrahydrofolate ligase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.3" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000189">
        <property type="protein sequence ID" value="KKO19470.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19470">
        <property type="protein sequence ID" value="KKO19470"/>
        <property type="gene ID" value="BROFUL_01809"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2249"/>
    <dbReference type="UniPathway" id="UPA00193"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004329">
        <property type="term" value="F:formate-tetrahydrofolate ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035999">
        <property type="term" value="P:tetrahydrofolate interconversion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00477">
        <property type="entry name" value="FTHFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01543">
        <property type="entry name" value="FTHFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000559">
        <property type="entry name" value="Formate_THF_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020628">
        <property type="entry name" value="Formate_THF_ligase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01268">
        <property type="entry name" value="FTHFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00721">
        <property type="entry name" value="FTHFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00722">
        <property type="entry name" value="FTHFS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 6 7" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 6" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="74"/>
            <end position="81"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01543"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19470.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="587" mass="63866" checksum="A65E36A8956ADF58" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV44</accession>
    <name>A0A0M2UV44_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">CRISPR-associated protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_02407</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the CRISPR-associated endoribonuclease Cas2 protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000231">
        <property type="protein sequence ID" value="KKO18861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18861">
        <property type="protein sequence ID" value="KKO18861"/>
        <property type="gene ID" value="BROFUL_02407"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2993"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004521">
        <property type="term" value="F:endoribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043571">
        <property type="term" value="P:maintenance of CRISPR repeat elements"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09725">
        <property type="entry name" value="Cas2_I_II_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021127">
        <property type="entry name" value="CRISPR_associated_Cas2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019199">
        <property type="entry name" value="Virulence_VapD/CRISPR_Cas2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09827">
        <property type="entry name" value="CRISPR_Cas2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01573">
        <property type="entry name" value="cas2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009959"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="64" mass="7362" checksum="F03F0685D351FC57" modified="2015-11-11" version="1" fragment="single">MKGISDYAVVYDITSDAERERVDKVLKGFGFRVQKSVFECRLNKRGRDELIGRLEGLHIKTGFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVB1</accession>
    <name>A0A0M2UVB1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Purine binding chemotaxis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">cheW</name>
        <name evidence="2" type="ORF">BROFUL_01769</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000184">
        <property type="protein sequence ID" value="KKO19520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19520">
        <property type="protein sequence ID" value="KKO19520"/>
        <property type="gene ID" value="BROFUL_01769"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2193"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039315">
        <property type="entry name" value="CheW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036061">
        <property type="entry name" value="CheW-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002545">
        <property type="entry name" value="CheW-lke_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22617">
        <property type="entry name" value="PTHR22617"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01584">
        <property type="entry name" value="CheW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00260">
        <property type="entry name" value="CheW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50341">
        <property type="entry name" value="SSF50341"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50851">
        <property type="entry name" value="CHEW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CheW-like" evidence="1">
        <location>
            <begin position="20"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="170" mass="18903" checksum="4376144020EBD844" modified="2015-11-11" version="1">MQAVKEKERKPGVSETVLREGKYLTFVLCGEEYGIEILKVREIIGIMNITPVPQTPGYMKGVINLRGKVIPVVDLRLKFGFQEVEHTKETCIIVVEVMNKLTGILVDTVSEVLDVRGQDLEPAPHLGDGINTEIFLGMAKIKNKVKILLDIDKILGTEEINMVESLMSIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVJ1</accession>
    <name>A0A0M2UVJ1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02789</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000264">
        <property type="protein sequence ID" value="KKO18519.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18519">
        <property type="protein sequence ID" value="KKO18519"/>
        <property type="gene ID" value="BROFUL_02789"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3449"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018649">
        <property type="entry name" value="SHOCT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09851">
        <property type="entry name" value="SHOCT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="domain" description="SHOCT" evidence="3">
        <location>
            <begin position="271"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="domain" description="SHOCT" evidence="3">
        <location>
            <begin position="308"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="243"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF09851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18519.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="338" mass="39265" checksum="B0356BD786E6C0FD" modified="2015-11-11" version="1">MRELKKYRWKQVFLFAVIICMIFAGRLHAILADTYTDGRIVVKHEELKVKKNGQYIQGQHPYELQGNSITNALSYIYFEEKGLLKKTGTLRVFQDDEIRKLVPLIIQAFSVATPSQVVAVSSFSERMLLTDQQNYCILFIFDNSLNIVFSRVHMFQTYNDAMSEKKRYTATRENPVRTKKSRFWKLVPTTGQRLEPHHENWLVIDLSDKIYQQPLAQRVGTVEEKIKVGTSDLDARLKKLEEKMGAADESKTPQPSTPANELREDSKMKSKLTLLREMVNEGIISAEDYDHKKAKMLREAMEDMSIKEQLQEIKDLKSEGLITESDYAEKKKELLDRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVV7</accession>
    <name>A0A0M2UVV7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01582</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000166">
        <property type="protein sequence ID" value="KKO19710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19710">
        <property type="protein sequence ID" value="KKO19710"/>
        <property type="gene ID" value="BROFUL_01582"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1952"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025528">
        <property type="entry name" value="BrnA_antitoxin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14384">
        <property type="entry name" value="BrnA_antitoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="105" mass="12318" checksum="128B2A7FEBF0B55F" modified="2015-11-11" version="1">MKSFGLSPQEKQQEMKKRDILKKSQTDWDRIKKMNDEEIDFSDIPEIGPEKFAKAMVRKGLKTSSGKVLLTLRIDEDVVSWFRKRGRGYQTKINALLRAYMEAHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVX1</accession>
    <name>A0A0M2UVX1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01559</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000163">
        <property type="protein sequence ID" value="KKO19725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19725">
        <property type="protein sequence ID" value="KKO19725"/>
        <property type="gene ID" value="BROFUL_01559"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025354">
        <property type="entry name" value="DUF4258"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14076">
        <property type="entry name" value="DUF4258"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="100" mass="11304" checksum="A02992AEBBD78242" modified="2015-11-11" version="1" fragment="single">MAPAFTMSGLSPPRKQCHFLGTLTFKGDPLTSSLLFSPLTQRKTPCYINLVNIAIIRKALVENKFRYTKHGTEQRINRHITGEEIEQAILTGEIIENYPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWC5</accession>
    <name>A0A0M2UWC5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00894</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000109">
        <property type="protein sequence ID" value="KKO20373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20373">
        <property type="protein sequence ID" value="KKO20373"/>
        <property type="gene ID" value="BROFUL_00894"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="100"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="395" mass="45656" checksum="11956CC152C6ACEC" modified="2015-11-11" version="1">MSTQIKRIAFFVHYMHPLKISPSIVNSAIMWAKSGYEVDIYKCESGNEGVNIPNVNIIYVSKSIPTLNPLKRISTVFSFIRNSYKYCKGRNYIRLIGFDPYGLIIAGALGIILRLPIVYYSLEVLTPAVYRLQAKFKVLHWLHYIVLKKLERFFHRRSELTVIQDKQRAELLYTTNAFSINNSVLFVPNSPLRDNGDYIKPRSNYLRVKYSIDMNSKIILYAGQISEAIGIRDLIQYTHLWPDGCVFVIHGFGPKDYIQKIISLKNQFPKVILSQDLLDENEYNTMIRSADIGIIWRIDKKNQNSFIMGAASGKMFYYLKSELPIISNKLPGLAELIEDTQCGICVDEETQVGDAILRLLNNFSFYQKNTTLCFKKYEFSKHYQKVIDIIERSSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWD5</accession>
    <name>A0A0M2UWD5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">S-adenosylmethionine synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02480</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the AdoMet synthetase 2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18819.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18819">
        <property type="protein sequence ID" value="KKO18819"/>
        <property type="gene ID" value="BROFUL_02480"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3079"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042543">
        <property type="entry name" value="AdoMet_synthase_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027790">
        <property type="entry name" value="AdoMet_synthase_2_family"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36697">
        <property type="entry name" value="PTHR36697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01941">
        <property type="entry name" value="AdoMet_Synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18819.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="322" mass="35655" checksum="09759E3AB7AEB583" modified="2015-11-11" version="1">MEIIIEKIGGVSAQQSMIEIVERKGTGHPDTLCDRAAEELSIAFSQYYLKKFGKVLHHNIDKCLLVGGRSEVCFGGGEVITPIQLIIVGRAVERVGNEKVPLEEIARETTNRWLNERLRFLKPEKNVVVETKIRTGSADLRATFDSSIPLANDTSIGVGFSPLTETESLVYHTEQFLNSTEVKRDYPMIGEDIKIMGVRVNDHIKLTIAIAFISQFISSKDAYFNTKTNLLEYIQAFVKKLTRRKVTLAINAADNYEKDVVYLTVTGTSAECGDDGQVGRGNRANGLITPYRPMTLEATAGKNPITHTGKLYNLTAGQISAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWH7</accession>
    <name>A0A0M2UWH7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">GTP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_01981</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19321">
        <property type="protein sequence ID" value="KKO19321"/>
        <property type="gene ID" value="BROFUL_01981"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2467"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042254">
        <property type="term" value="P:ribosome biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.210.12">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031167">
        <property type="entry name" value="G_OBG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014100">
        <property type="entry name" value="GTP-bd_Obg/CgtA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006169">
        <property type="entry name" value="GTP1_OBG_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036726">
        <property type="entry name" value="GTP1_OBG_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045086">
        <property type="entry name" value="OBG_GTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11702">
        <property type="entry name" value="PTHR11702"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01018">
        <property type="entry name" value="GTP1_OBG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00326">
        <property type="entry name" value="GTP1OBG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82051">
        <property type="entry name" value="SSF82051"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02729">
        <property type="entry name" value="Obg_CgtA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51710">
        <property type="entry name" value="G_OBG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51883">
        <property type="entry name" value="OBG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Obg" evidence="6">
        <location>
            <begin position="1"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="domain" description="OBG-type G" evidence="5">
        <location>
            <begin position="159"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51710"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="223" mass="23759" checksum="7A4737D14A1B90FA" modified="2015-11-11" version="1">MFVDEAIIYVKGGDGGNGCVSFRREKYVPRGGPDGGDGGKGGDVIIRVSDKIDTLLDLTSRVKYIAGNGANGKGSTKKGKDGNDLQIDLPRGTVIKDKTSGRILKDMSDVGETLVIARGGRGGRGNKCFATSTNQVPRQAEKGKPGEERWLALELKLLADVGLIGMPNAGKSTLLSRISAARPKIADYPFTTLQPQLGIVEMEDYRRFVVADIPGLLKERIGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWI4</accession>
    <name>A0A0M2UWI4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Probable transaldolase</fullName>
            <ecNumber evidence="9">2.2.1.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">tal</name>
        <name evidence="10" type="ORF">BROFUL_01332</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>D-glyceraldehyde 3-phosphate + D-sedoheptulose 7-phosphate = beta-D-fructose 6-phosphate + D-erythrose 4-phosphate</text>
            <dbReference type="Rhea" id="RHEA:17053"/>
            <dbReference type="ChEBI" id="CHEBI:16897"/>
            <dbReference type="ChEBI" id="CHEBI:57483"/>
            <dbReference type="ChEBI" id="CHEBI:57634"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="2.2.1.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 9">Carbohydrate degradation; pentose phosphate pathway; D-glyceraldehyde 3-phosphate and beta-D-fructose 6-phosphate from D-ribose 5-phosphate and D-xylulose 5-phosphate (non-oxidative stage): step 2/3.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 9">Belongs to the transaldolase family. Type 3B subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.2.1.2" evidence="9"/>
    <dbReference type="EMBL" id="LAQJ01000139">
        <property type="protein sequence ID" value="KKO19940.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19940">
        <property type="protein sequence ID" value="KKO19940"/>
        <property type="gene ID" value="BROFUL_01332"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1647"/>
    <dbReference type="UniPathway" id="UPA00115">
        <property type="reaction ID" value="UER00414"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016832">
        <property type="term" value="F:aldehyde-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004801">
        <property type="term" value="F:transaldolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006098">
        <property type="term" value="P:pentose-phosphate shunt"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00956">
        <property type="entry name" value="Transaldolase_FSA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00494">
        <property type="entry name" value="Transaldolase_3b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001585">
        <property type="entry name" value="TAL/FSA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022999">
        <property type="entry name" value="Transaldolase_3B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004731">
        <property type="entry name" value="Transaldolase_3B/F6P_aldolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018225">
        <property type="entry name" value="Transaldolase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033919">
        <property type="entry name" value="TSA/FSA_arc/bac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10683">
        <property type="entry name" value="PTHR10683"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00923">
        <property type="entry name" value="TAL_FSA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00875">
        <property type="entry name" value="fsa_talC_mipB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01054">
        <property type="entry name" value="TRANSALDOLASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 9" id="KW-0570">Pentose shunt</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 9" id="KW-0704">Schiff base</keyword>
    <keyword evidence="6 9" id="KW-0808">Transferase</keyword>
    <feature type="active site" description="Schiff-base intermediate with substrate" evidence="9">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001469"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005740"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19940.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="215" mass="23673" checksum="974F60E0EB28C57F" modified="2015-11-11" version="1">MKFFIDTADVKEIREAHSLGILDGVTTNPSLIAKTGRPFRETVEEICSFVKGPVSAEVVSLDTEGMIKEAKDLVRIADNIVVKIPLIKNGLKAVRRLADEGIKTNVTLCFSSNQALLAAKAGGTFVSPFVGRLDDRGQFGMDLIQEIRTIYDNYGYQTEIIVASIRNPVHVRDAALMGADVATIPFNVFDLLVQHPLTDDGVKRFLADWEKVPKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWI7</accession>
    <name>A0A0M2UWI7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="16">Peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">BROFUL_00853</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the peptidase M50B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000105">
        <property type="protein sequence ID" value="KKO20428.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20428">
        <property type="protein sequence ID" value="KKO20428"/>
        <property type="gene ID" value="BROFUL_00853"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06158">
        <property type="entry name" value="S2P-M50_like_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008915">
        <property type="entry name" value="Peptidase_M50"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044537">
        <property type="entry name" value="S2P-M50-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02163">
        <property type="entry name" value="Peptidase_M50"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="13 14" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="6" id="KW-0645">Protease</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 14" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11 14" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="10" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="52"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="93"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="128"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="182"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M50" evidence="15">
        <location>
            <begin position="129"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF02163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="KKO20428.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="217" mass="24204" checksum="757FDD665BDA59B3" modified="2015-11-11" version="1">MRGEDAELMNFNNLLITIPVILYALTIHEYFHGWTANKFGDSTARLQGRLTLNPLAHIDILGALCFVFANFGWGKPVPINPYNFRNPRRDNVIVSFAGPASNFVSAFLFGVTFQLLRNATFIPVNVSANVLQLLLAGIGVNLSLAFFNMIPLFPLDGSHILEGLLPYRMAQKYKEIERYSPFILLGIIIMGNYAGISILSIVLGPPIHYFLRLFTGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWM9</accession>
    <name>A0A0M2UWM9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 8">Adenylate kinase</fullName>
            <shortName evidence="6">AK</shortName>
            <ecNumber evidence="6 8">2.7.4.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">ATP-AMP transphosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">ATP:AMP phosphotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Adenylate monophosphate kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">adk</name>
        <name evidence="10" type="ORF">BROFUL_01903</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 8">
            <text>AMP + ATP = 2 ADP</text>
            <dbReference type="Rhea" id="RHEA:12973"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="6">Purine metabolism; AMP biosynthesis via salvage pathway; AMP from ADP: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6 8">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6 8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="6">Consists of three domains, a large central CORE domain and two small peripheral domains, NMPbind and LID, which undergo movements during catalysis. The LID domain closes over the site of phosphoryl transfer upon ATP binding. Assembling and dissambling the active center during each catalytic cycle provides an effective means to prevent ATP hydrolysis. Some bacteria have evolved a zinc-coordinating structure that stabilizes the LID domain.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the adenylate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.3" evidence="6 8"/>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19376.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19376">
        <property type="protein sequence ID" value="KKO19376"/>
        <property type="gene ID" value="BROFUL_01903"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2372"/>
    <dbReference type="UniPathway" id="UPA00588">
        <property type="reaction ID" value="UER00649"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004017">
        <property type="term" value="F:adenylate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044209">
        <property type="term" value="P:AMP salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01428">
        <property type="entry name" value="ADK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00235">
        <property type="entry name" value="Adenylate_kinase_Adk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006259">
        <property type="entry name" value="Adenyl_kin_sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000850">
        <property type="entry name" value="Adenylat/UMP-CMP_kin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033690">
        <property type="entry name" value="Adenylat_kinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007862">
        <property type="entry name" value="Adenylate_kinase_lid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23359">
        <property type="entry name" value="PTHR23359"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05191">
        <property type="entry name" value="ADK_lid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00094">
        <property type="entry name" value="ADENYLTKNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01351">
        <property type="entry name" value="adk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00113">
        <property type="entry name" value="ADENYLATE_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 6" id="KW-0545">Nucleotide biosynthesis</keyword>
    <keyword evidence="4 6 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6 7" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="ADK_lid" evidence="9">
        <location>
            <begin position="127"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="region of interest" description="NMP" evidence="6">
        <location>
            <begin position="30"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="region of interest" description="LID" evidence="6">
        <location>
            <begin position="126"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="10"/>
            <end position="15"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="31"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="36"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="57"/>
            <end position="59"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="85"/>
            <end position="88"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="127"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="130"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>structural</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="133"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>structural</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="150"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>structural</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="153"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>structural</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="160"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="171"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="199"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007220"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003330"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003331"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF05191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19376.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="227" mass="25533" checksum="160369CFFAD1AC77" modified="2015-11-11" version="1">MRIVFLGPPGAGKGTQAEILSKEKKLQHISSGNLLRDAVENGTETGLKAKQYIEKGQLVPDQIVVDIIRDRILDKDCRNGFLLDGFPRTLAQAKALDEMLKKLGNKLDIVFYFVVSKESIVLRLSGRRICSACGANYHTKFVPSVKDGICDKCGGKLYQRADDKLETVQERIRIYHEQTEDLIEYYKKNGILKEIESETDIKTITKKIFNVIKDASQNEPLINFGVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWS4</accession>
    <name>A0A0M2UWS4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter substrate binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01297</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the bacterial solute-binding protein 9 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20025">
        <property type="protein sequence ID" value="KKO20025"/>
        <property type="gene ID" value="BROFUL_01297"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1601"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007155">
        <property type="term" value="P:cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030001">
        <property type="term" value="P:metal ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006129">
        <property type="entry name" value="AdhesinB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006128">
        <property type="entry name" value="Lipoprotein_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006127">
        <property type="entry name" value="ZnuA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01297">
        <property type="entry name" value="ZnuA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00691">
        <property type="entry name" value="ADHESINB"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00690">
        <property type="entry name" value="ADHESNFAMILY"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0732">Signal</keyword>
    <keyword evidence="1 3" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644067" evidence="4">
        <location>
            <begin position="24"/>
            <end position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="305" mass="33855" checksum="00A1021E16E9E931" modified="2015-11-11" version="1">MKMRYHILFNLLLVIIWTSAAHAKLKIVATTSDLGAIAREIGKDKVEVTSIAKPTEDPHFVDAKPGFIVKLNKADMLIDGGLHLEIGWLPPLVTGARNQRILPGNPGYCVASAGISVLDAPVALDRSMGDVHPLGNPHFMLDPSNGKIVATHICDRLCQIDDTNCGYYKSNLNDFVKRLDAKLPEWQKMLEPFQGTKIVTYHKTFPYFAKRFRLDVVGTLEPKPGIPPSPTHISHLIPLIKDEGVKLIMIEQFRERKIPEFVANQTGAKVVVVPIMVGGLKETDDYLTLFDYTIKEIASALKTKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWV2</accession>
    <name>A0A0M2UWV2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Heme biosynthesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_00737</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000092">
        <property type="protein sequence ID" value="KKO20543.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20543">
        <property type="protein sequence ID" value="KKO20543"/>
        <property type="gene ID" value="BROFUL_00737"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.931"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023885">
        <property type="entry name" value="4Fe4S-binding_SPASM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034391">
        <property type="entry name" value="Cmo-like_SPASM_containing"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017200">
        <property type="entry name" value="PqqE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13186">
        <property type="entry name" value="SPASM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037420">
        <property type="entry name" value="PQQ_syn_pqqE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01387">
        <property type="entry name" value="BtrN-like_SPASM_domain_contain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04085">
        <property type="entry name" value="rSAM_more_4Fe4S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="7">
        <location>
            <begin position="61"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="6">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20543.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="413" mass="45804" checksum="8517DE9E4EDA185C" modified="2015-11-11" version="1">MSHPHQPHGKHPAGHPMPHMHGGHPVSPEQDSHPETIRETYTRIKDDTSGKSAIEYMKNMKNQLRLVFWETTVGCNLECVHCRRLDVSTTLAKDDMTTKEALAFVDAIVEAGRPILVLSGGEPLFRPDIFEIAKYAVSKGLSVALATNGTLVDDQTAKNIVDAGIARVSISFDGADAKTHDEFRKIPGSFERSIAGFKRLKNLGMSMQINCTIAKHNVHQVDDLYNLALKLGADALHIFMLVPVGCGVQIADDQMLHPQKYEEVLNHFYDLSKEAKIQTKATCAPHYFRIMRERAKEEGITISPKTHGMAAMTKGCLAGTGVCFVSHKGEVFPCGYLPVEAGHVKKQKFVDIWNDSPVFQKLRDPDLLEGKCGACEYKKVCEGCRARAFYDTGNYLAEEPYCIYQPKMAKAGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWW5</accession>
    <name>A0A0M2UWW5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putative cytochrome c</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_01840</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000190">
        <property type="protein sequence ID" value="KKO19461.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19461">
        <property type="protein sequence ID" value="KKO19461"/>
        <property type="gene ID" value="BROFUL_01840"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00034">
        <property type="entry name" value="Cytochrom_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0349">Heme</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644070" evidence="5">
        <location>
            <begin position="30"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="6">
        <location>
            <begin position="27"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19461.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="115" mass="12668" checksum="A264B46F3FC2C456" modified="2015-11-11" version="1">MKKIFTYCAIPVATMFGVYLSFPSFTAHAGDVKKIYKDTCELCHGADGKGSEAGKQFNVPDFTNQEYQKSRTDADMKKSMTEGTKNPNYVKLSDLGVDAADLDPLVKLVREFGGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWX8</accession>
    <name>A0A0M2UWX8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Amino acid transporter protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01201</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000128">
        <property type="protein sequence ID" value="KKO20075.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20075">
        <property type="protein sequence ID" value="KKO20075"/>
        <property type="gene ID" value="BROFUL_01201"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002293">
        <property type="entry name" value="AA/rel_permease1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13520">
        <property type="entry name" value="AA_permease_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="43"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="82"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="123"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="151"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="195"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="230"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="277"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="322"/>
            <end position="341"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="347"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="381"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="408"/>
            <end position="424"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20075.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="427" mass="45954" checksum="99C669616CCFD05D" modified="2015-11-11" version="1">MQNKQLRRELGLFDVACLGVNSVVGAGIFLLPGHLSGLAGREAVWVFPACGVLCFAIALCFAELGGMYHATGGAYLYAREAFGPFAGFLVGWMMWLSSIIGWASVASGFSLYAEYFLPAGSSWMKHLFTALLIGGLSAINYFGIKPGSRAIHFFVAGKLLPLFIFICTGLFFIQGNDSPVSTADSGVPFVSDERNFPAAIIMALYAYSGFESIAVPAGEMKHPRRDIPRVLFFVLMFATGLYVIIQIVATGTFPVLASSDKPLADAAHSFMGKTGGILIGAGALLSMGGVNAGIALTSPRSLYVLSADGFLPRIFSRVHRGYHTPCWAILLNTVLTLALSLTGSFKYLLAVSVMVSIIQYIPACLAVIVLRRYQAERARSYRIPGGHTVPVIGLAICGWLTYHVEFKVIAATALAMALSLPFYFHRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX47</accession>
    <name>A0A0M2UX47_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00832</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000104">
        <property type="protein sequence ID" value="KKO20447.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20447">
        <property type="protein sequence ID" value="KKO20447"/>
        <property type="gene ID" value="BROFUL_00832"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1052"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="119"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="144"/>
            <end position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20447.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="453" mass="52043" checksum="962AD32EEC7E1E54" modified="2015-11-11" version="1">MAEEEKPEPKQAVVLIHGIGEQVPMDTLRGFVEAVWVTDSSLRWSNKPAQALSKPDAISGNFELRRLTTADNRDKKRTDFFEFYWAHLMEGTTLSHVGAWAKVLVLRWPWRVPRQLRGIWYLIIALFLLAVIAGLNHVFKFVPISLWVIKVGSFAWFIFNSLLIGFLIKYAGDAARYLHVAPPNIEIRRRIREAGIQLLEKLHSSPRYDRIIVVGHSLGSVIGYDILTHLWVRYHNAHVMAASRNPTTYTELDKLENMVRESLTGSLDIKTYQTIQSAYLTELQSQGNKWKVTDFVTLGSPLAHASVLLARDERNFVRKEEEREFPACPPVLEDRTVKKLKLKTFSFEKDGVWVPHHAAVFAPTRWTNLYFPCHWTFWGDLIGGPVAPMFGQGVKDVAVKTNLRLGLFSHTLYWSFPKNWKERTGTPLWIQQLRNAVRILQNNEGGRVSHLKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX50</accession>
    <name>A0A0M2UX50_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01722</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000180">
        <property type="protein sequence ID" value="KKO19551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19551">
        <property type="protein sequence ID" value="KKO19551"/>
        <property type="gene ID" value="BROFUL_01722"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="26"/>
            <end position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="114" mass="13207" checksum="25C26AF763F6FC74" modified="2015-11-11" version="1">MPAPSNNTDASNSQNHTGKFNKKQMLLILFNVCLSIGLSIVLVWLVAYTPVKPEKEFHVKLFEFLKDAPYNTSQSKKEFKNNLLTFLKTNRYEPFRSEKKFFHKPLSGGTVFYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX76</accession>
    <name>A0A0M2UX76_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 9">Argininosuccinate synthase</fullName>
            <ecNumber evidence="2 9">6.3.4.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8 9">Citrulline--aspartate ligase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">argG</name>
        <name evidence="10" type="ORF">BROFUL_00792</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>ATP + L-aspartate + L-citrulline = 2-(N(omega)-L-arginino)succinate + AMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10932"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57472"/>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.4.5"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 9">Amino-acid biosynthesis; L-arginine biosynthesis; L-arginine from L-ornithine and carbamoyl phosphate: step 2/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the argininosuccinate synthase family. Type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.5" evidence="2 9"/>
    <dbReference type="EMBL" id="LAQJ01000101">
        <property type="protein sequence ID" value="KKO20477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20477">
        <property type="protein sequence ID" value="KKO20477"/>
        <property type="gene ID" value="BROFUL_00792"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1005"/>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00113"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004055">
        <property type="term" value="F:argininosuccinate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01999">
        <property type="entry name" value="Argininosuccinate_Synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00005">
        <property type="entry name" value="Arg_succ_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001518">
        <property type="entry name" value="Arginosuc_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018223">
        <property type="entry name" value="Arginosuc_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023434">
        <property type="entry name" value="Arginosuc_synth_type_1_subfam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024074">
        <property type="entry name" value="AS_cat/multimer_dom_body"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11587">
        <property type="entry name" value="PTHR11587"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00764">
        <property type="entry name" value="Arginosuc_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69864">
        <property type="entry name" value="SSF69864"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00032">
        <property type="entry name" value="argG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00564">
        <property type="entry name" value="ARGININOSUCCIN_SYN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="3 9" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="7 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="6 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="11"/>
            <end position="19"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="89"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="119"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="121"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="125"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="126"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="129"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="177"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="186"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="262"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="274"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012286"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00029916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO20477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="433" mass="48099" checksum="50229AACB0D0DA7A" modified="2015-11-11" version="1">MAEQRKKVVLAYSGGLDTSVAIKWIPEKYHMDVITLTIDLGAVKDLDAIREKALKIGAKKAIVLDAKDTFIKYFIFPALQAGALYEGVYPLATALGRPLIAKLLADVAHEEKADAVAHGCTGKGNDQVRLDVSLQVLNPKLQIIAPVREWKMTRDEEIRYAEEHNIPVEAKIKSPYSTDENLWGRSIECGILEDPWAEPPEEVFKWTKSAQDAPDDPEYLELHFEKGIPVALNEEEMDGVVLINTLNARGGKHGVGRIDHLENRLVGIKSREIYESPAAVILHAAHRALAGMIMTKDALRFKDIVSAQYADLIYNGLWFSAFHQDLVAYVLSSQRLMTGTVRVRLSKGTCTVVGRKSPLSLYSEKLATYQKEDTFDHSASLGFIKIYGLPVKIQAQKQMDVLAGKEALHLDSIMPPKMKSLGKAEGDKNKVKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX80</accession>
    <name>A0A0M2UX80_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RutC family protein YjgH</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">yjgH</name>
        <name evidence="1" type="ORF">BROFUL_01688</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000176">
        <property type="protein sequence ID" value="KKO19581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19581">
        <property type="protein sequence ID" value="KKO19581"/>
        <property type="gene ID" value="BROFUL_01688"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2093"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035959">
        <property type="entry name" value="RutC-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006175">
        <property type="entry name" value="YjgF/YER057c/UK114"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11803">
        <property type="entry name" value="PTHR11803"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01042">
        <property type="entry name" value="Ribonuc_L-PSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55298">
        <property type="entry name" value="SSF55298"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="140" mass="15857" checksum="DFCDE2389FEA4961" modified="2015-11-11" version="1">MSKIEFFVTPGYGDVNLKKFHYSQAFRDGNRVETSGQGGWNNDWEFPESLEKEIIQAFDNLERTLAMAGASWKHVVHVNSYHVPTATNFIGDEHLSIMTDQFRKRMGDRAPIWTCIGVPALGDPKMRVEIRVTAIIKGDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXC6</accession>
    <name>A0A0M2UXC6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01070</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20220">
        <property type="protein sequence ID" value="KKO20220"/>
        <property type="gene ID" value="BROFUL_01070"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="63" mass="7117" checksum="9467185BCA3FF6F9" modified="2015-11-11" version="1">MTKGTIVLTPFPFTDLSAIKRRPAVIVSSSEKTEINFWAVIFEIQNVYKITISMTGNTLKGRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXD2</accession>
    <name>A0A0M2UXD2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02167</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000214">
        <property type="protein sequence ID" value="KKO19124.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19124">
        <property type="protein sequence ID" value="KKO19124"/>
        <property type="gene ID" value="BROFUL_02167"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19124.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="42" mass="4660" checksum="7FE4DF9AC3E0B060" modified="2015-11-11" version="1">MIGKLLSLSMEKSIIPDISPKAIMIVAIALIFVILFTWKKEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXD6</accession>
    <name>A0A0M2UXD6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Threonine synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01080</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 4">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the threonine synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20230">
        <property type="protein sequence ID" value="KKO20230"/>
        <property type="gene ID" value="BROFUL_01080"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1346"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004450">
        <property type="entry name" value="Thr_synthase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00260">
        <property type="entry name" value="thrC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PALP" evidence="5">
        <location>
            <begin position="75"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="4">
        <location>
            <position position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR604450-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="416" mass="45072" checksum="413E6CE500AF6F6A" modified="2015-11-11" version="1">MGFVNGLKCRECGKPYPKEPLHVCSFCFGPLEVDYDYEGIKKVLTRKLIESRGKTMWRYQELLPVDGEPTVGAQVGFTPLVRANNLAKVLGVRELYVKNDSVNYPTFSFKDRVVSTALTKAKEFGYKTVGCATTGNLGNSVAAQAVQACLESYIIMPADLEQGKIVGTLIYGTNVIKVKGNYDNVNKLCSEIADKYGWAIVNVNLRPYYGEGSKTYGYEIMEQLGWKVPKHIIVPMAGGSLITKIEKAIKEFVKLGLIDEADTKLHGAQASGSAPITTAVKQETDVIKPVKPKTIAQSIAIGNPADGYYSVKSINVSGGWAEDVTDDELVEGIKLLARTEGIFTETAGGVTVAVTKKLIEQGKIPHDESIVISVTGNGLKTQEAVLDKLEAPKIINPSLAEFDAIMNKKVAVAQKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXR3</accession>
    <name>A0A0M2UXR3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00625</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20642">
        <property type="protein sequence ID" value="KKO20642"/>
        <property type="gene ID" value="BROFUL_00625"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004027">
        <property type="entry name" value="SEC_C_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02810">
        <property type="entry name" value="SEC-C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="30"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="288" mass="33691" checksum="474BA92E109505E7" modified="2015-11-11" version="1">MFITSEVESLYRKSKPSIKKLFYFSNHLSFQECREQIDQLKNNLTVAKEEHKASHEEVLNEFYVLSRFVDMLSSYCDLWKKIIKMEFSSSWNSLQDALDQLRQVKKFSSRNTNQAVSFFENQLLELEKLYPYRVFCSVGITVERFECSICGRDIDTFDCHHTRGELYRGQMAYGIAHNVVETDHVAMVKHPADKRCVVVYDDNGEQFELIRFLSELITTNKLQPFDFGELQFSKKKAKNHEFQKKKRNSPCYCGSGKKFKKCCISKEYVNGDHVDIVAKLTNIEEIIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXS2</accession>
    <name>A0A0M2UXS2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01524</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000157">
        <property type="protein sequence ID" value="KKO19766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19766">
        <property type="protein sequence ID" value="KKO19766"/>
        <property type="gene ID" value="BROFUL_01524"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="469" mass="53675" checksum="08C9230AAFE119F1" modified="2015-11-11" version="1">MSRTNNQHTGYAKLIDYWSPPPDAGEPIGCIATTYTFSPVFFEEDCLSRFLRMESDPDNDGSVFLVEREEKMSSVQCISVLVDQHHCKGARNLRWDIIPSRIPKAIMHAKISVLCWSNCVRVIVGSANLTEQGYRMNQEIFGSLDFHGGSDIPMAVLKSILDFLKEMVDRCTNSPDQPEVSRWHNFLTDIGKRTRNWGRIEPYRGGRDVRIHPLLLGSGKPDLFDQVRNYWNQASSRPPDYAWITSPFFDSPDSPNIPAKKIWEVLNQRGAASVCYYVHAEDNKDKKQLIVSAPKSLLESAPNQRSSVDIRFARVIECFDTKEIKTIRPLHMKSIWLQNDEWALYVIGSSNFTASGTGVGSTTNFEANIIYMASRTQNRAAVNMFEKSSLSKDYLAIDEYTVWDRQANEDEPDSECPALLPSVFGYAIYGRMSIWYRLSDSISVLKTYRRAFPYRRKRERKSFMTKENG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXZ8</accession>
    <name>A0A0M2UXZ8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8">Carbonic anhydrase</fullName>
            <ecNumber evidence="3 8">4.2.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_00303</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Reversible hydration of carbon dioxide.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>H(+) + hydrogencarbonate = CO2 + H2O</text>
            <dbReference type="Rhea" id="RHEA:10748"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="EC" id="4.2.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 8">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the alpha-carbonic anhydrase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.1" evidence="3 8"/>
    <dbReference type="EMBL" id="LAQJ01000035">
        <property type="protein sequence ID" value="KKO20968.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20968">
        <property type="protein sequence ID" value="KKO20968"/>
        <property type="gene ID" value="BROFUL_00303"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.367"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004089">
        <property type="term" value="F:carbonate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03124">
        <property type="entry name" value="alpha_CA_prokaryotic_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.200.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041891">
        <property type="entry name" value="Alpha_CA_prokaryot-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001148">
        <property type="entry name" value="CA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036398">
        <property type="entry name" value="CA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023561">
        <property type="entry name" value="Carbonic_anhydrase_a-class"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018338">
        <property type="entry name" value="Carbonic_anhydrase_a-class_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18952">
        <property type="entry name" value="PTHR18952"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00194">
        <property type="entry name" value="Carb_anhydrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01057">
        <property type="entry name" value="Carb_anhydrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51069">
        <property type="entry name" value="SSF51069"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00162">
        <property type="entry name" value="ALPHA_CA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51144">
        <property type="entry name" value="ALPHA_CA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0456">Lyase</keyword>
    <keyword evidence="5 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0732">Signal</keyword>
    <keyword evidence="6 8" id="KW-0862">Zinc</keyword>
    <feature type="signal peptide" evidence="8">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5025087142" description="Carbonic anhydrase" evidence="8">
        <location>
            <begin position="29"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="domain" description="Alpha-carbonic anhydrase" evidence="9">
        <location>
            <begin position="35"/>
            <end position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012925"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00014628"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU367011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO20968.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="259" mass="29557" checksum="D65D7A01ED26B337" modified="2015-11-11" version="1">MKIFQYILITPVFVFLPLLASAFQPAVAAEHTSSPHWDYEGDLGPDHWDKLVLEQWHCKIGDMQSPIGISVTEKAKLDEIVFHYYPVPLKIINNGHTIQINYEKGSFITIGHKKYDLVQFHFHTPSEHVIHGKHYEMEAHLVHKGEHEHIAVVAVLIGEGKENAFIKTLWSNFPKDVGQEHIVHDVKICASQLLPRNTTAYYTYPGSLTTPPCTENVTWLILKTPIEVSAVGLHKFRSLFKYDARPIQHVSGRVVRENN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY23</accession>
    <name>A0A0M2UY23_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00801</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000102">
        <property type="protein sequence ID" value="KKO20470.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20470">
        <property type="protein sequence ID" value="KKO20470"/>
        <property type="gene ID" value="BROFUL_00801"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20470.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="33" mass="3741" checksum="F29CF8B3C46C7C77" modified="2015-11-11" version="1">MNMLKQEAINAISHLPDTADIDELMYSLYSITV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY35</accession>
    <name>A0A0M2UY35_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Urea transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_00484</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the urea transporter family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000066">
        <property type="protein sequence ID" value="KKO20782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20782">
        <property type="protein sequence ID" value="KKO20782"/>
        <property type="gene ID" value="BROFUL_00484"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015204">
        <property type="term" value="F:urea transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029020">
        <property type="entry name" value="Ammonium/urea_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002934">
        <property type="entry name" value="Polymerase_NTP_transf_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004937">
        <property type="entry name" value="Urea_transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10464">
        <property type="entry name" value="PTHR10464"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01909">
        <property type="entry name" value="NTP_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03253">
        <property type="entry name" value="UT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="134"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="164"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="249"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="289"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="316"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="340"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="385"/>
            <end position="405"/>
        </location>
    </feature>
    <feature type="domain" description="NTP_transf_2" evidence="9">
        <location>
            <begin position="11"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005914"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO20782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="411" mass="45212" checksum="4B74C375FC57462F" modified="2015-11-11" version="1">MDKKAVLGILSHFRKALESKGTKIDKLILYGSYATGAYKEGSDIDVIVIAKNFSGKDYWERIDILSATIYEVFEPIEAVAMTPEEWEKKNRQLQITSKAAKLSMANAAMPQTEEKHSKPQIPPMMQTFRFAQNFATILLRGISQVFLLNNVITGVFFLSGVFYASWHMGVGTVIGALTGTLTALILKYSRNEINQGLYGYNSTLVCLAIFSFFGFTAPSIIAALLGSVLSTLITKVMRQRWKLPTYTAPFILSTWIVMFFIITFKIIPLQTAQFSHADGLEIIPAVSKGIGQVMFLEGVISGMLLFIGILVSSRIAAFYTLLGAVIGAVLAFLFSFPLNMINLGLFGFNGVLCGIALSREMWWKVIPAIAAIAVSVFMTCGIMNLGIIALTSPFVLSTWLVLWIGGKIKNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY46</accession>
    <name>A0A0M2UY46_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Molybdenum-pterin-binding protein 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">mopII</name>
        <name evidence="4" type="ORF">BROFUL_00476</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000063">
        <property type="protein sequence ID" value="KKO20797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20797">
        <property type="protein sequence ID" value="KKO20797"/>
        <property type="gene ID" value="BROFUL_00476"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.592"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015689">
        <property type="term" value="P:molybdate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004606">
        <property type="entry name" value="Mop_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005116">
        <property type="entry name" value="Transp-assoc_OB_typ1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03459">
        <property type="entry name" value="TOBE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00638">
        <property type="entry name" value="Mop"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51866">
        <property type="entry name" value="MOP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mop" evidence="3">
        <location>
            <begin position="2"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51866"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="69" mass="7467" checksum="11F64FCF4CFEC330" modified="2015-11-11" version="1">MKISARNILKGKVKEVKHGMVDTEVDIELPGGGEIVSVITKHSAETMKLAKGKEVYAVIKASNVMIMVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYA7</accession>
    <name>A0A0M2UYA7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Chorismate dehydratase</fullName>
            <ecNumber evidence="3">4.2.1.151</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Menaquinone biosynthetic enzyme MqnA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">mqnA</name>
        <name evidence="4" type="ORF">BROFUL_00427</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the dehydration of chorismate into 3-[(1-carboxyvinyl)oxy]benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>chorismate = 3-[(1-carboxyvinyl)-oxy]benzoate + H2O</text>
            <dbReference type="Rhea" id="RHEA:40051"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29748"/>
            <dbReference type="ChEBI" id="CHEBI:76981"/>
            <dbReference type="EC" id="4.2.1.151"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 3">Quinol/quinone metabolism; menaquinone biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the MqnA/MqnD family. MqnA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.151" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000057">
        <property type="protein sequence ID" value="KKO20842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20842">
        <property type="protein sequence ID" value="KKO20842"/>
        <property type="gene ID" value="BROFUL_00427"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00079"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016836">
        <property type="term" value="F:hydro-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009234">
        <property type="term" value="P:menaquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00995">
        <property type="entry name" value="MqnA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003773">
        <property type="entry name" value="Menaquinone_biosynth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030868">
        <property type="entry name" value="MqnA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37690">
        <property type="entry name" value="PTHR37690"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02621">
        <property type="entry name" value="VitK2_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-0474">Menaquinone biosynthesis</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="264" mass="29535" checksum="294ADC5A464BAA6C" modified="2015-11-11" version="1">MAKKIRIGVVPYMNAKPLIYRLNQHPGSIELSFEVPSLLPAMLKQDQIDAAIIPSIEYFRSGRYAIIPDICISSYEAVESVKIFSRVPIQQIRTAALDKSSLTSCALTKIILHERYHLSPQYTQWDKHDDISQADADAVLVIGDNAMKVSDNGYFTVDLGQAWYEYTGLPFVYAVWVVKKDSRIPGINKLLKDAKEGGMQAVQDLAAIESRRLQLTPERCLRYLTNSIRYNLGAEEIQGLQAFYRYAAALGLAPGGAEIVFNDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYG0</accession>
    <name>A0A0M2UYG0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Probable lipid II flippase MurJ</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">murJ</name>
        <name evidence="10" type="ORF">BROFUL_00148</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8 9">Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.</text>
    </comment>
    <comment type="pathway">
        <text evidence="8">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8 9">Belongs to the MurJ/MviN family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000017">
        <property type="protein sequence ID" value="KKO21103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21103">
        <property type="protein sequence ID" value="KKO21103"/>
        <property type="gene ID" value="BROFUL_00148"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.186"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015648">
        <property type="term" value="F:lipid-linked peptidoglycan transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd13123">
        <property type="entry name" value="MATE_MurJ_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02078">
        <property type="entry name" value="MurJ_MviN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004268">
        <property type="entry name" value="MurJ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03023">
        <property type="entry name" value="MurJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002869">
        <property type="entry name" value="MviN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01806">
        <property type="entry name" value="VIRFACTRMVIN"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01695">
        <property type="entry name" value="murJ_mviN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 8 9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 8 9" id="KW-0133">Cell shape</keyword>
    <keyword evidence="8 9" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="7 8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 8 9" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="8 9" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="84"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="125"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="156"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="186"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="231"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="295"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="336"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="376"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="433"/>
            <end position="452"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="464"/>
            <end position="485"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="505"/>
            <end position="523"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRNR" id="PIRNR002869"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO21103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="539" mass="59398" checksum="73FD2EE16D1FF5DA" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYN0</accession>
    <name>A0A0M2UYN0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">FGE-sulfatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00583</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000081">
        <property type="protein sequence ID" value="KKO20695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20695">
        <property type="protein sequence ID" value="KKO20695"/>
        <property type="gene ID" value="BROFUL_00583"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016187">
        <property type="entry name" value="CTDL_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005532">
        <property type="entry name" value="SUMF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042095">
        <property type="entry name" value="SUMF_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03781">
        <property type="entry name" value="FGE-sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56436">
        <property type="entry name" value="SSF56436"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FGE-sulfatase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="226" mass="25681" checksum="1BABBA41CDA26C3B" modified="2015-11-11" version="1">MVGIAWYEALACTRWLTEAWRKAGLLPEGWEVRLPSEAEWEKAARGDIEIPAQPQVVSIGNIKANTRLSMKKNETSRRLYPWSNDPDPNCANYNETGIGATSAVGCFPAGASSYGCEEMAGNVWEWTRSLYGGYPYDPKDGRENLDASTDELRVVRGGSFYDSHWGVRCSARDRDYPDYRYYFVCFRVMLSPFISGLCVSEGFLSLWHEFLYRHHDRTGVFVVKSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYV7</accession>
    <name>A0A0M2UYV7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00466</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000061">
        <property type="protein sequence ID" value="KKO20810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20810">
        <property type="protein sequence ID" value="KKO20810"/>
        <property type="gene ID" value="BROFUL_00466"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0129">CBS domain</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CBS" evidence="2">
        <location>
            <begin position="7"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="2">
        <location>
            <begin position="93"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="148" mass="16588" checksum="9EB0246BD1B9CBEA" modified="2015-11-11" version="1">MKVKDIMDTAPDLLRVSDTFAHLITILDQVKYHVIYVVDDGNKLAGVLTESDILKVLIPKYLTIDESLISVMDVNYFEKKCRESKDLTVTDIMTKSLITVSEDEPLIKAAALIVVHKIHSLPVVRNGNIVGIVPRQILLKHITKILAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYX8</accession>
    <name>A0A0M2UYX8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 13">Membrane protein insertase YidC</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12 13">Foldase YidC</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11 13">Membrane integrase YidC</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">Membrane protein YidC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">yidC</name>
        <name evidence="16" type="ORF">BROFUL_00244</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13">Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.</text>
    </comment>
    <comment type="subunit">
        <text evidence="13">Interacts with the Sec translocase complex via SecD. Specifically interacts with transmembrane segments of nascent integral membrane proteins during membrane integration.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="13">Cell membrane</location>
            <topology evidence="13">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 13">Belongs to the OXA1/ALB3/YidC family. Type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000030">
        <property type="protein sequence ID" value="KKO21027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21027">
        <property type="protein sequence ID" value="KKO21027"/>
        <property type="gene ID" value="BROFUL_00244"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032977">
        <property type="term" value="F:membrane insertase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.98.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01810">
        <property type="entry name" value="YidC_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019998">
        <property type="entry name" value="Membr_insert_YidC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028055">
        <property type="entry name" value="Membr_insert_YidC/Oxa1_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028053">
        <property type="entry name" value="Membr_insert_YidC_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001708">
        <property type="entry name" value="YidC/ALB3/OXA1/COX18"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038210">
        <property type="entry name" value="YidC_periplasmic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038221">
        <property type="entry name" value="YidC_periplasmic_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12428">
        <property type="entry name" value="PTHR12428"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02096">
        <property type="entry name" value="60KD_IMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14849">
        <property type="entry name" value="YidC_periplas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00701">
        <property type="entry name" value="60KDINNERMP"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01900">
        <property type="entry name" value="YIDCPROTEIN"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03593">
        <property type="entry name" value="yidC_nterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03592">
        <property type="entry name" value="yidC_oxa1_cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 13" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10 13" id="KW-0143">Chaperone</keyword>
    <keyword evidence="9 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 13" id="KW-0653">Protein transport</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 13" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4 13" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="327"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="357"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="418"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="472"/>
            <end position="494"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="515"/>
            <end position="530"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="536"/>
            <end position="552"/>
        </location>
    </feature>
    <feature type="domain" description="YidC_periplas" evidence="15">
        <location>
            <begin position="87"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="14">
        <location>
            <begin position="45"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00015325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00033245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00033342"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF14849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="KKO21027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="561" mass="63206" checksum="6BCD8499C8040B7D" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYZ6</accession>
    <name>A0A0M2UYZ6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">GMP synthase (glutamine-hydrolyzing)</fullName>
            <ecNumber evidence="3">6.3.5.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_00430</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the synthesis of GMP from XMP.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Purine metabolism; GMP biosynthesis; GMP from XMP (L-Gln route): step 1/1.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.2" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000057">
        <property type="protein sequence ID" value="KKO20845.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20845">
        <property type="protein sequence ID" value="KKO20845"/>
        <property type="gene ID" value="BROFUL_00430"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.535"/>
    <dbReference type="UniPathway" id="UPA00189">
        <property type="reaction ID" value="UER00296"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003922">
        <property type="term" value="F:GMP synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016462">
        <property type="term" value="F:pyrophosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01742">
        <property type="entry name" value="GATase1_GMP_Synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01997">
        <property type="entry name" value="GMP_synthase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001674">
        <property type="entry name" value="GMP_synth_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004739">
        <property type="entry name" value="GMP_synth_GATase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025777">
        <property type="entry name" value="GMPS_ATP_PPase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022310">
        <property type="entry name" value="NAD/GMP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02540">
        <property type="entry name" value="NAD_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00884">
        <property type="entry name" value="guaA_Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00888">
        <property type="entry name" value="guaA_Nterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51553">
        <property type="entry name" value="GMPS_ATP_PPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="5 9" id="KW-0332">GMP biosynthesis</keyword>
    <keyword evidence="4 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 9" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GMPS ATP-PPase" evidence="10">
        <location>
            <begin position="199"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="226"/>
            <end position="232"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005153"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00886"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO20845.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="471" mass="52343" checksum="2C5C92B1FFDBDA17" modified="2015-11-11" version="1">MTEDKKEKILILDFGSQYAQLIARRVRENNVYSEIVSHKITVAEIKKNKPRGIILSGGPASVYVKNAPRCEEEIAAMGIPILGICYGMQLGCQMLGATVKPTATREYGRTACTVNHESKLFKTMAKETTVWMSHGDQVVELSADFESLAFTQSCPYAAVKHKKKTFYGVQFHPEVTHTPQGGQIIRNFLYEICGCAGDWEMHSYIEHALPDIRRQVGEGRVVCGLSGGVDSAVTAALIYKAIGNHLSCIFVDNGLLRNNEAEEVVKTFKENFTVDLHAIDARERFLDKLKGVTDPEKKRKIIGHEFIEVFKEEAKKISQAKFLAQGTLYPDVIESIPAHGGPTVVIKSHHNVGGLPAELGFELIEPLRFLFKDEVRKIGEELGLPEELVWRHPFPGPGLAIRIIGEVTKPRLEILRNADRIVIGEIHKAGSIVPLPSVLPYSFPSARWGSWETKGAMKTLSPSAPWRQPIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ45</accession>
    <name>A0A0M2UZ45_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00179</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000018">
        <property type="protein sequence ID" value="KKO21097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21097">
        <property type="protein sequence ID" value="KKO21097"/>
        <property type="gene ID" value="BROFUL_00179"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="SSF56672"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="48"/>
            <end position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="571" mass="65940" checksum="B509ECCDD32FF764" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZM1</accession>
    <name>A0A0M2UZM1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cell surface glycoprotein (S-layer protein)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">flu</name>
        <name evidence="2" type="ORF">BROFUL_00211</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000026">
        <property type="protein sequence ID" value="KKO21055.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21055">
        <property type="protein sequence ID" value="KKO21055"/>
        <property type="gene ID" value="BROFUL_00211"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.258"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010620">
        <property type="entry name" value="SBBP_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06739">
        <property type="entry name" value="SBBP"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644117" evidence="1">
        <location>
            <begin position="21"/>
            <end position="807"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21055.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="807" mass="87005" checksum="2DA71B48DAF85664" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0K9</accession>
    <name>A0A0M2V0K9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01085</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20234.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20234">
        <property type="protein sequence ID" value="KKO20234"/>
        <property type="gene ID" value="BROFUL_01085"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644219" evidence="1">
        <location>
            <begin position="25"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20234.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="217" mass="23876" checksum="BFD691EE39E1386B" modified="2015-11-11" version="1">MKYRVTKRSCSVFFLMLLNACVFGATTNTWTQSTESDFSKGTTQNVSVSNKGEIRLAPRIEVVAGLKSAFVWSMAADLQNRVFAGTGDPGVVYLIKDGSEAVELFKSPELYIQSLATDTSGNLYAGTAPRGIIYKINTRGEASVFCNLPVSYIWDMSFDNNSNLFAATGNDGILFKISPDGIPSVFLIHRRPISLTCCMTGMTISMWAQNRMVWCIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0L5</accession>
    <name>A0A0M2V0L5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">4Fe-4S ferredoxin iron-sulfur binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01090</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20239.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20239">
        <property type="protein sequence ID" value="KKO20239"/>
        <property type="gene ID" value="BROFUL_01090"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12801">
        <property type="entry name" value="Fer4_5"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="42"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="107"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="165"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="198"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="228"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="271"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="299"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="383"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="320"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="350"/>
            <end position="377"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20239.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="440" mass="50248" checksum="BE1F86C4E40FC9D8" modified="2015-11-11" version="1">MRYLKETKQPQSLPASQQDLYLETSPKKTVKSKRKRFNSQKLRWAVQIAFFIVVLVIGWQFYTFVKYCEAGGKGFYLPRPPGVESFLPISALMGTKYFFGTGKINPIHPAGFVIFGTLLLTAFFFRRGFCGWICPIGTLSEWEWRFGDWFLKKLPQRVSSIMRNVPTAFTAGLSLVFTPIIALLIVEVITMESFKSPLFRYLTPAYVLAMVLPFVIPRKIWPDKVNDILARAWKFSILAFFIHVIIIKMPIAQLEVLYTRAPFVRVADVKMLKFFMNMSGMALSVILTILVISLINKNYWCRFFCPYGALLGIIGYASPMRITRDTGKCIDCGKCTKACAMHILVEKKKHVLTHECVACYDCVNACPVNGALDMKLIGDRKKIHYGLYAIMLVGLYVVVTNTARATGHWHTKISDAEYIMRISELNHPKYLHKAGQFEME</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0M4</accession>
    <name>A0A0M2V0M4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Ferrous iron transport protein B</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="primary">feoB</name>
        <name evidence="13" type="ORF">BROFUL_01009</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Probable transporter of a GTP-driven Fe(2+) uptake system.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cell membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000119">
        <property type="protein sequence ID" value="KKO20264.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20264">
        <property type="protein sequence ID" value="KKO20264"/>
        <property type="gene ID" value="BROFUL_01009"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1266"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015093">
        <property type="term" value="F:ferrous iron transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055072">
        <property type="term" value="P:iron ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01879">
        <property type="entry name" value="FeoB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003373">
        <property type="entry name" value="Fe2_transport_prot-B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011640">
        <property type="entry name" value="Fe2_transport_prot_B_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041069">
        <property type="entry name" value="FeoB_Cyto"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030389">
        <property type="entry name" value="G_FEOB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011642">
        <property type="entry name" value="Gate_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07664">
        <property type="entry name" value="FeoB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17910">
        <property type="entry name" value="FeoB_Cyto"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02421">
        <property type="entry name" value="FeoB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07670">
        <property type="entry name" value="Gate"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00326">
        <property type="entry name" value="GTP1OBG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00437">
        <property type="entry name" value="feoB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51711">
        <property type="entry name" value="G_FEOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9 11" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="8" id="KW-0406">Ion transport</keyword>
    <keyword evidence="7 11" id="KW-0408">Iron</keyword>
    <keyword evidence="11" id="KW-0410">Iron transport</keyword>
    <keyword evidence="10 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 11" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="280"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="314"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="354"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="396"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="434"/>
            <end position="452"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="458"/>
            <end position="475"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="513"/>
            <end position="531"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="673"/>
            <end position="694"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="701"/>
            <end position="723"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="735"/>
            <end position="755"/>
        </location>
    </feature>
    <feature type="domain" description="FeoB-type G" evidence="12">
        <location>
            <begin position="3"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU362098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51711"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO20264.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="771" mass="84084" checksum="05576A41A9AE465B" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0Z6</accession>
    <name>A0A0M2V0Z6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00439</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000058">
        <property type="protein sequence ID" value="KKO20826.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20826">
        <property type="protein sequence ID" value="KKO20826"/>
        <property type="gene ID" value="BROFUL_00439"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20826.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="49" mass="5971" checksum="376C10E3FA69EF47" modified="2015-11-11" version="1">MRFLIVDNNQDDREQIKRNFQEEFYAPEFLEITKREDFDEVIGKGIFDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V128</accession>
    <name>A0A0M2V128_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative small GTP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00875</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000106">
        <property type="protein sequence ID" value="KKO20404.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20404">
        <property type="protein sequence ID" value="KKO20404"/>
        <property type="gene ID" value="BROFUL_00875"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1107"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015093">
        <property type="term" value="F:ferrous iron transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01879">
        <property type="entry name" value="FeoB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011640">
        <property type="entry name" value="Fe2_transport_prot_B_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041069">
        <property type="entry name" value="FeoB_Cyto"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030389">
        <property type="entry name" value="G_FEOB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011642">
        <property type="entry name" value="Gate_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07664">
        <property type="entry name" value="FeoB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17910">
        <property type="entry name" value="FeoB_Cyto"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02421">
        <property type="entry name" value="FeoB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07670">
        <property type="entry name" value="Gate"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00326">
        <property type="entry name" value="GTP1OBG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51711">
        <property type="entry name" value="G_FEOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0406">Ion transport</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="281"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="317"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="349"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="458"/>
            <end position="479"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="534"/>
            <end position="557"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="563"/>
            <end position="582"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="627"/>
            <end position="647"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="701"/>
            <end position="719"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="731"/>
            <end position="752"/>
        </location>
    </feature>
    <feature type="domain" description="FeoB-type G" evidence="3">
        <location>
            <begin position="8"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51711"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20404.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="753" mass="83213" checksum="A11CFB604979FA21" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V158</accession>
    <name>A0A0M2V158_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00834</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000104">
        <property type="protein sequence ID" value="KKO20449.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20449">
        <property type="protein sequence ID" value="KKO20449"/>
        <property type="gene ID" value="BROFUL_00834"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="SSF49265"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="326"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="337"/>
            <end position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20449.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="351" mass="36881" checksum="360E37CDF869BFCE" modified="2015-11-11" version="1">MTQNGAITTISAEKLTPEGSQLLVETAACLKLVDKALFQTIPTIEDLKAATGMLEKLGEIKVVPTRLSISVGGTHTVHVINSKAITYASDDIRVVTVDNISDFERGTDRIVIKGVGPGSSTVTVFNVLGRSGNFAVDVVIPKPTVETGTATSMTANSVTLHGTVTANSDASTNAWFDYGTQSGNYSRKKDAQPGTITGTGDTPVTAEISDLKPATTYHYRIAVKNSADTAYGSENSFVTKISTPTVETGTATNTTANSATLHGMVTANGASTTAWFDYGTVSGAYGSQSDKIEVTDKEEKLINVEIKGLLLGATYYYRIAAENTLGKSEGSEESFKTKPIETVSPTPTVAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1A2</accession>
    <name>A0A0M2V1A2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PHB domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00338</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000042">
        <property type="protein sequence ID" value="KKO20936.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20936">
        <property type="protein sequence ID" value="KKO20936"/>
        <property type="gene ID" value="BROFUL_00338"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.415"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001107">
        <property type="entry name" value="Band_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036013">
        <property type="entry name" value="Band_7/SPFH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018080">
        <property type="entry name" value="Band_7/stomatin-like_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01145">
        <property type="entry name" value="Band_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00244">
        <property type="entry name" value="PHB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117892">
        <property type="entry name" value="SSF117892"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01270">
        <property type="entry name" value="BAND_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PHB" evidence="1">
        <location>
            <begin position="20"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20936.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="331" mass="37456" checksum="F02D1D9FA40DD899" modified="2015-11-11" version="1">MPPIIILSAVVLLFIIFVAFGFRLISQSETMVIERLGRYHRTLDSGINFIFPITDRTRTIEWKYIKADVDGKTIVRKGTIKRIDLRETVYDFPRQTVITKDNVTIELNALLYFQITDAKRAVYEINNLPDAIEKLTQTTLRNVIGELELDQTLASRDTINTKLRAILDDATGKWGVKINRVELQDIVPPDQIRDAMEKQMRAERDRRAAILEAEGKKQASILQAEGLRNAEVEKAQGEKQAAILIADGQAEARIRTAKAEAEAIRLVTESLARTKTDPAHYLLGVKYVETLREMVSGKNNKVVYLPFEATALFGSLGGVRELFQKTDEKRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1A3</accession>
    <name>A0A0M2V1A3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Phosphate-selective porin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00786</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000099">
        <property type="protein sequence ID" value="KKO20499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20499">
        <property type="protein sequence ID" value="KKO20499"/>
        <property type="gene ID" value="BROFUL_00786"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023614">
        <property type="entry name" value="Porin_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644362" evidence="2">
        <location>
            <begin position="22"/>
            <end position="499"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="44"/>
            <end position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="499" mass="57300" checksum="B10DE29E72E076FD" modified="2015-11-11" version="1">MRSKGFCYGLSLAIAFCAVYADNVAQNARAQDVVQSQGTSEGGMDDLKRQLKQMEEAFLVQQKMMKQMEAMALSQQEQIKELKNHIESISERPVAVAKEEIKKEVKQEMKQEVHQEVGNYLASNEAREKLGLGLPGKNEPVNGYYLPDKAKASIGFQTRDGKYSLNVGFRFQTRFTYKDKDEDFDEGDITDIDVRRARLCFGGNIYSKDLFYNVEIDADSFDVNLRDYYIWWTPAAAEEALSIKGGYFKVPANRQWNSSGFSLLLQDRSIASDNFKQDRDYGLDIFGKPFDGHMEYHAAVFRGAGQNPSKAFGRDENVDNELMYVLTARYYPFGWYQSYNLATGWDETDLKYEEQLKAVIGASFVYNAKEKDKKLDDTNSAIGNVDLGMRYRGFTWDSEYYIRENDPEGDGDTITSDGFYTQAGYFVLPKKLELAARYSVLDPNEDVRDDVQTEYTVGINYYFRGHRQQIQADVGHFVTETTETDKNENRIRLQYQMIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1E3</accession>
    <name>A0A0M2V1E3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00733</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000092">
        <property type="protein sequence ID" value="KKO20539.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20539">
        <property type="protein sequence ID" value="KKO20539"/>
        <property type="gene ID" value="BROFUL_00733"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20539.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="241" mass="27959" checksum="76B159BF216D7ABC" modified="2015-11-11" version="1">MKAKQCLRIVLASPGDVKEERKVMESVIDELNRGVAADRNLLLELSRWETDAYPGFHADGPQGLIDPILRIEDCDILLGIFWKRFGTPTRDAQSGTGHEIRTAIRGWRQNNRPQIMMYFKETPFFPQTTEEHEQFGLVIRFRNEFPKEGLYGTFQDVSQFERLARQHMSNFIRHEYKLTGAGAGWSLQRSETQDFMRNYCKRIQLKFSSMYFFGSQCQHAGKSGETFDHMASIDEALCRCI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1Q7</accession>
    <name>A0A0M2V1Q7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">EamA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00655</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000087">
        <property type="protein sequence ID" value="KKO20619.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20619">
        <property type="protein sequence ID" value="KKO20619"/>
        <property type="gene ID" value="BROFUL_00655"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="63"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="96"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="120"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="4"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20619.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="138" mass="14897" checksum="687E2588BA807659" modified="2015-11-11" version="1">MEAFFLALLTAFIWGFVPFLEKVGLSSVEPTAAYLIRCSGVFLGVVILIAFTPQFPSFGKMGIKAIFFLVLAGILAGVVAQLVFYKALKTGEISKIIPVTCCYPVFSFLLGWIFLGEEITLSKAVGVLLILGGILLLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1S3</accession>
    <name>A0A0M2V1S3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">BsuBI_PstI_RE domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00622</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20639.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20639">
        <property type="protein sequence ID" value="KKO20639"/>
        <property type="gene ID" value="BROFUL_00622"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009036">
        <property type="term" value="F:type II site-specific deoxyribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041963">
        <property type="entry name" value="BsuBI/PstI_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009528">
        <property type="entry name" value="Restrct_endonuc_II_BsuBI_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06616">
        <property type="entry name" value="BsuBI_PstI_RE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BsuBI_PstI_RE" evidence="1">
        <location>
            <begin position="2"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06616"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20639.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="37" mass="4513" checksum="91D198089914D73B" modified="2015-11-11" version="1">MMKYLEEISWETEVWIAETPTHLIHFNGERFLGPYED</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V246</accession>
    <name>A0A0M2V246_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PLDc_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00045</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000007">
        <property type="protein sequence ID" value="KKO21206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21206">
        <property type="protein sequence ID" value="KKO21206"/>
        <property type="gene ID" value="BROFUL_00045"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025202">
        <property type="entry name" value="PLD-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13091">
        <property type="entry name" value="PLDc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PLDc_2" evidence="1">
        <location>
            <begin position="96"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="395" mass="44840" checksum="1BCDADA4F19302C6" modified="2015-11-11" version="1">MPCQRPSWFTGKQWVCSIAMKNLSFLRVFYPPCNLHQESGILEVVTLSTERVWLRLYRMVKKLCMCVMLLWVSASLHAGDYVSYVPQGSVEERLREGIAYAQQGINLCIHDFAATDVEQELVAARDRGVRVRIVILEQLPGRESGLLTETLIRRGFDIRVHRTPTGNDPVEDFIVLDDRVLITGAYNWLAYRNRNIGNEVQFYYDPERISRHGNTFCRLFAGGDPISYDDSQLKVVATKNSPASPRLSDNPKGGQPILHHGMNKGTMTPVSTPETVAAAPAKDSLDISFEDLDRQFGKRSTLSRAEKKKLWKNFKGKYVRWQGVVVYKGMGRVDWNRVGVSRQDGKKAEVEILFDWRMFDEVVSIKIGNTITYSGKLVSRAGIDAPYRLEDGDIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V266</accession>
    <name>A0A0M2V266_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Oligoendopeptidase F</fullName>
            <ecNumber evidence="6">3.4.24.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_00455</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Has oligopeptidase activity and degrades a variety of small bioactive peptides.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="6">Binds 1 zinc ion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the peptidase M3B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.24.-" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000060">
        <property type="protein sequence ID" value="KKO20814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20814">
        <property type="protein sequence ID" value="KKO20814"/>
        <property type="gene ID" value="BROFUL_00455"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.570"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1370.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013647">
        <property type="entry name" value="OligopepF_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042088">
        <property type="entry name" value="OligoPept_F_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045090">
        <property type="entry name" value="Pept_M3A_M3B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001567">
        <property type="entry name" value="Pept_M3A_M3B_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004438">
        <property type="entry name" value="Peptidase_M3B"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11804">
        <property type="entry name" value="PTHR11804"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01432">
        <property type="entry name" value="Peptidase_M3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08439">
        <property type="entry name" value="Peptidase_M3_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00181">
        <property type="entry name" value="pepF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 6" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="1 6" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Peptidase_M3_N" evidence="8">
        <location>
            <begin position="113"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M3" evidence="7">
        <location>
            <begin position="202"/>
            <end position="572"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU368091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF08439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20814.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="594" mass="68765" checksum="CE4191F4E56B1798" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V280</accession>
    <name>A0A0M2V280_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Isocitrate dehydrogenase [NADP]</fullName>
            <ecNumber evidence="3">1.1.1.42</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00442</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>D-threo-isocitrate + NADP(+) = 2-oxoglutarate + CO2 + NADPH</text>
            <dbReference type="Rhea" id="RHEA:19629"/>
            <dbReference type="ChEBI" id="CHEBI:15562"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.42"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="3">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.42" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000058">
        <property type="protein sequence ID" value="KKO20829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20829">
        <property type="protein sequence ID" value="KKO20829"/>
        <property type="gene ID" value="BROFUL_00442"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.552"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004450">
        <property type="term" value="F:isocitrate dehydrogenase (NADP+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006097">
        <property type="term" value="P:glyoxylate cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019818">
        <property type="entry name" value="IsoCit/isopropylmalate_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004439">
        <property type="entry name" value="Isocitrate_DH_NADP_dimer_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024084">
        <property type="entry name" value="IsoPropMal-DH-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43504">
        <property type="entry name" value="PTHR43504"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00180">
        <property type="entry name" value="Iso_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01329">
        <property type="entry name" value="Iso_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00183">
        <property type="entry name" value="prok_nadp_idh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00470">
        <property type="entry name" value="IDH_IMDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0329">Glyoxylate bypass</keyword>
    <keyword evidence="3" id="KW-0464">Manganese</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0521">NADP</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="domain" description="Iso_dh" evidence="4">
        <location>
            <begin position="25"/>
            <end position="405"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU004446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM01329"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="411" mass="45496" checksum="4EC32C747B9A1252" modified="2015-11-11" version="1">MKSISGCGEVIKIEKNRLVVPDNPVIPFIRGDGTGPDIWDASVRVFDAAVSKAYKTKKCISWQEIYAGECAFKERGEWLPKETLNAIRKYKVAIKGPLTTPVGGGIRSLNVALRQELDLYACVRPVRYFEGVPCPVKSPEKLNVVIFRENTEDVYAGIEYKKGSSEAKKLIAFLDQELGKKIRRDSGIGIKPMSVVGSKRLVRRAIQYAIDKGLRSVTLMHKGNIMKFTEGAFREWGYEVAKEEFAKYIITEDDVFRKHTGVVPKGKIVIKDRIADAMFQQVLLRPEEYDVIATPNLNGDYISDACAAQVGGLGMAPGANIGDKAAVFEATHGTAPKYAGQDKVNPGSVILSGVMMFEHLGWSDAATMIVCALEKTIRRKTVTYDLERQMTGARLVKCSEFADEIIRNMDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V281</accession>
    <name>A0A0M2V281_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Cytochrome c peroxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_00026</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
        <text evidence="6">Binds 2 heme groups.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="6">Binds 2 heme groups per subunit.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000006">
        <property type="protein sequence ID" value="KKO21231.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21231">
        <property type="protein sequence ID" value="KKO21231"/>
        <property type="gene ID" value="BROFUL_00026"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.36"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004852">
        <property type="entry name" value="Di-haem_cyt_c_peroxidsae"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026259">
        <property type="entry name" value="MauG/Cytc_peroxidase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03150">
        <property type="entry name" value="CCP_MauG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00034">
        <property type="entry name" value="Cytochrom_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000294">
        <property type="entry name" value="Cytochrome-c_peroxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 6 8" id="KW-0349">Heme</keyword>
    <keyword evidence="5 7 8" id="KW-0408">Iron</keyword>
    <keyword evidence="3 7 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-0574">Periplasm</keyword>
    <keyword evidence="10" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cytochrome c" evidence="9">
        <location>
            <begin position="52"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="9">
        <location>
            <begin position="204"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="binding site" description="covalent" evidence="6">
        <location>
            <position position="74"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" description="covalent" evidence="6">
        <location>
            <position position="77"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="7">
        <location>
            <position position="78"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>1</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" description="covalent" evidence="6">
        <location>
            <position position="219"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" description="covalent" evidence="6">
        <location>
            <position position="222"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="7">
        <location>
            <position position="223"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>2</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000294-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000294-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO21231.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="350" mass="38302" checksum="D82714226E4ECFDF" modified="2015-11-11" version="1">MNRIRIAKSFFCGVARLVLTIQGIYAGDFPLFPPIGPLPPVTIPADNPQTEAKVALGKQLYFDPRLSGNNWISCATCHNPVLGFADGLPRMLGGPASKEGGRHSPTVMNTAYNEFQFWDGRAATLEEQALGPIQNPNEMFETLDNVVRKLSGIPEYVKAFQEVFGTGVTADGIAKAIAAFERTIVFANAPFDRYMQGDVHAMSESARRGMDLFQGKAECIKCHNGPNFTDNKFHNIGVPADGPLKEDLGRYNVTRNESDKGAFKTPTLRNITETGPYMHNGFFPTLFEVVQFYNGGGGRSENKSADIHALNLTGQEASDLIEFMKALTGELVQITYQSAPLTFPRVPVGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V310</accession>
    <name>A0A0M2V310_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">O-Antigen ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00206</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000025">
        <property type="protein sequence ID" value="KKO21069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21069">
        <property type="protein sequence ID" value="KKO21069"/>
        <property type="gene ID" value="BROFUL_00206"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007016">
        <property type="entry name" value="O-antigen_ligase-related"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04932">
        <property type="entry name" value="Wzy_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="2 3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="15"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="41"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="94"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="127"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="169"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="198"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="236"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="267"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="307"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="393"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="435"/>
            <end position="458"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="464"/>
            <end position="481"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO21069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="489" mass="55133" checksum="E84442445246B921" modified="2015-11-11" version="1">MENVLINTLKGKTSSVVKCVSVICLSVSLGVAFVRLSLFHFACFLVSLIFPFLFFQPYIFLLLLTGILVLFPNVGFGVREGVTVFNIYGKGSGVLPIPLFSVGLFCLFLSAYIKVTSTRIRSGSKLIFLDWSIILLLFFSVSYILVAFLVNPKGISMDGFRHAVSQRGVMGYVQFGIMYFIVNLIISEKGQLLQLNRLIFTLALGRAAYGIIRFLFFGGDPANFYANYEGRQVKLTFFDIYDSAFFMYIFSFCFINILKLLNQKKHLIFAILLSGINIVFSFRRTVWIGFIFSLLYLSFNLDKGKRIFVYGLLLLIFVISIPIASSRFDSQHSIFSDLSLDYSSSRGMGRFGELFYAIKTIAKSPLYGLGATGRYDAPTVFQWRVSTEIVHSTIVHIALKMGILGLILFFLIVIGVYTLRSWNRESTLHDRDCAVIFYSAYSTLIFLLPDIFFAPSLIELRHSVGLGLFVGLVSVSARFLGQEHKLRVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V3D3</accession>
    <name>A0A0M2V3D3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00093</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000010">
        <property type="protein sequence ID" value="KKO21174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21174">
        <property type="protein sequence ID" value="KKO21174"/>
        <property type="gene ID" value="BROFUL_00093"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008023">
        <property type="entry name" value="DUF748"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05359">
        <property type="entry name" value="DUF748"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="273"/>
            <end position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="327" mass="37447" checksum="DF3E1D9577546FA6" modified="2015-11-11" version="1">MTLQNFVLHERDNSRFVGFDELYLNFQTSSLFRRTYTFAQFRLTVPYGCVKILHDKTFNFQDLLPSAKENEQSRQGSSVPLLIQRLVIDRGQATFEDFSRKTPYKAQIDDVSVSLLNFTTQPNREGLYELEATAGEGQALKYRGSISMSPLYSKGRLELSGIRLRNLWSYLQDQLLFEIKDGQLDVSGNYEFDATGEKPNFLVHQGKITVRSLTVAQKEDKEEVLMVPHFTVTGADIDYGKKQIKIEDIQSNSSKVNGIRDEKGGMNLLTMFQPKPAEGQGKEQPNEPQKSDPWRISIGKFEIAIMQFISRILAHSLRQTLMYHQLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPT9</accession>
    <name>A0A0M2UPT9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03424</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000312">
        <property type="protein sequence ID" value="KKO17912.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17912">
        <property type="protein sequence ID" value="KKO17912"/>
        <property type="gene ID" value="BROFUL_03424"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO17912.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="34" mass="3822" checksum="CAEBF6B3D3A98199" modified="2015-11-11" version="1" fragment="single">MPSWGVNTFIPIYGKCFALTQCGNIVIMVIFQKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ58</accession>
    <name>A0A0M2UQ58_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8 10">Adenylosuccinate synthetase</fullName>
            <shortName evidence="8">AMPSase</shortName>
            <shortName evidence="8">AdSS</shortName>
            <ecNumber evidence="8 10">6.3.4.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">IMP--aspartate ligase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">purA</name>
        <name evidence="11" type="ORF">BROFUL_03295</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8 10">
            <text>GTP + IMP + L-aspartate = GDP + 2 H(+) + N(6)-(1,2-dicarboxyethyl)-AMP + phosphate</text>
            <dbReference type="Rhea" id="RHEA:15753"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57567"/>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
            <dbReference type="EC" id="6.3.4.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="8">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="8 10">Purine metabolism; AMP biosynthesis via de novo pathway; AMP from IMP: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1 8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8 10">Belongs to the adenylosuccinate synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.4" evidence="8 10"/>
    <dbReference type="EMBL" id="LAQJ01000301">
        <property type="protein sequence ID" value="KKO18017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18017">
        <property type="protein sequence ID" value="KKO18017"/>
        <property type="gene ID" value="BROFUL_03295"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4063"/>
    <dbReference type="UniPathway" id="UPA00075">
        <property type="reaction ID" value="UER00335"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004019">
        <property type="term" value="F:adenylosuccinate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044208">
        <property type="term" value="P:'de novo' AMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd03108">
        <property type="entry name" value="AdSS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.170.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00011">
        <property type="entry name" value="Adenylosucc_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018220">
        <property type="entry name" value="Adenylosuccin_syn_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033128">
        <property type="entry name" value="Adenylosuccin_syn_Lys_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042109">
        <property type="entry name" value="Adenylosuccinate_synth_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042110">
        <property type="entry name" value="Adenylosuccinate_synth_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042111">
        <property type="entry name" value="Adenylosuccinate_synth_dom3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001114">
        <property type="entry name" value="Adenylosuccinate_synthetase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11846">
        <property type="entry name" value="PTHR11846"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00709">
        <property type="entry name" value="Adenylsucc_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00788">
        <property type="entry name" value="Adenylsucc_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00184">
        <property type="entry name" value="purA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01266">
        <property type="entry name" value="ADENYLOSUCCIN_SYN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00513">
        <property type="entry name" value="ADENYLOSUCCIN_SYN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 8 10" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="2 8 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="6 8 10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 8 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 8 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 8 10" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="IMP binding" evidence="8">
        <location>
            <begin position="19"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="IMP binding" evidence="8">
        <location>
            <begin position="44"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8">
        <location>
            <begin position="305"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="8">
        <location>
            <position position="19"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="8">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="146"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="18"/>
            <end position="24"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="19"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="46"/>
            <end position="48"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="46"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="149"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="230"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="245"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="309"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="311"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="337"/>
            <end position="339"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="419"/>
            <end position="421"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO18017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="431" mass="47739" checksum="8107D1AC87D61B9E" modified="2015-11-11" version="1">MENLTTGSNTCLVGLQWGDEGKGKIVDILTESFDVVVRYQGGSNAGHTVVINNEKFVLHLIPSGILRKNKWCVIGSGVALDPGQLLEEIGELRKKNIEVSGNLRISELAHLVFPYHKKFDELSESEKGDEKIGTTRRGIGPCYTDKMARNGIRVADLYHPDHFRQRLKKVVEEKNKILVRLYDAEALSWKDIYETYCEYAEQIRPFVCNTVVFMADAVKAKKKILFEGAQGSLLDVDFGTYPFITSSSVTAGGAAVGAGISPRQIHKVLGIMKSYTTRVGSGPFPSELNDALGEYLRKKGGEYGATTGRPRRCGWFDAVAVKHAIMVNGVDSAVLTKLDVLDEQRTIKICVGYTFGDKAYDLFPPDLAARSECQPIYKEVPGWLRDTSKMRDRNDIPSQAKNYIDTLEKILGIPVEMLSVGPDRGQVVNLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ91</accession>
    <name>A0A0M2UQ91_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Sigma 54 response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_03275</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000299">
        <property type="protein sequence ID" value="KKO18052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18052">
        <property type="protein sequence ID" value="KKO18052"/>
        <property type="gene ID" value="BROFUL_03275"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025662">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025943">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00158">
        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01590">
        <property type="entry name" value="HTHFIS"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00675">
        <property type="entry name" value="SIGMA54_INTERACT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00676">
        <property type="entry name" value="SIGMA54_INTERACT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="7">
        <location>
            <begin position="4"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="6">
        <location>
            <begin position="144"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="5">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="463" mass="52295" checksum="EE3F0522AC7F9739" modified="2015-11-11" version="1">MAYRVLIADDEERMRRVLAMVFEEMKDVKVVTTSCCESTLDYLENERFHLLITDLKVQEMGRLEFLKAIKCKVPDLPIIVLTAFGSVGSVIDVMKEGVFDYLTTPFEKEILKLAVNRALKMSTLTIENKYLRQELESQYDFKNIIGNSPQVIEALRLVGEVSKTDSTVLITGESGTGKELIARAIHYNSNRGGGPLVVVNCAAIPENLLESELFGYERGAFTNAEKTKKGRFELASGGTFFMDEISEMSMSVQAKVLRVIEAKEMERLGGTETIKADSRIICATNKNLEELVRAGKFREDLYYRISVFPITLTPLRERSEDIIPLSRHFLKRFSIKMGKSPVSLSKEAEKLLVLHKWEGNIRELQNVIERAVILCKTNVITSEHLPVTIVRCAQYVNRDKAQSVDRLVSFDIPPHGLSLDALEKQLVTQALEKSKNNKTKAAKLLGLTRGTFRYRLQKYGLAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQP1</accession>
    <name>A0A0M2UQP1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02919</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18413">
        <property type="protein sequence ID" value="KKO18413"/>
        <property type="gene ID" value="BROFUL_02919"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="92" mass="10088" checksum="E0E5371A355EAB6B" modified="2015-11-11" version="1">MSAMVISSLDRFIGMAKKLESSGVTNIHLCYAKGTANLDLSVVALVPFVDYVIVGEDAHRLPYLKHIITEAHLRQIPVLPEERITAVKSNNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQP3</accession>
    <name>A0A0M2UQP3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8">Diaminopimelate epimerase</fullName>
            <shortName evidence="8">DAP epimerase</shortName>
            <ecNumber evidence="4 8">5.1.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">PLP-independent amino acid racemase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">dapF</name>
        <name evidence="10" type="ORF">BROFUL_03140</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>(2S,6S)-2,6-diaminoheptanedioate = meso-2,6-diaminoheptanedioate</text>
            <dbReference type="Rhea" id="RHEA:15393"/>
            <dbReference type="ChEBI" id="CHEBI:57609"/>
            <dbReference type="ChEBI" id="CHEBI:57791"/>
            <dbReference type="EC" id="5.1.1.7"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; DL-2,6-diaminopimelate from LL-2,6-diaminopimelate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the diaminopimelate epimerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.1.1.7" evidence="4 8"/>
    <dbReference type="EMBL" id="LAQJ01000287">
        <property type="protein sequence ID" value="KKO18187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18187">
        <property type="protein sequence ID" value="KKO18187"/>
        <property type="gene ID" value="BROFUL_03140"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3873"/>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00025"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008837">
        <property type="term" value="F:diaminopimelate epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00197">
        <property type="entry name" value="DAP_epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018510">
        <property type="entry name" value="DAP_epimerase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001653">
        <property type="entry name" value="DAP_epimerase_DapF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31689">
        <property type="entry name" value="PTHR31689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01678">
        <property type="entry name" value="DAP_epimerase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00652">
        <property type="entry name" value="DapF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01326">
        <property type="entry name" value="DAP_EPIMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6 8" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="8">
        <location>
            <begin position="72"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8">
        <location>
            <begin position="212"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8">
        <location>
            <begin position="222"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="8">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="8">
        <location>
            <position position="221"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="11"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="62"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="161"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="194"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Could be important to modulate the pK values of the two catalytic cysteine residues" evidence="8">
        <location>
            <position position="163"/>
        </location>
    </feature>
    <feature type="site" description="Could be important to modulate the pK values of the two catalytic cysteine residues" evidence="8">
        <location>
            <position position="212"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000599"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010219"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00197"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO18187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="281" mass="30715" checksum="20A0104C09787A87" modified="2015-11-11" version="1">MKFTKMHGIGNDYVYINCFEEEIGVPAKLAPIISDRHFGVGSDGLILILSSAVADCRMRIFNADGSEAQMCGNGIRCVAKYVYDNKITQKNPLTVETLAGIKTVQVFTENGRVSKARVNMGKPGLMRSEIPMIGNETKVIDESLPIDKNVSFRITCVSMGNPHCVVFVDDLDGLDISKYGPEIERHRVFPERINVHFVRIHNPKEVTMKTWERGSGITMACGTGASAVCVAGVLNKKTERNVLAHLPGGDLELEWAADGNVYMTGPATEVFTGEGTFTQKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQT2</accession>
    <name>A0A0M2UQT2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">NADH dehydrogenase I subunit E</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_03073</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
        <text evidence="6">Binds 1 [2Fe-2S] cluster.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the complex I 24 kDa subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000285">
        <property type="protein sequence ID" value="KKO18227.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18227">
        <property type="protein sequence ID" value="KKO18227"/>
        <property type="gene ID" value="BROFUL_03073"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03064">
        <property type="entry name" value="TRX_Fd_NuoE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1590">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002023">
        <property type="entry name" value="NuoE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042128">
        <property type="entry name" value="NuoE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041921">
        <property type="entry name" value="NuoE_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000216">
        <property type="entry name" value="NADH_DH_24kDa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01099">
        <property type="entry name" value="COMPLEX1_24K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="4 6" id="KW-0408">Iron</keyword>
    <keyword evidence="5 6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="6">
        <location>
            <position position="89"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="94"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="130"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000216-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18227.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="165" mass="18020" checksum="D020D2E7A9EC556B" modified="2015-11-11" version="1">MDMTQKESAQNTALDFTRVEQVLEKYKNARGALIPILQSVQGHYGYLPEPVVDRIAERLGISVHEIVGTATFYAQFHLKPRGQHIIKVCCGTACHVKGAKKVLQKISETLEVSTGMTTKDNVFTLEEVACLGACSLAPVIMVDEDIHGKLAPDTVNTVIKEIKGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQU6</accession>
    <name>A0A0M2UQU6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">UPF0056 membrane protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_03088</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the UPF0056 (MarC) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000285">
        <property type="protein sequence ID" value="KKO18242.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18242">
        <property type="protein sequence ID" value="KKO18242"/>
        <property type="gene ID" value="BROFUL_03088"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002771">
        <property type="entry name" value="Multi_antbiot-R_MarC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33508">
        <property type="entry name" value="PTHR33508"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01914">
        <property type="entry name" value="MarC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="60"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="99"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="138"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="169"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="209"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="240"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="267"/>
            <end position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU362048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18242.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="302" mass="32968" checksum="D12DAD19418C31CC" modified="2015-11-11" version="1">MTATIHFDGTLHVVIASEAKQSFTHKKQYLLKGVCEKTYKKKRFLYSTTIRRTLSVKRSLFFLGAIIIVFLSFMPPAIAETTSVGQSQPVAAGNQQAEYILNLFGIFFFLFLMLGPMKILAPFAKMTTDTDTKFRRKLALTATLVSTIACLAAAFLGQRSMKSLHISPSATLLAGGIILFLVALRMLMQMYSAPSRSETIPPPPTLAMAVSPLSLPTIVTPYGIAILIILMAAAQEKTRQLGIIGILLGIMVLNYLAMLFAHNLLKFVGVVITLQILSSVLGVLQVALGIEIIFQALIRMGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR44</accession>
    <name>A0A0M2UR44_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ATP-binding protein Wzt of ABC-transporter involved in LPS biosynthesis</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">wzt</name>
        <name evidence="6" type="ORF">BROFUL_03202</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000293">
        <property type="protein sequence ID" value="KKO18100.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18100">
        <property type="protein sequence ID" value="KKO18100"/>
        <property type="gene ID" value="BROFUL_03202"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3948"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03220">
        <property type="entry name" value="ABC_KpsT_Wzt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd10147">
        <property type="entry name" value="Wzt_C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015860">
        <property type="entry name" value="ABC_transpr_TagH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029439">
        <property type="entry name" value="Wzt_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14524">
        <property type="entry name" value="Wzt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="63"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="106"/>
            <end position="113"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18100.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="455" mass="50949" checksum="597EB4BE4E4E2D13" modified="2015-11-11" version="1">MIFVVCVNISHFTFFNKFSYLTKIVSNTVIKVENLSKKYILSHQKQERYTALRDVISDKFRGIKEKIVSPFTFHRSHFADPTHEEFWALKEVSFEINQGDRVGIIGRNGAGKTTLLKILSRITEPTTGRVTIKGRVASLLEVGTGFHPELTGRENIFLNGAVLGMSKAEIKKKFDEIVAFAEVEKFLDTPVKRYSSGMYVRLAFAVAAHLEPEILIVDEVLAVGDAQFQKKCLGKMGDVSAKEGRTVLFVSHNMLAIQNLCGTAIMLDKGQVIVNEKAGTVIEKYLFRLESSSNVALLKRKDRHGTGIIRFTSVLFKNEKGDSINALYSGQNVKLIFNFENRINGDLKNVSIAIGIDDYLAGRITVLGNAIQNETFEIVKSDETYFELNIIRLPLVPGTYSFTIYCTINGEVADWVQNAGFFSVEAGDYYDSGKLPPLEQGTFLMDYHFKISAQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR81</accession>
    <name>A0A0M2UR81_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Exodeoxyribonuclease 7 small subunit</fullName>
            <ecNumber evidence="3">3.1.11.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Exodeoxyribonuclease VII small subunit</fullName>
            <shortName evidence="3">Exonuclease VII small subunit</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">xseB</name>
        <name evidence="4" type="ORF">BROFUL_03184</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>Exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield nucleoside 5'-phosphates.</text>
            <dbReference type="EC" id="3.1.11.6"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="3">Heterooligomer composed of large and small subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the XseB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.11.6" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18135">
        <property type="protein sequence ID" value="KKO18135"/>
        <property type="gene ID" value="BROFUL_03184"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009318">
        <property type="term" value="C:exodeoxyribonuclease VII complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008855">
        <property type="term" value="F:exodeoxyribonuclease VII activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006308">
        <property type="term" value="P:DNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.1040">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00337">
        <property type="entry name" value="Exonuc_7_S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003761">
        <property type="entry name" value="Exonuc_VII_S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037004">
        <property type="entry name" value="Exonuc_VII_ssu_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34137">
        <property type="entry name" value="PTHR34137"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02609">
        <property type="entry name" value="Exonuc_VII_S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF116842">
        <property type="entry name" value="SSF116842"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01280">
        <property type="entry name" value="xseB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 3" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="82" mass="9494" checksum="781155BF7549ABAF" modified="2015-11-11" version="1">MAKIKFEDAVKGLEDIVERLEKGDLPLDETLSKYEQGIKLYKQCIALLEDAEKKIQILVKDENGVFRTRDYELEFTQGNNSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URB0</accession>
    <name>A0A0M2URB0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02715</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000251">
        <property type="protein sequence ID" value="KKO18598.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18598">
        <property type="protein sequence ID" value="KKO18598"/>
        <property type="gene ID" value="BROFUL_02715"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18598.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="59" mass="6983" checksum="83EBDE4453481B54" modified="2015-11-11" version="1" fragment="single">SSTRTNRVCPCHLIINLKFIFYEHLEYNLRTAKRKKIDREETLDLVFKDSPLNMDLGVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URD3</accession>
    <name>A0A0M2URD3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Cysteine synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_02866</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 6">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the cysteine synthase/cystathionine beta-synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000270">
        <property type="protein sequence ID" value="KKO18432.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18432">
        <property type="protein sequence ID" value="KKO18432"/>
        <property type="gene ID" value="BROFUL_02866"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3549"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004124">
        <property type="term" value="F:cysteine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006535">
        <property type="term" value="P:cysteine biosynthetic process from serine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005856">
        <property type="entry name" value="Cys_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001216">
        <property type="entry name" value="P-phosphate_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01136">
        <property type="entry name" value="cysKM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00901">
        <property type="entry name" value="CYS_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="5" id="KW-0198">Cysteine biosynthesis</keyword>
    <keyword evidence="4 6" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PALP" evidence="8">
        <location>
            <begin position="25"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="6">
        <location>
            <begin position="198"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="280"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="7">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007103"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR605856-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR605856-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18432.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="320" mass="35048" checksum="52270128EEA7631C" modified="2015-11-11" version="1">MTIRMTEKTDMRYQPKKAGVTSILDKIGNTPLLKLSRVVQGLRNNDVEIYVKAEWLNPGGSVKDRAALRIVEEGEKTGRLTRDTVIIDSTSGNTGIAYALIGAKKGYRVTLVMPLNVSEERKRIVRALGATMIFTDPLLGSDGAMSEAKRIVTADPSRYFYADQYNNDANWKAHFETTGVEVWEQTGGGVTHFVACLGTSGTLMGTGRRLKEYNPDIQVVAVEPATPMHGLEGMKHMATSVIPGIYDEHFPDRKIAIETEDAYMSVKRLAAEEGLFVGYSSGAALVASIKIANEIETGTVVTVFPDRGDRYLSTSFWAGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URD6</accession>
    <name>A0A0M2URD6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03093</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000286">
        <property type="protein sequence ID" value="KKO18195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18195">
        <property type="protein sequence ID" value="KKO18195"/>
        <property type="gene ID" value="BROFUL_03093"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="158"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18195.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="183" mass="20136" checksum="589E621BC11A75EE" modified="2015-11-11" version="1">MTHYPGAPGLAEQAMTMVANQYGKKQGEDYVFLGYKPGSASLIINMGENLYSAFPKDFYGNDTMTLPVLQGIDSLREIKFLFDLAAGTTIETWIAFGKEKYKFELGAGCTAVMGPDMYPFLQSKQLTGLLGGLKGAAEYETLVRKKGSAVNGMRPQSVVHVIIIIFVIFGNIIYFTTRRARHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URE1</accession>
    <name>A0A0M2URE1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03098</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000286">
        <property type="protein sequence ID" value="KKO18200.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18200">
        <property type="protein sequence ID" value="KKO18200"/>
        <property type="gene ID" value="BROFUL_03098"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3825"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="165"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="385"/>
            <end position="408"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18200.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="411" mass="45291" checksum="F036B92FF27B9472" modified="2015-11-11" version="1">MKNIFFIAVLIFIAPFVLTTGIFAQLPHFLIPPAEFKAFDTPNDAGETVSLTWPASPSDAPDVFYVVYIDKNKNGAFEKEAIRFKSNTCYRTGVPEIYGHKKSNENYHYVQIFPRKVFNAETIDTGQVYYFKLAMVSEDSKIVLDTVASARARGNWLHTKKANNFLIMITLSAIILYFIVHARRNPNLSLRKISGLDAVDEALGRATEMGKPVLFVHGLTGMGSISTIAAISILGRIARKIADYDANLKVVNNDPIVMSVSQEVVKESYLEAGRPDAYNPDNVFLVASEQFPYVAAVGGIMTRERPAANFFVGYFYAEALILAETGASTGAIQIAGTDAYTQLPFFITTCDYTLIGEELYAASAYLSREPMLMGTLRAQDVGKGILIIILILGTLLASFGLTFVTHLFEAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URE2</accession>
    <name>A0A0M2URE2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">FGE-sulfatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02670</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000245">
        <property type="protein sequence ID" value="KKO18633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18633">
        <property type="protein sequence ID" value="KKO18633"/>
        <property type="gene ID" value="BROFUL_02670"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3309"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016187">
        <property type="entry name" value="CTDL_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005532">
        <property type="entry name" value="SUMF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042095">
        <property type="entry name" value="SUMF_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03781">
        <property type="entry name" value="FGE-sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56436">
        <property type="entry name" value="SSF56436"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FGE-sulfatase" evidence="1">
        <location>
            <begin position="156"/>
            <end position="374"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="394" mass="44152" checksum="C486A7934CD523EF" modified="2015-11-11" version="1">MSVAISALVFTAAQWLKPPPSIIDPIPEFAFVKKTSLSGIDGPAGVSRETIAVCLRRFMEHRGISITADADGDYRRVYSQFTIWLAEVLSQKAGLNTSQFAFYTGLTGTPESDFKNVNDKLYVVKAIKIAEKNEESEVAKKTPVVSVTFNIGKLKEDMVFIQGGCFDMGDRYGDGFDDEKLVHKVCVNDFFIGKYEVTQGQWREVMGGNPSGFQMGDEYPVEEVSWNDVQEFIKRLNEKTGMNYRLPTEAEWEYAARAGSTTRYPCGDDEKCLDSIAWYSANSGNTTHPVGKKLPNAWGLYDMIGNVWEWVEDDWHDSYAGAPTNGIAWIDKERGSDRVFRGGSWDDYARYCRSSYRYNNDPSIDVNLLGFRLVLPQVISPAQPKAEAERSPGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URH2</accession>
    <name>A0A0M2URH2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Beta-1,6-galactofuranosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02614</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18663.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18663">
        <property type="protein sequence ID" value="KKO18663"/>
        <property type="gene ID" value="BROFUL_02614"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18663.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="461" mass="52951" checksum="E63B4F546C3B1424" modified="2015-11-11" version="1">MLKSLFPEKEVNQELSEIRKTAPRFFELLEEKIEGTRYLIFKKTARQLLRKMLALGIMGCLKGLSNKGIIRAINRPSGKKRILFIAGLPTFNLAGISVCLRKTGEFETVLLTENPWLVGFFQRSFDRVYVFNSYADVAQILMASRPDLIHMQGSLRYYFLGVMAKCLGRTNTVIGFNDIPSLTEVPEEDRKELWGISHDAQLDYFSEEFLFQRADGIILTMNTLAAGNALRLRYKSTSPLLEFPTYVCDEFCREEEKYSRHDGKIHLVYGGIIVPSDKPRELFGDNQFLALAKKLLHQGLCFHLYLSPHFSPFQIKKLYQDYIQFAAEARNFSFKQGLPHDEAIKEFSRYDFAAMISIFDGVKLNTFHWETAMPSKFFTYLSAGLPVIVSKEHGNISALVRKYGCGIVVDQKDLDKISDIIKRCDYEELKINVKRAREELSIKNHIGRLIEFYERVCSGNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URH4</accession>
    <name>A0A0M2URH4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="18">NAD(P)H:quinone oxidoreductase chain 5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="18" type="primary">nuoL</name>
        <name evidence="18" type="ORF">BROFUL_03081</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a plastoquinone + (n+1) H(+)(in) + NADH = a plastoquinol + n H(+)(out) + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:42608"/>
            <dbReference type="Rhea" id="RHEA-COMP:9561"/>
            <dbReference type="Rhea" id="RHEA-COMP:9562"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17757"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:62192"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>a plastoquinone + (n+1) H(+)(in) + NADPH = a plastoquinol + n H(+)(out) + NADP(+)</text>
            <dbReference type="Rhea" id="RHEA:42612"/>
            <dbReference type="Rhea" id="RHEA-COMP:9561"/>
            <dbReference type="Rhea" id="RHEA-COMP:9562"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17757"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:62192"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3 13">Membrane</location>
            <topology evidence="3 13">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the complex I subunit 5 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000285">
        <property type="protein sequence ID" value="KKO18235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18235">
        <property type="protein sequence ID" value="KKO18235"/>
        <property type="gene ID" value="BROFUL_03081"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3807"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048038">
        <property type="term" value="F:quinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042773">
        <property type="term" value="P:ATP synthesis coupled electron transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002128">
        <property type="entry name" value="NADH_UbQ_OxRdtase_chlpt_su5_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018393">
        <property type="entry name" value="NADHpl_OxRdtase_5_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001750">
        <property type="entry name" value="ND/Mrp_mem"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003945">
        <property type="entry name" value="NU5C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001516">
        <property type="entry name" value="Proton_antipo_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42829">
        <property type="entry name" value="PTHR42829"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01010">
        <property type="entry name" value="Proton_antipo_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00361">
        <property type="entry name" value="Proton_antipo_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00662">
        <property type="entry name" value="Proton_antipo_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01974">
        <property type="entry name" value="NDH_I_L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12 14" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-0520">NAD</keyword>
    <keyword evidence="7" id="KW-0521">NADP</keyword>
    <keyword evidence="8" id="KW-0618">Plastoquinone</keyword>
    <keyword evidence="6" id="KW-0874">Quinone</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-1278">Translocase</keyword>
    <keyword evidence="5 13 14" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10 14" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="29"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="51"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="83"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="124"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="163"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="187"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="221"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="253"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="292"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="325"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="419"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="528"/>
            <end position="546"/>
        </location>
    </feature>
    <feature type="domain" description="Proton_antipo_N" evidence="16">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="domain" description="Proton_antipo_M" evidence="15">
        <location>
            <begin position="46"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="domain" description="Proton_antipo_C" evidence="17">
        <location>
            <begin position="360"/>
            <end position="485"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008200"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022719"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022957"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU000320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF00361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF00662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="Pfam" id="PF01010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="KKO18235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="547" mass="59810" checksum="0485285D72D14555" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URI3</accession>
    <name>A0A0M2URI3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03055</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000284">
        <property type="protein sequence ID" value="KKO18245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18245">
        <property type="protein sequence ID" value="KKO18245"/>
        <property type="gene ID" value="BROFUL_03055"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3773"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="183"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="214"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="269" mass="30001" checksum="F3A7C1FB1E09F8BD" modified="2015-11-11" version="1">MGGLLYSIDLRLIFVCAIALFFLAFEGGFRFGRLIRTKVDETAKSWITTIDAAVLGILALLLGFTFSMALTRFDLRKQLVLEEANAIGTTYLRTQLLPEPYMTEISGLLRQYVDTRLEGIQPGKLHDAIVRSEQLHNQLWLRAVDISKDKRVSSPVIVSLFLSSLNEMIDLHAKRLAASENRVPEIAFWLLFTCAALSLLVMGYGCGMGSRRNFFPAAMMSVVLAMVILVIMDLDRPRRGFIRVSQQGMIRLQQSLTTGPAAPSEAISK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URJ6</accession>
    <name>A0A0M2URJ6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Phosphate ABC transporter permease component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_03049</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000283">
        <property type="protein sequence ID" value="KKO18260.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18260">
        <property type="protein sequence ID" value="KKO18260"/>
        <property type="gene ID" value="BROFUL_03049"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3763"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="SSF50978"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="20"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="482"/>
            <end position="500"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="512"/>
            <end position="534"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="540"/>
            <end position="565"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="577"/>
            <end position="600"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="626"/>
            <end position="644"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="683"/>
            <end position="704"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="739"/>
            <end position="761"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="474"/>
            <end position="761"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18260.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="775" mass="84634" checksum="99C46DB015CC1ABE" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URL5</accession>
    <name>A0A0M2URL5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4">Protein GrpE</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">HSP-70 cofactor</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">grpE</name>
        <name evidence="8" type="ORF">BROFUL_02587</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 4">Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3 5">Belongs to the GrpE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000239">
        <property type="protein sequence ID" value="KKO18708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18708">
        <property type="protein sequence ID" value="KKO18708"/>
        <property type="gene ID" value="BROFUL_02587"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000774">
        <property type="term" value="F:adenyl-nucleotide exchange factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051087">
        <property type="term" value="F:chaperone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042803">
        <property type="term" value="F:protein homodimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00446">
        <property type="entry name" value="GrpE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.22.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.20.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01151">
        <property type="entry name" value="GrpE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000740">
        <property type="entry name" value="GrpE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013805">
        <property type="entry name" value="GrpE_coiled_coil"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009012">
        <property type="entry name" value="GrpE_head"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21237">
        <property type="entry name" value="PTHR21237"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01025">
        <property type="entry name" value="GrpE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00773">
        <property type="entry name" value="GRPEPROTEIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51064">
        <property type="entry name" value="SSF51064"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF58014">
        <property type="entry name" value="SSF58014"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01071">
        <property type="entry name" value="GRPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 4" id="KW-0143">Chaperone</keyword>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0346">Stress response</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="183"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="32"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="189"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000639"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU004478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="203" mass="23169" checksum="CEDD6DE26DCA84D3" modified="2015-11-11" version="1">MSNGTEKDANPSEKMEVVQPSEVLFAEQQIIIQSLKQELEVNKKRISELQESMRRLAADFENYKKWAAKERQTIERTAAESLIKKLLDIYECLGKAVCTTTDTKENDLLEGVKMIYKEFSRILKSEGLEPIPSVGLHLDVYKHEVMMQKVNNDVPEDTVLEEIQRGYLLNNLVLRAAKVVVSQKSKISETTQEPEKPEEEKGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URS0</accession>
    <name>A0A0M2URS0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Phosphoribosylaminoimidazole-succinocarboxamide synthase</fullName>
            <ecNumber evidence="8">6.3.2.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">SAICAR synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">purC</name>
        <name evidence="10" type="ORF">BROFUL_02962</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate + ATP + L-aspartate = (2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinate + ADP + 2 H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:22628"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58443"/>
            <dbReference type="ChEBI" id="CHEBI:77657"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.6"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the SAICAR synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.6" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000279">
        <property type="protein sequence ID" value="KKO18340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18340">
        <property type="protein sequence ID" value="KKO18340"/>
        <property type="gene ID" value="BROFUL_02962"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3666"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00131"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004639">
        <property type="term" value="F:phosphoribosylaminoimidazolesuccinocarboxamide synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00137">
        <property type="entry name" value="SAICAR_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028923">
        <property type="entry name" value="SAICAR_synt/ADE2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001636">
        <property type="entry name" value="SAICAR_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018236">
        <property type="entry name" value="SAICAR_synthetase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01259">
        <property type="entry name" value="SAICAR_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00081">
        <property type="entry name" value="purC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01057">
        <property type="entry name" value="SAICAR_SYNTHETASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 8" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 8" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SAICAR_synt" evidence="9">
        <location>
            <begin position="20"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004672"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010190"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO18340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="301" mass="34065" checksum="F7E7C1AE6453132B" modified="2015-11-11" version="1">MKHKITPLLTTNIPDLTLCNRGKVRDIYEINNTLLIVATDRISAFDVILPSGIPYKGQVLTGLSEFWFNYTSRIIENHLITTHIEQMGNPVISRHKDILAGRAMLVKKVKVIPVECVVRGYLAGSGWKEYQKTHSICGIKLPAGLKESDPLPEPIFTPSTKATIGHDENITFSKVTDMIGKNLAEELKEKSMKLYLLARDYALDRGIIICDTKFEWGITEKNTTILIDEALTPDSSRFWPQDGYVPGKPQHSYDKQFIRDYLESVHWDKKPPAPTLPPEIIQKTSEKYLNAYKALTGQNLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URU6</accession>
    <name>A0A0M2URU6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RAMP superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02454</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18793.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18793">
        <property type="protein sequence ID" value="KKO18793"/>
        <property type="gene ID" value="BROFUL_02454"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005537">
        <property type="entry name" value="RAMP_III_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03787">
        <property type="entry name" value="RAMPs"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="250"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="256"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1573"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18793.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1573" mass="180123" checksum="84A618B26F2007DA" modified="2015-11-11" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URZ2</accession>
    <name>A0A0M2URZ2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Copper-containing nitrite reductase</fullName>
            <ecNumber evidence="5">1.7.2.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">nirK</name>
        <name evidence="9" type="ORF">BROFUL_02921</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>Fe(III)-[cytochrome c] + H2O + nitric oxide = Fe(II)-[cytochrome c] + 2 H(+) + nitrite</text>
            <dbReference type="Rhea" id="RHEA:15233"/>
            <dbReference type="Rhea" id="RHEA-COMP:10350"/>
            <dbReference type="Rhea" id="RHEA-COMP:14399"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16301"/>
            <dbReference type="ChEBI" id="CHEBI:16480"/>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
            <dbReference type="ChEBI" id="CHEBI:29034"/>
            <dbReference type="EC" id="1.7.2.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Cu(+)</name>
            <dbReference type="ChEBI" id="CHEBI:49552"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Cu(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29036"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homotrimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the multicopper oxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.7.2.1" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="SMR" id="A0A0M2URZ2"/>
    <dbReference type="EnsemblBacteria" id="KKO18415">
        <property type="protein sequence ID" value="KKO18415"/>
        <property type="gene ID" value="BROFUL_02921"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050421">
        <property type="term" value="F:nitrite reductase (NO-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045087">
        <property type="entry name" value="Cu-oxidase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011707">
        <property type="entry name" value="Cu-oxidase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001287">
        <property type="entry name" value="NO2-reductase_Cu"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11709">
        <property type="entry name" value="PTHR11709"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07732">
        <property type="entry name" value="Cu-oxidase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00695">
        <property type="entry name" value="CUNO2RDTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49503">
        <property type="entry name" value="SSF49503"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Plastocyanin-like" evidence="8">
        <location>
            <begin position="92"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001973"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011233"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00017290"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00029301"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF07732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="372" mass="40779" checksum="2B9B5E911A8C5C96" modified="2015-11-11" version="1">MTGIKVWYGLLTGALMTGVIAVAPVRSVSAVEILDTVAKNPAEIPPPITRSNPTTVTVNLVIKEVIAELAPGKQFWFWCFAEKKGDVVGPCTVPGPMIRVMEGDTVVINLTNDSNNVEPHNIDLHAVIGPGGGAAVTDVEPGETKTLQFKAMRTGAYIYHCAGEGMPWEHVAYGMYGLIMVEPKGGLKNAYKALKNSDEKEGREVKEFYVGQGEWYIKSGVEHHPDMDGYSLDEEKALSERPDYFTFNGHTKALTDPSIHGNTMMVNQGDMVRIFFVNGGPNIGSNFHIIGQIFDKFYPGHYRSVIRNEETAYIPPGSAAIFEFEALVPGQYPLVDHALFRVVKGAEGYLHVNKSKKWPHNIYSPEATGSGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URZ5</accession>
    <name>A0A0M2URZ5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Lactamase_B domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02441</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000232">
        <property type="protein sequence ID" value="KKO18848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18848">
        <property type="protein sequence ID" value="KKO18848"/>
        <property type="gene ID" value="BROFUL_02441"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="47"/>
            <end position="257"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="284" mass="32250" checksum="374D6C9411CA6390" modified="2015-11-11" version="1">MKLGTFTIYPVNDSDLYLDGGAVFGIVPRVLWEKVYPPDSKNRIRLSLHCLLIATGHHNILIDTGIGSKHDEKFCQRYGIDKGYHLLESLKHVGYRPENIDIVINTHLHFDHAGGNTTMDKKKGIVPTFPKARYLVQKGEMDAAINSNERTRASYLAEDFLPLADAGLLSVVQEEIIEVDMGVSLIKTGGHTRHHQCVKIESQGGIAFFLADLIPTTAHLQYPYISGYDLFPLETLENKKKILQQAFEEHWLLIFQHDPALCMGYLKKVDERFEIEEVKRDGFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US66</accession>
    <name>A0A0M2US66_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PIN domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02392</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000228">
        <property type="protein sequence ID" value="KKO18913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18913">
        <property type="protein sequence ID" value="KKO18913"/>
        <property type="gene ID" value="BROFUL_02392"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002716">
        <property type="entry name" value="PIN_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01850">
        <property type="entry name" value="PIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PINc" evidence="1">
        <location>
            <begin position="4"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="147" mass="17126" checksum="C82F45BA72998CF7" modified="2015-11-11" version="1">MNLFFDTSALVKYFHEEEGTTIVTKLINSKENKIWVLDLFRLEFISALYRRFRNNEIDGTILNEAIEGFGEAFTYFNIEPLGEIIIREAEYLLKGYGKYHGLRTLDALHLGCFSLISEDDWLFVSADENLCKVAKYIVFERKPPRAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US97</accession>
    <name>A0A0M2US97_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02598</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000239">
        <property type="protein sequence ID" value="KKO18717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18717">
        <property type="protein sequence ID" value="KKO18717"/>
        <property type="gene ID" value="BROFUL_02598"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="76"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="103"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="125" mass="14350" checksum="AE3F82EE8444067A" modified="2015-11-11" version="1">MLEIKLCASCKRSLSKNDVDSRRAIYQEDGSLFCKECFVTKIRKEKGYEEKDFILESLLNEVKNISRTLVYAPASWLNILAAVIQCFVFGSLVFAYLHRNGDVHAYLLLALVFQVMALTFFVIKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USB8</accession>
    <name>A0A0M2USB8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative nucleotide-binding protein, containing PIN domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03429</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000313">
        <property type="protein sequence ID" value="KKO17881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17881">
        <property type="protein sequence ID" value="KKO17881"/>
        <property type="gene ID" value="BROFUL_03429"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002716">
        <property type="entry name" value="PIN_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10130">
        <property type="entry name" value="PIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PINc" evidence="1">
        <location>
            <begin position="4"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10130"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO17881.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="140" mass="16094" checksum="7A42324210FAB379" modified="2015-11-11" version="1">MRLVIDTGILISAILKDSATREILLFADIEFLLPEYALEEYEKHRKVISKRSGLSEKELNIILSLLLDNIRIVSVSEIKPYLENAYKIIGLTDPFDVPFIALALATENNGIWSNDKHFENVKKIKIWKTSELMSYLKKRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USE4</accession>
    <name>A0A0M2USE4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8">Acetolactate synthase</fullName>
            <ecNumber evidence="4 8">2.2.1.6</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">BROFUL_03417</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>H(+) + 2 pyruvate = (2S)-2-acetolactate + CO2</text>
            <dbReference type="Rhea" id="RHEA:25249"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:58476"/>
            <dbReference type="EC" id="2.2.1.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="8">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
        <text evidence="8">Binds 1 thiamine pyrophosphate per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 8">Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 1/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 1/4.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the TPP enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.2.1.6" evidence="4 8"/>
    <dbReference type="EMBL" id="LAQJ01000312">
        <property type="protein sequence ID" value="KKO17906.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17906">
        <property type="protein sequence ID" value="KKO17906"/>
        <property type="gene ID" value="BROFUL_03417"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4198"/>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00055"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00049">
        <property type="reaction ID" value="UER00059"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003984">
        <property type="term" value="F:acetolactate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009099">
        <property type="term" value="P:valine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd02015">
        <property type="entry name" value="TPP_AHAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012846">
        <property type="entry name" value="Acetolactate_synth_lsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039368">
        <property type="entry name" value="AHAS_TPP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012000">
        <property type="entry name" value="Thiamin_PyroP_enz_cen_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012001">
        <property type="entry name" value="Thiamin_PyroP_enz_TPP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000399">
        <property type="entry name" value="TPP-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045229">
        <property type="entry name" value="TPP_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011766">
        <property type="entry name" value="TPP_enzyme-bd_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18968">
        <property type="entry name" value="PTHR18968"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02775">
        <property type="entry name" value="TPP_enzyme_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00205">
        <property type="entry name" value="TPP_enzyme_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02776">
        <property type="entry name" value="TPP_enzyme_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00118">
        <property type="entry name" value="acolac_lg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00187">
        <property type="entry name" value="TPP_ENZYMES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7 8" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0786">Thiamine pyrophosphate</keyword>
    <keyword evidence="6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TPP_enzyme_N" evidence="11">
        <location>
            <begin position="4"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="domain" description="TPP_enzyme_M" evidence="9">
        <location>
            <begin position="192"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="domain" description="TPP_enzyme_C" evidence="10">
        <location>
            <begin position="384"/>
            <end position="530"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005025"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007812"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003591"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF02776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO17906.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="558" mass="60704" checksum="DC3371B512310555" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USL6</accession>
    <name>A0A0M2USL6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyltransferase family 2</fullName>
            <ecNumber evidence="3">2.4.1.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02239</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.-" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19058.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19058">
        <property type="protein sequence ID" value="KKO19058"/>
        <property type="gene ID" value="BROFUL_02239"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="262"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="7"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19058.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="331" mass="38402" checksum="0CF0A9B905B5FEF7" modified="2015-11-11" version="1">MIALNFIIINWNTRQLLLDCISSVYTTVTGLKYQIYVVDNGSQDESIKAVHDQFPRVCVIENRENRGFAAAVNQALEKNSTADAYSVLLNTDTLLQRGAISEMYSFMEQHKDAGIAGAQLQKPDGTRQHSYDNYPTLATELFNKSLLRWLFPKKYPSKKAQATQPVEVESVIGACMMIRNKAIEDVGKLDEAYFFFLEETDWCYRMQKAGWKVYHIPDARVIHLGGQSKKRAPWQSQVEYCRSLYLFFRKNRSAFSYLMLRIFYLVKISLNLAVNAVGNVLLFFQNKKLRYRLSIYYKLFLWHLFLCPDGMGLKPPNSNNKWQEKIHHSSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USW1</accession>
    <name>A0A0M2USW1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Putative exosortase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_02176</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000214">
        <property type="protein sequence ID" value="KKO19133.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19133">
        <property type="protein sequence ID" value="KKO19133"/>
        <property type="gene ID" value="BROFUL_02176"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013426">
        <property type="entry name" value="EpsH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026392">
        <property type="entry name" value="Exo/Archaeosortase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019127">
        <property type="entry name" value="Exosortase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09721">
        <property type="entry name" value="Exosortase_EpsH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02602">
        <property type="entry name" value="8TM_EpsH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04178">
        <property type="entry name" value="exo_archaeo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0645">Protease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="5"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="28"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="65"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="88"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="113"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="180"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="209"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="246"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19133.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="271" mass="31353" checksum="E2A7FA50DF5C9396" modified="2015-11-11" version="1">MINYIIWAMIVILYTPLFFNLYRSEWKAFDYTHAYFILPVFFWLIWRKRTTLKEAIQKSRLDHNLMGFFGFLVGILLFIFGWRQQYSFITTLSLLPVLLGLTTYLYGFQATRIVLFPLLYLLLLVPIPIGIVDDLTLPMRYGLSVMTEIILGFFHFPISREGLLLTIGESELFMGQPCSGFRSIITMFSLSLVYVYLSRSSLFRKTILVSSIVPFAVLGNLIRIIALCLITYYFGEETGQGFFHSFSGIVIFVFIVSGLIGLEFMLERCAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT08</accession>
    <name>A0A0M2UT08_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribosomal protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02097</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000210">
        <property type="protein sequence ID" value="KKO19188.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19188">
        <property type="protein sequence ID" value="KKO19188"/>
        <property type="gene ID" value="BROFUL_02097"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2617"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd16377">
        <property type="entry name" value="23S_rRNA_IVP_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1440.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012657">
        <property type="entry name" value="23S_rRNA-intervening_sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036583">
        <property type="entry name" value="23S_rRNA_IVS_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38471">
        <property type="entry name" value="PTHR38471"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05635">
        <property type="entry name" value="23S_rRNA_IVP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158446">
        <property type="entry name" value="SSF158446"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02436">
        <property type="entry name" value="TIGR02436"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2" id="KW-0689">Ribosomal protein</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="145"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19188.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="165" mass="18195" checksum="A4FEE944F1176312" modified="2015-11-11" version="1">MKKGSGCSWQGTGKKGTEDSFQGAEKRQDANSYLTFEDLEVWKRASRLSANIYKELASLKDFGFKDQITRSGLSIPSNIAEGIERESNKECINFLQYAKGSCGELRTQIYIGLDIGYISDEIGKQWIKETRELSAMLVGLMRSKRNNGSKKAGKKGAGGSFQGTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTK8</accession>
    <name>A0A0M2UTK8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NmrA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02983</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000281">
        <property type="protein sequence ID" value="KKO18326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18326">
        <property type="protein sequence ID" value="KKO18326"/>
        <property type="gene ID" value="BROFUL_02983"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008030">
        <property type="entry name" value="NmrA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05368">
        <property type="entry name" value="NmrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NmrA" evidence="1">
        <location>
            <begin position="19"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="116" mass="13416" checksum="804D5B53AF9AA78A" modified="2015-11-11" version="1">MKDNKEETGGNIMVNKRDLVAKQVFSDHTSENKLLQGVLRIAHLRTVKQRGLTRETRHGKILATAAKAARIKHFIRRSFHDTHRNNGTQRDKDALDMRQYMRSWLACNHLPAGFLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTM1</accession>
    <name>A0A0M2UTM1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Chaperone protein ClpB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">clpB</name>
        <name evidence="12" type="ORF">BROFUL_02353</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homohexamer. The oligomerization is ATP-dependent.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Homohexamer; The oligomerization is ATP-dependent.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 9">Belongs to the ClpA/ClpB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18960">
        <property type="protein sequence ID" value="KKO18960"/>
        <property type="gene ID" value="BROFUL_02353"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2921"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042026">
        <property type="term" value="P:protein refolding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009408">
        <property type="term" value="P:response to heat"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1780.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017730">
        <property type="entry name" value="Chaperonin_ClpB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019489">
        <property type="entry name" value="Clp_ATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036628">
        <property type="entry name" value="Clp_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004176">
        <property type="entry name" value="Clp_R_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001270">
        <property type="entry name" value="ClpA/B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018368">
        <property type="entry name" value="ClpA/B_CS1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028299">
        <property type="entry name" value="ClpA/B_CS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041546">
        <property type="entry name" value="ClpA/ClpB_AAA_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07724">
        <property type="entry name" value="AAA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17871">
        <property type="entry name" value="AAA_lid_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02861">
        <property type="entry name" value="Clp_N"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10431">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00300">
        <property type="entry name" value="CLPPROTEASEA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM01086">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81923">
        <property type="entry name" value="SSF81923"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03346">
        <property type="entry name" value="chaperone_ClpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51903">
        <property type="entry name" value="CLP_R"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00870">
        <property type="entry name" value="CLPAB_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00871">
        <property type="entry name" value="CLPAB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 9" id="KW-0143">Chaperone</keyword>
    <keyword evidence="5 10" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 8" id="KW-0677">Repeat</keyword>
    <keyword evidence="10" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="Clp R" evidence="11">
        <location>
            <begin position="3"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="10">
        <location>
            <begin position="408"/>
            <end position="536"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008675"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00026057"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU004432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU362034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO18960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="869" mass="97823" checksum="C6985B895FD70CC8" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTT2</accession>
    <name>A0A0M2UTT2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Na+-translocating NADH-quinone reductase subunit E</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_02902</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18396.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18396">
        <property type="protein sequence ID" value="KKO18396"/>
        <property type="gene ID" value="BROFUL_02902"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003667">
        <property type="entry name" value="NqrDE/RnfAE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02508">
        <property type="entry name" value="Rnf-Nqr"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="45"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="77"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="108"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="138"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="176"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="239"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="269"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="307"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="350"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="383"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="409"/>
            <end position="432"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="452"/>
            <end position="470"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18396.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="471" mass="51309" checksum="ED9AA454CA66DD8E" modified="2015-11-11" version="1">MVGLRRSVRKVSKYFMRDNLILTAGAGLGFCSSLAVTNKLENSLTMGIGVTLVTAGSFCVVYPFKRLISTAGTHHKISLLMIIVSVFVAIFGFFAQAFVPAITANIKAYIDLITTNCIVLAVISEGLTVGFWDAQKKILKACFGYSAALILLAFLREPLGFGTVMGFSVLPDTFPKVVLMVTPVGGFFALAAFRLLLRPFLLKTGIVCQESSACGCASAAHGGVPLVVSHPKRGISRTTLIAIGLGAALFVSLIVHIQTIPTLHQHFLILFPVLLNALFFDGIVLSKLLGLCPLINKSRQIDAAWKMGVAVIIVTTLSTALNWVVYQHILVRCSDFLSQYSPIPLRLENIFYLTVFIVTIAVFVQILSVLLRKFAKAVYEQMGQFLELITVNCIVLASATFTIPTGAKFLVTTVTAFGYGLHWMMVVVWLAILRRQRLFVPTTAWDEDTIAILLLGIMAAIFTGIGMIQLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTU8</accession>
    <name>A0A0M2UTU8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Arginine biosynthesis bifunctional protein ArgJ</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="7">Glutamate N-acetyltransferase</fullName>
                <ecNumber evidence="7">2.3.1.35</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="7">Ornithine acetyltransferase</fullName>
                <shortName evidence="7">OATase</shortName>
            </alternativeName>
            <alternativeName>
                <fullName evidence="7">Ornithine transacetylase</fullName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="7">Amino-acid acetyltransferase</fullName>
                <ecNumber evidence="7">2.3.1.1</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="7">N-acetylglutamate synthase</fullName>
                <shortName evidence="7">AGSase</shortName>
            </alternativeName>
        </domain>
        <component>
            <recommendedName>
                <fullName evidence="7">Arginine biosynthesis bifunctional protein ArgJ alpha chain</fullName>
            </recommendedName>
        </component>
        <component>
            <recommendedName>
                <fullName evidence="7">Arginine biosynthesis bifunctional protein ArgJ beta chain</fullName>
            </recommendedName>
        </component>
    </protein>
    <gene>
        <name evidence="7" type="primary">argJ</name>
        <name evidence="8" type="ORF">BROFUL_01800</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>L-glutamate + N(2)-acetyl-L-ornithine = L-ornithine + N-acetyl-L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:15349"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:44337"/>
            <dbReference type="ChEBI" id="CHEBI:46911"/>
            <dbReference type="ChEBI" id="CHEBI:57805"/>
            <dbReference type="EC" id="2.3.1.35"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>acetyl-CoA + L-glutamate = CoA + H(+) + N-acetyl-L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:24292"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:44337"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="EC" id="2.3.1.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Amino-acid biosynthesis; L-arginine biosynthesis; L-ornithine and N-acetyl-L-glutamate from L-glutamate and N(2)-acetyl-L-ornithine (cyclic): step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7">Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 1/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 7">Heterotetramer of two alpha and two beta chains.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="7">Some bacteria possess a monofunctional ArgJ, i.e., capable of catalyzing only the fifth step of the arginine biosynthetic pathway.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the ArgJ family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.35" evidence="7"/>
    <dbReference type="EC" id="2.3.1.1" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000188">
        <property type="protein sequence ID" value="KKO19488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19488">
        <property type="protein sequence ID" value="KKO19488"/>
        <property type="gene ID" value="BROFUL_01800"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2238"/>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00106"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004042">
        <property type="term" value="F:acetyl-CoA:L-glutamate N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004358">
        <property type="term" value="F:glutamate N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0103045">
        <property type="term" value="F:methione N-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02152">
        <property type="entry name" value="OAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01106">
        <property type="entry name" value="ArgJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002813">
        <property type="entry name" value="Arg_biosynth_ArgJ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016117">
        <property type="entry name" value="ArgJ-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042195">
        <property type="entry name" value="ArgJ_beta_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23100">
        <property type="entry name" value="PTHR23100"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01960">
        <property type="entry name" value="ArgJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56266">
        <property type="entry name" value="SSF56266"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00120">
        <property type="entry name" value="ArgJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="5 7" id="KW-0068">Autocatalytic cleavage</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_5023355064" description="Arginine biosynthesis bifunctional protein ArgJ alpha chain" evidence="7">
        <location>
            <begin position="1"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5023355063" description="Arginine biosynthesis bifunctional protein ArgJ beta chain" evidence="7">
        <location>
            <begin position="190"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="7">
        <location>
            <position position="190"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="153"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="179"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="190"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="275"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="397"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="402"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Involved in the stabilization of negative charge on the oxyanion by the formation of the oxyanion hole" evidence="7">
        <location>
            <position position="114"/>
        </location>
    </feature>
    <feature type="site" description="Involved in the stabilization of negative charge on the oxyanion by the formation of the oxyanion hole" evidence="7">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <feature type="site" description="Cleavage; by autolysis" evidence="7">
        <location>
            <begin position="189"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000498"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006774"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19488.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="402" mass="42574" checksum="24173AEB538C9277" modified="2015-11-11" version="1">MTTGCIVAPLGFQAGSTYCGIKIAKDSLDLGIIFSAYPSTGAALFTTNQIYAAPVKLSRKIIQKGMGCVRAFVINSGNANACTGEQGYKDAAEMVSTAAACLKISEDELLIASTGIIGRPLPMEKITAGIQTAVNSLGNTQAHGDAMARAIMTTDTKQKSVAIRIKINGKEVSVGGIAKGAGMIAPNLATMLCFLTTDVSMPAELLSECLRNSAESSFNRITIDGHMSTNDTIAIIANGASGVTIAEKNNDLRTFQQGLDYVTSTLAKAIVMDGEGATKFVQIDVIGARSRNEATRIARSIADSPLVKTALNGEDPNWGRIVSAAGYAGVELDESKTTLYINDILIFAKGMPAQCDLNTLSASMKNKDIMIRLELGLGNYRDTVWTCDLSHEYVTINAEYHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTZ9</accession>
    <name>A0A0M2UTZ9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03362</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000308">
        <property type="protein sequence ID" value="KKO17954.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17954">
        <property type="protein sequence ID" value="KKO17954"/>
        <property type="gene ID" value="BROFUL_03362"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020472">
        <property type="entry name" value="G-protein_beta_WD-40_rep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019775">
        <property type="entry name" value="WD40_repeat_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00320">
        <property type="entry name" value="GPROTEINBRPT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="SSF50978"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00678">
        <property type="entry name" value="WD_REPEATS_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="5"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1 3" id="KW-0853">WD repeat</keyword>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="61"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="103"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="145"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="187"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="229"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO17954.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="258" mass="27766" checksum="B12892A2273CF67D" modified="2015-11-11" version="1" fragment="single">MSLWDVPIERFNVKEVHEPKGQEDAILSLAYSPDGKSLATGSKQGIVCVRNISDGEEEVLWSGHGVSVESVAFSLDGKYLAFGGNDKIVRLWDLSKKKLVYEMEGHTDAVVSVAFSPDGKYLASGSDDESVRLWDVAKGKKLLKFAGHTSDVRSVAFSPDGKYLASGSYDTGVQLWDAATGVLVRELPGHTYGVTSVAFSLDGRYLASGSWNNGVRLWDAATGVLVRELPGHTDRVTSVAFSPDEKHLAAGSADNSVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU04</accession>
    <name>A0A0M2UU04_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01744</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S49 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000181">
        <property type="protein sequence ID" value="KKO19543.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19543">
        <property type="protein sequence ID" value="KKO19543"/>
        <property type="gene ID" value="BROFUL_01744"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07023">
        <property type="entry name" value="S49_Sppa_N_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004635">
        <property type="entry name" value="Pept_S49_SppA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002142">
        <property type="entry name" value="Peptidase_S49"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01343">
        <property type="entry name" value="Peptidase_S49"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00706">
        <property type="entry name" value="SppA_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_S49" evidence="2">
        <location>
            <begin position="1"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01343"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19543.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="198" mass="21703" checksum="4C2DC49F9D4FD133" modified="2015-11-11" version="1">MQDVAASGGYYISAAADAIVAHPTTITGSIGVIMPLINVAELINRYGIKDNSIASGNLKEIGSPLKQMTADEADVLKGIIDELYLQFVNVVSTGRNMDLEAVKKIADGRIYTGKQALEKGLVDQLGYLEDAITLTKQLAGLTEATIIRYEKHYGMADLLGLTSNKLFQQNTIRLDISQLQDQSDTRPMYLWNGYSKRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUD8</accession>
    <name>A0A0M2UUD8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_02064</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0410 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000208">
        <property type="protein sequence ID" value="KKO19220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19220">
        <property type="protein sequence ID" value="KKO19220"/>
        <property type="gene ID" value="BROFUL_02064"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007341">
        <property type="entry name" value="Transgly_assoc"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04226">
        <property type="entry name" value="Transgly_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="34"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="57"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="81" mass="8587" checksum="0E759A1268052985" modified="2015-11-11" version="1">MMNFVIWIISGIIAGWLTGLVVRGRGFGIKGDLIVGLLGGLVAGALLSFIGRFTFQLLGNVAVAVVGGVILVAIIRFFRRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUJ3</accession>
    <name>A0A0M2UUJ3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative phosphoesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03193</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the metallophosphoesterase superfamily. YfcE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18144.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18144">
        <property type="protein sequence ID" value="KKO18144"/>
        <property type="gene ID" value="BROFUL_03193"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024654">
        <property type="entry name" value="Calcineurin-like_PHP_lpxH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011152">
        <property type="entry name" value="Pesterase_MJ0912"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12850">
        <property type="entry name" value="Metallophos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000883">
        <property type="entry name" value="Pesterase_MJ0912"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metallophos_2" evidence="2">
        <location>
            <begin position="85"/>
            <end position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008950"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18144.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="307" mass="34247" checksum="AD5295530F3EBB6D" modified="2015-11-11" version="1">MKNIIISDIHSNVDALLAVVKEIAGKEFPISRILIAGDIVGYGASPNECCDVVRFLLYGRKAVEVTKINEIAAQPYLDSHQQHDLYHALLALEKKGLAIGGNHDREAAGEPSLTSEMNPVALAAINWTKGVLTKENLKFLRGLSLRMKFGKEGFEIVHSTPSYPRGYEYVRNAGVLKYTTLWSPVTFGGHTHRPSAYIYTRETRTVNASVLVPADNYDMRLMLIEKESTNKVESFAIDSSKDWKYYVNVGSVGQPRDGNPHACYVIFDSTEKHLEFKRVSYNAEAASKRITEAKLPKELSERVLKGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUK4</accession>
    <name>A0A0M2UUK4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Low molecular weight phosphotyrosine protein phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03153</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000289">
        <property type="protein sequence ID" value="KKO18159.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18159">
        <property type="protein sequence ID" value="KKO18159"/>
        <property type="gene ID" value="BROFUL_03153"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023485">
        <property type="entry name" value="Ptyr_pPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036196">
        <property type="entry name" value="Ptyr_pPase_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00226">
        <property type="entry name" value="LMWPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52788">
        <property type="entry name" value="SSF52788"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LMWPc" evidence="1">
        <location>
            <begin position="6"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18159.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="153" mass="17030" checksum="C3D86E70DFBC1D39" modified="2015-11-11" version="1">MPDEPMKILFVCHANVGRSQAAQACFNKLSRHTADSAGIAVDELIVKLHLRGRKLKDVASISRAAEYNLECIKNELGMDIADKERQQLTPAMVDAADMVVVIAGKEQWPAYLKEGGKVVFWDIPDGVGQDDAFVYDVFTQVRRRVEQLVEEIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUK6</accession>
    <name>A0A0M2UUK6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_01571</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000164">
        <property type="protein sequence ID" value="KKO19723.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19723">
        <property type="protein sequence ID" value="KKO19723"/>
        <property type="gene ID" value="BROFUL_01571"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13426">
        <property type="entry name" value="PAS_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5 11" id="KW-0418">Kinase</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="32"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="346"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="10">
        <location>
            <begin position="366"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="9">
        <location>
            <begin position="434"/>
            <end position="496"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="8">
        <location>
            <begin position="571"/>
            <end position="781"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="403"/>
            <end position="437"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO19723.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="786" mass="88023" checksum="BCD9366D8CE0A426" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUX8</accession>
    <name>A0A0M2UUX8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CHAT domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02457</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18796">
        <property type="protein sequence ID" value="KKO18796"/>
        <property type="gene ID" value="BROFUL_02457"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024983">
        <property type="entry name" value="CHAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12770">
        <property type="entry name" value="CHAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CHAT" evidence="1">
        <location>
            <begin position="520"/>
            <end position="758"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18796.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="773" mass="89017" checksum="77F9A324D56AE0BD" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV04</accession>
    <name>A0A0M2UV04_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Excinuclease ABC subunit A</fullName>
            <ecNumber evidence="1">3.1.25.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">uvrA</name>
        <name evidence="1" type="ORF">BROFUL_01662</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.25.-" evidence="1"/>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19627">
        <property type="protein sequence ID" value="KKO19627"/>
        <property type="gene ID" value="BROFUL_01662"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2052"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="142" mass="15889" checksum="2C6735454078DF1D" modified="2015-11-11" version="1">MTTEHNNYDNDIVVRGAREHNLKGINVDIPRDQITVITGISGSGKSSLAFDTIYAEGQRRYIESLSTYARQFLDQIQKPDVELIEGLPPTIAIEQRTCLPVLALRWRPLRKSMTIYGYYTQGSAPPIVISVSALSPARLSIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV38</accession>
    <name>A0A0M2UV38_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Enolase</fullName>
            <ecNumber evidence="8">4.2.1.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">2-phospho-D-glycerate hydro-lyase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">2-phosphoglycerate dehydratase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">eno</name>
        <name evidence="13" type="ORF">BROFUL_02958</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>(2R)-2-phosphoglycerate = H2O + phosphoenolpyruvate</text>
            <dbReference type="Rhea" id="RHEA:10164"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:58289"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="EC" id="4.2.1.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="activity regulation">
        <text evidence="8">The covalent binding to the substrate causes inactivation of the enzyme, and possibly serves as a signal for the export of the protein.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 4/5.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="8">Secreted</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="8">Cell surface</location>
        </subcellularLocation>
        <text evidence="8">Fractions of enolase are present in both the cytoplasm and on the cell surface. The export of enolase possibly depends on the covalent binding to the substrate; once secreted, it remains attached to the cell surface.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the enolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.11" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000278">
        <property type="protein sequence ID" value="KKO18359.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18359">
        <property type="protein sequence ID" value="KKO18359"/>
        <property type="gene ID" value="BROFUL_02958"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3663"/>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00187"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009986">
        <property type="term" value="C:cell surface"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000015">
        <property type="term" value="C:phosphopyruvate hydratase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004634">
        <property type="term" value="F:phosphopyruvate hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03313">
        <property type="entry name" value="enolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00318">
        <property type="entry name" value="Enolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000941">
        <property type="entry name" value="Enolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036849">
        <property type="entry name" value="Enolase-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029017">
        <property type="entry name" value="Enolase-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020810">
        <property type="entry name" value="Enolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020809">
        <property type="entry name" value="Enolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020811">
        <property type="entry name" value="Enolase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11902">
        <property type="entry name" value="PTHR11902"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00113">
        <property type="entry name" value="Enolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03952">
        <property type="entry name" value="Enolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001400">
        <property type="entry name" value="Enolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00148">
        <property type="entry name" value="ENOLASE"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00002">
        <property type="entry name" value="enolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01192">
        <property type="entry name" value="Enolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01193">
        <property type="entry name" value="Enolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51604">
        <property type="entry name" value="SSF51604"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54826">
        <property type="entry name" value="SSF54826"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01060">
        <property type="entry name" value="eno"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00164">
        <property type="entry name" value="ENOLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="7 8" id="KW-0456">Lyase</keyword>
    <keyword evidence="5 8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0964">Secreted</keyword>
    <feature type="domain" description="Enolase_N" evidence="12">
        <location>
            <begin position="4"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="domain" description="Enolase_C" evidence="11">
        <location>
            <begin position="140"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8 10">
        <location>
            <begin position="366"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="8 9">
        <location>
            <position position="206"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="8 9">
        <location>
            <position position="339"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="156"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="165"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="243"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="287"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="314"/>
        </location>
    </feature>
    <feature type="binding site" description="covalent; in inhibited form" evidence="8">
        <location>
            <position position="339"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="390"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009604"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00318"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR001400-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR001400-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM01192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM01193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO18359.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="428" mass="46546" checksum="106E07489B662EC6" modified="2015-11-11" version="1">MTTISCVKAREILDSRGNPTVEVDVILTNGTMGRAAVPSGASTGKREALELRDSDKPFRYFGKGVQTAVKNVNELITHKLEGMDAVRQVEIDNLLLALDGTKNKEKLGANAMLGVSLAVAKAAANSLCLPLYRYLGGTNAKVLPVPMMNILNGGKHADNNLDIQEFMIMPVGTDRFAEALRMGAEVFHNLRTVLKSRGYNTNVGDEGGFAPNLTTTEDAFELILEAIQKAGYTAGKDIYLALDAAASEFYKDGKYALRVEGGAKKSSEEMIDLYTRFTNKYPVCSIEDGLAEEDWDGWKKLTKNLGDKIQLVGDDIFVTNTEILTKGIEQGVANSILIKVNQIGTLTETLNAIELARMNGYSTVISHRSGETEDTTIADIAVATNAGQIKTGSLCRTDRIGKYNQLLRIEEDLSRNAIYGGKPCRMSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV53</accession>
    <name>A0A0M2UV53_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02885</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18379.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18379">
        <property type="protein sequence ID" value="KKO18379"/>
        <property type="gene ID" value="BROFUL_02885"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="221"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18379.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="266" mass="30784" checksum="E83AA43557C1669A" modified="2015-11-11" version="1">MSTAMLEKFLLDYVEAREGEAELVDEGTYTILYGAEPAMKTVTFEIEAAKENHEIELFLPGSIFFDTVIRDATAKGCICATWLSGFQAVTKIIQAEAMRSFSFAEHGRDGIKKIETKMSLFQPYNFTVWTFTFKVRVTTDVIEDHLYTVSIDARTAKVLKNFLEYLEKFQHLPQNEEGIPDYHHPEVQRYYQAAIEYIKQKVTGLIVRKKQEALDLKHKDAERMKKYYDTLNEEMEEAMEKKTSDREAMAEIQAKQKAMLVQRQSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVA6</accession>
    <name>A0A0M2UVA6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Response regulator sirA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">sirA</name>
        <name evidence="3" type="ORF">BROFUL_02868</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sulfur carrier protein TusA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000270">
        <property type="protein sequence ID" value="KKO18434.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18434">
        <property type="protein sequence ID" value="KKO18434"/>
        <property type="gene ID" value="BROFUL_02868"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3551"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.110.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001455">
        <property type="entry name" value="TusA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036868">
        <property type="entry name" value="TusA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01206">
        <property type="entry name" value="TusA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64307">
        <property type="entry name" value="SSF64307"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UPF0033" evidence="2">
        <location>
            <begin position="12"/>
            <end position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18434.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="81" mass="9195" checksum="E7FA7883A31F57DA" modified="2015-11-11" version="1">MTEEEKMAPDDKIDLRGVLCPINFVKTKLKLEMMDSGQVLEVILDDGEPIRSVPRSIKEEGHKIVKVENLEGGYRLLIKKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVE9</accession>
    <name>A0A0M2UVE9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Astacin (Peptidase family M12A)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01726</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000180">
        <property type="protein sequence ID" value="KKO19555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19555">
        <property type="protein sequence ID" value="KKO19555"/>
        <property type="gene ID" value="BROFUL_01726"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2139"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024079">
        <property type="entry name" value="MetalloPept_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001506">
        <property type="entry name" value="Peptidase_M12A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006026">
        <property type="entry name" value="Peptidase_Metallo"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01400">
        <property type="entry name" value="Astacin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00235">
        <property type="entry name" value="ZnMc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ZnMc" evidence="1">
        <location>
            <begin position="35"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="256" mass="29040" checksum="093A349CEF8BAFB3" modified="2015-11-11" version="1">MSNYLKVCYDRILPRDIRRLAQPSMSIAARMAVLKAKKWPNGSTLRVRFIGGDSGKHNIVKQFAPKWSNHANLKFDFNNAADAEIRISFVDSDGAWSYIGTDCKDIPLGQATMNLGWQDEGVVLHEFGHAIGLIHEHQNPLGGIKWNKPNVIRDLSGPPNNWDPETIDHNMFKTYDREQINGTSLDKKSVMLYAIPVTWTLDGFQSEPNEVLSETDKKFIGDPINYPFQGAGAMELPVIEQKPRSRNWPIWRARPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVP3</accession>
    <name>A0A0M2UVP3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01670</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19635">
        <property type="protein sequence ID" value="KKO19635"/>
        <property type="gene ID" value="BROFUL_01670"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="380" mass="41891" checksum="F4F6F0A1A68A65C3" modified="2015-11-11" version="1">MKIRWIPYIVIAISLSVSGVVHGENERCQPEVVVFFGNGVWNDVEDADESRELLVNRLNAHVSGTSLEGTITYGLAYNPSEGYLADLIETFEQALQTNYSQFWNYLADWDTMPDFLQNRIIAIAKEVDAAVVSANPSVQEHIALYNQHLQDGKMVVLVAHSQGNLYGNIAYRGINQQYIDGFGIVSVANPDSSVAAGGPYTTIDEDLIIGSIPSALSPNLDNFFGPLNWGDIWGGHNFIKSYMAPGHKAEAKILNDVVTTINKLVRTDAVEIVHTYNILGVICGNPGTTFITIPQDAYVTEILTYHWCDRGQPAGTHVLYNHNSLQRYGPFSGTTVIRSWVSYPNTIIPAGSYEVIDSEPETWSHTNSGGFVIIRGIPCY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVQ0</accession>
    <name>A0A0M2UVQ0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Methylated-DNA-protein-cysteine S-methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_01367</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 4-O-methyl-thymidine in DNA + L-cysteinyl-[protein] = a thymidine in DNA + S-methyl-L-cysteinyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:53428"/>
            <dbReference type="Rhea" id="RHEA-COMP:10131"/>
            <dbReference type="Rhea" id="RHEA-COMP:10132"/>
            <dbReference type="Rhea" id="RHEA-COMP:13555"/>
            <dbReference type="Rhea" id="RHEA-COMP:13556"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:82612"/>
            <dbReference type="ChEBI" id="CHEBI:137386"/>
            <dbReference type="ChEBI" id="CHEBI:137387"/>
            <dbReference type="EC" id="2.1.1.63"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>a 6-O-methyl-2'-deoxyguanosine in DNA + L-cysteinyl-[protein] = a 2'-deoxyguanosine in DNA + S-methyl-L-cysteinyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:24000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10131"/>
            <dbReference type="Rhea" id="RHEA-COMP:10132"/>
            <dbReference type="Rhea" id="RHEA-COMP:11367"/>
            <dbReference type="Rhea" id="RHEA-COMP:11368"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:82612"/>
            <dbReference type="ChEBI" id="CHEBI:85445"/>
            <dbReference type="ChEBI" id="CHEBI:85448"/>
            <dbReference type="EC" id="2.1.1.63"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000141">
        <property type="protein sequence ID" value="KKO19917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19917">
        <property type="protein sequence ID" value="KKO19917"/>
        <property type="gene ID" value="BROFUL_01367"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1688"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003908">
        <property type="term" value="F:methylated-DNA-[protein]-cysteine S-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06445">
        <property type="entry name" value="ATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001497">
        <property type="entry name" value="MethylDNA_cys_MeTrfase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014048">
        <property type="entry name" value="MethylDNA_cys_MeTrfase_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036217">
        <property type="entry name" value="MethylDNA_cys_MeTrfase_DNAb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036631">
        <property type="entry name" value="MGMT_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01035">
        <property type="entry name" value="DNA_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46767">
        <property type="entry name" value="SSF46767"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53155">
        <property type="entry name" value="SSF53155"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00589">
        <property type="entry name" value="ogt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00374">
        <property type="entry name" value="MGMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5" id="KW-0234">DNA repair</keyword>
    <keyword evidence="3 7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DNA_binding_1" evidence="6">
        <location>
            <begin position="80"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001286"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001596"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="186" mass="20809" checksum="023F34E86035C799" modified="2015-11-11" version="1">MYVAKSAKGICRISFPHDSEEDFLRPFIRDITSRVEKTNGSIKIQRNDLFLKPETDVLKKYFQGKTVSFDFPLDLDQGTPFQQKVWEKLREIPYGECRSYKWVAKEIGQPLATRAVGMANNKNPVPPVIPCHRIIGSDGSLVGYAFGISVKKQLLEMERHTVHNCNILTGSSTLSPPHGASDESGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVU5</accession>
    <name>A0A0M2UVU5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01315</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000138">
        <property type="protein sequence ID" value="KKO19967.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19967">
        <property type="protein sequence ID" value="KKO19967"/>
        <property type="gene ID" value="BROFUL_01315"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1627"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19967.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="90" mass="10639" checksum="E46F2576FBE7ECF9" modified="2015-11-11" version="1">MSHLMHWQNIKYLTKRDEVKFVLHSRSDYEWAKDVIGKYRLSEIAQVLMGTVFDALLPSTVAQWILDDNLPVRFQLQLHKCIWDPQARGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVV9</accession>
    <name>A0A0M2UVV9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Nucleoid-associated protein BROFUL_01048</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01048</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Nucleoid</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the YbaB/EbfC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20198">
        <property type="protein sequence ID" value="KKO20198"/>
        <property type="gene ID" value="BROFUL_01048"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1310"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043590">
        <property type="term" value="C:bacterial nucleoid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1310.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00274">
        <property type="entry name" value="DNA_YbaB_EbfC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036894">
        <property type="entry name" value="YbaB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004401">
        <property type="entry name" value="YbaB/EbfC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33449">
        <property type="entry name" value="PTHR33449"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02575">
        <property type="entry name" value="YbaB_DNA_bd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004555">
        <property type="entry name" value="UCP004555"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82607">
        <property type="entry name" value="SSF82607"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00103">
        <property type="entry name" value="DNA_YbaB_EbfC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="4"/>
            <end position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="116" mass="12679" checksum="CBF8A6E8406D0A43" modified="2015-11-11" version="1">MKGFGNIAEMMKQAQKQAQKMQKQMEEVQNDLKERVVEASSGGGMVTVHMNGKQEILSIKIDPEVVDPQDVQMLEDLILSAVSQALKKSQELYQSEMGKLTGGLNIPGMQGLLGGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVW7</accession>
    <name>A0A0M2UVW7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Peptide methionine sulfoxide reductase MsrB</fullName>
            <ecNumber evidence="3">1.8.4.12</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Peptide-methionine (R)-S-oxide reductase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">msrB</name>
        <name evidence="6" type="ORF">BROFUL_01261</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 3">
            <text>[thioredoxin]-disulfide + H2O + L-methionyl-[protein] = [thioredoxin]-dithiol + L-methionyl-(R)-S-oxide-[protein]</text>
            <dbReference type="Rhea" id="RHEA:24164"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="Rhea" id="RHEA-COMP:12313"/>
            <dbReference type="Rhea" id="RHEA-COMP:12314"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16044"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:45764"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="EC" id="1.8.4.12"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="3">Binds 1 zinc ion per subunit. The zinc ion is important for the structural integrity of the protein.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the MsrB Met sulfoxide reductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.8.4.12" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO19992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19992">
        <property type="protein sequence ID" value="KKO19992"/>
        <property type="gene ID" value="BROFUL_01261"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1558"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033743">
        <property type="term" value="F:peptide-methionine (R)-S-oxide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030091">
        <property type="term" value="P:protein repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01400">
        <property type="entry name" value="MsrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028427">
        <property type="entry name" value="Met_Sox_Rdtase_MsrB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002579">
        <property type="entry name" value="Met_Sox_Rdtase_MsrB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011057">
        <property type="entry name" value="Mss4-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10173">
        <property type="entry name" value="PTHR10173"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01641">
        <property type="entry name" value="SelR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51316">
        <property type="entry name" value="SSF51316"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00357">
        <property type="entry name" value="TIGR00357"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51790">
        <property type="entry name" value="MSRB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="16"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="domain" description="MsrB" evidence="5">
        <location>
            <begin position="70"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="3">
        <location>
            <position position="181"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="109"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="112"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="158"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="161"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01400"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51790"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="195" mass="21878" checksum="391F1AE40360667A" modified="2015-11-11" version="1">MNNALFAGYTVDQRQIIVLLCFVIVLFSGSMLAYNRVKTTGKRTVTIVENDSSDLKIKDIIIHGKVMKSDDEWKRILSSEQYKIIRQKGTELPFTGKYHNFKGEGVFRCVGCGNDLFRSEAKFDSGTGWPSFREPVPEKHVATATDVSHGMVRTEVVCSRCDAHLGHVFQDGPPPTGLRYCINSAALNFVKKQEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVY5</accession>
    <name>A0A0M2UVY5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative phytoene dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02169</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000214">
        <property type="protein sequence ID" value="KKO19126.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19126">
        <property type="protein sequence ID" value="KKO19126"/>
        <property type="gene ID" value="BROFUL_02169"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19126.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="486" mass="54624" checksum="822C47F14EE386EE" modified="2015-11-11" version="1">MTPSSRCIQSTKKDALYPHYDAIVIGAGVAGLVCGTVLAKAGKKVLIIEHHSIPGGYCTSFKRKGFNFDAAVHHIGGCGKWGIVGRCLKTLGIEMDFHLLDPMDHLIFPNFTIEIPADLDEYIARLQDRYPLEKDGIKHFFQDFLKLYRATFNNEKSQILDKYRDQTYGAMLNAFLHNDELKMILSGQWGYIGLPPTKASAIGMCQMMINYLKDGAFFPAGGTQEFANAFFKKFIDLGGHVMLSCKAEKIIRTNNAAVGVKLQEGKELSSNLVISNIDARKTFFELLDGKLDTAFLKNIEEMRESCSFFLLYLGIGKGADLRELKRGFYHTASDASYKDTVWLYVSIPTMICPTLAPPDKQIISVVVYLEKEKYRHVINWKSFKENMTADTIGRIEKYVPDIKNYIEVIEAATPKTLERYTLNTDGAAYGWEVTVDQIGENRLSPQTPVENLYLTGHWTRPGPGICAVVSSGWGVANLIMEKEKWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVY6</accession>
    <name>A0A0M2UVY6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01541</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000160">
        <property type="protein sequence ID" value="KKO19740.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19740">
        <property type="protein sequence ID" value="KKO19740"/>
        <property type="gene ID" value="BROFUL_01541"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19740.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="54" mass="6292" checksum="3CD3B1312300B4EC" modified="2015-11-11" version="1">MIRINFYHLFQHLQGLIQFPQLVQIVCIEIASVCLIIPISEKRLKRECAGENSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW20</accession>
    <name>A0A0M2UW20_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Methyltransf_21 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02144</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19161.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19161">
        <property type="protein sequence ID" value="KKO19161"/>
        <property type="gene ID" value="BROFUL_02144"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006342">
        <property type="entry name" value="FkbM_mtfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05050">
        <property type="entry name" value="Methyltransf_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01444">
        <property type="entry name" value="fkbM_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Methyltransf_21" evidence="1">
        <location>
            <begin position="419"/>
            <end position="574"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19161.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="807" mass="92045" checksum="581FC09C2F67FD41" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW63</accession>
    <name>A0A0M2UW63_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Phage integrase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01483</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000151">
        <property type="protein sequence ID" value="KKO19815.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19815">
        <property type="protein sequence ID" value="KKO19815"/>
        <property type="gene ID" value="BROFUL_01483"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tyr recombinase" evidence="2">
        <location>
            <begin position="1"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19815.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="96" mass="10885" checksum="390DA4B167EF8684" modified="2015-11-11" version="1">MVNRYSKHFSALFKQLGIDNFTFHNLRHSFASMQSDTGADIVTTKELLGHSDITTTMRYSHKQIDVKRNAIERITDHILGIDKNRVLPLVAQAGTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW67</accession>
    <name>A0A0M2UW67_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">1-deoxy-D-xylulose 5-phosphate reductoisomerase</fullName>
            <shortName evidence="7">DXP reductoisomerase</shortName>
            <ecNumber evidence="7">1.1.1.267</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">1-deoxyxylulose-5-phosphate reductoisomerase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">2-C-methyl-D-erythritol 4-phosphate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">dxr</name>
        <name evidence="11" type="ORF">BROFUL_02524</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>2-C-methyl-D-erythritol 4-phosphate + NADP(+) = 1-deoxy-D-xylulose 5-phosphate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:13717"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
            <dbReference type="ChEBI" id="CHEBI:58262"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.267"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1 7">Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 1/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the DXR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.267" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18744.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18744">
        <property type="protein sequence ID" value="KKO18744"/>
        <property type="gene ID" value="BROFUL_02524"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3135"/>
    <dbReference type="UniPathway" id="UPA00056">
        <property type="reaction ID" value="UER00092"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030604">
        <property type="term" value="F:1-deoxy-D-xylulose-5-phosphate reductoisomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070402">
        <property type="term" value="F:NADPH binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019288">
        <property type="term" value="P:isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00183">
        <property type="entry name" value="DXP_reductoisom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003821">
        <property type="entry name" value="DXP_reductoisomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013644">
        <property type="entry name" value="DXP_reductoisomerase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013512">
        <property type="entry name" value="DXP_reductoisomerase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026877">
        <property type="entry name" value="DXPR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036169">
        <property type="entry name" value="DXPR_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30525">
        <property type="entry name" value="PTHR30525"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08436">
        <property type="entry name" value="DXP_redisom_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02670">
        <property type="entry name" value="DXP_reductoisom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13288">
        <property type="entry name" value="DXPR_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006205">
        <property type="entry name" value="Dxp_reductismrs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69055">
        <property type="entry name" value="SSF69055"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00243">
        <property type="entry name" value="Dxr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6 7" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="3 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 7" id="KW-0521">NADP</keyword>
    <keyword evidence="5 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DXP_reductoisom" evidence="8">
        <location>
            <begin position="4"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="domain" description="DXP_redisom_C" evidence="9">
        <location>
            <begin position="142"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="domain" description="DXPR_C" evidence="10">
        <location>
            <begin position="257"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="7"/>
            <end position="36"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="123"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="146"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="148"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="172"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="195"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00183"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF08436"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF13288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO18744.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="380" mass="41491" checksum="4D6DBD274E618D53" modified="2015-11-11" version="1">MKKIVVLGSTGSIGKNTLEVARNLKDKFQVVGLSSNSRWELLAEQVEEFKPRYVALCDGELAKKLQQRFQGTHPEMLAGNNCLQEMVLNCNADIVVSAVVGAVGLPAAIAAIERGKTLALANKESLVMAGHIVMSLAKKDQILPVDSEHSAIFQSLRSGKSCEVKRVIITASGGPFCDYPADKLPDVKPAQALKHPTWQMGQKITIDSATLMNKALEIIEAKWLFGLTAEQIDVVIHPQSIIHSMVEFCDGSVIAQMGSPDMKVPIQYALTYPERSPLRVKGFDLPALGSLTFKKPDAEKFPALRLGYQVAREGGTTGATLNAANEVAVQAFLDGQIKFTEIAMYVEKVISHHHFIKNPCLEDILAADAWARQEMKKCLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW83</accession>
    <name>A0A0M2UW83_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">tRNA(FMet)-specific endonuclease VapC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">vapC_1</name>
        <name evidence="2" type="ORF">BROFUL_01437</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000147">
        <property type="protein sequence ID" value="KKO19835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19835">
        <property type="protein sequence ID" value="KKO19835"/>
        <property type="gene ID" value="BROFUL_01437"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1771"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002716">
        <property type="entry name" value="PIN_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01850">
        <property type="entry name" value="PIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PINc" evidence="1">
        <location>
            <begin position="6"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="138" mass="15431" checksum="007461764346835A" modified="2015-11-11" version="1">MKDAFVLDACALIAFLNDEDGSDKVEAILLKAFEEECVVYMNKINMPEVYYGVFREEGKGKAEGILSKILALPLQTIDTLEDAVFKEAGRLKAIYRISLADSLALAEAKTRGARIMTADHHEFDTLDKKGEVAFLWIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWJ2</accession>
    <name>A0A0M2UWJ2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01342</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000139">
        <property type="protein sequence ID" value="KKO19950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19950">
        <property type="protein sequence ID" value="KKO19950"/>
        <property type="gene ID" value="BROFUL_01342"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="324" mass="36488" checksum="1951C5DB3734EE72" modified="2015-11-11" version="1">MEYFNLSLLEKLTNAGPRLPWIKKWLIEEIWSPSHYHAVSPTEYLKKGEASINRFETLIAASADRIYEELLSPPDISKQLFNVLSDSQTAVAVFDGLSLREIPIMIKLAEKSGFKIVEIGCSHAAIPSETMNFIERELQCAGVGPSQLAGRRELTDRGITALYSGSPTQSIGNIHENNALLVWSAFPDNTYTDSGARFDHHFEHIHVQFETAWMNTVQQIKGKDRIIITSDHGYLFFGTGMDFVRSSQETQKLNEYFGNNRYAYLKENPNTPSSDDILIDAKRLVAMVKGRVKTRSTGEAAVKLYKHGGLSLMEMLTPWIVLEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWJ6</accession>
    <name>A0A0M2UWJ6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Arylsulfatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01940</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000199">
        <property type="protein sequence ID" value="KKO19341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19341">
        <property type="protein sequence ID" value="KKO19341"/>
        <property type="gene ID" value="BROFUL_01940"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2414"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008484">
        <property type="term" value="F:sulfuric ester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000917">
        <property type="entry name" value="Sulfatase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00884">
        <property type="entry name" value="Sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="SSF53649"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sulfatase" evidence="1">
        <location>
            <begin position="2"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="375" mass="43070" checksum="F9EE4CD484BE3F85" modified="2015-11-11" version="1">MHGFDEFFGNLYHLNAEEEPEHPDYPKNPEFRKKFGPRGVIRARADGKGGQTVEDTGPLTKKRMETVDEETLAAAKDFIQRQVKAGKPFFTWWNATRMHFRTHVKAEHRGISGQDEYSDGMVEHDRHVGELLKLLDDLKIADNTVVFYSTDNGPHYNTWPDAGTTPFRSEKNTNWEGAFRVPAFVRWPGHFPAGVTLNGIVGHEDWLPTLAAIAGDSDIKDKLAKGTELNGRRYRNYIDGTNMLDYFSGKVKESPRHEVVYTGDEGQILAMRFDDWKAVFQEQKEEKTVRIWLEPFTELRAPMLFNLRRDPFEKAQHASNTYWDWYIDHIFVIVPLQAMAGKFLTTMKEYPPSQTPGSFNLEKIKKQIESAAGGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWL5</accession>
    <name>A0A0M2UWL5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Metallo-beta-lactamase superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01318</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000138">
        <property type="protein sequence ID" value="KKO19970.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19970">
        <property type="protein sequence ID" value="KKO19970"/>
        <property type="gene ID" value="BROFUL_01318"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1631"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="47"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19970.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="457" mass="50740" checksum="2BF2899470D1DB59" modified="2015-11-11" version="1">MRVVRSSGEYYHVKIRGVEGWIKASDTQQERLLEIVFVDIGQGDGALVITPDDRKYIIDAGEGDNMYRFLRWRFGKFRQPVIFDAAIISHSDSDHYGGFEEIFKEPNVKFRAVYHNGLMERTSVRKAGILGQPKKSGAHSYITDLVPTLEALRTFLSKPSAWKDKRYPTMLNKALEAGRFEDFKMLSAGDRHFPGHGPGSTLEIQVLGPYPETVNDTLALRWLGDVGKTKNGHSIVFRFLIGGVSIFMGGDLNLESCRLLLEKHTGLSPQPKTSEDEAALVAGGQRIFGCDIAKACHHGSADLFIPFLKSIHPIATVVSSGDDEPHAHPRADALGAMGRCGRGERPLIFSTELSRSAKESIKHPNVLREQLAALLKRITDAKTDKQRALAQKKFDEATANLDRSVAVFGAINLRTDGRKVVMAYKLEQSTPSKGWDIYQMEPIGINGPLGYQSKYDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWL7</accession>
    <name>A0A0M2UWL7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ABC transporter ATP-binding and permease component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_01077</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20227.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20227">
        <property type="protein sequence ID" value="KKO20227"/>
        <property type="gene ID" value="BROFUL_01077"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1342"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="83"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="186"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="276"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="2"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="364"/>
            <end position="599"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="398"/>
            <end position="405"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO20227.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="606" mass="67636" checksum="C90F6751CFE5A911" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWL8</accession>
    <name>A0A0M2UWL8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00814</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000103">
        <property type="protein sequence ID" value="KKO20458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20458">
        <property type="protein sequence ID" value="KKO20458"/>
        <property type="gene ID" value="BROFUL_00814"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1030"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005229">
        <property type="entry name" value="CHP00255"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013551">
        <property type="entry name" value="DUF1732"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013527">
        <property type="entry name" value="YicC-like_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30636">
        <property type="entry name" value="PTHR30636"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08340">
        <property type="entry name" value="DUF1732"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03755">
        <property type="entry name" value="YicC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00255">
        <property type="entry name" value="TIGR00255"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YicC_N" evidence="1">
        <location>
            <begin position="2"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1732" evidence="2">
        <location>
            <begin position="210"/>
            <end position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08340"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20458.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="294" mass="34073" checksum="5749D9D8B9EC28F9" modified="2015-11-11" version="1">MLKSMTGFGIAEYKDTERSLRVELRSVNNRFLKIDSRLPDMLQAFESKIEQSIREKINRGTVLVNVNYQSLLQESEYVLNSGRLKEYYRLLGDVKKEIGSREKLSVNTLILLPGVLQKSKNNHEDADDLLSRCILLVDEALMKMLQMREKEGKHLAEDIEQRKTGILAMLDKIEMRAPVVVQEYSKRLQNRVASLLAGTNIELTDSNLCREIALFAERCDISEEISRLKSHMHQLQETIHLNEPVGRKLDFIVQEMFRETNTMCSKANDSVMLRDLVEVKTEIEKIREQIFNIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWS5</accession>
    <name>A0A0M2UWS5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01883</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000194">
        <property type="protein sequence ID" value="KKO19421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19421">
        <property type="protein sequence ID" value="KKO19421"/>
        <property type="gene ID" value="BROFUL_01883"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="225" mass="24603" checksum="9E5F8A1264114FE7" modified="2015-11-11" version="1">MSLVLGPIHHWMYGKIKTTEGRESAIVSAFKTKYGADAEKILEQVYKKYPKSSGNKPLEELLANKPIHQGIQSLIIEVETREAATIAAFCAKFDDAAKIAAEVARNHGKSCGKEAVKNKGLTPADCNNTAKAFEVMGEYLCDGMPCDRGAQVVSESEKSTSWDHESCVHEPYWQDAGADFLTMCNIVNEWIAGFGEGINSQIAYQREKAIACGDPSCLSSFKIKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWY0</accession>
    <name>A0A0M2UWY0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02298</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO19004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19004">
        <property type="protein sequence ID" value="KKO19004"/>
        <property type="gene ID" value="BROFUL_02298"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644057" evidence="1">
        <location>
            <begin position="25"/>
            <end position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="189" mass="21664" checksum="35D5F503F1DD459F" modified="2015-11-11" version="1">MKKMRNMFQRTLLLLFLVSGVVYANEENIYYARCNLKVFKGNYITWVNWQDSQTFIPVGTKLKVTRSGSKASLINAETGDRYTLDIGAKGDEFLEKYVIKKQPVDIVSLPKEIQASINNTTAEIGMTKKHVYMSMGPPIGPKSARTNKMTYEDIMNINMWVYAKRRFQNINITFDANTGKAKKVEGIWK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWZ0</accession>
    <name>A0A0M2UWZ0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Adenosine 5'-phosphosulfate reductase</fullName>
            <shortName evidence="3">APS reductase</shortName>
            <ecNumber evidence="3">1.8.4.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">5'-adenylylsulfate reductase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Thioredoxin-dependent 5'-adenylylsulfate reductase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3 5" type="primary">cysH</name>
        <name evidence="5" type="ORF">BROFUL_01197</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the formation of sulfite from adenosine 5'-phosphosulfate (APS) using thioredoxin as an electron donor.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>[thioredoxin]-disulfide + AMP + 2 H(+) + sulfite = [thioredoxin]-dithiol + adenosine 5'-phosphosulfate</text>
            <dbReference type="Rhea" id="RHEA:21976"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17359"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="ChEBI" id="CHEBI:58243"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="1.8.4.10"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="3">Binds 1 [4Fe-4S] cluster per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3">Sulfur metabolism; hydrogen sulfide biosynthesis; sulfite from sulfate.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the PAPS reductase family. CysH subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.8.4.10" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000127">
        <property type="protein sequence ID" value="KKO20085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20085">
        <property type="protein sequence ID" value="KKO20085"/>
        <property type="gene ID" value="BROFUL_01197"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1479"/>
    <dbReference type="UniPathway" id="UPA00668"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004604">
        <property type="term" value="F:phosphoadenylyl-sulfate reductase (thioredoxin) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019379">
        <property type="term" value="P:sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01713">
        <property type="entry name" value="PAPS_reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00063">
        <property type="entry name" value="CysH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004511">
        <property type="entry name" value="PAPS/APS_Rdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002500">
        <property type="entry name" value="PAPS_reduct"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01507">
        <property type="entry name" value="PAPS_reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000857">
        <property type="entry name" value="PAPS_reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 3 5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PAPS_reduct" evidence="4">
        <location>
            <begin position="69"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile; cysteine thiosulfonate intermediate" evidence="3">
        <location>
            <position position="268"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="151"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="152"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="236"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="239"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01507"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="278" mass="32076" checksum="F69F062E903DBDE0" modified="2015-11-11" version="1">MFTLYLTAVWSIVGTMLISPGENRLLIQRETTMKDLLELDVATANKQLDGFTVTERISWAVETFGRDAVLLSSMQNSASVLMHCFYRMELDNEVLFVDTGYHFRETLQLRDEFMRRYHLSIVTLYPELTPEQQEKKFEKKLYFSRDGQKECCRLRKTVPFITHMKQFGRRLAMVGLRRSEGGRRAKLAPLIQDPRTGGYTLHPIFDWTDEQIQTYLEKNDVPVHPLHKQNYPSIGCECCTTPVEPGEDPRAGRWRHLASAIDEGPKYCNINCSDGSGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX08</accession>
    <name>A0A0M2UX08_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_01788</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000186">
        <property type="protein sequence ID" value="KKO19511.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19511">
        <property type="protein sequence ID" value="KKO19511"/>
        <property type="gene ID" value="BROFUL_01788"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037524">
        <property type="entry name" value="PA14/GLEYA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011658">
        <property type="entry name" value="PA14_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038731">
        <property type="entry name" value="RgtA/B/C-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07691">
        <property type="entry name" value="PA14"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13231">
        <property type="entry name" value="PMT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00758">
        <property type="entry name" value="PA14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51820">
        <property type="entry name" value="PA14"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="358"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="404"/>
            <end position="425"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="514"/>
            <end position="534"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="540"/>
            <end position="560"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="567"/>
            <end position="584"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="596"/>
            <end position="622"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="629"/>
            <end position="651"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="686"/>
            <end position="703"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="734"/>
            <end position="752"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="764"/>
            <end position="785"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="791"/>
            <end position="809"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="821"/>
            <end position="839"/>
        </location>
    </feature>
    <feature type="domain" description="PA14" evidence="9">
        <location>
            <begin position="48"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="domain" description="PA14" evidence="9">
        <location>
            <begin position="197"/>
            <end position="345"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51820"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19511.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="848" mass="95635" checksum="7AA97530A5296367" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX09</accession>
    <name>A0A0M2UX09_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Metallophos domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00883</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000107">
        <property type="protein sequence ID" value="KKO20392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20392">
        <property type="protein sequence ID" value="KKO20392"/>
        <property type="gene ID" value="BROFUL_00883"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004843">
        <property type="entry name" value="Calcineurin-like_PHP_ApaH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00149">
        <property type="entry name" value="Metallophos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="320"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="domain" description="Metallophos" evidence="2">
        <location>
            <begin position="69"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="344" mass="39367" checksum="F0F5E1C5C031B79F" modified="2015-11-11" version="1">MATQKRTLLSSCFTWGKLIFILLCVSFFCLESYILLVQHFEGNKDVSHLSGNFPQNRGALSQEKQRDEFSFAVVGDTKSSGTFERIAEKLRKEPLSFIVFLGDFVYKGTEGEHNFFKAEYATEFSFPYPAFFVLGNHDVDSKNFPISRFEEVYGPSIFSFEYQECLFVVLRILDNPYPNEESLRFLEKLISEKAASHYQKTFVFMHIPPPISSDFSARSFEGSDEIVSLIEKLKPTYVITGDYHGYARIKRKGTVYLVTGGGGAHLEAKKFGSFHHAIVLRVVKDDVSERILVVDRDEDLEDRIERFALASAYPWLKDNLLVTAFLNSVVLAILVLLCRRIYQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXC3</accession>
    <name>A0A0M2UXC3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Y1_Tnp domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02157</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000214">
        <property type="protein sequence ID" value="KKO19114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19114">
        <property type="protein sequence ID" value="KKO19114"/>
        <property type="gene ID" value="BROFUL_02157"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2693"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1290">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002686">
        <property type="entry name" value="Transposase_17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036515">
        <property type="entry name" value="Transposase_17_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM01321">
        <property type="entry name" value="Y1_Tnp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143422">
        <property type="entry name" value="SSF143422"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Y1_Tnp" evidence="1">
        <location>
            <begin position="21"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="188" mass="22284" checksum="FDDF3E051973147E" modified="2015-11-11" version="1">MEKFKNRYRIPSARAPWWDYSWRGCYFITICTAQHECIFGKIRDGHMQPSHMGEIVLREWEQSFHIRAELFCDAFVLMPNHLHAIVRIGNADPTTIVETHGRASLQMHTNTGIAHRSPRSISSFVAGFKSSATKRINEFRNTPKIPVWQSRFHDHIIRNVDEYHRIADYIRTNPEKWENDTFFKQEIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXD0</accession>
    <name>A0A0M2UXD0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01651</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19616.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19616">
        <property type="protein sequence ID" value="KKO19616"/>
        <property type="gene ID" value="BROFUL_01651"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026406">
        <property type="entry name" value="Ver/Plancto_CHP"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04138">
        <property type="entry name" value="Plancto_Ver_chp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19616.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="147" mass="17125" checksum="3CCB1D7084B8E0C4" modified="2015-11-11" version="1">MDMTKAWHKIKEIMKKDPRYSLQAYQFVFEALDYTTNMLGKNQHKTTDADRHVTGKQLMEGIRKYALKQFGFMSLTVFELWGIKQDADFGNIVFNLVESGLMGKTETDSPEDFKNSYDLKKVFDEGFKFDGKYDIHLSLKALGIMKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXI8</accession>
    <name>A0A0M2UXI8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Molybdenum ABC transporter ATP-binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_00477</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000063">
        <property type="protein sequence ID" value="KKO20798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20798">
        <property type="protein sequence ID" value="KKO20798"/>
        <property type="gene ID" value="BROFUL_00477"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.596"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="1"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="31"/>
            <end position="38"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="292" mass="32907" checksum="14490DD979A81B98" modified="2015-11-11" version="1">MIKVRIKKRWGGFGLDVNFEIPHEKVTALFGPSGSGKSSILRLISGLERADGGMIHKGEEVWYDESKAINILPQQRSVGFVFQDYALFPHVTVERNVAYGIKEKKRLKEAKDLLSLVGLSGYEHFYPAQLSGGQKQRVALVRALARRPDILLLDEPLSALDWETRRQLQEDLKRIIKQLCITTLYVTHDVTEVYKLADYVIVLEAGKVVKQGIPEEIFMGRRLSTRIQIAGKVVDIESDAIMAAVTVLHEGQYFKTLIDTEEVRRLNLRIGDDVVIGAKSSDVILCKVFTET</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXJ0</accession>
    <name>A0A0M2UXJ0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PHB domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00701</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20582">
        <property type="protein sequence ID" value="KKO20582"/>
        <property type="gene ID" value="BROFUL_00701"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001107">
        <property type="entry name" value="Band_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036013">
        <property type="entry name" value="Band_7/SPFH_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01145">
        <property type="entry name" value="Band_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117892">
        <property type="entry name" value="SSF117892"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="domain" description="PHB" evidence="2">
        <location>
            <begin position="42"/>
            <end position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="394" mass="44894" checksum="EB7C6173FC9F24CC" modified="2015-11-11" version="1">MDKNFKSKVKYYYFYRKIITALIIIGVIIGGIYGGKELSWKEIAADEVAVIVNNLTGGIKLINRAGAVLYYPFIQDIYVLDKRVQILKMTAAEIDEKHPQGNPLMVKSIDGGDVVLDLLIHYMLLPDYAVHVVQNTGVGDIFKQKWLYDYSRTICYYCYGELTLGEFPMASKRDIKAQKALKEINALLESHGFTVTSIDLSDYRYYREYAEKIQERRLADKEVEEQKTRATAAKENQRRVVVEETKKLEVEVARFRGECDKRIMDARGSGEAKKQDADAYLIRARFEADAEYERLARDAEAILATLKTEAEGVRLLRNALEGDGGRNLVRLEYAKRLKQAIVRSTPIVRQGIETPQSIQRFKYIEDAPKIDYMFPEPPDAALVSPLKPGPDKSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXN0</accession>
    <name>A0A0M2UXN0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">UPF0056 membrane protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_00962</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the UPF0056 (MarC) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000116">
        <property type="protein sequence ID" value="KKO20330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20330">
        <property type="protein sequence ID" value="KKO20330"/>
        <property type="gene ID" value="BROFUL_00962"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002771">
        <property type="entry name" value="Multi_antbiot-R_MarC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33508">
        <property type="entry name" value="PTHR33508"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01914">
        <property type="entry name" value="MarC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00427">
        <property type="entry name" value="TIGR00427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="55"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="83"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="113"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="141"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="180"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU362048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="208" mass="22856" checksum="88739AF81D498070" modified="2015-11-11" version="1">MKELSFLRIEHWHNFLLAFIPLFIAIDVIGVLPIFMSLVEGIEKPQKTKIIRQSVITALTVSIGFLALGKFVFSVLGIEIYDFKLAGGLLLLVFAINDLLFAEKGKRTIASTIGVVPLGIPLVVGPAVLTTTIVAVDTYGYIPTVTSLVVNLILVWLVFQKSDFIYRLMGDGGSKAFAKVASLLLAAIAVMMIRRGFMDVLFYLKYPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXN3</accession>
    <name>A0A0M2UXN3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01560</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000163">
        <property type="protein sequence ID" value="KKO19726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19726">
        <property type="protein sequence ID" value="KKO19726"/>
        <property type="gene ID" value="BROFUL_01560"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="86" mass="9317" checksum="283D994632E062B0" modified="2015-11-11" version="1">MDSALKGKRLNPPYKNCSSIGIAYHAFQMHAGNLCGCGMNEMVVNDLDMERILVMAGCACITSHVTGFDLAGGAMPYVKIVWIHNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXS8</accession>
    <name>A0A0M2UXS8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Radical SAM core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_02016</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000205">
        <property type="protein sequence ID" value="KKO19274.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19274">
        <property type="protein sequence ID" value="KKO19274"/>
        <property type="gene ID" value="BROFUL_02016"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2512"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015995">
        <property type="term" value="P:chlorophyll biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015979">
        <property type="term" value="P:photosynthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.550">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023885">
        <property type="entry name" value="4Fe4S-binding_SPASM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034391">
        <property type="entry name" value="Cmo-like_SPASM_containing"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013580">
        <property type="entry name" value="LI-POR_suB-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042298">
        <property type="entry name" value="P-CP_red_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08369">
        <property type="entry name" value="PCP_red"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13186">
        <property type="entry name" value="SPASM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01387">
        <property type="entry name" value="BtrN-like_SPASM_domain_contain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04085">
        <property type="entry name" value="rSAM_more_4Fe4S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="5">
        <location>
            <begin position="2"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19274.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="644" mass="73351" checksum="ED3EED19749FDC57" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXT4</accession>
    <name>A0A0M2UXT4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02010</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000203">
        <property type="protein sequence ID" value="KKO19279.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19279">
        <property type="protein sequence ID" value="KKO19279"/>
        <property type="gene ID" value="BROFUL_02010"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="60"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="84"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="112"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="145"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19279.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="186" mass="20650" checksum="586F8C2E1C2EA2F8" modified="2015-11-11" version="1">MANGTNPSITSLQISNHLARLVLVTFILTFIVVRVLVILIMSRRIPDLYLHLGGTHVHHLNYGIFLLAGVGAYQLFWHPGGRNLEIAAIIYGSGMALTFDEFGMWLHLGGPYWQRASLDAITVLSAVFGLITFAPSLKRFHFQHWAGAVIIAVAVGVFFFMLFESFKYVGKIVIPVLQEIEVTSPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXU0</accession>
    <name>A0A0M2UXU0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00906</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000109">
        <property type="protein sequence ID" value="KKO20385.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20385">
        <property type="protein sequence ID" value="KKO20385"/>
        <property type="gene ID" value="BROFUL_00906"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035069">
        <property type="entry name" value="TTHA1013/TTHA0281-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143100">
        <property type="entry name" value="SSF143100"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20385.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="89" mass="10531" checksum="C42D16F6EB216145" modified="2015-11-11" version="1">MKLQLIIEVWKKGQWFLARAPELDFVSQGRTPEEARKNLMDVINIQFEEMKDMGTLEEYLLEYGYEIKDDELRPQSEMIGFEKSVISLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY44</accession>
    <name>A0A0M2UY44_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Isoleucine--tRNA ligase</fullName>
            <ecNumber evidence="10">6.1.1.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Isoleucyl-tRNA synthetase</fullName>
            <shortName evidence="10">IleRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">ileS</name>
        <name evidence="15" type="ORF">BROFUL_00252</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9 10">Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>ATP + L-isoleucine + tRNA(Ile) = AMP + diphosphate + L-isoleucyl-tRNA(Ile)</text>
            <dbReference type="Rhea" id="RHEA:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:9666"/>
            <dbReference type="Rhea" id="RHEA-COMP:9695"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58045"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78528"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="10">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="10">IleRS has two distinct active sites: one for aminoacylation and one for editing. The misactivated valine is translocated from the active site to the editing site, which sterically excludes the correctly activated isoleucine. The single editing site contains two valyl binding pockets, one specific for each substrate (Val-AMP or Val-tRNA(Ile)).</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.5" evidence="10"/>
    <dbReference type="EMBL" id="LAQJ01000031">
        <property type="protein sequence ID" value="KKO21003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21003">
        <property type="protein sequence ID" value="KKO21003"/>
        <property type="gene ID" value="BROFUL_00252"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.311"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA editing activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004822">
        <property type="term" value="F:isoleucine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006428">
        <property type="term" value="P:isoleucyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07960">
        <property type="entry name" value="Anticodon_Ia_Ile_BEm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.740.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02002">
        <property type="entry name" value="Ile_tRNA_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002300">
        <property type="entry name" value="aa-tRNA-synth_Ia"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033708">
        <property type="entry name" value="Anticodon_Ile_BEm"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002301">
        <property type="entry name" value="Ile-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023585">
        <property type="entry name" value="Ile-tRNA-ligase_type1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013155">
        <property type="entry name" value="M/V/L/I-tRNA-synth_anticd-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009008">
        <property type="entry name" value="Val/Leu/Ile-tRNA-synth_edit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010663">
        <property type="entry name" value="Znf_FPG/IleRS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08264">
        <property type="entry name" value="Anticodon_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00133">
        <property type="entry name" value="tRNA-synt_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06827">
        <property type="entry name" value="zf-FPG_IleRS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00984">
        <property type="entry name" value="TRNASYNTHILE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="SSF47323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50677">
        <property type="entry name" value="SSF50677"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00392">
        <property type="entry name" value="ileS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 10 11" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="6 10 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 10 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 10 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 10 11" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="tRNA-synt_1" evidence="12">
        <location>
            <begin position="27"/>
            <end position="650"/>
        </location>
    </feature>
    <feature type="domain" description="Anticodon_1" evidence="14">
        <location>
            <begin position="695"/>
            <end position="850"/>
        </location>
    </feature>
    <feature type="domain" description="zf-FPG_IleRS" evidence="13">
        <location>
            <begin position="908"/>
            <end position="934"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="10">
        <location>
            <begin position="57"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="10">
        <location>
            <begin position="612"/>
            <end position="616"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="571"/>
        </location>
        <ligand>
            <name>L-isoleucyl-5'-AMP</name>
            <dbReference type="ChEBI" id="CHEBI:178002"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="615"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="910"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="913"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="930"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="933"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00025217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU363035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF06827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF08264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KKO21003.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="938" mass="108191" checksum="422340E727C11810" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYA6</accession>
    <name>A0A0M2UYA6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">VWFA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01833</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000190">
        <property type="protein sequence ID" value="KKO19454.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19454">
        <property type="protein sequence ID" value="KKO19454"/>
        <property type="gene ID" value="BROFUL_01833"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2281"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00092">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="55"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="310"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="domain" description="VWFA" evidence="2">
        <location>
            <begin position="90"/>
            <end position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19454.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="338" mass="38286" checksum="EC3A837676778CD9" modified="2015-11-11" version="1">MKYGNLSYLYLLAVIPVLSLGYILVFKKRMCDLNTFANLALLQKAGLPIHKRKRWLKAVLMIVGILFLIFALVEPKWGYHWEDVEKKGIDIVIALDTSRSMLADDVKPNRLEVAKREIEDLLHVLGGDRIGLVVFAGSAFPYCPLTSDYGAFRLFLQDVNTNIIPLGGTALAEAIRKGITAFEADSKNHKAIILITDGENHEDDPLKAATAAKEQGIVLYTVGVGKKDGSYIRVRDESGQERLLKDRQGQVVKSRLDEIILNKIALETGGLYTPAYDTRWGLEKIYQESIAKIEESTYKTQRVKRYVNRYQIPLFIAMVLIAMEGFWFEKKVTNVRFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYD4</accession>
    <name>A0A0M2UYD4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00415</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000056">
        <property type="protein sequence ID" value="KKO20857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20857">
        <property type="protein sequence ID" value="KKO20857"/>
        <property type="gene ID" value="BROFUL_00415"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="33" mass="3884" checksum="DDB8C00451870160" modified="2015-11-11" version="1">MILNTGIYDANALFNQRLRFPYFVLGYRANTVM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYK2</accession>
    <name>A0A0M2UYK2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01224</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000133">
        <property type="protein sequence ID" value="KKO20061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20061">
        <property type="protein sequence ID" value="KKO20061"/>
        <property type="gene ID" value="BROFUL_01224"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="62" mass="6751" checksum="5186672AAF99475E" modified="2015-11-11" version="1" fragment="single">SREFEIPIPSAAQPQPNFLYESGEIASEKALAMTATMHFDGTLHVVIASEAKQSFTHKNSTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYM5</accession>
    <name>A0A0M2UYM5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00578</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000081">
        <property type="protein sequence ID" value="KKO20690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20690">
        <property type="protein sequence ID" value="KKO20690"/>
        <property type="gene ID" value="BROFUL_00578"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20690.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="42" mass="4931" checksum="A3A9F7CA477374B3" modified="2015-11-11" version="1">MDQYHPCGLAHKYPEINRRISDKEFEDALRIGREEGISRLAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYP6</accession>
    <name>A0A0M2UYP6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex</fullName>
            <ecNumber evidence="4">2.3.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_00052</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 4">
            <name>(R)-lipoate</name>
            <dbReference type="ChEBI" id="CHEBI:83088"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the 2-oxoacid dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.-" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000007">
        <property type="protein sequence ID" value="KKO21213.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21213">
        <property type="protein sequence ID" value="KKO21213"/>
        <property type="gene ID" value="BROFUL_00052"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.65"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.559.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003016">
        <property type="entry name" value="2-oxoA_DH_lipoyl-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001078">
        <property type="entry name" value="2-oxoacid_DH_actylTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023213">
        <property type="entry name" value="CAT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036625">
        <property type="entry name" value="E3-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004167">
        <property type="entry name" value="PSBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00198">
        <property type="entry name" value="2-oxoacid_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00364">
        <property type="entry name" value="Biotin_lipoyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02817">
        <property type="entry name" value="E3_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47005">
        <property type="entry name" value="SSF47005"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00189">
        <property type="entry name" value="LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51826">
        <property type="entry name" value="PSBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3 4" id="KW-0450">Lipoyl</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Lipoyl-binding" evidence="5">
        <location>
            <begin position="2"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="domain" description="Peripheral subunit-binding (PSBD)" evidence="6">
        <location>
            <begin position="122"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001938"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007317"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003423"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO21213.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="424" mass="46642" checksum="84386872B60CAB3D" modified="2015-11-11" version="1">MPVDVIMPQMGESVAEGTITRWLVHEGDRIEKEQPIVEISTDKIDTEIPAPTSGIVKKIYYPEGKTLPVQTVIAQIEAVETREGVISAVGANGRSPLPVTAKKAEAVTAVKEIERAAEREKRYSPLVRRLAKEYAVNLEEIKGSGEGGRVTKKDIMDYLSSRPGAGSAVPPAETGQKIYEKEIFIPLSPKRKITADRMVQSKRTAAHVTTVFEVDMTKVVKYRDLNKDGMTREEEIHLTYLPFITLATARALKEHPLMNASWKEEGIVQKNTINVGIAVSLEDGLIVPVIKDADKKDLVQLAKDIQDIAGRARTKKLKPEEVQEGTFTITNYGLNGSLFGTPVILLPQVAILGVGAVVKRPVVVDDAIAIRSMMYLSLSFDHRVMDGANADAFLRTIKERLEKWEVSAYGAKRSSPPTGYGGVW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYS6</accession>
    <name>A0A0M2UYS6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01664</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19629.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19629">
        <property type="protein sequence ID" value="KKO19629"/>
        <property type="gene ID" value="BROFUL_01664"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19629.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="75" mass="8923" checksum="2D162D5947828659" modified="2015-11-11" version="1">MCHKFLESIGVNGIDLKKYPMEHLPRILHLSMIIKNTCFWMKDAIIPYRLLLAEEQAKIIEEYVQYIIAFQLKEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYX7</accession>
    <name>A0A0M2UYX7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01135</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20176">
        <property type="protein sequence ID" value="KKO20176"/>
        <property type="gene ID" value="BROFUL_01135"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019867">
        <property type="term" value="C:outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004658">
        <property type="entry name" value="OMP_Slp"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37530">
        <property type="entry name" value="PTHR37530"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03843">
        <property type="entry name" value="Slp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004982">
        <property type="entry name" value="SlP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="173" mass="19239" checksum="4B06C683177835B1" modified="2015-11-11" version="1">MKKIGKGFARSYGIPVLVFLFMAGCAPVISKQVREQVRPEVTFAEVFNDPGRYKGQMIVLSGIVLKTENTKEGTLLQILQRPAGFRGKPKDVDETGGRFLALDSRYLDVNVFTEGRAVTIAGEVQGKRTLPLDKIEYTYPLISVKELYLWPATRNYHAPHSSVHIGLGVGHSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZD4</accession>
    <name>A0A0M2UZD4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_00968</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000116">
        <property type="protein sequence ID" value="KKO20336.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20336">
        <property type="protein sequence ID" value="KKO20336"/>
        <property type="gene ID" value="BROFUL_00968"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025943">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00158">
        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00676">
        <property type="entry name" value="SIGMA54_INTERACT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="7">
        <location>
            <begin position="5"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="6">
        <location>
            <begin position="144"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="5">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20336.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="470" mass="53198" checksum="93E238F31DE584DA" modified="2015-11-11" version="1">MAGEKILVIDDDTNILEVIRMRLKSWGYYVTVATDGREAKAALSTTSFHLAIVDLRLSEEDGIELMEEIIRFHPDLPIIILTAHGSIESAVEAMRKGAYSYITKPFNNEDLSFHIENALEKQYVAREVHHLRSQLGEKNGFQQIIGKEKQMERVLEQVSRIAKTECNVSLYGECGTGKEFIARVIHFNSNRSQGPFIIANLRAIPTESQEEELFGCVRGIRANAQGSKEGLISQADNGTIFLDEIGNTSPSFQIKLLRALQEGVIKPVGSAKTIKVDVRFIFASAIDLEKAVNNGTFQRDLFYKIHVAPVCLPPLRERKDDIPLLAAYFLKRFCDVLKKDIIGFTPAAIQRMVIYDWPGNVSELERKVEHAVIIANKNVIATEDLFAGTNAIKNTFNSYKDAKERFEREYLENLLKVSKGNVSTAAKMANRYRADIYKLIKKYHMDPEYYKDPLVPPRDVSNFRRYGRGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZE9</accession>
    <name>A0A0M2UZE9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00079</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000008">
        <property type="protein sequence ID" value="KKO21197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21197">
        <property type="protein sequence ID" value="KKO21197"/>
        <property type="gene ID" value="BROFUL_00079"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="5"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO21197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="166" mass="18606" checksum="94524A8EFC2BB8FB" modified="2015-11-11" version="1">MTKPRLLLVDDDKNSLDGLMKILRHDGFSVSGVLSAYDALNLISRENFDIVLTDMKMPGMGGLSLIHEVRKKELSVAIVVITAYSSEKAAAEAEKYGANYYLKKPVNIEELECIIGKLWEKQQLIARNPAAKGNLNKTHNSPAMNKNRKVIRQSDKEGEHDIHEFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZF2</accession>
    <name>A0A0M2UZF2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ADP-dependent (S)-NAD(P)H-hydrate dehydratase</fullName>
            <ecNumber evidence="6">4.2.1.136</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">ADP-dependent NAD(P)HX dehydratase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">nnrD</name>
        <name evidence="7" type="ORF">BROFUL_00046</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>(6S)-NADHX + ADP = AMP + H(+) + NADH + phosphate</text>
            <dbReference type="Rhea" id="RHEA:32223"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:64074"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="4.2.1.136"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>(6S)-NADPHX + ADP = AMP + H(+) + NADPH + phosphate</text>
            <dbReference type="Rhea" id="RHEA:32235"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:64076"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="4.2.1.136"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the NnrD/CARKD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.136" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000007">
        <property type="protein sequence ID" value="KKO21207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21207">
        <property type="protein sequence ID" value="KKO21207"/>
        <property type="gene ID" value="BROFUL_00046"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.59"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052855">
        <property type="term" value="F:ADP-dependent NAD(P)H-hydrate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046496">
        <property type="term" value="P:nicotinamide nucleotide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01171">
        <property type="entry name" value="YXKO-related"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01965">
        <property type="entry name" value="NADHX_dehydratase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017953">
        <property type="entry name" value="Carbohydrate_kinase_pred_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000631">
        <property type="entry name" value="CARKD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01256">
        <property type="entry name" value="Carb_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00196">
        <property type="entry name" value="yjeF_cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01050">
        <property type="entry name" value="YJEF_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51383">
        <property type="entry name" value="YJEF_C_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0418">Kinase</keyword>
    <keyword evidence="5 6" id="KW-0456">Lyase</keyword>
    <keyword evidence="4 6" id="KW-0520">NAD</keyword>
    <keyword evidence="3 6" id="KW-0521">NADP</keyword>
    <keyword evidence="1 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <feature type="binding site" evidence="6">
        <location>
            <position position="37"/>
        </location>
        <ligand>
            <name>(6S)-NADPHX</name>
            <dbReference type="ChEBI" id="CHEBI:64076"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="108"/>
        </location>
        <ligand>
            <name>(6S)-NADPHX</name>
            <dbReference type="ChEBI" id="CHEBI:64076"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>(6S)-NADPHX</name>
            <dbReference type="ChEBI" id="CHEBI:64076"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="198"/>
            <end position="202"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="226"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="227"/>
        </location>
        <ligand>
            <name>(6S)-NADPHX</name>
            <dbReference type="ChEBI" id="CHEBI:64076"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO21207.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="292" mass="31221" checksum="D62F496BD1959502" modified="2015-11-11" version="1">MVEVKALPDIFPRKPDSHKGDYGRVLVLAGSCGMTGAACLCSSAALRAGAGLVTLGIPESLQGIVASKLTCVMTHPLPETHLKTLSELGRQDILDFSQQFDVVAIGPGLSQYLETKRLVLWLLQSLDCPIVLDADGINALADSPGVLHQVKKQIILTPHPGEMARLMGVSSTQEIQSKRLETCRIFLRGMDRATLVLKGHQTLVVNEERFYVNKTGNPGMATAGAGDVLAGMIAAFIGQKYAPFEAAQLGVYIHGLAGDIAVRETGEMSLIATDILDALPKAFLVYRKTMGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0B5</accession>
    <name>A0A0M2V0B5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Site-specific DNA-methyltransferase (adenine-specific)</fullName>
            <ecNumber evidence="2">2.1.1.72</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00624</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 2'-deoxyadenosine in DNA + S-adenosyl-L-methionine = an N(6)-methyl-2'-deoxyadenosine in DNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:15197"/>
            <dbReference type="Rhea" id="RHEA-COMP:12418"/>
            <dbReference type="Rhea" id="RHEA-COMP:12419"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:90615"/>
            <dbReference type="ChEBI" id="CHEBI:90616"/>
            <dbReference type="EC" id="2.1.1.72"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.72" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20641.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20641">
        <property type="protein sequence ID" value="KKO20641"/>
        <property type="gene ID" value="BROFUL_00624"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.790"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009007">
        <property type="term" value="F:site-specific DNA-methyltransferase (adenine-specific) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011639">
        <property type="entry name" value="RM_methylase_Eco57I-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07669">
        <property type="entry name" value="Eco57I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Eco57I" evidence="3">
        <location>
            <begin position="104"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20641.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="394" mass="44966" checksum="4E749BB5FDEFE308" modified="2015-11-11" version="1">MASLFEREREHVRILDAGAGLGTLFAACVETLLSRNYRPLSIHVVAYENDQKILQYLKETMEWCKLICQRAGIPFQGEIRVEDFIAAVIAQAEGRLFAVHRERFTHVILNPPYKKIVGESTTRQLLDAAGFGVSNLYAAFVWLSAKLLETGGELVAITPRSFCNGPYFRRFRINLLNMMSLHRIHVFGSRNKAFRDDDVLQENVIYHMIRGERKPERLIVSSSEGTDFDKSRSRSVPYDHVILSGDRDAFIHLVLNDTDDRLMEKMEAFATSLVILGVDVSTGRVVDFRAQEYLRYLPEEGTSPLIYPCHFVSGFVSWPAESGKKPNAIAVSPQTMDLVLPAGYYVLTKRFSTKEEPRRVVAAIYDPNRLKLRLSVLRTILIIFMRKVKAYRQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0L1</accession>
    <name>A0A0M2V0L1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">GTP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00562</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000077">
        <property type="protein sequence ID" value="KKO20726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20726">
        <property type="protein sequence ID" value="KKO20726"/>
        <property type="gene ID" value="BROFUL_00562"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.704"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.250">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042116">
        <property type="entry name" value="TypA/BipA_C"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="95" mass="10954" checksum="70C7D833BCF6E29E" modified="2015-11-11" version="1">MIVGEHCEQNDITVNIIRAKKATNIRCATAEKGIKLPPPREFSLEMALEYIEDDELVEITPKTFRLRKKLLTENDRRITRRQQAVESVETSVENA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0N1</accession>
    <name>A0A0M2V0N1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00533</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000074">
        <property type="protein sequence ID" value="KKO20741.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20741">
        <property type="protein sequence ID" value="KKO20741"/>
        <property type="gene ID" value="BROFUL_00533"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20741.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="132" mass="15710" checksum="5AE82DAB7364A1A7" modified="2015-11-11" version="1">MFWHRGNSKIMRYRLNRPFLRYQLLPVLLVFPVFIMNLYSCFITPCYSDQVEYHGNTGNDAFCEENSRNVNRLDFDENEFRLPLSIGKLCEEIYPELTPNIKRHIIVINKDGRLCKPDSLGEKLIYRNTLVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0X6</accession>
    <name>A0A0M2V0X6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Polysaccharide biosynthesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00890</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000109">
        <property type="protein sequence ID" value="KKO20369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20369">
        <property type="protein sequence ID" value="KKO20369"/>
        <property type="gene ID" value="BROFUL_00890"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="51"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="89"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="124"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="156"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="180"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="220"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="258"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="300"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="330"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="363"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="387"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="419"/>
            <end position="441"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="453"/>
            <end position="475"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="492" mass="55356" checksum="5DAF2E2F7A0A08E3" modified="2015-11-11" version="1">MKSVEGFQVVSNIKTNAIKSVKWTALGEIASRSIQPITTLILARLLTPTDFGLVGVAMIVISLAQIFQDFGLGKTLIQRQTEINKSSNVIFWTNLTFSFFLYLILFVIAPLLSEFFHEPKVTKVLRVLCLQIVLVSLVSVHQALFQRQFQFKQLFLIRLFSATIPGIVSIPLAFFNTGVWALVFGTLIGALFQVFLYWRLSPWRPRFNYDYQLAKKLLGFSSWVALEALLGWLLMCGDSIILGHFLGVKELGIYRTGVIFVMLVFGTFLSHFTPIAFSAFSRLQSNLEELKQTFIKITKIICFVSFPIGIGFVILAKQGSLIIFGQKWQGIEIVIAIIGLKDAITWFVGLNPEIYRAIGRPDINSKLLFVALIYYIPIYIFAAPYGLLTFCFARFAVAIVSMGLHFFVANKILKLPFTYLYSCVRVPFISGLIIAIVIYPLTNVSGDFVGMLGLFKLIGIIILGGIIYISASWLIEKEFVKRTFKLAKESIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1R3</accession>
    <name>A0A0M2V1R3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Acetylglutamate kinase</fullName>
            <ecNumber evidence="7">2.7.2.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">N-acetyl-L-glutamate 5-phosphotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">NAG kinase</fullName>
            <shortName evidence="7">NAGK</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">argB</name>
        <name evidence="9" type="ORF">BROFUL_00665</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the ATP-dependent phosphorylation of N-acetyl-L-glutamate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ATP + N-acetyl-L-glutamate = ADP + N-acetyl-L-glutamyl 5-phosphate</text>
            <dbReference type="Rhea" id="RHEA:14629"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:44337"/>
            <dbReference type="ChEBI" id="CHEBI:57936"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.2.8"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 2/4.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the acetylglutamate kinase family. ArgB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.2.8" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000087">
        <property type="protein sequence ID" value="KKO20629.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20629">
        <property type="protein sequence ID" value="KKO20629"/>
        <property type="gene ID" value="BROFUL_00665"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.844"/>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00107"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003991">
        <property type="term" value="F:acetylglutamate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042450">
        <property type="term" value="P:arginine biosynthetic process via ornithine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04250">
        <property type="entry name" value="AAK_NAGK-C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00082">
        <property type="entry name" value="ArgB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036393">
        <property type="entry name" value="AceGlu_kinase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004662">
        <property type="entry name" value="AcgluKinase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037528">
        <property type="entry name" value="ArgB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001048">
        <property type="entry name" value="Asp/Glu/Uridylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041727">
        <property type="entry name" value="NAGK-C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00696">
        <property type="entry name" value="AA_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000728">
        <property type="entry name" value="NAGK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53633">
        <property type="entry name" value="SSF53633"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00761">
        <property type="entry name" value="argB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="1 7" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="6 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 7 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="4 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="AA_kinase" evidence="8">
        <location>
            <begin position="24"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="64"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="86"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="190"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="7">
        <location>
            <position position="29"/>
        </location>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="7">
        <location>
            <position position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00696"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20629.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="295" mass="32067" checksum="B29F0B0B322D44C7" modified="2015-11-11" version="1">MEDAIRKAGILIEALPYIRSFRNKVVVIKFGGGAMSSDEVLTNVLQDIVFMKTVGILPILVHGGGPHISQEMTRRGLSPKFVEGHRITDRETLEIARDILIHQISASIVKKIAELGNAAACIWENDFCPLKAEKYYVETKTEQGGMKKLDIGFVGRVTAIDKDRFLNLCTSCTIPIVPPIAKGDNGDVYNVNADNVAAFIAKALGAEKLVFLSNTHGIMTRPKDETSFASTLHEDEVHALIDKKVISEGMLPKALACISAVKAGVKKAHIINGMLPHALLLEIFTDKGVGTQIIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1W3</accession>
    <name>A0A0M2V1W3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Chaperonin GroEL</fullName>
            <ecNumber evidence="6">5.6.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">60 kDa chaperonin</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Chaperonin-60</fullName>
            <shortName evidence="6">Cpn60</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">groEL</name>
        <name evidence="6" type="synonym">groL</name>
        <name evidence="9" type="ORF">BROFUL_00162</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 8">Together with its co-chaperonin GroES, plays an essential role in assisting protein folding. The GroEL-GroES system forms a nano-cage that allows encapsulation of the non-native substrate proteins and provides a physical environment optimized to promote and accelerate protein folding.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6 8">Forms a cylinder of 14 subunits composed of two heptameric rings stacked back-to-back. Interacts with the co-chaperonin GroES.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the chaperonin (HSP60) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.1.7" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000017">
        <property type="protein sequence ID" value="KKO21116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21116">
        <property type="protein sequence ID" value="KKO21116"/>
        <property type="gene ID" value="BROFUL_00162"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.200"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042026">
        <property type="term" value="P:protein refolding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03344">
        <property type="entry name" value="GroEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.7.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00600">
        <property type="entry name" value="CH60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018370">
        <property type="entry name" value="Chaperonin_Cpn60_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001844">
        <property type="entry name" value="Cpn60/GroEL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002423">
        <property type="entry name" value="Cpn60/GroEL/TCP-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027409">
        <property type="entry name" value="GroEL-like_apical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027413">
        <property type="entry name" value="GROEL-like_equatorial_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027410">
        <property type="entry name" value="TCP-1-like_intermed_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00118">
        <property type="entry name" value="Cpn60_TCP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00298">
        <property type="entry name" value="CHAPERONIN60"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48592">
        <property type="entry name" value="SSF48592"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52029">
        <property type="entry name" value="SSF52029"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54849">
        <property type="entry name" value="SSF54849"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02348">
        <property type="entry name" value="GroEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00296">
        <property type="entry name" value="CHAPERONINS_CPN60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6" id="KW-0143">Chaperone</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="30"/>
            <end position="33"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="51"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="87"/>
            <end position="91"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="415"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="496"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006607"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00600"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000419"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO21116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="539" mass="57282" checksum="388CC352ABF38B50" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V202</accession>
    <name>A0A0M2V202_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PEGA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00117</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000015">
        <property type="protein sequence ID" value="KKO21156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21156">
        <property type="protein sequence ID" value="KKO21156"/>
        <property type="gene ID" value="BROFUL_00117"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013229">
        <property type="entry name" value="PEGA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08308">
        <property type="entry name" value="PEGA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PEGA" evidence="1">
        <location>
            <begin position="9"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="131" mass="15090" checksum="1DA382CCD775EC79" modified="2015-11-11" version="1">MLGGCVLRSLTIDSQPSGAIVYLDDELIGETPVTAPFTYYGTRKITLEKVDAEGRLIYERKIVYEKIKPPYYQILPLDFFAELIIPAKLKDEHYFTYQLDPIQETPKAERQKELMKNAEELRGRLANPVTH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V207</accession>
    <name>A0A0M2V207_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00122</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000015">
        <property type="protein sequence ID" value="KKO21161.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21161">
        <property type="protein sequence ID" value="KKO21161"/>
        <property type="gene ID" value="BROFUL_00122"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21161.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="176" mass="19555" checksum="177373821DA4E2A6" modified="2015-11-11" version="1">MGEGLQDNQKTVTLCPVTKQTFSGGFAMKISTSKIMTLFLVGGIATDVFAANGNKGDWGFDPKYYNYALIEGEVTSIDHDKGFLRVEGKDEQIFFCEHTEFFRGDISLPMERVFHAVKFNNDQKIESVHVNVGDMIKSRYSKFSNGKIYLDTCLAGEDLKPGDVTGGKDNTLLSEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V253</accession>
    <name>A0A0M2V253_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00055</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000007">
        <property type="protein sequence ID" value="KKO21216.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21216">
        <property type="protein sequence ID" value="KKO21216"/>
        <property type="gene ID" value="BROFUL_00055"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012347">
        <property type="entry name" value="Ferritin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="81" mass="9179" checksum="1462BCFBF1977007" modified="2015-11-11" version="1">MKLNQTSEPGAIMDVLIEAIKREQESYDYYYRAALQAAKPATRKMLLTLAEWEKGHIAELTNHVMELKAQTEIDRAITGGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2Q8</accession>
    <name>A0A0M2V2Q8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00292</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000034">
        <property type="protein sequence ID" value="KKO20979.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20979">
        <property type="protein sequence ID" value="KKO20979"/>
        <property type="gene ID" value="BROFUL_00292"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006158">
        <property type="entry name" value="Cobalamin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025274">
        <property type="entry name" value="DUF4070"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034466">
        <property type="entry name" value="Methyltransferase_Class_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13282">
        <property type="entry name" value="DUF4070"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01123">
        <property type="entry name" value="methyltransferase_(Class_B)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="B12-binding" evidence="2">
        <location>
            <begin position="8"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="3">
        <location>
            <begin position="163"/>
            <end position="395"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20979.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="493" mass="56723" checksum="2FCFE8A801DAB66F" modified="2015-11-11" version="1">MKKLVLINPHPIGNVGEENVSVLNQMPVNLGYLKTLTPKHWQVDIIDETQEPAIDEKTGDTTFGGADLVGITSVSYQAHRAYQIAAACRKRGIPVIMGGIHATSYPEEAAQHVDCVVTREAVTLWEKIIGDFEKGCLQKRYDGDLTPMELYRGLRSDRKYLKDKYKYRYSGIITTAGCPFSCEFCSVPQFQGRKYRERPIEDVLDEFESIKGQYRGLILTDENFYGHSKKSNERVRDLFKGMVDRGIYQNWFGFTSLNIYKDDETLEYMRKSGCVGVLIGIESINEEALKTMNKNVNLRISIENYFEAIANIRKHGLAVWGTMVFGNDADTPETFKQVADFVLDSHVDIMTCGILCPFINTPLYHRLNGEGRLFRTNFPEDWKYYTSHHLTYVLKNMSLQELIDGFQYLYDRIYATEVLRQRFQNAKEVLKDNMNAAMFAFRVNLDWQTVYQHLIQNLKELQTTGFYNEALKQYNQSKKAGKKVELTPIEVSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V330</accession>
    <name>A0A0M2V330_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Multiheme cytochrome c</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00188</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000020">
        <property type="protein sequence ID" value="KKO21084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21084">
        <property type="protein sequence ID" value="KKO21084"/>
        <property type="gene ID" value="BROFUL_00188"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3820.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036280">
        <property type="entry name" value="Multihaem_cyt_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005126">
        <property type="entry name" value="NapC/NirT_cyt_c_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038266">
        <property type="entry name" value="NapC/NirT_cytc_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03264">
        <property type="entry name" value="Cytochrom_NNT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48695">
        <property type="entry name" value="SSF48695"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="20"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrom_NNT" evidence="4">
        <location>
            <begin position="19"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO21084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="408" mass="45669" checksum="48BD75059E629F90" modified="2015-11-11" version="1">MERLKQVLEFIQKRKKLVGFFAIIALAVFFVTIHKVYHYSEKSEFCASCHEMKIHYDSFKASKHHNEHVENCHACHVGPGLKGYAHAKLSDGTHDSLMHSFQAYSDGAFIEIAEDSLEILNGNCIRCHSEGFTKDKSHIEYVLKSNKHRTEVYNGVALEKLTCTDCHLGVVHPHMPGDLFKAYAARKIKPYGTYEEVDCLACHKMATPDVVKEWTKGVHAVKGVTCVTCHGNDHRLIAKKRGHVSASTCGECHQNQYLDFRESKHLQGHPVAVTSKFDVISTRLLHIKDCKGCHKLSLSYDFDRVGGSCDACHPSHKFSVTEARASDACEKCHIGGPEHAQLNIAKGSIFGKVMELRQQGLISKDLVTCQSCHGPNKSHNFSKSFIPKEIDVLLFGGYGYLKPQLVHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V3E9</accession>
    <name>A0A0M2V3E9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00071</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000008">
        <property type="protein sequence ID" value="KKO21189.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21189">
        <property type="protein sequence ID" value="KKO21189"/>
        <property type="gene ID" value="BROFUL_00071"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025534">
        <property type="entry name" value="DUF4420"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14390">
        <property type="entry name" value="DUF4420"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21189.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="346" mass="40658" checksum="FBD4D2957FDE93D7" modified="2015-11-11" version="1">MNILTNLTNKTKMKERIKQIWTQLEANSAAVPGLFKLRYSGTSKCDVFLGVKFPETHRMLILKAPLTIGKEFNFRYEFRGLKFDKIYDPDDSKYLLLNLVLVDKQFKDVFDTLVADVLAAVINESDIKAILKNYSNRLIKWQSLFERFKQQGLTPEEQRGLYGEIFFLRKFIKSNSDFLNIINSWVGPEKQIRDFQSGTWSVEIKTTHQNNHQKVQISSERQLDTRDLGNLFLYHLSLEARQQSGETLNQIVDSVSEYLSTDFNSLNRFKNKLLEAGYFDQHRHLYEHTGYFIRQDVFYKVENDFPRIEERDIRNGVGDVNYSIVISQCSDFIRTEQQVFQTLMFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ50</accession>
    <name>A0A0M2UQ50_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03111</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000286">
        <property type="protein sequence ID" value="KKO18213.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18213">
        <property type="protein sequence ID" value="KKO18213"/>
        <property type="gene ID" value="BROFUL_03111"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18213.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="89" mass="9977" checksum="4B3908C3C82B4BFA" modified="2015-11-11" version="1">MDVQYGKTIPVRFKMVALRSVVGPDKGICQLKRICSVQWMGHKRRDALIPDITTGSNLTPCACQYCQEMFGLIFLRMLQNIVTAKTGKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQH7</accession>
    <name>A0A0M2UQH7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">AsmA_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03171</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18122">
        <property type="protein sequence ID" value="KKO18122"/>
        <property type="gene ID" value="BROFUL_03171"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032712">
        <property type="entry name" value="AsmA_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13502">
        <property type="entry name" value="AsmA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="domain" description="AsmA_2" evidence="2">
        <location>
            <begin position="141"/>
            <end position="336"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="368" mass="41302" checksum="C81F2DEBAE5C827C" modified="2015-11-11" version="1">MQIQRAWLTWIIIACGLAVGIPLATILILPSFISEDFLQQEVARTIKERFEPVRQIGRVSFHWPNKVAISSLTIQREDRRPEAQILLENIQGTLQLLPALWKEIAVKKIDIRQMNYENRLLVEDLVTDTFSFKKGVLTIHARFKANDGPAAVRGVIDLHQKRPVFDLTFEAKGMQLTRDIPVISLIPIFVVKEGDIGGVLSLSGSLQGNGMGRDILNKELTATVNFTVQDGYIQGNKVLSSLLEMLGEPDRYSFDSLDAVVRIKDGKIFTQKMEMQGPLAKITASGTAEFEGAISYDAQVQFHKERMGTGIEKIAGLVLEHQTLPIEIRGTTKDPKVAVKLNKENLEHLFKGLVNDFLHKPKKEKKQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQI8</accession>
    <name>A0A0M2UQI8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Formate/nitrite transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_02939</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the FNT transporter (TC 2.A.44) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000277">
        <property type="protein sequence ID" value="KKO18363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18363">
        <property type="protein sequence ID" value="KKO18363"/>
        <property type="gene ID" value="BROFUL_02939"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3640"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1080.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023271">
        <property type="entry name" value="Aquaporin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000292">
        <property type="entry name" value="For/NO2_transpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024002">
        <property type="entry name" value="For/NO2_transpt_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30520">
        <property type="entry name" value="PTHR30520"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01226">
        <property type="entry name" value="Form_Nir_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01005">
        <property type="entry name" value="FORMATE_NITRITE_TP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="25"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="63"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="110"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="154"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="185"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="233"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="273"/>
            <end position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="296" mass="32141" checksum="393F0680D327C7D7" modified="2015-11-11" version="1">MLYTGNVDAIAAVSLKKATAMKHSLIGFLTLSVIAGFYIGFGVLLMIIAAAPVAAINPGIGKIVGGAVFPIALILVIIGGAELFTGYNLLILKGTFRGTVSFGDSMLGWFWTYLGNLGGSMIFALLIYMSGVFAPDPWHTFLNKVATYKLNAPWWELFFRGIFCNWLVCLGIWSTFRCTSDSGKILMCFWVLFCFVTTGMEHSVANMTLLAIANLLPHDPEVISWGKMFGWNLVSVTLGNIVGGSFFVTFLYWFATYMDEKGARKMDAIKGGSGAGSLPRAGGSPEEIKDVKVKMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQL4</accession>
    <name>A0A0M2UQL4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">D,D-heptose 1,7-bisphosphate phosphatase</fullName>
            <ecNumber evidence="5">3.1.3.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_02894</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the gmhB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.-" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18388.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18388">
        <property type="protein sequence ID" value="KKO18388"/>
        <property type="gene ID" value="BROFUL_02894"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3586"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016791">
        <property type="term" value="F:phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006439">
        <property type="entry name" value="HAD-SF_hydro_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006549">
        <property type="entry name" value="HAD-SF_hydro_IIIA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004446">
        <property type="entry name" value="Heptose_bisP_phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006543">
        <property type="entry name" value="Histidinol-phos"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42891">
        <property type="entry name" value="PTHR42891"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004682">
        <property type="entry name" value="GmhB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00213">
        <property type="entry name" value="GmhB_yaeD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01549">
        <property type="entry name" value="HAD-SF-IA-v1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01662">
        <property type="entry name" value="HAD-SF-IIIA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01656">
        <property type="entry name" value="Histidinol-ppas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="2 5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <feature type="active site" description="Nucleophile" evidence="6">
        <location>
            <position position="10"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="6">
        <location>
            <position position="12"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="10"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="12"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="91"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="106"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="108"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="site" description="Stabilizes the phosphoryl group" evidence="7">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <feature type="site" description="Contributes to substrate recognition" evidence="7">
        <location>
            <position position="109"/>
        </location>
    </feature>
    <feature type="site" description="Stabilizes the phosphoryl group" evidence="7">
        <location>
            <position position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00031828"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR004682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR004682-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR004682-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR004682-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18388.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="185" mass="20910" checksum="844212A25057337E" modified="2015-11-11" version="1">MKKRKAVFLDRDGTMVVHEHYLSSPDQLKILPHVAQGIHRFKEHDYLVIVITNQSGIARGFFDEERLMLIHEKLDAMLKGEGALIDDWYYCPHHPEGIIERYTMDCDCRKPKPGMILAAARKYHLDLTQSLMIGDSETDMLAGKNAGCKSMLIRNRGNDDVCATSGKAIDYVVKDLMEAAGIFIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQQ0</accession>
    <name>A0A0M2UQQ0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Putative gluconeogenesis factor</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03352</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Required for morphogenesis under gluconeogenic growth conditions.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the gluconeogenesis factor family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000306">
        <property type="protein sequence ID" value="KKO17980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17980">
        <property type="protein sequence ID" value="KKO17980"/>
        <property type="gene ID" value="BROFUL_03352"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4125"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043743">
        <property type="term" value="F:LPPG:FO 2-phospho-L-lactate transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10680">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00973">
        <property type="entry name" value="Gluconeogen_factor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002882">
        <property type="entry name" value="CofD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038136">
        <property type="entry name" value="CofD-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010119">
        <property type="entry name" value="Gluconeogen_factor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041492">
        <property type="entry name" value="HAD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30135">
        <property type="entry name" value="PTHR30135"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01933">
        <property type="entry name" value="CofD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13419">
        <property type="entry name" value="HAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142338">
        <property type="entry name" value="SSF142338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01826">
        <property type="entry name" value="CofD_related"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00973"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO17980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="570" mass="64180" checksum="C347C527D9056A1D" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQS3</accession>
    <name>A0A0M2UQS3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AsmA_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03115</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000286">
        <property type="protein sequence ID" value="KKO18217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18217">
        <property type="protein sequence ID" value="KKO18217"/>
        <property type="gene ID" value="BROFUL_03115"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032712">
        <property type="entry name" value="AsmA_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13502">
        <property type="entry name" value="AsmA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AsmA_2" evidence="1">
        <location>
            <begin position="528"/>
            <end position="693"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="776" mass="86703" checksum="C47D0A708EE31805" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQT7</accession>
    <name>A0A0M2UQT7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02836</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000268">
        <property type="protein sequence ID" value="KKO18453.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18453">
        <property type="protein sequence ID" value="KKO18453"/>
        <property type="gene ID" value="BROFUL_02836"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="42"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="84"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18453.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="150" mass="16739" checksum="729309030531826B" modified="2015-11-11" version="1">MLRTISVQDTRWVAKLQEEARQLLTSLGETISSHKSFLLKSAVIFMAVKIGIILLATVSTVVFLLNTATPYLTVEMSKTQAMLFAFPLTLIMMFKVYFIGKILMTHDTSKRVIQSVVHGILLKGKQGVRRIGETVPAGLSPFSLSRVRDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQY8</accession>
    <name>A0A0M2UQY8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02773</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000264">
        <property type="protein sequence ID" value="KKO18503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18503">
        <property type="protein sequence ID" value="KKO18503"/>
        <property type="gene ID" value="BROFUL_02773"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="160" mass="17620" checksum="00DC7909E76B2980" modified="2015-11-11" version="1">MSPEKIKLCPECGSEYYAHILTCADCGIPLKMPEEVEKKGDKKPNAAEHPPDEWVAIREEGREGIRELSDLLLRNGIPSQIALPPGCGTGKCERRYLLLVAKNEANIAHDCIENFYAQKYPDIKTSQEWSSQGRCPACGYGMSPDTKACPDCGIVFMGEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR52</accession>
    <name>A0A0M2UR52_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03207</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000293">
        <property type="protein sequence ID" value="KKO18105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18105">
        <property type="protein sequence ID" value="KKO18105"/>
        <property type="gene ID" value="BROFUL_03207"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3953"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="332" mass="38990" checksum="62A3319CD03EFBAA" modified="2015-11-11" version="1">MLNFCTLFDSNYLSRGVALYESLAMHCKDFRLYIFAFDDLCYKTLTKLDFKYAQIISLHEFEDIELINIKRQRTRAEYCWTCTPSIILYSIEKFGLRECTYLDADTYFYSSPKVLLDELKNDSVIITAHRYTPKYDSTVTSGKYCVQFMTFRNDVRGLRVLKWWRHACIDSCELNPNEGKCGDQKYLDDWTTRFGGVHELEHLGGGVAPWNVQQYEVFLKQGQVCGKEVKSDRAFEIVFFHYHALKFFQNNTVELTNGGYDLSNKVKRLLYMPYIRHLKDVKKRVANLVGDFDPHGARPCPEQTGFIASIKSWTQKALQYENVRHLYNEKRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URG0</accession>
    <name>A0A0M2URG0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03066</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000285">
        <property type="protein sequence ID" value="KKO18220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18220">
        <property type="protein sequence ID" value="KKO18220"/>
        <property type="gene ID" value="BROFUL_03066"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="40" mass="4754" checksum="8F4FEB2A332EA9F5" modified="2015-11-11" version="1">MDKITLLKQLNTLAAWLIEKYEPEKDCPFWLSGSGWKSRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URG8</accession>
    <name>A0A0M2URG8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Radical SAM core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02609</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18658">
        <property type="protein sequence ID" value="KKO18658"/>
        <property type="gene ID" value="BROFUL_02609"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3236"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000385">
        <property type="entry name" value="MoaA_NifB_PqqE_Fe-S-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01305">
        <property type="entry name" value="MOAA_NIFB_PQQE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="6">
        <location>
            <begin position="20"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="282" mass="32533" checksum="20002AB2CC68ACA3" modified="2015-11-11" version="1">MKPIVIPQTYNYIATFLSLTCNLRCSYCINYFEEGNFNKKQISGKEWVEGLNRVVPREDLPLSLQGGEPSLHKDFISILNHIKPQLNVDILTNLQFDEDEFIRKVDPNRIKRKSPYASIRVSYHPATMKLEPLVKKVLTLQRNGFSVGIWGVMHPAQEAEILRAKEYCTASGIDFRTKEFLGEHNGKRYGTYRYEGACDKKFAKKVLCKTTELIIGSSGDVYRCHSDLYENRKPIGNILDEDFEIEDTFRECNVFGHCNPCDVKVKTNRFQEFGHTSVEIIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URL9</accession>
    <name>A0A0M2URL9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Thioredox_DsbH domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02592</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000239">
        <property type="protein sequence ID" value="KKO18713.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18713">
        <property type="protein sequence ID" value="KKO18713"/>
        <property type="gene ID" value="BROFUL_02592"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3219"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02955">
        <property type="entry name" value="SSP411"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008928">
        <property type="entry name" value="6-hairpin_glycosidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012341">
        <property type="entry name" value="6hp_glycosidase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004879">
        <property type="entry name" value="DUF255"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024705">
        <property type="entry name" value="Ssp411"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42899">
        <property type="entry name" value="PTHR42899"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03190">
        <property type="entry name" value="Thioredox_DsbH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006402">
        <property type="entry name" value="UCP006402_thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48208">
        <property type="entry name" value="SSF48208"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredox_DsbH" evidence="2">
        <location>
            <begin position="58"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="653"/>
            <end position="673"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="654"/>
            <end position="673"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03190"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18713.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="673" mass="77005" checksum="9C0CE47285EC300D" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URS6</accession>
    <name>A0A0M2URS6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ArsB protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">arsB_2</name>
        <name evidence="2" type="ORF">BROFUL_02514</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000236">
        <property type="protein sequence ID" value="KKO18773.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18773">
        <property type="protein sequence ID" value="KKO18773"/>
        <property type="gene ID" value="BROFUL_02514"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18773.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="72" mass="7719" checksum="829FAF0A7D995740" modified="2015-11-11" version="1" fragment="single">MQHSILMQVWWSLTPGACLGGNGSPVGASAKVITLGLANKAGCPISFKKFIVYAVPITVESIIISTLYIWLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URU9</accession>
    <name>A0A0M2URU9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02704</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000251">
        <property type="protein sequence ID" value="KKO18587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18587">
        <property type="protein sequence ID" value="KKO18587"/>
        <property type="gene ID" value="BROFUL_02704"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="48" mass="5457" checksum="60332A7F0007F38E" modified="2015-11-11" version="1" fragment="single">GGFFTFDILPCCVKNMFRNFKLMILPEGQNIFLYHVTEIGSVEIISSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US31</accession>
    <name>A0A0M2US31_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Uma2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02838</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000268">
        <property type="protein sequence ID" value="KKO18455.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18455">
        <property type="protein sequence ID" value="KKO18455"/>
        <property type="gene ID" value="BROFUL_02838"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd06260">
        <property type="entry name" value="DUF820"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1570.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012296">
        <property type="entry name" value="Nuclease_put_TT1808"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008538">
        <property type="entry name" value="Uma2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05685">
        <property type="entry name" value="Uma2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Uma2" evidence="1">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18455.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="58" mass="7031" checksum="62B73BBB137E948E" modified="2015-11-11" version="1">MYARHGVREYWIIDPEHETVDVFLLKDKEFDGKRYCLKDTIRSSVIQDLRIEGKEIFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US71</accession>
    <name>A0A0M2US71_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF362 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02376</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000227">
        <property type="protein sequence ID" value="KKO18918.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18918">
        <property type="protein sequence ID" value="KKO18918"/>
        <property type="gene ID" value="BROFUL_02376"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007160">
        <property type="entry name" value="DUF362"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04015">
        <property type="entry name" value="DUF362"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF362" evidence="1">
        <location>
            <begin position="86"/>
            <end position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18918.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="393" mass="43992" checksum="E8702885C314CE59" modified="2015-11-11" version="1">MATVHAEKTRPKVLRVYHAHATNWDFQNSVTSESRYWERVNIDACRKMIAEGLKTFTKNPTLDEAWNWILYQNGGKGYVKGQKISIKLNWNDCDPGLGDGPNGNYLVSNTQLVQAVVESLLVHVPGLRPENLLVGDPSRIPYDRIRSALAGLGVQVIEFKPDIFIASPDGRLNYPNWQDDYVCDAMFGQSTHLIEMPLLKAITPSWGVAGVLKDAQGKVGLAKASYHDNRKAWKKKHRETFSHTDRLNTLVHMNSHPWIKGKRRLIIADGLYGLFNGQHFPSGPKDDIPRPWMLFNNAFPNSILFSTDPVAIDCVMHDLVRFERMCQGLSGSFLKPVKFQKPIQLACAVAGLGTNDEPAESKVTPSPIGPVISYANIDYEVADVTFRKPGLEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US88</accession>
    <name>A0A0M2US88_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">D-alanine--D-alanine ligase</fullName>
            <ecNumber evidence="7">6.3.2.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">D-Ala-D-Ala ligase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">D-alanylalanine synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">ddl</name>
        <name evidence="11" type="ORF">BROFUL_02326</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Cell wall formation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ATP + 2 D-alanine = ADP + D-alanyl-D-alanine + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:11224"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57416"/>
            <dbReference type="ChEBI" id="CHEBI:57822"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="8">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="8">Binds 2 magnesium or manganese ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the D-alanine--D-alanine ligase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.4" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18933.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18933">
        <property type="protein sequence ID" value="KKO18933"/>
        <property type="gene ID" value="BROFUL_02326"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2891"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008716">
        <property type="term" value="F:D-alanine-D-alanine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00047">
        <property type="entry name" value="Dala_Dala_lig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000291">
        <property type="entry name" value="D-Ala_lig_Van_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005905">
        <property type="entry name" value="D_ala_D_ala"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011095">
        <property type="entry name" value="Dala_Dala_lig_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011127">
        <property type="entry name" value="Dala_Dala_lig_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07478">
        <property type="entry name" value="Dala_Dala_lig_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01820">
        <property type="entry name" value="Dala_Dala_lig_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF039102">
        <property type="entry name" value="Ddl/VanB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01205">
        <property type="entry name" value="D_ala_D_alaTIGR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00844">
        <property type="entry name" value="DALA_DALA_LIGASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 7" id="KW-0133">Cell shape</keyword>
    <keyword evidence="6 7" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 7 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8" id="KW-0464">Manganese</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 7" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="10">
        <location>
            <begin position="102"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR039102-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO18933.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="338" mass="37071" checksum="402AA2C30B921AC2" modified="2015-11-11" version="1">MKPKNVVVLMGGISPEREISLRSGNAVVKALADAGFTVSSIDVKDEKIEELDNMEKDVAFIALHGYFGEDGGVQQLLESKGIPYTGSGVNASKLAMDKLATKNCFVEAGLKTPAFVTVTEFQELHEIQHEILRLGLPVVLKPIRNGSSIGISIVKDIRDLHAGLKKAFDFGYEVLIEKYIKGRELTVGILENKALPIIEIKPAVEFFNYDAKYKDNRTEYLIVEKTAEENANKAEHSLGNIGFLPPFLYAEAQKLALQAHRVLGCRGFSRVDMLLDGKNELYLLEVNTIPGFTEKSLLPKAATADGISFSVLCEKIVDLALQGTLVSVNETIQNECLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USA9</accession>
    <name>A0A0M2USA9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">8-amino-7-oxononanoate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03447</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000315">
        <property type="protein sequence ID" value="KKO17871.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17871">
        <property type="protein sequence ID" value="KKO17871"/>
        <property type="gene ID" value="BROFUL_03447"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4234"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="1">
        <location>
            <begin position="41"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO17871.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="156" mass="16981" checksum="2B1EA781C6C9A6FA" modified="2015-11-11" version="1">MEKDFILCELEELQNRALLRDYKTIEGAQDSCVQINGRSYLSFCSNNYLGLANHPKVKQASIEAIRQYGWGTGASRLVSGNMTLHQELEKTIAAFKGTEESILFPTGYMANLGALCALVSKGDIVIGDKLNHASIIDAAASPAPRSVSIRTRMSAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USD0</accession>
    <name>A0A0M2USD0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02527</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18747">
        <property type="protein sequence ID" value="KKO18747"/>
        <property type="gene ID" value="BROFUL_02527"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005643968" evidence="1">
        <location>
            <begin position="26"/>
            <end position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="242" mass="26689" checksum="E3AB3C8AB535A0C7" modified="2015-11-11" version="1">MKKYLISGLLAISSVVFFSHSIVWAQAEEKKVLTPEEMAEAAKKLEEAQQKLKKVVKNVPSVDNAGSITGVVTCQKMRNSADAIVFIEKVGDNKFAPPTEHAVVDQLNLTYVPRVVAMQKGTTVDFPNSDAVRHNVFSPPTAALQFNLGTYPTGVVKEVLFDVVGETPLLCNVHSEMAGFAVTFENPYFAITDKDGNYTIEGVPPGKYTVKTWHEKLKELSQEVTVEAGKATKVDFDLKRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USL1</accession>
    <name>A0A0M2USL1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative adenylylsulfate reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02234</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19053">
        <property type="protein sequence ID" value="KKO19053"/>
        <property type="gene ID" value="BROFUL_02234"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2789"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008152">
        <property type="term" value="P:metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.700.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003953">
        <property type="entry name" value="FAD-binding_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037099">
        <property type="entry name" value="Fum_R/Succ_DH_flav-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015939">
        <property type="entry name" value="Fum_Rdtase/Succ_DH_flav-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030664">
        <property type="entry name" value="SdhA/FrdA/AprA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027477">
        <property type="entry name" value="Succ_DH/fumarate_Rdtase_cat_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11632">
        <property type="entry name" value="PTHR11632"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00890">
        <property type="entry name" value="FAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02910">
        <property type="entry name" value="Succ_DH_flav_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46977">
        <property type="entry name" value="SSF46977"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56425">
        <property type="entry name" value="SSF56425"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD_binding_2" evidence="3">
        <location>
            <begin position="9"/>
            <end position="379"/>
        </location>
    </feature>
    <feature type="domain" description="Succ_DH_flav_C" evidence="4">
        <location>
            <begin position="439"/>
            <end position="549"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00890"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="558" mass="63014" checksum="7B51DB728E2BB5E6" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USQ7</accession>
    <name>A0A0M2USQ7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Short chain isoprenyl diphosphate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02423</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the FPP/GGPP synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000231">
        <property type="protein sequence ID" value="KKO18877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18877">
        <property type="protein sequence ID" value="KKO18877"/>
        <property type="gene ID" value="BROFUL_02423"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008299">
        <property type="term" value="P:isoprenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00685">
        <property type="entry name" value="Trans_IPPS_HT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.600.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008949">
        <property type="entry name" value="Isoprenoid_synthase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000092">
        <property type="entry name" value="Polyprenyl_synt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033749">
        <property type="entry name" value="Polyprenyl_synt_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00348">
        <property type="entry name" value="polyprenyl_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48576">
        <property type="entry name" value="SSF48576"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00444">
        <property type="entry name" value="POLYPRENYL_SYNTHASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU004466"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="337" mass="37515" checksum="BA31A4DAF938A105" modified="2015-11-11" version="1">MELYKGLGLDMRIEESIRIYGAKIDELLKELIPPHRNDYLSAPIWHHMRTGGKRVRPALCLITCEALGGNPHDAIHFALAIEAMHNMFLIHDDIEDGDTVRRDQPTVWVEYGIANAINAGDYLLACAYKTTLASPISVGKKIGLLQALTSTYEKTVEGQALDINARAAEDFSVDKYMKMVELKTGYYLACGMVGGAIVSGVSEQVVDKIWTLGKTMGPAFQIRDDLIDLTHGKGRGGVIGSDVKEGKASFLYSYALQIAGADDKKQLRHIMLKPRDETTDADIQWVLDVYRKYGAIQHAQDFAENLVQQAYKTIDEIPVENKTIFKEIASFMAQRMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UST5</accession>
    <name>A0A0M2UST5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Transketolase</fullName>
            <ecNumber evidence="5">2.2.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">tkt</name>
        <name evidence="11" type="ORF">BROFUL_03260</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the transketolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.2.1.1" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000298">
        <property type="protein sequence ID" value="KKO18061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18061">
        <property type="protein sequence ID" value="KKO18061"/>
        <property type="gene ID" value="BROFUL_03260"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4018"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004802">
        <property type="term" value="F:transketolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd02012">
        <property type="entry name" value="TPP_TK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005475">
        <property type="entry name" value="Transketolase-like_Pyr-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005478">
        <property type="entry name" value="Transketolase_bac-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020826">
        <property type="entry name" value="Transketolase_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033248">
        <property type="entry name" value="Transketolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033247">
        <property type="entry name" value="Transketolase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005474">
        <property type="entry name" value="Transketolase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43522">
        <property type="entry name" value="PTHR43522"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02779">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02780">
        <property type="entry name" value="Transketolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00456">
        <property type="entry name" value="Transketolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00861">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52922">
        <property type="entry name" value="SSF52922"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00232">
        <property type="entry name" value="tktlase_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00802">
        <property type="entry name" value="TRANSKETOLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0786">Thiamine pyrophosphate</keyword>
    <keyword evidence="6 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Transket_pyr" evidence="10">
        <location>
            <begin position="298"/>
            <end position="469"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007131"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00861"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO18061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="610" mass="67136" checksum="AC13749D6FFB2DF2" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT28</accession>
    <name>A0A0M2UT28_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Exodeoxyribonuclease 7 large subunit</fullName>
            <ecNumber evidence="5">3.1.11.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Exodeoxyribonuclease VII large subunit</fullName>
            <shortName evidence="5">Exonuclease VII large subunit</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">xseA</name>
        <name evidence="8" type="ORF">BROFUL_03185</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>Exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield nucleoside 5'-phosphates.</text>
            <dbReference type="EC" id="3.1.11.6"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="5">Heterooligomer composed of large and small subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the XseA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.11.6" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18136">
        <property type="protein sequence ID" value="KKO18136"/>
        <property type="gene ID" value="BROFUL_03185"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3928"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009318">
        <property type="term" value="C:exodeoxyribonuclease VII complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008855">
        <property type="term" value="F:exodeoxyribonuclease VII activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006308">
        <property type="term" value="P:DNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04489">
        <property type="entry name" value="ExoVII_LU_OBF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00378">
        <property type="entry name" value="Exonuc_7_L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003753">
        <property type="entry name" value="Exonuc_VII_L"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020579">
        <property type="entry name" value="Exonuc_VII_lsu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025824">
        <property type="entry name" value="OB-fold_nuc-bd_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30008">
        <property type="entry name" value="PTHR30008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02601">
        <property type="entry name" value="Exonuc_VII_L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13742">
        <property type="entry name" value="tRNA_anti_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00237">
        <property type="entry name" value="xseA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 5" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="3 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 5" id="KW-0540">Nuclease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="tRNA_anti_2" evidence="7">
        <location>
            <begin position="21"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="domain" description="Exonuc_VII_L" evidence="6">
        <location>
            <begin position="137"/>
            <end position="361"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02601"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF13742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="377" mass="42346" checksum="BFED695227E2631D" modified="2015-11-11" version="1">MNLASPLPMFVDTAKSRNTVLTISELTRRIRGSVEQEFFNVWVLGELSNVKRPSSGHVYLTLKDAHAQLQAVIFKSVAHGLKFEIQDGLQVLAFGSVTVYEARGQYQLIVERMEPKGIGALQLAFLQLKERLEKEGLFDPAHKKPLPALPRKIAVVTSLTGAAIRDIVNVINRRFARVEILIYPVKVQGEGAALEIAQAISDLNTISNIDVMIVGRGGGSLEDLWAFNEEVVARSIFASRIPVVSAVGHEIDVTISDLVADKRALTPTEAGELVVPRYDQIMDACEKIKTRLVQALYNKILLMRSRLLRIEHSFSLKRPFDKVYRLQQDVDEIMQRLVTTGKHMVQLERERLAGIANRLDSISPLRVLSRDIRLRLW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTG7</accession>
    <name>A0A0M2UTG7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02184</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000216">
        <property type="protein sequence ID" value="KKO19102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19102">
        <property type="protein sequence ID" value="KKO19102"/>
        <property type="gene ID" value="BROFUL_02184"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="42" mass="4573" checksum="5DC1EAA573FA760B" modified="2015-11-11" version="1">MTIAINLSKTLAIFFAFATVTVLGKKTISMILHLLSPVSYCN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTI6</accession>
    <name>A0A0M2UTI6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Glycogen phosphorylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02165</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[(1-&gt;4)-alpha-D-glucosyl](n) + phosphate = [(1-&gt;4)-alpha-D-glucosyl](n-1) + alpha-D-glucose 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:41732"/>
            <dbReference type="Rhea" id="RHEA-COMP:9584"/>
            <dbReference type="Rhea" id="RHEA-COMP:9586"/>
            <dbReference type="ChEBI" id="CHEBI:15444"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58601"/>
            <dbReference type="EC" id="2.4.1.1"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the glycogen phosphorylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000214">
        <property type="protein sequence ID" value="KKO19122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19122">
        <property type="protein sequence ID" value="KKO19122"/>
        <property type="gene ID" value="BROFUL_02165"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2703"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008184">
        <property type="term" value="F:glycogen phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011834">
        <property type="entry name" value="Agluc_phsphrylas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000811">
        <property type="entry name" value="Glyco_trans_35"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00343">
        <property type="entry name" value="Phosphorylase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02094">
        <property type="entry name" value="more_P_ylases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00025174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="565" mass="64624" checksum="7B98F8D711CE3B55" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTJ4</accession>
    <name>A0A0M2UTJ4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_03038</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18311.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18311">
        <property type="protein sequence ID" value="KKO18311"/>
        <property type="gene ID" value="BROFUL_03038"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3750"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01948">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001633">
        <property type="entry name" value="EAL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035919">
        <property type="entry name" value="EAL_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013767">
        <property type="entry name" value="PAS_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00563">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13185">
        <property type="entry name" value="GAF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00989">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13426">
        <property type="entry name" value="PAS_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00052">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00065">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141868">
        <property type="entry name" value="SSF141868"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50883">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PAS" evidence="1">
        <location>
            <begin position="22"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="1">
        <location>
            <begin position="318"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="2">
        <location>
            <begin position="392"/>
            <end position="442"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="4">
        <location>
            <begin position="474"/>
            <end position="607"/>
        </location>
    </feature>
    <feature type="domain" description="EAL" evidence="3">
        <location>
            <begin position="616"/>
            <end position="870"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18311.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="891" mass="101745" checksum="DDA664B09AAB8CCB" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTN2</accession>
    <name>A0A0M2UTN2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02945</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000278">
        <property type="protein sequence ID" value="KKO18346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18346">
        <property type="protein sequence ID" value="KKO18346"/>
        <property type="gene ID" value="BROFUL_02945"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025354">
        <property type="entry name" value="DUF4258"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14076">
        <property type="entry name" value="DUF4258"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="95" mass="10423" checksum="54CCB1DD0F870E9A" modified="2015-11-11" version="1">MSIAPDFIRNGIEKQTYEISLHADDERIADGLTISELEFALSQGKILEQYPNDPRGESCLTVGFTHDGIPVHVVCGKSPSGHLILVTVYIPTMPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTZ5</accession>
    <name>A0A0M2UTZ5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">CheX domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02210</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000221">
        <property type="protein sequence ID" value="KKO19075.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19075">
        <property type="protein sequence ID" value="KKO19075"/>
        <property type="gene ID" value="BROFUL_02210"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028976">
        <property type="entry name" value="CheC-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038756">
        <property type="entry name" value="CheX-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028051">
        <property type="entry name" value="CheX-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39452">
        <property type="entry name" value="PTHR39452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13690">
        <property type="entry name" value="CheX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103039">
        <property type="entry name" value="SSF103039"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0145">Chemotaxis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CheX" evidence="2">
        <location>
            <begin position="47"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19075.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="153" mass="16357" checksum="B60283A8CD7BA969" modified="2015-11-11" version="1">MTPESMMGTVCLDIAESTKTLFETMIMMDLKHGEASLVDDTQIKTDVIGMVSFTGKCHGVIALFCSQTFALKAASALLMTELNEFTSEVKDAIGEISNMIAGNVKTKLTAQYGDMHLSIPIVITGEGLSITAVNNHPIVAETTLSCFSKDPCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU09</accession>
    <name>A0A0M2UU09_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HDc domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01749</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000181">
        <property type="protein sequence ID" value="KKO19548.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19548">
        <property type="protein sequence ID" value="KKO19548"/>
        <property type="gene ID" value="BROFUL_01749"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2166"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01966">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HDc" evidence="1">
        <location>
            <begin position="29"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19548.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="217" mass="24225" checksum="CB0A64A096B1AFA0" modified="2015-11-11" version="1">MITLEQVKNHPDVKVYIKRANDFLGVIGYTEHGERHGNYVARNARNILQELGYDANICELAAIAGYIHDIGNVVSRHSHQEHSAHLAGQFLQELNMPAEDRVLIMSAVGNHDEGTCDIVSPVAAALIIADKSDVHRSRVRSTKEITFDIHDRVNYAVTKSGLQIDVPKRTITLNLDIDKEISDMVEYFEIFTTRMVACRRAAKLLGCTFDVKVNGSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU37</accession>
    <name>A0A0M2UU37_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01685</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000176">
        <property type="protein sequence ID" value="KKO19578.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19578">
        <property type="protein sequence ID" value="KKO19578"/>
        <property type="gene ID" value="BROFUL_01685"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2086"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19578.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="251" mass="28281" checksum="7E3ECB384DDBFD44" modified="2015-11-11" version="1">MDKIVVVPLYLNTDSSTVDVLKWSIGCEVEGEPSKANYLDETVECPGEYNEQNDFCNHMGAIHRRFRSFSDIQYIATNAIDYHPDISNVLLERAQEFSTDPSNEIVLLVGHGDGDDAIDQNYRDNVMARFANDVKGMGGFYDVQYGTIREDWCDKRVGAVQEIRDKINTAVSEGRTVIWVEVRIASWTNAHGQEWDTSDCTKLGTKDLLDAGKYIRANYLLYKPTSLAAWVVSMVNDAVTNNLYVNCLPSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUP4</accession>
    <name>A0A0M2UUP4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Haloacid dehalogenase-like hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01939</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000199">
        <property type="protein sequence ID" value="KKO19340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19340">
        <property type="protein sequence ID" value="KKO19340"/>
        <property type="gene ID" value="BROFUL_01939"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2413"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644193" evidence="1">
        <location>
            <begin position="17"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="323" mass="36434" checksum="45A211AEC30E22BC" modified="2015-11-11" version="1">MLATLFVVSFTMTAFAADPLPSWNAGTTKQSIEQFVAKATRQASPDFVPVAERIAVFDNDGTLWAEQPIYFQFLFALDRIKALAPQHPEWKDNEPFASLLKGDVKGALAGGERSMLEIVMATHAGMTAEEFEQIVKDWVATAKHPVTRRPYTEMVYQPMLELLVYLRANGFKTYIVSGGGIEFMRPWTEKVYGIPPEQVIGSSIRTKFELREGKPAIVRLPEIDFINDKAGKPSGIYKFIGRRPIAAFGNSDGDLQMLQWTTAGDGLRFGLIVHHTDAKREWAYDRKSAIGKLDKALDVAKKHDWTVVDMKKDWRVVYPFEKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUS3</accession>
    <name>A0A0M2UUS3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7">30S ribosomal protein S11</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7 9" type="primary">rpsK</name>
        <name evidence="9" type="ORF">BROFUL_01897</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Part of the 30S ribosomal subunit. Interacts with proteins S7 and S18. Binds to IF-3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 8">Belongs to the universal ribosomal protein uS11 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19370">
        <property type="protein sequence ID" value="KKO19370"/>
        <property type="gene ID" value="BROFUL_01897"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2366"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01310">
        <property type="entry name" value="Ribosomal_S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001971">
        <property type="entry name" value="Ribosomal_S11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019981">
        <property type="entry name" value="Ribosomal_S11_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018102">
        <property type="entry name" value="Ribosomal_S11_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036967">
        <property type="entry name" value="Ribosomal_S11_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11759">
        <property type="entry name" value="PTHR11759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00411">
        <property type="entry name" value="Ribosomal_S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002131">
        <property type="entry name" value="Ribosomal_S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03632">
        <property type="entry name" value="uS11_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00054">
        <property type="entry name" value="RIBOSOMAL_S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7 8" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5 7 8" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 7" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00015692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003629"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="126" mass="13467" checksum="1F11BADAFCB6B042" modified="2015-11-11" version="1">MSNGIKKKIRRNVTRAIANIKATFNNTYVTISDVNGETICWASAGTVGFKGSRKSTPFAAQKAASSAADKAQKYGIQEIEIRVKGPGPGRESAITALQAAGLSVKAIEDVTPLPHNGCRPRKKRRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUT0</accession>
    <name>A0A0M2UUT0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01484</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000152">
        <property type="protein sequence ID" value="KKO19798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19798">
        <property type="protein sequence ID" value="KKO19798"/>
        <property type="gene ID" value="BROFUL_01484"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="131" mass="14640" checksum="DB8880753A03C759" modified="2015-11-11" version="1">MILCNFMNKMTLTYLIALGIIAVLSIASYVTLKKDISSQETNAAVINLTSKQRFLTQNIAIHSLCLASTNDSAETEALRQYRLTTIHTIETVHKGSLAETHPFICPEGNPRRSTLCILNHRCSYTQEARNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUV7</accession>
    <name>A0A0M2UUV7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HicB-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01466</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000150">
        <property type="protein sequence ID" value="KKO19823.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19823">
        <property type="protein sequence ID" value="KKO19823"/>
        <property type="gene ID" value="BROFUL_01466"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1811"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031807">
        <property type="entry name" value="HicB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035069">
        <property type="entry name" value="TTHA1013/TTHA0281-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15919">
        <property type="entry name" value="HicB_lk_antitox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143100">
        <property type="entry name" value="SSF143100"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HicB-like" evidence="1">
        <location>
            <begin position="6"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF15919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19823.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="77" mass="8566" checksum="7591901E5B98EBAD" modified="2015-11-11" version="1">MKLLNYRILLRKEPGGGYTVIVPSLPGCVTYGDTIEGAIKMAKEAIELYIESLKIHGEEIPTEEDTLEYTLTIQSHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV24</accession>
    <name>A0A0M2UV24_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative nickel-responsive regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">nikR</name>
        <name evidence="1" type="ORF">BROFUL_02943</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000278">
        <property type="protein sequence ID" value="KKO18344.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18344">
        <property type="protein sequence ID" value="KKO18344"/>
        <property type="gene ID" value="BROFUL_02943"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013321">
        <property type="entry name" value="Arc_rbn_hlx_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010985">
        <property type="entry name" value="Ribbon_hlx_hlx"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47598">
        <property type="entry name" value="SSF47598"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18344.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="80" mass="9477" checksum="AB4E234F6038CC78" modified="2015-11-11" version="1">MRKTKIAITLDEQFIEDIDRLVSEHVFQNRSQAIQEAVEEKLKRLKRTRLAKECAKLDIPFEKAMAEEGLTEDLNQWPEY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV26</accession>
    <name>A0A0M2UV26_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Ferredoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02434</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 5">Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000232">
        <property type="protein sequence ID" value="KKO18841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18841">
        <property type="protein sequence ID" value="KKO18841"/>
        <property type="gene ID" value="BROFUL_02434"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001080">
        <property type="entry name" value="3Fe4S_ferredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00352">
        <property type="entry name" value="3FE4SFRDOXIN"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0249">Electron transport</keyword>
    <keyword evidence="3 5" id="KW-0408">Iron</keyword>
    <keyword evidence="4 5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="6">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU368020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="62" mass="6693" checksum="A3CC710DA9160481" modified="2015-11-11" version="1">MRAKVDPDICTGCELCTQTCPEVFYMKGDVAEAKNADVPAGSEDLCRQAAEECPVEAIIIQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV64</accession>
    <name>A0A0M2UV64_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">YdcE protein, chain A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01340</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000139">
        <property type="protein sequence ID" value="KKO19948.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19948">
        <property type="protein sequence ID" value="KKO19948"/>
        <property type="gene ID" value="BROFUL_01340"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003477">
        <property type="entry name" value="PemK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011067">
        <property type="entry name" value="Plasmid_toxin/cell-grow_inhib"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33988">
        <property type="entry name" value="PTHR33988"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02452">
        <property type="entry name" value="PemK_toxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF033490">
        <property type="entry name" value="MazF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19948.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="79" mass="9156" checksum="7F41835AFB5E5BA4" modified="2015-11-11" version="1">MKRGDIYLVDFEPSVGAEIKKQRPALIISCNEANKHLKTVMAIPFSSKVERVFPFEVFVKKNDSRLDYDSKLKIPQMRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVB7</accession>
    <name>A0A0M2UVB7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01520</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000157">
        <property type="protein sequence ID" value="KKO19762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19762">
        <property type="protein sequence ID" value="KKO19762"/>
        <property type="gene ID" value="BROFUL_01520"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="109" mass="12128" checksum="3371CE44AB174A62" modified="2015-11-11" version="1">MMVAQMAHAVEGAQLATAMIRAEYAMENERIRNLFLTTFSYDVPQKLSALSKMLSSLLADEQMGPDRKTKIVKQIHSEVEQLNTLSAELHTILKSRSNVIPDEGKAAKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVC5</accession>
    <name>A0A0M2UVC5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01762</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000182">
        <property type="protein sequence ID" value="KKO19535.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19535">
        <property type="protein sequence ID" value="KKO19535"/>
        <property type="gene ID" value="BROFUL_01762"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19535.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="162" mass="18903" checksum="5D57BF72DAB7DEE2" modified="2015-11-11" version="1">MLRPYFFKKLKCYQTAENKAMRRRQTTNIPHTPDKWVDEIAEAYHDAYETKPFGIFVGQKISDKDLFHMTPSICLKFRGIERTKANVDKATEAMLTSYVATEEQTEGIFADQNLAFSFGYLASHYGMDLLTEEEVSEIMIFLEDNRIELQKAIEKKIKKKKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVG3</accession>
    <name>A0A0M2UVG3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Amino_oxidase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01247</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000135">
        <property type="protein sequence ID" value="KKO20048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20048">
        <property type="protein sequence ID" value="KKO20048"/>
        <property type="gene ID" value="BROFUL_01247"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002937">
        <property type="entry name" value="Amino_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01593">
        <property type="entry name" value="Amino_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amino_oxidase" evidence="1">
        <location>
            <begin position="14"/>
            <end position="545"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="564" mass="63473" checksum="3D130B40A18DD9C8" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVQ1</accession>
    <name>A0A0M2UVQ1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_02247</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19066">
        <property type="protein sequence ID" value="KKO19066"/>
        <property type="gene ID" value="BROFUL_02247"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025662">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025943">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00158">
        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01590">
        <property type="entry name" value="HTHFIS"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00675">
        <property type="entry name" value="SIGMA54_INTERACT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00676">
        <property type="entry name" value="SIGMA54_INTERACT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="5">
        <location>
            <begin position="150"/>
            <end position="379"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="468" mass="53246" checksum="53F41BFEA2D38BF8" modified="2015-11-11" version="1">MSPYHALFVDLESDTNPHDNCRQLFRLVENIFSENKLSSQTITFFPPWPVSAIPDLIFMRSSMKISSLDLVHHLRKHWNQAVIYGFFCAKNFDSAEIFQSLASGMDDFFLCTITQKEFLLRLQRLIVWTKQAVNTAPLETVKRIFNHKQLIGKSPSFLNVIEKIPHLALSDAPVLVLGETGTGKELFTRAIHYNSQRHGRPFIPVNCGALPDQLFESEVFGHVKGAFTDASSEKKGLIAEAEGGTIFLDEVDTLSPSAQIKLLRFIQEFEYRPLGSSKSKVADVRLIAATNADLREKVKTKTFREDLYYRLNILKLHIPPLRERMEDIPLLVDFFLEHYALQYRRVKPRISPSAMQKLLAYSWPGNVRELEGVIQQSMVLCLATILQPDNINLSLPLQKDASGDHTFQGAKKQIVVQFERGYLVDLLAKQQGNITKAAKVAGLDRRAFQRLIKKYGIERNTFSVKNVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVS4</accession>
    <name>A0A0M2UVS4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AraC_binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02200</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000220">
        <property type="protein sequence ID" value="KKO19086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19086">
        <property type="protein sequence ID" value="KKO19086"/>
        <property type="gene ID" value="BROFUL_02200"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003313">
        <property type="entry name" value="AraC-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02311">
        <property type="entry name" value="AraC_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AraC_binding" evidence="1">
        <location>
            <begin position="39"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02311"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="209" mass="24173" checksum="B2A4EC011D24DFCE" modified="2015-11-11" version="1">MNNVIVNNSKTQIIRDGFTQSSLSLGKKIILLFNVLKDSNLPLHSHSHIQFGYNFYGAYDFFIDGKKYNAKPSQSYLINSKISHSAIATSDYYSLDFKYLGNPLEKVCQFDVFEKEISNEECKFQKIHLENTIILKYTPIKEIVQLKLTSGDKERFFVVVKKRCQIKINVSSAELLPMNIYEINSSNHDINFELFKEGDEIFLFIIKST</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVV8</accession>
    <name>A0A0M2UVV8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">FGE-sulfatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02671</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000245">
        <property type="protein sequence ID" value="KKO18634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18634">
        <property type="protein sequence ID" value="KKO18634"/>
        <property type="gene ID" value="BROFUL_02671"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016187">
        <property type="entry name" value="CTDL_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005532">
        <property type="entry name" value="SUMF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042095">
        <property type="entry name" value="SUMF_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03781">
        <property type="entry name" value="FGE-sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56436">
        <property type="entry name" value="SSF56436"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FGE-sulfatase" evidence="1">
        <location>
            <begin position="3"/>
            <end position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="233" mass="26348" checksum="C7D8A9087FC49219" modified="2015-11-11" version="1">MEMEFVSIPAGEFLMGSHKSDKEKDKDETPQHKVIIKNGFSMQKTEVTQGQWVEIMGSNPSYFKECGKDCPVESVSWNDVQEFIRRLNKKTGKNYRLPTEAEWEYAARAGSMTRYPCGDDAGCLDAIAWYGSNSGGTPQPVGKKLPNAWGLYDMIGNVWEWCQDWYGDKYYKKSSSTDPKGPETGSYRVIRGGGWHYSAWLCRSSNRNSNDPSYVGNFLGFRLVLPQVISEGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW58</accession>
    <name>A0A0M2UW58_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Phospho-2-dehydro-3-deoxyheptonate aldolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00977</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000117">
        <property type="protein sequence ID" value="KKO20303.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20303">
        <property type="protein sequence ID" value="KKO20303"/>
        <property type="gene ID" value="BROFUL_00977"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1225"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016832">
        <property type="term" value="F:aldehyde-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006218">
        <property type="entry name" value="DAHP1/KDSA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041071">
        <property type="entry name" value="DAHP_snth_FXD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006268">
        <property type="entry name" value="DAHP_syn_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18152">
        <property type="entry name" value="DAHP_snth_FXD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00793">
        <property type="entry name" value="DAHP_synth_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01361">
        <property type="entry name" value="DAHP_synth_Bsub"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAHP_snth_FXD" evidence="2">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="DAHP_synth_1" evidence="1">
        <location>
            <begin position="91"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20303.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="338" mass="36867" checksum="27A1AC85FEEFD9A6" modified="2015-11-11" version="1">MIIVMKAESTKKDIDHVLERIEKAGLKGVVLQGTNRNVIAIIGDERVLPADFWDIMPGVEKSVPILAPYKLASKEGKDFRTIIHLMNGKKIGGEEVAVIAGPCAIESKEQIVEIAKRVRDAGGTALRGGAFKPRSNPYTFQGLREEGLVHLAHAREASGLPIVTEVLTPEHVTLVSKYSDILQIGTRNMQNFLLLRAVGEAGKPVILKRGMSATVEEFLLAAEYILAQNNPNVILCERGIRTFETHTRFTLSLSIVPQLREMTHLPIIVDPSHGTGKRSLVNPMSKGSVAVGADGLLIETHPEPEKSFVDGPQTITLEAFEALMEELKPVAEAVGRKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW72</accession>
    <name>A0A0M2UW72_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02529</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18749">
        <property type="protein sequence ID" value="KKO18749"/>
        <property type="gene ID" value="BROFUL_02529"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="317" mass="37244" checksum="D2C8478DBD97018B" modified="2015-11-11" version="1">MNLEFDPSLIEEVIFGELKAREEKGDFTLTLEYHSSIDPVYENFPLDERPSQFKKIEWDFFKKLEYPKLIKEVFSEFPELEEKSAGGVIAKAVNNFDEGSYLTKGMNQESGQKRIVVKLLPERFLDIPYLKKLVRHELTHASDMLSDSYGYRDERLGGNPMEESIVKERYCVFWDIYVDSRLIRKGKETLSDKDIRYNEFSALYKKIPDEVKMAIFDVLWQDEKLTHEKILRMARDVNEVIKISDGLPIKHTLKKKKTILPGTQCPLCQFRTYQWMEGIEQDEYLVNEIKKDFPDWEPEDGVCGQCAEAYKVRKTVC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW99</accession>
    <name>A0A0M2UW99_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Formate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01177</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000126">
        <property type="protein sequence ID" value="KKO20102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20102">
        <property type="protein sequence ID" value="KKO20102"/>
        <property type="gene ID" value="BROFUL_01177"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1456"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043546">
        <property type="term" value="F:molybdopterin cofactor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006657">
        <property type="entry name" value="MoPterin_dinucl-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006656">
        <property type="entry name" value="Mopterin_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006655">
        <property type="entry name" value="Mopterin_OxRdtase_prok_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00384">
        <property type="entry name" value="Molybdopterin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01568">
        <property type="entry name" value="Molydop_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="SSF50692"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00490">
        <property type="entry name" value="MOLYBDOPTERIN_PROK_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00932">
        <property type="entry name" value="MOLYBDOPTERIN_PROK_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Molybdopterin" evidence="2">
        <location>
            <begin position="7"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="domain" description="Molydop_binding" evidence="3">
        <location>
            <begin position="419"/>
            <end position="524"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01568"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="531" mass="59230" checksum="00BA564DBE982CAA" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWC7</accession>
    <name>A0A0M2UWC7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Deoxyguanosinetriphosphate triphosphohydrolase-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02027</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the dGTPase family. Type 2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000206">
        <property type="protein sequence ID" value="KKO19271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19271">
        <property type="protein sequence ID" value="KKO19271"/>
        <property type="gene ID" value="BROFUL_02027"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2528"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016793">
        <property type="term" value="F:triphosphoric monoester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01212">
        <property type="entry name" value="dGTPase_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006261">
        <property type="entry name" value="dNTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023023">
        <property type="entry name" value="dNTPase_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026875">
        <property type="entry name" value="PHydrolase_assoc_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01966">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13286">
        <property type="entry name" value="HD_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01353">
        <property type="entry name" value="dGTP_triPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51831">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HD" evidence="2">
        <location>
            <begin position="75"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19271.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="384" mass="45125" checksum="3A29DEDFA0C270FE" modified="2015-11-11" version="1">MLTRKEIELREDRELAPYAMKSKDSRGRKYPEEEHPYRSVYQRDRDRIIHSTAFRRLEYKTQVFVNHEGDYYRTRLTHTMEVSQIARSIARVLNLNEDIAEAISLAHDLGHTPFGHSGEDALKKLMEGHGGFEHNLHGLRVVDILERKYPDFPGLNLSWELKESIVKHKSPYNNVSVATEYRVNEQPLLEAQIVDKADSIAYDNHDLDDSLKAGIITDDDLQVVDLWRETQKKVKQKYAICDRNIVIAQTIKTLINLEVTDLIEHTMFRIKQEGIDTIRDVRAYPGLIVSFSPLLSEQKKKLQEFLFKHVYQHYRVARMADKAKRFLEELFIAFIKNPKQLPVEYQKWIEEAGLYQAVCDYIAGMTDRFAQDEYKKLFYPYERV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWD3</accession>
    <name>A0A0M2UWD3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Threonine--tRNA ligase</fullName>
            <ecNumber evidence="9">6.1.1.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Threonyl-tRNA synthetase</fullName>
            <shortName evidence="9">ThrRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9 12" type="primary">thrS</name>
        <name evidence="12" type="ORF">BROFUL_01403</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>ATP + L-threonine + tRNA(Thr) = AMP + diphosphate + H(+) + L-threonyl-tRNA(Thr)</text>
            <dbReference type="Rhea" id="RHEA:24624"/>
            <dbReference type="Rhea" id="RHEA-COMP:9670"/>
            <dbReference type="Rhea" id="RHEA-COMP:9704"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57926"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78534"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="9">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.3" evidence="9"/>
    <dbReference type="EMBL" id="LAQJ01000145">
        <property type="protein sequence ID" value="KKO19890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19890">
        <property type="protein sequence ID" value="KKO19890"/>
        <property type="gene ID" value="BROFUL_01403"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1729"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004829">
        <property type="term" value="F:threonine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006435">
        <property type="term" value="P:threonyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00771">
        <property type="entry name" value="ThrRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.800">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00184">
        <property type="entry name" value="Thr_tRNA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002314">
        <property type="entry name" value="aa-tRNA-synt_IIb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004154">
        <property type="entry name" value="Anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036621">
        <property type="entry name" value="Anticodon-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004095">
        <property type="entry name" value="TGS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012676">
        <property type="entry name" value="TGS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002320">
        <property type="entry name" value="Thr-tRNA-ligase_IIa"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018163">
        <property type="entry name" value="Thr/Ala-tRNA-synth_IIc_edit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033728">
        <property type="entry name" value="ThrRS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012947">
        <property type="entry name" value="tRNA_SAD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11451">
        <property type="entry name" value="PTHR11451"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03129">
        <property type="entry name" value="HGTP_anticodon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02824">
        <property type="entry name" value="TGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00587">
        <property type="entry name" value="tRNA-synt_2b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07973">
        <property type="entry name" value="tRNA_SAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01047">
        <property type="entry name" value="TRNASYNTHTHR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00863">
        <property type="entry name" value="tRNA_SAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55186">
        <property type="entry name" value="SSF55186"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81271">
        <property type="entry name" value="SSF81271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00418">
        <property type="entry name" value="thrS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51880">
        <property type="entry name" value="TGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9 12" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="5 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 9 12" id="KW-0436">Ligase</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 9" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 9" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 9" id="KW-0820">tRNA-binding</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="TGS" evidence="11">
        <location>
            <begin position="1"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="domain" description="AA_TRNA_LIGASE_II" evidence="10">
        <location>
            <begin position="265"/>
            <end position="538"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="334"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="385"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="515"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00184"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO19890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="640" mass="73448" checksum="05C28423ECA5A44B" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWH9</accession>
    <name>A0A0M2UWH9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01327</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000139">
        <property type="protein sequence ID" value="KKO19935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19935">
        <property type="protein sequence ID" value="KKO19935"/>
        <property type="gene ID" value="BROFUL_01327"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="217" mass="23784" checksum="359DD6FBAA5F3E89" modified="2015-11-11" version="1">MKYLIFFCIFIVPIHLLPAAELLKNGDFETADTTGWKYWETYPWDGDGAPVELPAHLSIALPGNIGVPVPPATSGSLALTQQVGFGGTARGGLYQEVKVIVNTPYVLTGHMSFYGDDIGDISIIGILDGSWNPTLAYTSLNKYCIGGNVVSPWVELSLIVIPSRDVITVFTETRQDWMHGNVAGWYDDLSLKPVPEPAKLFISHNPKANSVYKDKQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWJ9</accession>
    <name>A0A0M2UWJ9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">VanZ domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00863</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000105">
        <property type="protein sequence ID" value="KKO20438.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20438">
        <property type="protein sequence ID" value="KKO20438"/>
        <property type="gene ID" value="BROFUL_00863"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006976">
        <property type="entry name" value="VanZ-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04892">
        <property type="entry name" value="VanZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="69"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="101"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="VanZ" evidence="2">
        <location>
            <begin position="20"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20438.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="132" mass="14976" checksum="A539734D108464CF" modified="2015-11-11" version="1">MNIKIRAYWIYKGIVTIMYASLIYFASSRDTSSVPLPLHYDKAIHFIVFGLLSLMICWTLSSFTFGNHWIVKIIVAIGITSLYGASDEFHQVFTPHRSVSVFDWLADTAGAATAAFLWYGITSKWWVKKATV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWN4</accession>
    <name>A0A0M2UWN4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">50S ribosomal protein L6</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rplF</name>
        <name evidence="7" type="ORF">BROFUL_01908</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 5">This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the universal ribosomal protein uL6 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19381">
        <property type="protein sequence ID" value="KKO19381"/>
        <property type="gene ID" value="BROFUL_01908"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2377"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.930.12">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01365_B">
        <property type="entry name" value="Ribosomal_L6_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000702">
        <property type="entry name" value="Ribosomal_L6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020040">
        <property type="entry name" value="Ribosomal_L6_a/b-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036789">
        <property type="entry name" value="Ribosomal_L6_a/b-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019906">
        <property type="entry name" value="Ribosomal_L6_bac-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11655">
        <property type="entry name" value="PTHR11655"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11655:SF14">
        <property type="entry name" value="PTHR11655:SF14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00347">
        <property type="entry name" value="Ribosomal_L6"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002162">
        <property type="entry name" value="Ribosomal_L6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00059">
        <property type="entry name" value="RIBOSOMALL6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56053">
        <property type="entry name" value="SSF56053"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03654">
        <property type="entry name" value="L6_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1 3 4" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 5" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_L6" evidence="6">
        <location>
            <begin position="11"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="domain" description="Ribosomal_L6" evidence="6">
        <location>
            <begin position="92"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003869"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="187" mass="20438" checksum="570CC1EDC4692518" modified="2015-11-11" version="1">MSRIGKQPIKIPSDVKVSVTDSTVSLEGAKGKMVQAFHPDVHIEFHQNDRQMVIKRISDEKYCKALHGLTRALIANMVFGVTKGFSKKLEIIGLGYNAKVQGKELVLSLGYTHPVHLIIPQGIKVDVTNPTNPAKLTISGSDKQMVGQFSAVIRGKKPPEPYKGMGIKYENEVIRRKAGKAFTSGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWT1</accession>
    <name>A0A0M2UWT1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00745</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000095">
        <property type="protein sequence ID" value="KKO20523.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20523">
        <property type="protein sequence ID" value="KKO20523"/>
        <property type="gene ID" value="BROFUL_00745"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644243" evidence="2">
        <location>
            <begin position="23"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="95"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20523.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="242" mass="27122" checksum="198E2AD6B8A37A10" modified="2015-11-11" version="1">MKQRGSIVMALGFATLVTGCVAASQRSPDIQAVPVGVNDRKIKELERGLSDLNDTTQALGKRVELLSSKTADADSNYTKLLSRLNELDSKIVLMDSSLENVVAETQKTVKDLEREMGEIEKAKTDLQNQLMALQAQRSRLTGKKIEQTKEVKEMLEQGREMLKDASSEIKPENDQKLKTIITNQEKEALQKLLDDALTLYREGNYKAAIGKWEEVLVIEPENLEAKFNIEIANEKVRSTSEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWT5</accession>
    <name>A0A0M2UWT5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01846</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000191">
        <property type="protein sequence ID" value="KKO19431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19431">
        <property type="protein sequence ID" value="KKO19431"/>
        <property type="gene ID" value="BROFUL_01846"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="74" mass="8637" checksum="BADAA96CB593FA96" modified="2015-11-11" version="1" fragment="single">MVQRQVLYLGELNDNQRAGWIRTIEAVSGKEPKPRQLALFPDDREAMPIPDGETVRVRLDKIELRHPREWGASW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWX5</accession>
    <name>A0A0M2UWX5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">ATP-grasp domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02293</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO18999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18999">
        <property type="protein sequence ID" value="KKO18999"/>
        <property type="gene ID" value="BROFUL_02293"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2856"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003806">
        <property type="entry name" value="ATP-grasp_PylC-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02655">
        <property type="entry name" value="ATP-grasp_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="2">
        <location>
            <begin position="42"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="308" mass="35437" checksum="7A300D05405B58C9" modified="2015-11-11" version="1">MEFSTQILLTDVANRQRIERHTRLPFADADLAKKGNDKACVMQYARERGIDVPTTYVVSDIEQITMIAKEVAYPILIKPRNSSGSRGIVFVKEREELLTSYLKVHKEYPFPIIQEYIPDGGEVYGVGLLLNFQSEIRASFVYKRLRSHPVRGGPSTLRESVKREDIREIAGSFMKSLRWTGVAHVEFKIDPRDRKPKLLEVNPRFWGSLQLAIESGVDFPFLLYKMAMEGDIEPVMDYNVGVRCRWLIPGDLLHFIKNPERLRLKPSFFDFKTKDDIISLSDPMPVIGRISSVLAFLYDKEMKNLLHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWY5</accession>
    <name>A0A0M2UWY5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Dihydroorotate dehydrogenase</fullName>
            <shortName evidence="6">DHOD</shortName>
            <shortName evidence="6">DHODase</shortName>
            <shortName evidence="6">DHOdehase</shortName>
            <ecNumber evidence="6">1.3.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">pyrD</name>
        <name evidence="8" type="ORF">BROFUL_00919</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the conversion of dihydroorotate to orotate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>(S)-dihydroorotate + A = AH2 + orotate</text>
            <dbReference type="Rhea" id="RHEA:18073"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:30839"/>
            <dbReference type="ChEBI" id="CHEBI:30864"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
        <text evidence="6">Binds 1 FMN per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 6">Pyrimidine metabolism; UMP biosynthesis via de novo pathway.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.3.-.-" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000110">
        <property type="protein sequence ID" value="KKO20362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20362">
        <property type="protein sequence ID" value="KKO20362"/>
        <property type="gene ID" value="BROFUL_00919"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1158"/>
    <dbReference type="UniPathway" id="UPA00070"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004152">
        <property type="term" value="F:dihydroorotate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006207">
        <property type="term" value="P:'de novo' pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd04740">
        <property type="entry name" value="DHOD_1B_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.240.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.26.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00224">
        <property type="entry name" value="DHO_dh_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033888">
        <property type="entry name" value="DHOD_1B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023359">
        <property type="entry name" value="Dihydro_DH_chainA_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005720">
        <property type="entry name" value="Dihydroorotate_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024920">
        <property type="entry name" value="Dihydroorotate_DH_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001295">
        <property type="entry name" value="Dihydroorotate_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037117">
        <property type="entry name" value="Dihydroorotate_DH_ele_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019480">
        <property type="entry name" value="Dihydroorotate_DH_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01180">
        <property type="entry name" value="DHO_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10418">
        <property type="entry name" value="DHODB_Fe-S_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52343">
        <property type="entry name" value="SSF52343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01037">
        <property type="entry name" value="pyrD_sub1_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00911">
        <property type="entry name" value="DHODEHASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00912">
        <property type="entry name" value="DHODEHASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 6" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3 6" id="KW-0288">FMN</keyword>
    <keyword evidence="5 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4 6" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding FR-type" evidence="7">
        <location>
            <begin position="307"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="193"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="6">
        <location>
            <position position="130"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="23"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="47"/>
            <end position="48"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="47"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="166"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="192"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="219"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="245"/>
            <end position="246"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="267"/>
            <end position="268"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="564" mass="60981" checksum="F9089BDBE0F02D8F" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX02</accession>
    <name>A0A0M2UX02_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 7">2-isopropylmalate synthase</fullName>
            <ecNumber evidence="3 7">2.3.3.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Alpha-IPM synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Alpha-isopropylmalate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">leuA</name>
        <name evidence="9" type="ORF">BROFUL_01778</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>3-methyl-2-oxobutanoate + acetyl-CoA + H2O = (2S)-2-isopropylmalate + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:21524"/>
            <dbReference type="ChEBI" id="CHEBI:1178"/>
            <dbReference type="ChEBI" id="CHEBI:11851"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="EC" id="2.3.3.13"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 7">Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 1/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.3.13" evidence="3 7"/>
    <dbReference type="EMBL" id="LAQJ01000186">
        <property type="protein sequence ID" value="KKO19501.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19501">
        <property type="protein sequence ID" value="KKO19501"/>
        <property type="gene ID" value="BROFUL_01778"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2204"/>
    <dbReference type="UniPathway" id="UPA00048">
        <property type="reaction ID" value="UER00070"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003852">
        <property type="term" value="F:2-isopropylmalate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009098">
        <property type="term" value="P:leucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01025">
        <property type="entry name" value="LeuA_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013709">
        <property type="entry name" value="2-isopropylmalate_synth_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002034">
        <property type="entry name" value="AIPM/Hcit_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036230">
        <property type="entry name" value="LeuA_allosteric_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005671">
        <property type="entry name" value="LeuA_bact_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000891">
        <property type="entry name" value="PYR_CT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00682">
        <property type="entry name" value="HMGL-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08502">
        <property type="entry name" value="LeuA_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00917">
        <property type="entry name" value="LeuA_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110921">
        <property type="entry name" value="SSF110921"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00973">
        <property type="entry name" value="leuA_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00815">
        <property type="entry name" value="AIPM_HOMOCIT_SYNTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00816">
        <property type="entry name" value="AIPM_HOMOCIT_SYNTH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50991">
        <property type="entry name" value="PYR_CT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="6 7" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="4 7" id="KW-0432">Leucine biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pyruvate carboxyltransferase" evidence="8">
        <location>
            <begin position="1"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004689"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009396"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012973"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022430"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01025"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19501.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="500" mass="54387" checksum="54197B236C2ED9CC" modified="2015-11-11" version="1">MIFDTTLRDGEQSPGASLDINEKVQIARQLALLNVDVIEAGFPVSSPGDFESVRRIAQEIRGVSVAGLARAVEKDIDNAARALEKADKPRIHVFLATSEIHRKYKLQKAKDEILHLAVKSVKHAIQYVSDVEFSTEDASRTELDFLIQVVEAVIDAGAKTVNIPDTVGYAVPDQYAAIISGLKKNVKNINKAIISVHCHNDLGLAVANSLAAIKAGAQQIECTINGIGERAGNAALEEIVMALKTRQDFYQRSTRVATRELIATSKLVSTLTGLRVQRNKAIVGENAFAHQSGVHQDGVIKERTTYEIMKPEDVGYLKTRLVLGKLSGRNALKTRIKELGYELSESEFERAFEEFKHIADKKKEIFDEDIEAIIGIEKMEVPAIFHLESLTISCGPNAVPTAGVRLKLPDGRLVDNTTTGDGPIDALFKAIDLSTGITGTLQDYNIRAVTSGKDAMGEVHVNIEVEGKTIGGRAVSTDIIEASAKAYLNAINKIAVLKIM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX25</accession>
    <name>A0A0M2UX25_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00666</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000088">
        <property type="protein sequence ID" value="KKO20603.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20603">
        <property type="protein sequence ID" value="KKO20603"/>
        <property type="gene ID" value="BROFUL_00666"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20603.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="31" mass="3479" checksum="AD5BC24C3E4575EB" modified="2015-11-11" version="1" fragment="single">AYSRLFNLLGRTLLFHITIARAFSEAISPLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX28</accession>
    <name>A0A0M2UX28_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_00852</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the SIS family. GutQ/KpsF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000105">
        <property type="protein sequence ID" value="KKO20427.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20427">
        <property type="protein sequence ID" value="KKO20427"/>
        <property type="gene ID" value="BROFUL_00852"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1077"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901135">
        <property type="term" value="P:carbohydrate derivative metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05014">
        <property type="entry name" value="SIS_Kpsf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004800">
        <property type="entry name" value="KdsD/KpsF-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001347">
        <property type="entry name" value="SIS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035474">
        <property type="entry name" value="SIS_Kpsf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01380">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004692">
        <property type="entry name" value="KdsD_KpsF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00393">
        <property type="entry name" value="kpsF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51464">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0129">CBS domain</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="SIS" evidence="7">
        <location>
            <begin position="74"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="6">
        <location>
            <begin position="241"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="6">
        <location>
            <begin position="310"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="115"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="site" description="Catalytically relevant" evidence="4">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <feature type="site" description="Catalytically relevant" evidence="4">
        <location>
            <position position="143"/>
        </location>
    </feature>
    <feature type="site" description="Catalytically relevant" evidence="4">
        <location>
            <position position="184"/>
        </location>
    </feature>
    <feature type="site" description="Catalytically relevant" evidence="4">
        <location>
            <position position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR004692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR004692-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR004692-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20427.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="361" mass="39682" checksum="4FB418F185F74DC1" modified="2015-11-11" version="1">MRSFFSLECCRNDHYNQTACAQKFADFTDVQRNENNQMKENLLSDIDFAKEVLLLESEAIKNLTNRLDQNFQRAVDLIFACRGRVVVTGIGKAGIIGQKISATLASTGTPSYWIHSSEARHGDLGRIVSDDIVLVLSNSGETEVVTLLPFVKQIGAQVLAITGNHKSSLAKHSDVVLDIGKIEEPCHLGLAPSASSTAMLALGDALALTIFKKRNLRKEDYAFYHPGGELGRKLLTVEMVMRKNEENPVADEDTPLLDVLAIMTETAGKPGAVSIVDKQNKLVGFFTDGDLRRHLKNGISFLHCSAKEVMTRSPKVIHAHCLVAEAYKILKDYKIDQIPVVDDSHAPIGIIDVQDLLEVGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX71</accession>
    <name>A0A0M2UX71_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Porphobilinogen deaminase</fullName>
            <shortName evidence="6">PBG</shortName>
            <ecNumber evidence="6">2.5.1.61</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Hydroxymethylbilane synthase</fullName>
            <shortName evidence="6">HMBS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Pre-uroporphyrinogen synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">hemC</name>
        <name evidence="9" type="ORF">BROFUL_00803</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 6">Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>H2O + 4 porphobilinogen = hydroxymethylbilane + 4 NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:13185"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:57845"/>
            <dbReference type="ChEBI" id="CHEBI:58126"/>
            <dbReference type="EC" id="2.5.1.61"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>dipyrromethane</name>
            <dbReference type="ChEBI" id="CHEBI:60342"/>
        </cofactor>
        <text evidence="6">Binds 1 dipyrromethane group covalently.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Monomer.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="6">The porphobilinogen subunits are added to the dipyrromethane group.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the HMBS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.61" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000102">
        <property type="protein sequence ID" value="KKO20472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20472">
        <property type="protein sequence ID" value="KKO20472"/>
        <property type="gene ID" value="BROFUL_00803"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1017"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004418">
        <property type="term" value="F:hydroxymethylbilane synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018160">
        <property type="term" value="P:peptidyl-pyrromethane cofactor linkage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006779">
        <property type="term" value="P:porphyrin-containing compound biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00260">
        <property type="entry name" value="Porphobil_deam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000860">
        <property type="entry name" value="HemC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022419">
        <property type="entry name" value="Porphobilin_deaminase_cofac_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022417">
        <property type="entry name" value="Porphobilin_deaminase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022418">
        <property type="entry name" value="Porphobilinogen_deaminase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036803">
        <property type="entry name" value="Porphobilinogen_deaminase_C_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11557">
        <property type="entry name" value="PTHR11557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01379">
        <property type="entry name" value="Porphobil_deam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03900">
        <property type="entry name" value="Porphobil_deamC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001438">
        <property type="entry name" value="4pyrrol_synth_OHMeBilane_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00151">
        <property type="entry name" value="PORPHBDMNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54782">
        <property type="entry name" value="SSF54782"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00212">
        <property type="entry name" value="hemC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00533">
        <property type="entry name" value="PORPHOBILINOGEN_DEAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Porphobil_deam" evidence="7">
        <location>
            <begin position="8"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="domain" description="Porphobil_deamC" evidence="8">
        <location>
            <begin position="228"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="modified residue" description="S-(dipyrrolylmethanemethyl)cysteine" evidence="6">
        <location>
            <position position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002869"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005638"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00260"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF03900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="318" mass="34839" checksum="1D4F02B84AB2B26D" modified="2015-11-11" version="1">MTKEKQVIVGSRGSKLALIQTNWVISELKKLNPGYEFRIEKISTKGDKITDAPLSRLGGVGLFTKELETALMKGKIDLAVHSAKDVPTELHEGLMIGATPTREDPHDALISNNNANLEKLPDNARIGTSSLRRRAQLLAFRPDFKILDLRGNLDTRLKKLETDDLDAIVVAHAGLRRMGYTGPISQIIPFDIMLPAVGQGSLCIEIRKDDARIQKLVSCLNDAQTRIAIEAERALLAKLQGGCQVPIGAHAQIQKHEVFLEAIICTADGGHTIKDSHHGPSTQAAALGEELAGRMLESGGKRILHEIRQEFQSRVDHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX81</accession>
    <name>A0A0M2UX81_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">8-oxoguanine glycosylase (Hogg1)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">hogg1</name>
        <name evidence="2" type="ORF">BROFUL_01119</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20160">
        <property type="protein sequence ID" value="KKO20160"/>
        <property type="gene ID" value="BROFUL_01119"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1387"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008534">
        <property type="term" value="F:oxidized purine nucleobase lesion DNA N-glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006289">
        <property type="term" value="P:nucleotide-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00056">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1670.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011257">
        <property type="entry name" value="DNA_glycosylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003265">
        <property type="entry name" value="HhH-GPD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023170">
        <property type="entry name" value="HhH_base_excis_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012904">
        <property type="entry name" value="OGG_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07934">
        <property type="entry name" value="OGG_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00478">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48150">
        <property type="entry name" value="SSF48150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ENDO3c" evidence="1">
        <location>
            <begin position="107"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="274" mass="31777" checksum="B0DBB2ECBC5E7D3E" modified="2015-11-11" version="1">MPRILVKNFDLESTLFCGQLFRVSRRNDWYDIVSRDRIFHVRQSANHLEFQGIDREFLSHYFALDEPYSAILQEINRDRHIGKAIRRHYGLRIIRQDPWECLISFLCSSAANIPKIKLNLEILSQSFGEKVTVKGREIHTFPKPGDLNDYEQIVRAKTGFRAKYLKAANDLVSDAFLLSLKNLPYGEAKKALKDIPGIGDKIADCILLFSLGFTEAFPIDTWMKKILQKLYFKNQQVSNQELQNFGAEYFGKYAGYAQQFLYMLARESDGDRIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXD1</accession>
    <name>A0A0M2UXD1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">Alanine dehydrogenase</fullName>
            <ecNumber evidence="2 5">1.4.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_01075</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>H2O + L-alanine + NAD(+) = H(+) + NADH + NH4(+) + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:18405"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="EC" id="1.4.1.1"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the AlaDH/PNT family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.4.1.1" evidence="2 5"/>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20225">
        <property type="protein sequence ID" value="KKO20225"/>
        <property type="gene ID" value="BROFUL_01075"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1340"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000286">
        <property type="term" value="F:alanine dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042853">
        <property type="term" value="P:L-alanine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05305">
        <property type="entry name" value="L-AlaDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008141">
        <property type="entry name" value="Ala_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008143">
        <property type="entry name" value="Ala_DH/PNT_CS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007886">
        <property type="entry name" value="AlaDH/PNT_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007698">
        <property type="entry name" value="AlaDH/PNT_NAD(H)-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42795">
        <property type="entry name" value="PTHR42795"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01262">
        <property type="entry name" value="AlaDh_PNT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05222">
        <property type="entry name" value="AlaDh_PNT_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000183">
        <property type="entry name" value="Alanine_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01002">
        <property type="entry name" value="AlaDh_PNT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01003">
        <property type="entry name" value="AlaDh_PNT_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00518">
        <property type="entry name" value="alaDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00837">
        <property type="entry name" value="ALADH_PNT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 8" id="KW-0520">NAD</keyword>
    <keyword evidence="8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3 5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AlaDh_PNT_N" evidence="10">
        <location>
            <begin position="4"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="domain" description="AlaDh_PNT_C" evidence="9">
        <location>
            <begin position="149"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="6">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="6">
        <location>
            <position position="270"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="15"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="75"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="198"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="203"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="220"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="239"/>
            <end position="240"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="267"/>
            <end position="270"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005689"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR000183"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000183-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000183-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000183-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM01002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM01003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO20225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="367" mass="39707" checksum="9C8C6708FDC26A52" modified="2015-11-11" version="1">MIVGVPKEIKPDEYRVAFIPAGVEEMLKHGHTVLVEKGAGLGSGISDEEYARAGAKLVDKFQEIYNQSQFVMKVKEPLPEEYPFLKEGQIVFTFFHFAASKKLTDTIIKSKIVAIAYETIRDEHGQHPILTPMSEVAGRMSIQEGAKFLENPMHGRGILLGGVPGVAPAEVVIIGGGVVGSNAAKVAAGIGARVTILDINLDRLRYLDDIMPKNVVTLMSNIHNIREKVRDADLLIGAVLIEGSRAPHVVTREMVQTMKPGAVIVDVAIDQGGCVETSKPTTHSNPIYREYDVIHYCVTNIPGAVAYTSTHALTNATTPYAIAIADKGYERAARENPAILRGINMIKGSVANKAVADTFGMSYRAFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXI5</accession>
    <name>A0A0M2UXI5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00478</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000064">
        <property type="protein sequence ID" value="KKO20793.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20793">
        <property type="protein sequence ID" value="KKO20793"/>
        <property type="gene ID" value="BROFUL_00478"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20793.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="212" mass="23756" checksum="17295D1A1FF31FF3" modified="2015-11-11" version="1">MRIISITGTASGVGKTAVVRFLLKNLEDFSALKITTKHEGNCPRHSDCDVCETMQRPYTITTNPLQINQSGKDTALFKSAGARKVVWLQTHSKHLKRGIEEALSHFSKNDSILIEGNSFLHVHDADISILVATPRETKIKRSTRQIVSKIDLAIINVYADDSPDDITKTRERLHQIGCYAPVHIINPLQDNYTPNKVFLTHMKEMIGQPVQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXU2</accession>
    <name>A0A0M2UXU2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01513</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000155">
        <property type="protein sequence ID" value="KKO19786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19786">
        <property type="protein sequence ID" value="KKO19786"/>
        <property type="gene ID" value="BROFUL_01513"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="56" mass="6381" checksum="7EC11C7C49024E0C" modified="2015-11-11" version="1">MKAGMLSRKLRSQGKTIPLSDITIACCAKKHQYQVFTIDNHFHAIQDINNISFFSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXU7</accession>
    <name>A0A0M2UXU7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Site-specific tyrosine recombinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">xerC_1</name>
        <name evidence="6" type="ORF">BROFUL_00351</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000044">
        <property type="protein sequence ID" value="KKO20918.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20918">
        <property type="protein sequence ID" value="KKO20918"/>
        <property type="gene ID" value="BROFUL_00351"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.432"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044068">
        <property type="entry name" value="CB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004107">
        <property type="entry name" value="Integrase_SAM-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02899">
        <property type="entry name" value="Phage_int_SAM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13495">
        <property type="entry name" value="Phage_int_SAM_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51900">
        <property type="entry name" value="CB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Core-binding (CB)" evidence="5">
        <location>
            <begin position="7"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="domain" description="Core-binding (CB)" evidence="5">
        <location>
            <begin position="107"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="domain" description="Tyr recombinase" evidence="4">
        <location>
            <begin position="209"/>
            <end position="421"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20918.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="425" mass="49817" checksum="570BD0F897C27440" modified="2015-11-11" version="1">MSFLDTDSGKRLFNQYLKKVNGSSQRVYRSEIQQFFDFKNLKGISDITKEVLHAYQERLSWEHSPKTTKRKFSILNGFFKHLEASGAFRNPIITLKEFKTHTGVKDEDLLVCLDKFLATQNTPNIKKSYENLIKLFFAWINKDLCEITKQDILAYRDYLRENSYRDTTIWNRFISLNRFFKYIERENRKFRNPIVFKELTLIFPKKDKGYYTVLSVSEAQRLLNQPDRKTEIGRRDYAILALMLVYGLRANETAGLRHKHLEHDRVKGQQKVWIVDRKGRFQNRPKTAIILNGKALQAFDAWMDIVKGYGIKITGELPVFLPFIYDRVDHKLVIRRDRLPGALSVKSVENIVKRYIKKAKIERDGEVLSAHSLRHTAFTMLAHEGVPIQDIQKLAGHQDINTTMIYVHSAQSYDDHPGMRNPLNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXV9</accession>
    <name>A0A0M2UXV9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CRISPR_Cas6 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00342</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000043">
        <property type="protein sequence ID" value="KKO20928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20928">
        <property type="protein sequence ID" value="KKO20928"/>
        <property type="gene ID" value="BROFUL_00342"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019267">
        <property type="entry name" value="CRISPR-assoc_Cas6_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10040">
        <property type="entry name" value="CRISPR_Cas6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CRISPR_Cas6" evidence="1">
        <location>
            <begin position="7"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="139" mass="15818" checksum="A9691FBC4F14B532" modified="2015-11-11" version="1">MPEACTLQFLTRLDLKEKGRYPEPDFSLLFRSLLRRIATLGHLHCGLDFRSLDFGGLSHAAEKIGTVTSKLRREEAVRYSNRQRRRMPFGGLLGEITFAGDLSPFWPFMLLGEWMHVGKKTSFGLGRYFVKTAHGREGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXW5</accession>
    <name>A0A0M2UXW5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00335</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000042">
        <property type="protein sequence ID" value="KKO20933.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20933">
        <property type="protein sequence ID" value="KKO20933"/>
        <property type="gene ID" value="BROFUL_00335"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20933.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="110" mass="12796" checksum="FF98719510CD7700" modified="2015-11-11" version="1">MKLPNNTLIAYEKLIQYLLVPRKRNDKSQWLAKAGYTIENWLLLENDLRNQILSLDVALIENTQYGQMYEIRGKLTGPNGKSLKVCTIWMTENETGDTKFITMYPNKGRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY21</accession>
    <name>A0A0M2UY21_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Antitoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00516</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Antitoxin component of a type II toxin-antitoxin (TA) system.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the phD/YefM antitoxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000071">
        <property type="protein sequence ID" value="KKO20757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20757">
        <property type="protein sequence ID" value="KKO20757"/>
        <property type="gene ID" value="BROFUL_00516"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006442">
        <property type="entry name" value="Antitoxin_Phd/YefM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036165">
        <property type="entry name" value="YefM-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02604">
        <property type="entry name" value="PhdYeFM_antitox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143120">
        <property type="entry name" value="SSF143120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009981"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="94" mass="10935" checksum="F77F4C7AB6FDA135" modified="2015-11-11" version="1">MLKKGVKEIRDNFTRYLKRVKQGEEIVVTERDKPVALLAPIPEVTSFQEKLELAARKSLIRLPQKEGKIPIHKKIKLFGKSLTEIVLEKREKGW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY26</accession>
    <name>A0A0M2UY26_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">DUF3641 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_00806</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000102">
        <property type="protein sequence ID" value="KKO20475.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20475">
        <property type="protein sequence ID" value="KKO20475"/>
        <property type="gene ID" value="BROFUL_00806"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1021"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024521">
        <property type="entry name" value="DUF3641"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026351">
        <property type="entry name" value="rSAM_SeCys"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43728">
        <property type="entry name" value="PTHR43728"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12345">
        <property type="entry name" value="DUF3641"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04167">
        <property type="entry name" value="rSAM_SeCys"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="DUF3641" evidence="6">
        <location>
            <begin position="184"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="325"/>
            <end position="347"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF12345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20475.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="347" mass="38814" checksum="86B5F7C120CBC4DB" modified="2015-11-11" version="1">MPTIHFEDTLRLHDVRLCRETLKTLQINVGKLCNQACAHCHVDAGPGRTEIMAEETADRVISLLAATPSIERIDFTGGAPELNPVFRSMVTRSRSLGRRVTDRCNLTILLVKGQEDLAAFFRDNSVEIIASLPCYSRENVDKQRGKGVFAKSITALRMLNSLGYGLAGSGLRLDLVYNPAGAFLPSSQEGLEKQYRKELQEKFGIEFNHLYTMTNMPIRRWKEYLERAGQMERYRELLISAFNPQTVDSLMCRTLVSVGWDGRLYDCDFNQMLEIPIGGRHKSLWDIESFEEFNHGCIATGAHCFGCTAGAGSSCGGALASKAWSMDESTHPDPNKPEKRKSKARNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY37</accession>
    <name>A0A0M2UY37_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5 7">50S ribosomal protein L16</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5 9" type="primary">rplP</name>
        <name evidence="9" type="ORF">BROFUL_01916</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 7">Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5 7">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the universal ribosomal protein uL16 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19389.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19389">
        <property type="protein sequence ID" value="KKO19389"/>
        <property type="gene ID" value="BROFUL_01916"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2385"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01433">
        <property type="entry name" value="Ribosomal_L16_L10e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1170.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01342">
        <property type="entry name" value="Ribosomal_L16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016180">
        <property type="entry name" value="Ribosomal_L10e/L16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036920">
        <property type="entry name" value="Ribosomal_L10e/L16_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000114">
        <property type="entry name" value="Ribosomal_L16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020798">
        <property type="entry name" value="Ribosomal_L16_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12220">
        <property type="entry name" value="PTHR12220"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00252">
        <property type="entry name" value="Ribosomal_L16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00060">
        <property type="entry name" value="RIBOSOMALL16"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54686">
        <property type="entry name" value="SSF54686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01164">
        <property type="entry name" value="rplP_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00701">
        <property type="entry name" value="RIBOSOMAL_L16_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5 7" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="5 7" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_L16" evidence="8">
        <location>
            <begin position="5"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00029546"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01342"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004414"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00252"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19389.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="139" mass="15836" checksum="D86CF3F1652BC620" modified="2015-11-11" version="1">MRLMPKRVKFRKSQRQKIKGNATRCNTVAFGEFGLQSLEPGWITAQQLEAGRVSASQYLPREGQLTIRVFPHKSVSSKPIETRMGKGKGEPEFWVAVVKPGTMLYELGGVNEEIARQTFNRIAHKMPVKVRLVQRRKTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY62</accession>
    <name>A0A0M2UY62_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Indole-3-glycerol phosphate synthase</fullName>
            <shortName evidence="8">IGPS</shortName>
            <ecNumber evidence="8">4.1.1.48</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">trpC</name>
        <name evidence="10" type="ORF">BROFUL_01876</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate + H(+) = (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate + CO2 + H2O</text>
            <dbReference type="Rhea" id="RHEA:23476"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:58613"/>
            <dbReference type="ChEBI" id="CHEBI:58866"/>
            <dbReference type="EC" id="4.1.1.48"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 4/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the TrpC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.48" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000194">
        <property type="protein sequence ID" value="KKO19414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19414">
        <property type="protein sequence ID" value="KKO19414"/>
        <property type="gene ID" value="BROFUL_01876"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2340"/>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00043"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004425">
        <property type="term" value="F:indole-3-glycerol-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000162">
        <property type="term" value="P:tryptophan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00331">
        <property type="entry name" value="IGPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00134_A">
        <property type="entry name" value="IGPS_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00134_B">
        <property type="entry name" value="IGPS_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045186">
        <property type="entry name" value="Indole-3-glycerol_P_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013798">
        <property type="entry name" value="Indole-3-glycerol_P_synth_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001468">
        <property type="entry name" value="Indole-3-GlycerolPSynthase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22854">
        <property type="entry name" value="PTHR22854"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00218">
        <property type="entry name" value="IGPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="SSF51366"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00614">
        <property type="entry name" value="IGPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="6 8" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="4 8" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="7 8" id="KW-0456">Lyase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="domain" description="IGPS" evidence="9">
        <location>
            <begin position="4"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001633"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004696"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00218"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="260" mass="29007" checksum="D3DFA4CFEABCA67A" modified="2015-11-11" version="1">MTILDTIYHHKIVEVEKKKKHVPLGSLEKRIHKRRHAKSFGSVLQSDTNISIIAEIKKASPSLGVIREDFQPTEIARLYQKGGAAAISVLTDEKYFQGKLSYLTDVKRSVDLPVLRKDFIIDPYQIYEAQSAGADAILLIAALLSKETIQRYLDLAKDLEMDCLVEVHTESELQKVLQTDAAIIGINNRDLATFSVSLETTFRLRSMIPEGKIIVSESGIKSRSEIVQLFNKGINAILVGETLMKSNNIPATLQEFLGKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY76</accession>
    <name>A0A0M2UY76_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01372</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000141">
        <property type="protein sequence ID" value="KKO19921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19921">
        <property type="protein sequence ID" value="KKO19921"/>
        <property type="gene ID" value="BROFUL_01372"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="108"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="domain" description="N-acetyltransferase" evidence="2">
        <location>
            <begin position="2"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="161" mass="18352" checksum="1F0DBF8DCFAEFE0F" modified="2015-11-11" version="1">MIKIRKAKDTDSEDVWNIFHQVVKRGDTFTFDPKSSKENCRSLWMSPPVHTYVAELQNRIRGTYILRKNQPDLGAHVANAAYMVHPETWGQGIGKAMGSHSIKQARKLGFSAIQFNFVVSTNLVAIQLWLKLGFKIVGTVPKAFNHRKLGLIDVYVMHRFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY92</accession>
    <name>A0A0M2UY92_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01328</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000139">
        <property type="protein sequence ID" value="KKO19936.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19936">
        <property type="protein sequence ID" value="KKO19936"/>
        <property type="gene ID" value="BROFUL_01328"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19936.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="474" mass="54582" checksum="819B5F428A538005" modified="2015-11-11" version="1">MNEKPRPFVRMIIACLFFFIAVTLNIFLPRYWHTIPEIVKHLLLVFSAIMCVHIMEYAYLWWEIFGHIRNILKETLQATHQLIDDNRNALEKSLQTTNRLIGSAAIIGLKNVYSSRKDVKGDIYDAIENAEKRVWLLGITASENILLDELLSTLNNKLADGLDVRILLLDALRSSAVFRTLLESTAHEAAKIVNADRTDTHLTDDPYFHQRLYSDFTHVCDRLGSYPRISATVRFYTQTPACWMMIVDNSAHFQPYTFGRSANKHSANLCTGANMPVFKFQMQENGRPFEILEDNFQKLWLTSNLDLFHIEARIANRNRIISDVFHDNSQWFKHVYEALYVQKGAMQFTGDRRKFPRQSWDGVQSLLKVCLPNCQTPIKASLCDYSREGAAIKLDALNHPLKMGDIVTLQNTLPSEPRPENFIIAHFLKRNQFIIRRIINDSQPVIGLQIVSEGERRDEQDHFNGITTASHSLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYE0</accession>
    <name>A0A0M2UYE0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribbon-helix-helix protein, copG family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00175</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000018">
        <property type="protein sequence ID" value="KKO21093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21093">
        <property type="protein sequence ID" value="KKO21093"/>
        <property type="gene ID" value="BROFUL_00175"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013321">
        <property type="entry name" value="Arc_rbn_hlx_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038733">
        <property type="entry name" value="Predicted_DNA_bind_prot_RHH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010985">
        <property type="entry name" value="Ribbon_hlx_hlx"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12651">
        <property type="entry name" value="RHH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47598">
        <property type="entry name" value="SSF47598"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RHH_3" evidence="1">
        <location>
            <begin position="12"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="86" mass="9897" checksum="45F6CF3133F7E20F" modified="2015-11-11" version="1">MSSTVQKAKKAKKITISLPTEILKEVEELEKKLKMPKSEILSKALEKFSRDYKAKKLQKIAKMMAPEYMLDSDLVAMTSLDSEEFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYE1</accession>
    <name>A0A0M2UYE1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Ysc84 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01795</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000187">
        <property type="protein sequence ID" value="KKO19499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19499">
        <property type="protein sequence ID" value="KKO19499"/>
        <property type="gene ID" value="BROFUL_01795"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2229"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007461">
        <property type="entry name" value="Ysc84_actin-binding"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04366">
        <property type="entry name" value="Ysc84"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644166" description="Ysc84 domain-containing protein" evidence="1">
        <location>
            <begin position="18"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="domain" description="Ysc84" evidence="2">
        <location>
            <begin position="98"/>
            <end position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04366"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="185" mass="19506" checksum="8DC417925E8A6B61" modified="2015-11-11" version="1">MKHVRLTVILFALAFTAGICMPEKQAGAASAQEIDLKARMTLDNLYAKSPAAKALGGKATGILVFPSIVKGGFIVGGQYGEGALFKQGRTAGFYNTVQLSYGLQAGGQKYGYVLFFMNEPAMAWLDKTDGWELGVGPTIVVVEIGAAGAMTTTTGHSQIYAFFVNQKGLMAGLGLQGTKVTKINK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYG2</accession>
    <name>A0A0M2UYG2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00646</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000087">
        <property type="protein sequence ID" value="KKO20610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20610">
        <property type="protein sequence ID" value="KKO20610"/>
        <property type="gene ID" value="BROFUL_00646"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="60" mass="6955" checksum="8391C554384E2D1B" modified="2015-11-11" version="1">MIGGFAPLNPPYQPKQITHHTVSKNPIHFFRLFNKSKVSKAIWFVVPPDIMKKSPLYQYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYP7</accession>
    <name>A0A0M2UYP7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00551</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000077">
        <property type="protein sequence ID" value="KKO20715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20715">
        <property type="protein sequence ID" value="KKO20715"/>
        <property type="gene ID" value="BROFUL_00551"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.691"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013976">
        <property type="entry name" value="HDOD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08668">
        <property type="entry name" value="HDOD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51833">
        <property type="entry name" value="HDOD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HDOD" evidence="3">
        <location>
            <begin position="16"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="2">
        <location>
            <begin position="373"/>
            <end position="508"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="297"/>
            <end position="345"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="517" mass="57540" checksum="D7399B230E278A1E" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYR3</accession>
    <name>A0A0M2UYR3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00023</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000006">
        <property type="protein sequence ID" value="KKO21228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21228">
        <property type="protein sequence ID" value="KKO21228"/>
        <property type="gene ID" value="BROFUL_00023"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="96"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="128"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="157"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="184"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="209"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="254"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="302"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="335"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="362"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="388"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="457"/>
            <end position="478"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="485"/>
            <end position="503"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="547" mass="62549" checksum="032FD588E08E7525" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYT9</accession>
    <name>A0A0M2UYT9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00287</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000033">
        <property type="protein sequence ID" value="KKO20987.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20987">
        <property type="protein sequence ID" value="KKO20987"/>
        <property type="gene ID" value="BROFUL_00287"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="17"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20987.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="78" mass="9294" checksum="AD8820247BAA5356" modified="2015-11-11" version="1">MSNMEFRIMKFSYPSTFIIPCSLLAIFLYGSLWLCMITFLIHKKYFYRKCKNVSLKTLRSGNYPELVTYPEAYARESQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYU1</accession>
    <name>A0A0M2UYU1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00341</name>
        <name evidence="4" type="ORF">BROFUL_00492</name>
        <name evidence="3" type="ORF">BROFUL_01101</name>
    </gene>
    <organism evidence="4 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2015-03" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Murphy D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20250.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LAQJ01000066">
        <property type="protein sequence ID" value="KKO20790.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LAQJ01000042">
        <property type="protein sequence ID" value="KKO20939.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20250">
        <property type="protein sequence ID" value="KKO20250"/>
        <property type="gene ID" value="BROFUL_01101"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20790">
        <property type="protein sequence ID" value="KKO20790"/>
        <property type="gene ID" value="BROFUL_00492"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20939">
        <property type="protein sequence ID" value="KKO20939"/>
        <property type="gene ID" value="BROFUL_00341"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038717">
        <property type="entry name" value="Tc1-like_DDE_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13358">
        <property type="entry name" value="DDE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0814">Transposable element</keyword>
    <feature type="domain" description="DDE_3" evidence="2">
        <location>
            <begin position="4"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20250.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20790.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20939.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="123" mass="14472" checksum="02649C1030ED2710" modified="2015-11-11" version="1" fragment="single">VQFIGHLVKKVYVRALKIHLVLDNLNTHFRSSFEEILGVEEATQMLERVEFHYTPKHASWLNMAEIEIGIMDRQCTGCRIPNEQTLRSEVAAWTDRRNQAKSTIDWKFTRQDADQKLSRHYVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYW6</accession>
    <name>A0A0M2UYW6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01632</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000170">
        <property type="protein sequence ID" value="KKO19654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19654">
        <property type="protein sequence ID" value="KKO19654"/>
        <property type="gene ID" value="BROFUL_01632"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2013"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.450.710">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008869">
        <property type="entry name" value="MlaC/ttg2D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042245">
        <property type="entry name" value="Tgt2/MlaC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36573">
        <property type="entry name" value="PTHR36573"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05494">
        <property type="entry name" value="MlaC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004649">
        <property type="entry name" value="MlaC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644284" evidence="1">
        <location>
            <begin position="27"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="205" mass="23622" checksum="F44A88762ABD8128" modified="2015-11-11" version="1">MKLRKTISTICYGVMLLITMSPVVRAAETPGTLVMETIDRGLVVLKDPSLKGREKSDERRQRLWKEISPIFNFEEMSKRALGQHWKKRSPEEKKEFVELFTNILKDAYIGKTDTYSGEKIVFVKEKQDEKDYASVQTKIITNTGAVVLVEYRMLSNAGKWKIYDVIIEGVSLVNNYRSQFSNILMKSPYEELVQKIKGKTGKEKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ23</accession>
    <name>A0A0M2UZ23_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Deoxyribonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00197</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000024">
        <property type="protein sequence ID" value="KKO21072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21072">
        <property type="protein sequence ID" value="KKO21072"/>
        <property type="gene ID" value="BROFUL_00197"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.242"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006304">
        <property type="term" value="P:DNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013670">
        <property type="entry name" value="EcoEI_R_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08463">
        <property type="entry name" value="EcoEI_R_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="EcoEI_R_C" evidence="1">
        <location>
            <begin position="197"/>
            <end position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08463"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="354" mass="40630" checksum="E175943AEE9450FD" modified="2015-11-11" version="1">MRFRSDTMYVMRITGDDEQAKREVDNFINPEERYPVIATTSKLMTTGVDAQTCKLIVLDSNIRSMTEFKQIIGRGTRINEEYGKTFFAIMDFRNVTDLFADPAFDGDPVMVREVTGEDELTDQDIHPEEDQEIIDPETGRPVDFEEETPDEYPPPDIIQGGEIVSEPRQKIYVAGVDVSVLNERVQHLDANGNLITESLKDYTKKGILREFRSLDDFLTRWNGAHKKKAVIEELESQGIIPENLMSGVKKDLDVFDLICHIAWDMPALTRRERAENVKKRNYFMKYGEKARKVIDVLLDKYADEGIENIEDLAILRIEPFSQIGTPTEIVQIFGGREQYLHVIEELEHALYTAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZA0</accession>
    <name>A0A0M2UZA0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01485</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000152">
        <property type="protein sequence ID" value="KKO19799.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19799">
        <property type="protein sequence ID" value="KKO19799"/>
        <property type="gene ID" value="BROFUL_01485"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.600">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1610">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010621">
        <property type="entry name" value="DUF1214"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037049">
        <property type="entry name" value="DUF1214_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010679">
        <property type="entry name" value="DUF1254"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037050">
        <property type="entry name" value="DUF1254_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06742">
        <property type="entry name" value="DUF1214"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06863">
        <property type="entry name" value="DUF1254"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644116" evidence="1">
        <location>
            <begin position="29"/>
            <end position="485"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1254" evidence="3">
        <location>
            <begin position="109"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1214" evidence="2">
        <location>
            <begin position="359"/>
            <end position="468"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF06742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF06863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19799.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="485" mass="54873" checksum="73AF909D2D333927" modified="2015-11-11" version="1">MNRTFKKAVVTALFAFFSTSLTTPSSSAQVLQEQEKDTSVLSREQLQETEAFHVGVLAYLWGYPLVMNHNHRLAMSAVEKPLPSGIYAPLNALNPSRRLLGPEWKARFASHEVIFAQVWFDLLEEPIVVEIPDDHGGRYFSMTFYDYRGDLIRAIGTRSTEGKGGTYLLVGPHFRGETFPTLNVIHSPTRFVYGQGRIVVKKEDQTEIATVVNIMRQYYSVIPYSRWLDPSLPPKPYQASERLNPGLIPQDLQFFHILGEAMKIVPPREEEQSLYALFKTIGLSEHGFDYGTLGDHTKAGLKRAIPEARVMMVSRAQSLFSYTGGWFYPPLTTGWSGLRYLNRAAMCYAFDPFAGLAVEQLCPRTNVDAQGEKLDGAKKKYRLHFKEGLPPVTGEWSLTLYDKNGIMFGNPANRYSISSITSGLEYQKDGSLTILIQAEEPTDPKEKRNWLPAPKGEFWLMVHLWQPNDKVLKGKWKLPGVEPVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZE5</accession>
    <name>A0A0M2UZE5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00928</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000112">
        <property type="protein sequence ID" value="KKO20346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20346">
        <property type="protein sequence ID" value="KKO20346"/>
        <property type="gene ID" value="BROFUL_00928"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1169"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013406">
        <property type="entry name" value="CHP02574_addiction_mod"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09720">
        <property type="entry name" value="Unstab_antitox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02574">
        <property type="entry name" value="stabl_TIGR02574"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="73" mass="8612" checksum="F79022EB6D6F81C6" modified="2015-11-11" version="1">MKEITTTDILALSIPERIQLVEDIWDTIANEPEAIELTEEEKKIIDERLEAYHRNSDLGSPWEDVYRRIVTKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZE6</accession>
    <name>A0A0M2UZE6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Hydroxylamine oxidoreductase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">hao_2</name>
        <name evidence="2" type="ORF">BROFUL_00273</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000032">
        <property type="protein sequence ID" value="KKO20990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20990">
        <property type="protein sequence ID" value="KKO20990"/>
        <property type="gene ID" value="BROFUL_00273"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036280">
        <property type="entry name" value="Multihaem_cyt_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48695">
        <property type="entry name" value="SSF48695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20990.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="536" mass="60802" checksum="E7A4CBCAA43347E3" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZG4</accession>
    <name>A0A0M2UZG4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_01397</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000145">
        <property type="protein sequence ID" value="KKO19884.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19884">
        <property type="protein sequence ID" value="KKO19884"/>
        <property type="gene ID" value="BROFUL_01397"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="235"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="9">
        <location>
            <begin position="256"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="8">
        <location>
            <begin position="362"/>
            <end position="581"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="303"/>
            <end position="355"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19884.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="585" mass="66367" checksum="672A1E9FD0526B05" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZH3</accession>
    <name>A0A0M2UZH3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Phosphoribosyl-AMP cyclohydrolase</fullName>
            <ecNumber evidence="3">3.5.4.19</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_00259</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>1-(5-phospho-beta-D-ribosyl)-5'-AMP + H2O = 1-(5-phospho-beta-D-ribosyl)-5-[(5-phospho-beta-D-ribosylamino)methylideneamino]imidazole-4-carboxamide</text>
            <dbReference type="Rhea" id="RHEA:20049"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:58435"/>
            <dbReference type="ChEBI" id="CHEBI:59457"/>
            <dbReference type="EC" id="3.5.4.19"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 3/9.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.19" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000031">
        <property type="protein sequence ID" value="KKO21010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21010">
        <property type="protein sequence ID" value="KKO21010"/>
        <property type="gene ID" value="BROFUL_00259"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00008"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004635">
        <property type="term" value="F:phosphoribosyl-AMP cyclohydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.810">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002496">
        <property type="entry name" value="PRib_AMP_CycHydrolase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038019">
        <property type="entry name" value="PRib_AMP_CycHydrolase_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01502">
        <property type="entry name" value="PRA-CH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141734">
        <property type="entry name" value="SSF141734"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PRA-CH" evidence="7">
        <location>
            <begin position="30"/>
            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012721"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO21010.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="127" mass="14527" checksum="49FE77A13ECE172E" modified="2015-11-11" version="1">MQLLEKLHFNEKGLIPSVIVDVCDGKVLTLCYMNKDAVEKTIETGKVHVFRRSQNRLMIKGETSGHIQVVKKVFFDCEGNSLVFAVEQHVAACHAGYKTCFYREYIPGTDSIQIAEKKLFDPDRVYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V039</accession>
    <name>A0A0M2V039_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01184</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000126">
        <property type="protein sequence ID" value="KKO20109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20109">
        <property type="protein sequence ID" value="KKO20109"/>
        <property type="gene ID" value="BROFUL_01184"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1463"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="246" mass="29056" checksum="4E5A2F01A2276F04" modified="2015-11-11" version="1">MKRLHWQLYLGLSLVTISAFLYFIHYEIFQDAHHIFIFLIGDIAFVPIEVLFVTLIIHRLLSEREKRAVMKKLNMVIGAFFSEMGIKLLQYFSHFDRTFDKIRENLVVTNTWSEKEFFDTGKGVKSFDCRMDSQNGNLAELRNFLVEKRDFLLRLLENPNLLEHESFTELLWAVSHLTEELIARADVSTLSNADYAHLSGDIKRAYLALIFEWLEYMRHLKDDYPYLFSFAVRMNPFDPNATPEIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V063</accession>
    <name>A0A0M2V063_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH_33 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00014</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000004">
        <property type="protein sequence ID" value="KKO21250.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21250">
        <property type="protein sequence ID" value="KKO21250"/>
        <property type="gene ID" value="BROFUL_00014"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025959">
        <property type="entry name" value="Winged_HTH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13592">
        <property type="entry name" value="HTH_33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH_33" evidence="1">
        <location>
            <begin position="16"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21250.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="150" mass="17438" checksum="E87B15E6CD737AE6" modified="2015-11-11" version="1">MDLLRQPATDYGFASDLWTGPRVRILIRNKFGIKMHRDYMPRFLRRLGLVRKSPERRALEQDIKEVRRWKRYELPRITRSASQSKGIILYGDESVFKPIPHVGKTWPFPDGKPIVRVSGKKGISVAVTSAVILRMFIKCDFRLIDLQGTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0K7</accession>
    <name>A0A0M2V0K7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Putative nickel insertion protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00557</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the LarC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000077">
        <property type="protein sequence ID" value="KKO20721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20721">
        <property type="protein sequence ID" value="KKO20721"/>
        <property type="gene ID" value="BROFUL_00557"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.698"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016151">
        <property type="term" value="F:nickel cation binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01074">
        <property type="entry name" value="LarC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002822">
        <property type="entry name" value="Ni_insertion"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36566">
        <property type="entry name" value="PTHR36566"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01969">
        <property type="entry name" value="DUF111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00299">
        <property type="entry name" value="TIGR00299"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="1 2" id="KW-0533">Nickel</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022596"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01074"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="364" mass="39877" checksum="1979D59748468C26" modified="2015-11-11" version="1">MKIAYFDCFSGISGDMTLGAFVDAGLDINVLQEQLARLHIHGYALSAEKVKRAGISGTKVHVTISSPHTSASAPHHDHRHHAHLRLSDIRAIIEKSTLHHTVKDDSIKIFQRLAMVEAKVHNSTVEEVHFHEVGAIDSIIDIVGSVIAIRHLGIEKIYFSPVPTGYGYTTCEHGSFPVPPPATAELLKNQLLKSVNIEKELTTPTGAAIITTLGEGLRTNPEMKVIQIGYGAGSNDNPNIPNLLRVFIGETMCQESDEMWIVETNIDNMTGEILGYVMDKLFDAGAADAYFTPIQMKKGRPGTIVSAIVSELHLPSVESVLFNETTTFGVRKYKVLRKILAREMTEFDSSLGKIKVKIGSLTTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0Q9</accession>
    <name>A0A0M2V0Q9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter permease component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_00941</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000116">
        <property type="protein sequence ID" value="KKO20309.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20309">
        <property type="protein sequence ID" value="KKO20309"/>
        <property type="gene ID" value="BROFUL_00941"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1188"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003838">
        <property type="entry name" value="ABC3_permease_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02687">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="78"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="123"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="168"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="domain" description="FtsX" evidence="7">
        <location>
            <begin position="108"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20309.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="202" mass="22361" checksum="335A28962D941AD7" modified="2015-11-11" version="1">MVLMPYTTVQRKIMGVTHIGYVLASTITAESRFEAMEQITSLLRQRHRLRPHEENDFTVISQVEFASTVMETSHTMGILLGSIALVSLFVGGIGIMNIMLVSTTERTREIGIRMAVGAKEKDILFQFLIESTVLSSLGGLIGIIFGIFTSKLVSYYGGWPSLVSPPSIAVAFLFSNVVGIFFGYYPARKASRLNPIEALRYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0U6</accession>
    <name>A0A0M2V0U6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Histidinol-phosphate aminotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00503</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 2">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000069">
        <property type="protein sequence ID" value="KKO20776.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20776">
        <property type="protein sequence ID" value="KKO20776"/>
        <property type="gene ID" value="BROFUL_00503"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.632"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001917">
        <property type="entry name" value="Aminotrans_II_pyridoxalP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00599">
        <property type="entry name" value="AA_TRANSFER_CLASS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="3">
        <location>
            <begin position="3"/>
            <end position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003693"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20776.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="281" mass="31412" checksum="0456BFA7B2C2DD8C" modified="2015-11-11" version="1">MAGNGSDDLLSIIIRSFAGQEDKVVFPYPSYMLYKTLAELQDSMACDVDFTEGYSLPENFLVKGAKVTFLANPNSPSGTMIPSQEISRIAAQIDGVLVIDEAYADFAEDNCLSLVGQHRNILILRTLSKSYSLAGIRLGFCIAQEHLIQGMMKVKDSYNVDRLSIAAVVAALDDQKSMKAHVEKIKETRLYLTKSLQEMGFFVYPSQTNFVLARCMKGVSAHTLYQALKSRKILVRYFNLRRLDDCLRITIGTREEIDILIQHLKELITTTQSKAMTACCP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V112</accession>
    <name>A0A0M2V112_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">tRNA modification GTPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00865</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000106">
        <property type="protein sequence ID" value="KKO20394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20394">
        <property type="protein sequence ID" value="KKO20394"/>
        <property type="gene ID" value="BROFUL_00865"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1093"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04164">
        <property type="entry name" value="trmE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.430">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031168">
        <property type="entry name" value="G_TrmE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018948">
        <property type="entry name" value="GTP-bd_TrmE_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027368">
        <property type="entry name" value="MnmE_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027266">
        <property type="entry name" value="TrmE/GcvT_dom1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10396">
        <property type="entry name" value="TrmE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TrmE_N" evidence="3">
        <location>
            <begin position="15"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="G" evidence="2">
        <location>
            <begin position="246"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="185"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="188"/>
            <end position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF10396"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="478" mass="52768" checksum="05A8046649895A2E" modified="2015-11-11" version="1">MINEHTSNAFQEQQTMVSLATPLGEGGIGKIVVSGRHALRIINKVFQGKGIADLTEARSHKLYYGYIKDREQKIDEVIVHIIRREDSFTGEDVAEINCHGGIRVLMRMYECVQAAGAEGAPWNSLLARSFEHDRIDVVQKEALQELVQARTRLSAKVLLDQYAGALSGMLKQGLEVLEELKMSGTAGAAHHQSPTPSPNDGKGTGEEMNVLPRKSSVCVTALTNLIRGLLETASFGMALTTPQVLVILGKPNVGKSTLINAILGEERMLVHHEPGTTRDYVSEVISVEGIPFELVDTAGIREADDKLEAMSIEITQEQLRRADKVIAVFDNSRPFDKEDEGILVALHAWLMSKTSGDVPQKAHARAILPVINKCDLPATLDKTRIESVLQQPCCSLSALNKDGFDDLHKRLVQEFDTVYHPMKPVVFNKRQYHLLTKAEVFVEQEKECLSEKKGTVKTMQTIETLNNILMACLNGSTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1K5</accession>
    <name>A0A0M2V1K5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">tRNA modification GTPase MnmE</fullName>
            <ecNumber evidence="6">3.6.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">mnmE</name>
        <name evidence="6" type="synonym">trmE</name>
        <name evidence="11" type="ORF">BROFUL_00243</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </cofactor>
        <text evidence="6">Binds 1 potassium ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer. Heterotetramer of two MnmE and two MnmG subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.-.-" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000030">
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    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 6 7" id="KW-0547">Nucleotide-binding</keyword>
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        <location>
            <begin position="8"/>
            <end position="134"/>
        </location>
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            <end position="461"/>
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        <ligand>
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            <dbReference type="ChEBI" id="CHEBI:57457"/>
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        <source>
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    <sequence length="464" mass="50755" checksum="9AC43859C1110D2A" modified="2015-11-11" version="1">MYPGMQDTIVAVSTPAGRSFHAIIRISGPEAIPCVRSIFIPATNIEWKDIPSYSSLKGFICSSKEQVSIPVFLYLMKKPFSYTKEDVVEIHTTGSPPLLEILLDTLLSEKIQAHRSIRLSQPGEFTKRAFLHGRIDLAQAEATMRIIRAQTDLELAAAVEQLTGNVSRQIRQIQDKIVSLLAQIEAAIDFSDQDIELIPATEIIRQLAELKIAISRLFHQPETGKVSTEGIGAVFYGKPNVGKSSLINALLGKRRSIVSDVPGTTRDIVADTVEIGGICFKLTDTAGVEVIKEAGIAGLTEKVQSVLKRAQVVLLVFDGSLSLAEQFLELKVDDLAAITIVIVNKSDLTSLRQSLPPELEKYPVVYTSAQTGEGLEELKYLLIDTVLGGRIETIPCLMNIRQKDALQRSLHSVQCAVESAQRDESHEFIALDVRAAADAMGEVLGSVTTEDILTKIFSEFCIGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V292</accession>
    <name>A0A0M2V292_9BACT</name>
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        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
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        <name evidence="2" type="ORF">BROFUL_00424</name>
    </gene>
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            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
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        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
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        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
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    </dbReference>
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        <property type="gene ID" value="BROFUL_00424"/>
    </dbReference>
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    </dbReference>
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        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="EMBL" id="KKO20839.1"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="88" mass="10116" checksum="B35EFECAF7FB8019" modified="2015-11-11" version="1">MERRWNTPQSFRTKPETHYGMDQDGAIATSGYSSGTNYHRAYALWYGARRYLSMAFPIMASRLYGEGNQAGRAYLFPLFCILGIFYPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2G4</accession>
    <name>A0A0M2V2G4_9BACT</name>
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    </protein>
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    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
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                <person name="Speth D.R."/>
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                <person name="Op den Camp H.J."/>
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            </authorList>
            <dbReference type="PubMed" id="24267221"/>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
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    </dbReference>
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        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20894.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="53" mass="6184" checksum="39EA8C064F28A830" modified="2015-11-11" version="1" fragment="single">MRQTEIHLTEEDKAALKVFRSKGKHMAREINRTHILLALDEKMPELLIMQVLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2T4</accession>
    <name>A0A0M2V2T4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00282</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
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        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
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            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
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        <property type="protein sequence ID" value="KKO20999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20999">
        <property type="protein sequence ID" value="KKO20999"/>
        <property type="gene ID" value="BROFUL_00282"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.344"/>
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        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
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        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1730">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042097">
        <property type="entry name" value="Aminopeptidase_N-like_N_sf"/>
    </dbReference>
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        <property type="entry name" value="Peptidase_M1_dom"/>
    </dbReference>
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        <property type="entry name" value="Peptidase_M4/M1_CTD_sf"/>
    </dbReference>
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        <property type="entry name" value="Peptidase_M1"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF63737"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_M1" evidence="1">
        <location>
            <begin position="308"/>
            <end position="450"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="712" mass="81112" checksum="1DBCF646B7CAE4EE" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2V2</accession>
    <name>A0A0M2V2V2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Co-chaperonin GroES</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">10 kDa chaperonin</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Chaperonin-10</fullName>
            <shortName evidence="3">Cpn10</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">groES</name>
        <name evidence="3" type="synonym">groS</name>
        <name evidence="5" type="ORF">BROFUL_00263</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 4">Together with the chaperonin GroEL, plays an essential role in assisting protein folding. The GroEL-GroES system forms a nano-cage that allows encapsulation of the non-native substrate proteins and provides a physical environment optimized to promote and accelerate protein folding. GroES binds to the apical surface of the GroEL ring, thereby capping the opening of the GroEL channel.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Heptamer of 7 subunits arranged in a ring. Interacts with the chaperonin GroEL.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3 4">Belongs to the GroES chaperonin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000031">
        <property type="protein sequence ID" value="KKO21014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21014">
        <property type="protein sequence ID" value="KKO21014"/>
        <property type="gene ID" value="BROFUL_00263"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.321"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00320">
        <property type="entry name" value="cpn10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.33.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00580">
        <property type="entry name" value="CH10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020818">
        <property type="entry name" value="Chaperonin_GroES"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037124">
        <property type="entry name" value="Chaperonin_GroES_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018369">
        <property type="entry name" value="Chaprnonin_Cpn10_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10772">
        <property type="entry name" value="PTHR10772"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00166">
        <property type="entry name" value="Cpn10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00297">
        <property type="entry name" value="CHAPERONIN10"/>
    </dbReference>
    <dbReference type="SMART" id="SM00883">
        <property type="entry name" value="Cpn10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00681">
        <property type="entry name" value="CHAPERONINS_CPN10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 4" id="KW-0143">Chaperone</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00580"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO21014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="95" mass="10305" checksum="B370F4CDE846C2A6" modified="2015-11-11" version="1">MNVMPLGEKLLIKRIEAEGKTAGGIVLPDSAKEKPREGKIIAVGSGKLLKSGERAKFQVKKGERVLFSSYGGTEVKIDGEEYLLMSEDDILAVIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V364</accession>
    <name>A0A0M2V364_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00181</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000018">
        <property type="protein sequence ID" value="KKO21099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21099">
        <property type="protein sequence ID" value="KKO21099"/>
        <property type="gene ID" value="BROFUL_00181"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.221"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011204">
        <property type="entry name" value="Virulence_RhuM-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13310">
        <property type="entry name" value="Virulence_RhuM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015268">
        <property type="entry name" value="Virulence_RhuM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="347" mass="40519" checksum="8746F1DF7183C8AF" modified="2015-11-11" version="1">MDNAENKSQLIIYRAEDGKIKIDVRFQDETVWLTQKLMAELFQTTIANINIHIKNVFDEGELSQDSVIKDFLITASDGKKYHTNFYNLDMIISVGYRVKSHVATRFRQWATQQLREYIVKGFVMDDERLKHGANIGSDYFDELLERIRDIRSSEKRFYQKIRDIYKLAVDYDPKAEETLEFFKIVQNKLHFAISGKTAAEIISGRADASKPNMGLTSWKGAKVRQGDVTIAKNYLNEKEMEQLNRIVTMYLDYAEDQAKRHRQIFMRDWRKKLDAFLKFNERDILEHAGTVTKEVADALALEQYEVFHKQRLKDEAEAEALADDEVLKEIEQKAAKRLSKKKGRKNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V3J7</accession>
    <name>A0A0M2V3J7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putative heme protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_00029</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000006">
        <property type="protein sequence ID" value="KKO21234.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21234">
        <property type="protein sequence ID" value="KKO21234"/>
        <property type="gene ID" value="BROFUL_00029"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0349">Heme</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="45"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="75"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="108"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="6">
        <location>
            <begin position="149"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO21234.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="284" mass="32816" checksum="A2A0776A9577E687" modified="2015-11-11" version="1">MTPMMNSVLSFVLLGIGIVASTHILTLLNRHDTSHGRYFRWVHRISGYLFFSLYLFLSVVMFQKLEGLSVLPPKAAIHAYIGIAILPLIIIKIGIARFYKKFYKSLPVYGVILMIAVFLQIPLHAGLYLISTIRSQYIALSDKGRLVRVNIRIGREIVRQKCVICHSLERVYAHVKSEADWRDYVARMRAKDPAFMNDREALNALGYLVKNLGIDETKMDIQVGMRIILEKCHTCHTIERVFTARKTPAEWVKTVELMRSFDPLLLNDFEVRQVNYYLREVLAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UP73</accession>
    <name>A0A0M2UP73_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">tRNA-specific 2-thiouridylase MnmA</fullName>
            <ecNumber evidence="7">2.8.1.13</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">mnmA</name>
        <name evidence="8" type="ORF">BROFUL_03384</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>AH2 + ATP + S-sulfanyl-L-cysteinyl-[protein] + uridine(34) in tRNA = 2-thiouridine(34) in tRNA + A + AMP + diphosphate + H(+) + L-cysteinyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:47032"/>
            <dbReference type="Rhea" id="RHEA-COMP:10131"/>
            <dbReference type="Rhea" id="RHEA-COMP:11726"/>
            <dbReference type="Rhea" id="RHEA-COMP:11727"/>
            <dbReference type="Rhea" id="RHEA-COMP:11728"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61963"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:87170"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.8.1.13"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the MnmA/TRMU family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.8.1.13" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17933.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17933">
        <property type="protein sequence ID" value="KKO17933"/>
        <property type="gene ID" value="BROFUL_03384"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4160"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016783">
        <property type="term" value="F:sulfurtransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01998">
        <property type="entry name" value="tRNA_Me_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.280">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00144">
        <property type="entry name" value="tRNA_thiouridyl_MnmA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023382">
        <property type="entry name" value="Adenine_a_hdrlase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004506">
        <property type="entry name" value="tRNA-specific_2-thiouridylase"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00420">
        <property type="entry name" value="trmU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="8" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 7 8" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 7" id="KW-0819">tRNA processing</keyword>
    <keyword evidence="2 7" id="KW-0820">tRNA-binding</keyword>
    <feature type="region of interest" description="Interaction with tRNA" evidence="7">
        <location>
            <begin position="148"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="region of interest" description="Interaction with tRNA" evidence="7">
        <location>
            <begin position="304"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="7">
        <location>
            <position position="102"/>
        </location>
    </feature>
    <feature type="active site" description="Cysteine persulfide intermediate" evidence="7">
        <location>
            <position position="198"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="8"/>
            <end position="15"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="34"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="126"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="site" description="Interaction with tRNA" evidence="7">
        <location>
            <position position="127"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with tRNA" evidence="7">
        <location>
            <position position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO17933.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="361" mass="40160" checksum="2CBA765F8B3B55BB" modified="2015-11-11" version="1">MKAKVVVAMSGGVDSSVAAHLLVEQGYEVVGLFMRLGIDKLDTTTKTKICCSLEDAQDARTVADQLGIQFHVLNFKDAFNRIINTFCTEYLNGRTPNPCILCNQDLKFGRLLDFAKMLNADFIATGHYAKVEKACDRYLLKKGADSRKDQSYVLFSLNQEQLSRTIFPLGMVTKEAVREIARNLNLKTKDKPESQDVCFVLDNNYHTLLYERFGDRITPGLLKDTKGNVLGRHQGLPFFTIGQRKGLGVALGTPRYVVDINPQENTVVIGTDAELLENELVASAINWISIDKLDTPLNVQAKIRYHHVAADATVYPDKPDAVRVVFKEPQRAITPGQAVVFYDNDTVVGGGWIERKSGKTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ81</accession>
    <name>A0A0M2UQ81_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Two-component sensor kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03053</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000284">
        <property type="protein sequence ID" value="KKO18243.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18243">
        <property type="protein sequence ID" value="KKO18243"/>
        <property type="gene ID" value="BROFUL_03053"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001610">
        <property type="entry name" value="PAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13426">
        <property type="entry name" value="PAS_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00086">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PAS" evidence="2">
        <location>
            <begin position="22"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="3">
        <location>
            <begin position="95"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="1">
        <location>
            <begin position="160"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="287"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18243.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="287" mass="32017" checksum="8D475D861DDBC694" modified="2015-11-11" version="1" fragment="single">MSKYFLLDTMDTMDTLTGIVNQALDCIGKGIMIQDINRRVVFFNHACEEITKWSRAEVIGKDCGDIFLCHTSTGMCLTEKFCPGMEIFHGGLSQGSRELLIRRGDGTESWVKMSVSPLKTPGGKVTHLVSVIEDISDIKRFSDEVLRSKTLSTLGAFAAELAHEVKNPLNAMNIQMTVLEREIHDIKKLGDRAKKELLDVVTIVQKELHRLSGFVEECLHFSKTGELNKSSVHVGDLLSEIVSLLLPQAQLQGIQIEFVIKNALPEIMIDRDKIKQAILNILINGIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQE5</accession>
    <name>A0A0M2UQE5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Hydroxylamine oxidoreductase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">hao_9</name>
        <name evidence="3" type="ORF">BROFUL_02975</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000281">
        <property type="protein sequence ID" value="KKO18318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18318">
        <property type="protein sequence ID" value="KKO18318"/>
        <property type="gene ID" value="BROFUL_02975"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036280">
        <property type="entry name" value="Multihaem_cyt_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48695">
        <property type="entry name" value="SSF48695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="26"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="437"/>
            <end position="469"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="469" mass="52207" checksum="3E32EE6B5491E98E" modified="2015-11-11" version="1">MERYWVPVPDIYMPVSAKGDTMPLKYVTIVVILTGLALLAGCATQKETTNIPQKTIIPPPEEAATPIPGKTEAVVSITKKERGITEESLKCITCHEERRVTHGWVADWEGSKHARKGVGCEVCHVGSVTELATTETAELEYLGTQGSTCEDKKVRRHVTASMCGKCHKKEHQEFMRSRHSISWDRMLECGNLLSIPKDLRSEKCAQCHNIQFKCDSCHTRHTFNTLEAKTPEACRTCHMGPDNPHYEMYISSKHGSVYTASQAGILKESRTIASLRSPVCVTCHMPQGTHDLSFGLTYGPVAGSGLPYIDRNGAAIDEVEFAKKRTDMLSVCTICHSLSFAKKTLLDADDTYKNIETVIKDARDIVTGLERENLLSPPIGKTMNTLLPGHAFVQEALPSYTNKPRIERLFIQLTQGAAVAWKGAYHGNPGHTHLCGWAKLQEDLSGMKEEVTKIREEAEFQRKMKIKLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQG3</accession>
    <name>A0A0M2UQG3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Rubrerythrin domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03411</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000312">
        <property type="protein sequence ID" value="KKO17900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17900">
        <property type="protein sequence ID" value="KKO17900"/>
        <property type="gene ID" value="BROFUL_03411"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012347">
        <property type="entry name" value="Ferritin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003251">
        <property type="entry name" value="Rubrerythrin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02915">
        <property type="entry name" value="Rubrerythrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rubrerythrin" evidence="1">
        <location>
            <begin position="5"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO17900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="161" mass="19278" checksum="780B56A9D4C2678F" modified="2015-11-11" version="1">MNIYDFAMQMEKDGEQYYRNLIQKTRNAGLKKILDMLADAEVRHYDTLQKMKKNEKTQLPDSEILSKVKNIFMEMKAGKDTLDVNVSQKEFYKKAQEIEKKSRQFYTEKAAEVDNQSQRETFLTIADEEERHYVILENIINFISQPSTWLENAEWYHLDEY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQJ7</accession>
    <name>A0A0M2UQJ7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03191</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18142">
        <property type="protein sequence ID" value="KKO18142"/>
        <property type="gene ID" value="BROFUL_03191"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="51"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="78"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="104" mass="11171" checksum="C2F64FEEA4FAC966" modified="2015-11-11" version="1">MLGGGIVSTVTFLGSQGKGLLAAFVATFPTMTVLTFALIHGKAGQSATLDYAKGLLFMTPPWIFYVICLILLLPRWGFLKSLIVGVLTYMILAGLVSVVIRHLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQQ7</accession>
    <name>A0A0M2UQQ7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 3">Diaminopimelate decarboxylase</fullName>
            <shortName evidence="2">DAP decarboxylase</shortName>
            <shortName evidence="2">DAPDC</shortName>
            <ecNumber evidence="2 3">4.1.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">lysA</name>
        <name evidence="6" type="ORF">BROFUL_02862</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 3">
            <text>H(+) + meso-2,6-diaminoheptanedioate = CO2 + L-lysine</text>
            <dbReference type="Rhea" id="RHEA:15101"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:32551"/>
            <dbReference type="ChEBI" id="CHEBI:57791"/>
            <dbReference type="EC" id="4.1.1.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 2 3">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2 3">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; L-lysine from DL-2,6-diaminopimelate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the Orn/Lys/Arg decarboxylase class-II family. LysA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.20" evidence="2 3"/>
    <dbReference type="EMBL" id="LAQJ01000270">
        <property type="protein sequence ID" value="KKO18428.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18428">
        <property type="protein sequence ID" value="KKO18428"/>
        <property type="gene ID" value="BROFUL_02862"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3545"/>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00027"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008836">
        <property type="term" value="F:diaminopimelate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06828">
        <property type="entry name" value="PLPDE_III_DapDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.37.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02120">
        <property type="entry name" value="LysA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009006">
        <property type="entry name" value="Ala_racemase/Decarboxylase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002986">
        <property type="entry name" value="DAP_deCOOHase_LysA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022643">
        <property type="entry name" value="De-COase2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022657">
        <property type="entry name" value="De-COase2_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022644">
        <property type="entry name" value="De-COase2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000183">
        <property type="entry name" value="Orn/DAP/Arg_de-COase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029066">
        <property type="entry name" value="PLP-binding_barrel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02784">
        <property type="entry name" value="Orn_Arg_deC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00278">
        <property type="entry name" value="Orn_DAP_Arg_deC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01181">
        <property type="entry name" value="DAPDCRBXLASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01179">
        <property type="entry name" value="ODADCRBXLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50621">
        <property type="entry name" value="SSF50621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51419">
        <property type="entry name" value="SSF51419"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01048">
        <property type="entry name" value="lysA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00879">
        <property type="entry name" value="ODR_DC_2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2 3" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="2 3" id="KW-0456">Lyase</keyword>
    <keyword evidence="2 3" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Orn_Arg_deC_N" evidence="5">
        <location>
            <begin position="36"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="domain" description="Orn_DAP_Arg_deC" evidence="4">
        <location>
            <begin position="280"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="2">
        <location>
            <begin position="273"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="239"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="276"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="313"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="317"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="358"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="386"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="2">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18428.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="430" mass="47573" checksum="2F9172289A7FC3DD" modified="2015-11-11" version="1">MDAFEYRDKTLFCEKVKIEDIISEVGTPAYIYSKNAILARYHELKAAFGDVDSLICFSVKSNSNLSLCKILAEAGSGFDVVSGGELFRTIKAGGDPSKIVFAGVGKTDGEIRDALANDIFMFNVESLAELEHIDRLARDVGKVAKVALRINPDIDAKTHAKTTTGKKENKFGIDFTEAEGLIKQSSRYPGIELCGLHVHLGSPIYTVDPYVNALRKIIKLIEKCRDAGLDIEYMNIGGGYCISYTGEEVIRPRDYASKILPLVKEMQCNLLMEPGRFITGNSGILITRVTYTKETVHGKKFIICDAAMNDLLRPALYDAFHRIWPVTTGIPMPKVEEPEKAAVKKGTELVDIVGPVCESSDVFASKRALPKVGEGDLLAIFSAGAYGFSMSSQYNSRPRPCEVLVDRDQYRIIRERETYDDLIKGEIIPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQU2</accession>
    <name>A0A0M2UQU2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F0F1 ATP synthase epsilon subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02841</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000268">
        <property type="protein sequence ID" value="KKO18458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18458">
        <property type="protein sequence ID" value="KKO18458"/>
        <property type="gene ID" value="BROFUL_02841"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015986">
        <property type="term" value="P:proton motive force-driven ATP synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020546">
        <property type="entry name" value="ATP_synth_F1_dsu/esu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036771">
        <property type="entry name" value="ATPsynth_dsu/esu_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02823">
        <property type="entry name" value="ATP-synt_DE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51344">
        <property type="entry name" value="SSF51344"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-synt_DE_N" evidence="1">
        <location>
            <begin position="5"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18458.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="41" mass="4510" checksum="36040643048EF066" modified="2015-11-11" version="1">MAKTFKLEIITPEKVVYSDTVQSISAEGTEAPLVSLQTMRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQV1</accession>
    <name>A0A0M2UQV1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Glyco_hydro_63 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03057</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyl hydrolase 63 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000284">
        <property type="protein sequence ID" value="KKO18247.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18247">
        <property type="protein sequence ID" value="KKO18247"/>
        <property type="gene ID" value="BROFUL_03057"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3775"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004573">
        <property type="term" value="F:Glc3Man9GlcNAc2 oligosaccharide glucosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009311">
        <property type="term" value="P:oligosaccharide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008928">
        <property type="entry name" value="6-hairpin_glycosidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012341">
        <property type="entry name" value="6hp_glycosidase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031335">
        <property type="entry name" value="Glyco_hydro_63_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004888">
        <property type="entry name" value="Glycoside_hydrolase_63"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10412">
        <property type="entry name" value="PTHR10412"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03200">
        <property type="entry name" value="Glyco_hydro_63"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48208">
        <property type="entry name" value="SSF48208"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_hydro_63" evidence="3">
        <location>
            <begin position="80"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="422"/>
            <end position="441"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03200"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18247.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="441" mass="50545" checksum="9810CEFE7D353CFA" modified="2015-11-11" version="1">MNAFATIFTYRLEKARKGQGDIRWLERNFQKLLLNFTWWVNRKDRFGRNVFEGGFLGLDNIGVFDRSAPLPTGGYLEQADGTAWMALYCQNMLEIATELAMEKESYGDMCLKFVQHFLWIASSMIHTGEETGMWDEEDGFFYDVLRLPDGKAHRLKVRSMVGLLPLCAVTVFEGEIRNKFPEVEERFQRFLEARPELLAFIHNPIKVGYAERRLGSILDETKLRRVLAKMLDEREFLSPYGIRALSRHHADHPYVFRAGEQEYRVSYLPAESDSGMFGGNSNWRGPIWMPVNGLIIRALLQYFSYYGNDFTVECPTGSGRRMNLYQVADEITRRLSNIFLQDKDGRRPVYGDTRKFQEDPLWRDYIQFYEYFHGDNGAGLGASHQTGWTGIIARLMHIFATVTPELILEGGRKAVFEAAAQVKSGKPGGADKKGKRGASRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URJ4</accession>
    <name>A0A0M2URJ4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_02811</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000265">
        <property type="protein sequence ID" value="KKO18487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18487">
        <property type="protein sequence ID" value="KKO18487"/>
        <property type="gene ID" value="BROFUL_02811"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="197"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="9">
        <location>
            <begin position="221"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="8">
        <location>
            <begin position="323"/>
            <end position="550"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="268"/>
            <end position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO18487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="568" mass="64868" checksum="8F51F33E35F704C2" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URK6</accession>
    <name>A0A0M2URK6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02997</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18270.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18270">
        <property type="protein sequence ID" value="KKO18270"/>
        <property type="gene ID" value="BROFUL_02997"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="56"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="24"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="62"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18270.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="303" mass="34870" checksum="1765C52B439394F2" modified="2015-11-11" version="1">MFLYVVLMIQSFTYVQGEQVENSLYNMQEKLAIEKHNLEKLRTQLQILKTNDEDEKLGQRTGFQTHKPTNGSGGNSSSIVITPNENIVITKEIGEYDVPVYSIDAAQVKIIDVLQALSASFGKSILVDDELDPTHLASYVNISIKKSPLQDIIEVLLGLQGLEFIQDEDAIFVTSMAKLMLDTPFEYYRDKSIQLYQKAQIKYPNDRRIVKAYFELGNYYYELGFYFLALQEYQIVVGKYRGSQEAKDALFKIGRCYDKLKDSESARRATSNFCVVIQKILWPVKRFYQLVTHWQSKVSTTKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US06</accession>
    <name>A0A0M2US06_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02683</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S49 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000246">
        <property type="protein sequence ID" value="KKO18622.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18622">
        <property type="protein sequence ID" value="KKO18622"/>
        <property type="gene ID" value="BROFUL_02683"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07023">
        <property type="entry name" value="S49_Sppa_N_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001907">
        <property type="entry name" value="ClpP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004635">
        <property type="entry name" value="Pept_S49_SppA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002142">
        <property type="entry name" value="Peptidase_S49"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01343">
        <property type="entry name" value="Peptidase_S49"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00127">
        <property type="entry name" value="CLPPROTEASEP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00706">
        <property type="entry name" value="SppA_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_S49" evidence="2">
        <location>
            <begin position="47"/>
            <end position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01343"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18622.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="252" mass="27894" checksum="55C2BE0918DA562B" modified="2015-11-11" version="1">MVARIKEELKMAARDKHMKAIILRINSPGGTVTASDMIYHELEQFKKKTGMKIIACIMDLGASGGYYVAVSADKIIAHPTTVTGSIGVIMLNLSVEGLLQKIGVKDASIKTGEHKDMGSPLKTMTNEERRIFQGVMDTLYERFLTVIAENRKDLALEKLKTLADGRIYTAQQALEHGLIDQIGYLDEAVLLAKKATSLDKARVVIYHRPGIYKNNLYSQLNQGGFGTINLLNIDLKTFVNSGTPSFMYLWAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US84</accession>
    <name>A0A0M2US84_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Copper-transporting P-type ATPase</fullName>
            <ecNumber evidence="2">3.6.3.4</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">actP</name>
        <name evidence="2" type="ORF">BROFUL_02581</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.3.4" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000239">
        <property type="protein sequence ID" value="KKO18702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18702">
        <property type="protein sequence ID" value="KKO18702"/>
        <property type="gene ID" value="BROFUL_02581"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.620.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012348">
        <property type="entry name" value="RNR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011017">
        <property type="entry name" value="TRASH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007029">
        <property type="entry name" value="YHS_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04945">
        <property type="entry name" value="YHS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00746">
        <property type="entry name" value="TRASH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TRASH" evidence="1">
        <location>
            <begin position="42"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="domain" description="TRASH" evidence="1">
        <location>
            <begin position="94"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="139" mass="15956" checksum="F958AD90B6CE1440" modified="2015-11-11" version="1">MIAKYFLIPGFICIITGCANTTTLSQKEQPKVIDPVCAYFSDMGCVHITIGENTPKSSYEGVAYYFCSQECKVDFDKEPSKYLRNVTPPEGTIDFVCHMKIDELRRFVTCVYQDKIYYFCSDHCRTKYLTNPDAYTGKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USD3</accession>
    <name>A0A0M2USD3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF5679 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02366</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18973.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18973">
        <property type="protein sequence ID" value="KKO18973"/>
        <property type="gene ID" value="BROFUL_02366"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044044">
        <property type="entry name" value="DUF5679"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18930">
        <property type="entry name" value="DUF5679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF5679" evidence="1">
        <location>
            <begin position="5"/>
            <end position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18973.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="62" mass="6708" checksum="C840490CE549A120" modified="2015-11-11" version="1">MEARCMKCKTQKEMADVQMTMTARGGYMAKGKCKACGCGMCKIMTKGDAEKAVSEGQAKKAY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USF3</accession>
    <name>A0A0M2USF3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Deoxyhypusine synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02733</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the deoxyhypusine synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000254">
        <property type="protein sequence ID" value="KKO18565.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18565">
        <property type="protein sequence ID" value="KKO18565"/>
        <property type="gene ID" value="BROFUL_02733"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3380"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008612">
        <property type="term" value="P:peptidyl-lysine modification to peptidyl-hypusine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.910.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002773">
        <property type="entry name" value="Deoxyhypusine_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036982">
        <property type="entry name" value="Deoxyhypusine_synthase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11703">
        <property type="entry name" value="PTHR11703"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01916">
        <property type="entry name" value="DS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18565.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="346" mass="39086" checksum="F769FDEEFDE14C3D" modified="2015-11-11" version="1">MKIDSDLQDLPKFTKVHKEKYALTQGSISQFMNHHYRHFNAAATLDAARAYKRHIEDGGKMFVTIGGAMSTAEIGLSLAGMIRQDKVHGICCTGANLEEDVFNLVAHEHYVRIPNYRELTPDDEENLCKRHLNRVTDTCIPEAEALRRIETAMLEEWLAADRQGERFFPHEFMCKALLSGKLKEYYQIDPQDSWLMEAAIRKLPIFVPGWEDSTLGNMYAAHCISGEIRNIHTVKTGIEYMVLLAEWYTQIAPKGLGFFQIGGGIAGDFPICVVPMLHQDLRRPDVPLWSYFCQISDSTTSYGSYSGAVPNEKITWGKLGKDSPKFIIESDATIIAPLIFAYVLGW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USH4</accession>
    <name>A0A0M2USH4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">TDP-4-dehydrorhamnose reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02510</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000235">
        <property type="protein sequence ID" value="KKO18787.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18787">
        <property type="protein sequence ID" value="KKO18787"/>
        <property type="gene ID" value="BROFUL_02510"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029903">
        <property type="entry name" value="RmlD-like-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04321">
        <property type="entry name" value="RmlD_sub_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RmlD_sub_bind" evidence="1">
        <location>
            <begin position="9"/>
            <end position="291"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18787.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="333" mass="37591" checksum="29FAFFD3F8574E72" modified="2015-11-11" version="1">MSLPPFLPLLITGVTGVPGYSAFQYFHARYPDHVTAIRPVRYWPLRGKGIVPLDIEDRQGLAALMKQKQFKSVLNGAGSCALKSCEMNSVLAYRVNVQSVLNVLEMIGDRDVRLIHLSTDLVFPGKVEGFYKEEDAIAPVTMYGKTMAIAEEILMLRYSSAAIFRISLPMGVSVNGHAGAIDWILSRFKKNNPATLYFDELRSPFYCEDFNEVIARTLGNNIRGIYHLGSHRHLSLYQIGQIVNKVGGYAPHLLKGCMRKEAGPMPPRAGNVTMNNQKLIQALGIDPFRKWPYLDDHVPDGNDWHHDRPDHMVFHPEQIHKCLYRIPMACTWS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USI5</accession>
    <name>A0A0M2USI5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">SpoVT / AbrB like domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02712</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000251">
        <property type="protein sequence ID" value="KKO18595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18595">
        <property type="protein sequence ID" value="KKO18595"/>
        <property type="gene ID" value="BROFUL_02712"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007159">
        <property type="entry name" value="SpoVT-AbrB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037914">
        <property type="entry name" value="SpoVT-AbrB_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04014">
        <property type="entry name" value="MazE_antitoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00966">
        <property type="entry name" value="SpoVT_AbrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89447">
        <property type="entry name" value="SSF89447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SpoVT-AbrB" evidence="1">
        <location>
            <begin position="6"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="82" mass="9197" checksum="D672B016F0C63C67" modified="2015-11-11" version="1">MLRKICAIGNSCGVSIPKEILEKFHLTVGTQVEVKVDEKAKKIIIEPAVHKTPSEIIDREFAAQVNDFIEHYKPALKVLAQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USL0</accession>
    <name>A0A0M2USL0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Demethylmenaquinone methyltransferase</fullName>
            <ecNumber evidence="2">2.1.1.163</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">ubiE</name>
        <name evidence="2" type="ORF">BROFUL_02488</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.163" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18827">
        <property type="protein sequence ID" value="KKO18827"/>
        <property type="gene ID" value="BROFUL_02488"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043770">
        <property type="term" value="F:demethylmenaquinone methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102094">
        <property type="term" value="F:S-adenosylmethionine:2-demethylmenaquinol methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102955">
        <property type="term" value="F:S-adenosylmethionine:2-demethylmenaquinol-7 methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102027">
        <property type="term" value="F:S-adenosylmethionine:2-demethylquinol-8 methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025714">
        <property type="entry name" value="Methyltranfer_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13847">
        <property type="entry name" value="Methyltransf_31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltranfer_dom" evidence="1">
        <location>
            <begin position="36"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18827.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="269" mass="30766" checksum="3A6D21E385B91B8C" modified="2015-11-11" version="1">MQGNEYLMESDEEVLRLDIKTDNKIVENQALWAGIKPGMRVADICCGSGKTTSVLHNLIQPAGTAIGVDGSKNRIEYARKQYAVQGLEFRCKDIRDSLDDLGTYDFVWVRFFLEYYLADSFNIVQNISRIVKPGGILCLIDLDHNCLNHFALSPKLEKTIFAIVKYLEENANFDPYAGRKLYSHLYTLGYQDINVDVAAHHLIFGKLKDVDAFNWIKKVEVISGKIPHVFKEYQGGYEMFLHEFSSYFNDPGRFTYTPVILCRGRKPVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USS5</accession>
    <name>A0A0M2USS5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03274</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000299">
        <property type="protein sequence ID" value="KKO18051.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18051">
        <property type="protein sequence ID" value="KKO18051"/>
        <property type="gene ID" value="BROFUL_03274"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022904">
        <property type="term" value="P:respiratory electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016174">
        <property type="entry name" value="Di-haem_cyt_TM"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81342">
        <property type="entry name" value="SSF81342"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="57"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="134"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="160"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="183"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="257"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18051.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="281" mass="32760" checksum="AED602882F877AD0" modified="2015-11-11" version="1">MKSSINYVRFSLFHRFCHFLIIISFFGLVLTGMPLAFRGYAWARWLYELFGGYPTAGFIHRICALITFFAAFIHFLYLFICISVQKRKGFFWGPNSLLIQPRDLFDIVADLKWFLGIGKRPNFDQWIYWEKFEYLSLMWGTLVMAVTGLILWFPVQFTKIIPVSVATIVDLPSIALIIHRYEAILAAGFIFTIHFFHTHLLPEKMPVDEAIFTGKITEAEFRHERLNQFKRLESQQQLENYKVAPPSLFVSFLTRLFAVPILITGLIMVGFMFSALIVWAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UST4</accession>
    <name>A0A0M2UST4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF11 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02185</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000216">
        <property type="protein sequence ID" value="KKO19103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19103">
        <property type="protein sequence ID" value="KKO19103"/>
        <property type="gene ID" value="BROFUL_02185"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001434">
        <property type="entry name" value="DUF11"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01345">
        <property type="entry name" value="DUF11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF11" evidence="1">
        <location>
            <begin position="291"/>
            <end position="380"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="395" mass="43171" checksum="11C6C86647128E11" modified="2015-11-11" version="1">MTKKLFTSFAFFMPWLMLAVLAAAPLLAQQHIARRLGHPSTRFADPVHTIEELRDRLTSEGLVADIDVILNLHDGWQGRIEDFRYAAATAPVTALQIPVGASLPAMSSRKDGKPILVRNLIWGGEEPIDAYEFFFDSKGRRYRCVTPKICCNFWIEDLGPDGRAPVLMIECNTTDEVLVRRPVQVCLTVKNTGDAPEELVTVTLPVPDGAIFSKSGGEANTAAHRVIWRIRNLEPDASKLLCAHFIPQQLGSLTFASAAHGAIAQPVEAQCVTNVTGIPAVLLEVVDVDDPVEVHMQETYEISVINQGLTTLTNVKIVCTLEAHQEFVSGAGATSAQAQGRIITFAPLSTLAPKTTAKWQVVVKAIAAGDVRFATELTSDQFKRSINETEATRQY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USX6</accession>
    <name>A0A0M2USX6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03198</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000293">
        <property type="protein sequence ID" value="KKO18096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18096">
        <property type="protein sequence ID" value="KKO18096"/>
        <property type="gene ID" value="BROFUL_03198"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="65"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="97" mass="10798" checksum="F9F61C9A8A63FB5F" modified="2015-11-11" version="1">MIVRPAVRMPISIAASRNQVPRIKGDSGGCKKLTKKRKILHGNAILEQTTKNLKKVCFKKYYTPFYYRIATILSLAVNSFALDLAMGRNKLVGTGTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USY7</accession>
    <name>A0A0M2USY7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Rhomboid domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02355</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18962.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18962">
        <property type="protein sequence ID" value="KKO18962"/>
        <property type="gene ID" value="BROFUL_02355"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022764">
        <property type="entry name" value="Peptidase_S54_rhomboid_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035952">
        <property type="entry name" value="Rhomboid-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01694">
        <property type="entry name" value="Rhomboid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144091">
        <property type="entry name" value="SSF144091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="21"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="92"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="130"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="157"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="188"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="212"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="domain" description="Rhomboid" evidence="6">
        <location>
            <begin position="89"/>
            <end position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18962.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="295" mass="34681" checksum="7B943F2A9C24E969" modified="2015-11-11" version="1">MYNRLTFGMNIGSKWTRIIMVLIIANVGVFLLQLLFSTVSLQWSPQLLNTLTDEQLRQASSYPWHYPASDKFTKLFWLYPPDTLGRLWLWQFFTYMFLHSTTDPWHVIFNMLVLWMFGSEVERAIGPRRFLTLYFTAGIFAGICCCVFTPGTPILGASGAIFAIEVAFAMYFPNSTVIFYFFPIKAKYLVLIFASLTIFSCIIPKSDNVAHFAHLGGLVYGFLFVRYSYRVEEYLRKWQMHQQERELTKDHELRVKVDEILDKVNREGLRNLTWRERSFLKSASKRYKKNKELKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USZ0</accession>
    <name>A0A0M2USZ0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02151</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19168.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19168">
        <property type="protein sequence ID" value="KKO19168"/>
        <property type="gene ID" value="BROFUL_02151"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19168.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="61" mass="6633" checksum="3058C2AB1538F28F" modified="2015-11-11" version="1">MFKEYIANTLAMPCGPCAVRYSENGKAIIKICHLVGTKAMALTMQVEGTAGCTKMMYRITA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USZ4</accession>
    <name>A0A0M2USZ4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Putative nickel-responsive regulator</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_02114</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Transcriptional regulator.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
        </cofactor>
        <text evidence="7">Binds 1 nickel ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the transcriptional regulatory CopG/NikR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000212">
        <property type="protein sequence ID" value="KKO19173.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19173">
        <property type="protein sequence ID" value="KKO19173"/>
        <property type="gene ID" value="BROFUL_02114"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2639"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016151">
        <property type="term" value="F:nickel cation binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010045">
        <property type="term" value="P:response to nickel cation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00476">
        <property type="entry name" value="NikR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027271">
        <property type="entry name" value="Acetolactate_synth/TF_NikR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013321">
        <property type="entry name" value="Arc_rbn_hlx_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002145">
        <property type="entry name" value="CopG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022988">
        <property type="entry name" value="Ni_resp_reg_NikR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010985">
        <property type="entry name" value="Ribbon_hlx_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014864">
        <property type="entry name" value="TF_NikR_Ni-bd_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08753">
        <property type="entry name" value="NikR_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01402">
        <property type="entry name" value="RHH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47598">
        <property type="entry name" value="SSF47598"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 7" id="KW-0533">Nickel</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7" id="KW-0804">Transcription</keyword>
    <keyword evidence="4 7" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="RHH_1" evidence="8">
        <location>
            <begin position="6"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="domain" description="NikR_C" evidence="9">
        <location>
            <begin position="56"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="78"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="89"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="91"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="97"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022596"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00476"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01402"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF08753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19173.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="138" mass="15717" checksum="AC43A9D63EE9F9DD" modified="2015-11-11" version="1">MSSLVRFGVSLEKELLKRFDARIKEKKYTNRSEAIRDLIRDDLVKKEWQEGKEVTGSITIVYNHHKRELTNLLIDIQHDCHDTILSTQHIHLDHDNCLEIIVVKGKSKEIEALYGKLKSAKGVKHGGLSMATTGAEIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USZ7</accession>
    <name>A0A0M2USZ7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02572</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000238">
        <property type="protein sequence ID" value="KKO18740.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18740">
        <property type="protein sequence ID" value="KKO18740"/>
        <property type="gene ID" value="BROFUL_02572"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="64"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18740.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="111" mass="12746" checksum="66465865F922800C" modified="2015-11-11" version="1">MVNNINPTTSKLLEQIQRLSAPASKKEANQIDFKDTVISNRIRTDKELKRTDLLNSIERIQRKNNISAAPPADTKKKIFTGNTQPSEWTQFVDTQKNHRREPLGTVLDIYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT79</accession>
    <name>A0A0M2UT79_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03089</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000286">
        <property type="protein sequence ID" value="KKO18191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18191">
        <property type="protein sequence ID" value="KKO18191"/>
        <property type="gene ID" value="BROFUL_03089"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3815"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="383" mass="45310" checksum="F3B09AA72D9CEEE1" modified="2015-11-11" version="1">MPFEIARARPLLQKAELAKLFCEELGWESCRNSIEIRINESDYTLNALAEKKGFVAWIYTSPDNTLPDHNTRLKLDRKLSETSFEHLIVFRTNDQARQSWMWVRREAGRPLRARTYEYQRGQAGDALLQKIQRLYISLEEEESGISITQVSGRARAAFDVERITRRFYERFQREHAAFLNFIKGIPVEEDRAWYASVMLNRLMFLYFVQKKGFLDGDPNYLRNRLKAMQERHGRDKFYSFYRYFLLRLFHEGLGKIKHPHELESLIGKVPYINGGIFDVHAIEENYGKDIQIPDNAFEAIFDYFDEYDWALDPERSQRNSTDREEINPDVLGYIFEKYINQKQMGAYYTKEDITEYISKNTIIPFLFNAARQKCRIAFEGGVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT81</accession>
    <name>A0A0M2UT81_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative ferredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02233</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19052">
        <property type="protein sequence ID" value="KKO19052"/>
        <property type="gene ID" value="BROFUL_02233"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13187">
        <property type="entry name" value="Fer4_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="37"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="109" mass="12226" checksum="70678D7E3FC7421A" modified="2015-11-11" version="1">MSIFIDETICNGCKGLAEARCERICPGDLCYRKENTKAAIRDQSACWTCAGCVKECPVQAIELRLPFQICSNGSSLKARLKHDKTTWTIWDAEGHQENFIIQARCLKGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTB5</accession>
    <name>A0A0M2UTB5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Alanine--tRNA ligase</fullName>
            <ecNumber evidence="9">6.1.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Alanyl-tRNA synthetase</fullName>
            <shortName evidence="9">AlaRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">alaS</name>
        <name evidence="11" type="ORF">BROFUL_01963</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>ATP + L-alanine + tRNA(Ala) = AMP + diphosphate + L-alanyl-tRNA(Ala)</text>
            <dbReference type="Rhea" id="RHEA:12540"/>
            <dbReference type="Rhea" id="RHEA-COMP:9657"/>
            <dbReference type="Rhea" id="RHEA-COMP:9923"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78497"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="9">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="9">Consists of three domains; the N-terminal catalytic domain, the editing domain and the C-terminal C-Ala domain. The editing domain removes incorrectly charged amino acids, while the C-Ala domain, along with tRNA(Ala), serves as a bridge to cooperatively bring together the editing and aminoacylation centers thus stimulating deacylation of misacylated tRNAs.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 9">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.7" evidence="9"/>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19303.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19303">
        <property type="protein sequence ID" value="KKO19303"/>
        <property type="gene ID" value="BROFUL_01963"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2445"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004813">
        <property type="term" value="F:alanine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006419">
        <property type="term" value="P:alanyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00036_B">
        <property type="entry name" value="Ala_tRNA_synth_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002318">
        <property type="entry name" value="Ala-tRNA-lgiase_IIc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018162">
        <property type="entry name" value="Ala-tRNA-ligase_IIc_anticod-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018165">
        <property type="entry name" value="Ala-tRNA-synth_IIc_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018164">
        <property type="entry name" value="Ala-tRNA-synth_IIc_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023033">
        <property type="entry name" value="Ala_tRNA_ligase_euk/bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003156">
        <property type="entry name" value="DHHA1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018163">
        <property type="entry name" value="Thr/Ala-tRNA-synth_IIc_edit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012947">
        <property type="entry name" value="tRNA_SAD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02272">
        <property type="entry name" value="DHHA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01411">
        <property type="entry name" value="tRNA-synt_2c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07973">
        <property type="entry name" value="tRNA_SAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00980">
        <property type="entry name" value="TRNASYNTHALA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00863">
        <property type="entry name" value="tRNA_SAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101353">
        <property type="entry name" value="SSF101353"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55186">
        <property type="entry name" value="SSF55186"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00344">
        <property type="entry name" value="alaS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50860">
        <property type="entry name" value="AA_TRNA_LIGASE_II_ALA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="5 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 9" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 9" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 9" id="KW-0820">tRNA-binding</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="AA_TRNA_LIGASE_II_ALA" evidence="10">
        <location>
            <begin position="4"/>
            <end position="716"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="571"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="575"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="673"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="677"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO19303.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="892" mass="99679" checksum="6B19DB69F27E3151" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTI8</accession>
    <name>A0A0M2UTI8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7">50S ribosomal protein L31</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rpmE</name>
        <name evidence="8" type="ORF">BROFUL_03033</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Binds the 23S rRNA.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="7">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18306">
        <property type="protein sequence ID" value="KKO18306"/>
        <property type="gene ID" value="BROFUL_03033"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3745"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.830.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00501">
        <property type="entry name" value="Ribosomal_L31_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034704">
        <property type="entry name" value="L28p-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002150">
        <property type="entry name" value="Ribosomal_L31"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027491">
        <property type="entry name" value="Ribosomal_L31_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042105">
        <property type="entry name" value="Ribosomal_L31_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33280">
        <property type="entry name" value="PTHR33280"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01197">
        <property type="entry name" value="Ribosomal_L31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01249">
        <property type="entry name" value="RIBOSOMALL31"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143800">
        <property type="entry name" value="SSF143800"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00105">
        <property type="entry name" value="L31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01143">
        <property type="entry name" value="RIBOSOMAL_L31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 7 8" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 7" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="7" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="7">
        <location>
            <position position="16"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="18"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="36"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="39"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00029551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="74" mass="8468" checksum="3BE7C23F86484B58" modified="2015-11-11" version="1">MKEGIHPEYMETVVTCGCGESFKTRSTKPKIAIEICSKCHPFYTGKLRFVDSAGQIEKFKKRLQKSQKIEEAIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTR7</accession>
    <name>A0A0M2UTR7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02887</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18381">
        <property type="protein sequence ID" value="KKO18381"/>
        <property type="gene ID" value="BROFUL_02887"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="67" mass="7763" checksum="0C9DA713D5D59BA9" modified="2015-11-11" version="1">MRKRFEQQLKLGIIPISGVQLPIKNRDELPPILRALQYIYVTPELNEEVFRILEGKVLGGHLESHLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU85</accession>
    <name>A0A0M2UU85_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5 7">50S ribosomal protein L3</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rplC</name>
        <name evidence="9" type="ORF">BROFUL_01924</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 7">One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5 7">Part of the 50S ribosomal subunit. Forms a cluster with proteins L14 and L19.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the universal ribosomal protein uL3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19397.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19397">
        <property type="protein sequence ID" value="KKO19397"/>
        <property type="gene ID" value="BROFUL_01924"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2393"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01325_B">
        <property type="entry name" value="Ribosomal_L3_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000597">
        <property type="entry name" value="Ribosomal_L3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019927">
        <property type="entry name" value="Ribosomal_L3_bac/org-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019926">
        <property type="entry name" value="Ribosomal_L3_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11229">
        <property type="entry name" value="PTHR11229"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00297">
        <property type="entry name" value="Ribosomal_L3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03625">
        <property type="entry name" value="L3_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00474">
        <property type="entry name" value="RIBOSOMAL_L3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5 7" id="KW-0699">rRNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="132"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00019301"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19397.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="213" mass="23050" checksum="43FF806FA3B93184" modified="2015-11-11" version="1">MLNGFLGKKIGMTQIYSDDGALLPVTLIQAGPCSVMQIKTVENDGYSAVQLGFDDRKKKHATKSEIGHGAKTSLEPKRFVREIRSEASADVKLGQRIGVDIFQDVKTINVIGITKGKGYAGVMKRWNFKGGLNTHGSTRHRPPGSIGSNTDPGRVIRGKKMAGRLGGERVTIKNIDIIKIDAERNLLFVKGAVPGHKGSYLILNKVKTGKVGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU97</accession>
    <name>A0A0M2UU97_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Rhodanese domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01869</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000194">
        <property type="protein sequence ID" value="KKO19407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19407">
        <property type="protein sequence ID" value="KKO19407"/>
        <property type="gene ID" value="BROFUL_01869"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.250.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036873">
        <property type="entry name" value="Rhodanese-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00581">
        <property type="entry name" value="Rhodanese"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00450">
        <property type="entry name" value="RHOD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52821">
        <property type="entry name" value="SSF52821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rhodanese" evidence="1">
        <location>
            <begin position="62"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="152" mass="16811" checksum="0EA838E8DD3E897C" modified="2015-11-11" version="1">MSMPRKSRGISVVMRFTAVLIFITSASVTFNFNRCCAAETGAQTQTTVRNISPGQAREILEKSQDAYILDVRTKEEYNESHLKGANLIPIQELEQNISKIPKDKIIVVHCASGKRSAKACAMLKDKGLKELCNVEGGIKQWKAEGLPVEKSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUA6</accession>
    <name>A0A0M2UUA6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">3-isopropylmalate dehydrogenase</fullName>
            <ecNumber evidence="13">1.1.1.85</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">3-IPM-DH</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">Beta-IPM dehydrogenase</fullName>
            <shortName evidence="13">IMDH</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">leuB</name>
        <name evidence="16" type="ORF">BROFUL_02107</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13 14">Catalyzes the oxidation of 3-carboxy-2-hydroxy-4-methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2-oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 13 14">
            <text>(2R,3S)-3-isopropylmalate + NAD(+) = 4-methyl-2-oxopentanoate + CO2 + NADH</text>
            <dbReference type="Rhea" id="RHEA:32271"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:17865"/>
            <dbReference type="ChEBI" id="CHEBI:35121"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.1.1.85"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="13 14">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="13 14">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="13 14">Binds 1 Mg(2+) or Mn(2+) ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 13 14">Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 3/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5 13 14">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="13">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 13">Belongs to the isocitrate and isopropylmalate dehydrogenases family. LeuB type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.85" evidence="13"/>
    <dbReference type="EMBL" id="LAQJ01000211">
        <property type="protein sequence ID" value="KKO19180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19180">
        <property type="protein sequence ID" value="KKO19180"/>
        <property type="gene ID" value="BROFUL_02107"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2628"/>
    <dbReference type="UniPathway" id="UPA00048">
        <property type="reaction ID" value="UER00072"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003862">
        <property type="term" value="F:3-isopropylmalate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009098">
        <property type="term" value="P:leucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01033">
        <property type="entry name" value="LeuB_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019818">
        <property type="entry name" value="IsoCit/isopropylmalate_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024084">
        <property type="entry name" value="IsoPropMal-DH-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004429">
        <property type="entry name" value="Isopropylmalate_DH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42979">
        <property type="entry name" value="PTHR42979"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00180">
        <property type="entry name" value="Iso_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01329">
        <property type="entry name" value="Iso_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00169">
        <property type="entry name" value="leuB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00470">
        <property type="entry name" value="IDH_IMDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 13" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="12 13 14" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="13" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 13 14" id="KW-0432">Leucine biosynthesis</keyword>
    <keyword evidence="9 13" id="KW-0460">Magnesium</keyword>
    <keyword evidence="13" id="KW-0464">Manganese</keyword>
    <keyword evidence="8 13 14" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11 13 14" id="KW-0520">NAD</keyword>
    <keyword evidence="10 13" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Iso_dh" evidence="15">
        <location>
            <begin position="4"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <begin position="76"/>
            <end position="89"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="97"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="107"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="136"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="231"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="255"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="259"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <begin position="289"/>
            <end position="301"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="site" description="Important for catalysis" evidence="13">
        <location>
            <position position="143"/>
        </location>
    </feature>
    <feature type="site" description="Important for catalysis" evidence="13">
        <location>
            <position position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004762"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008319"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022430"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU004445"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="SMART" id="SM01329"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="KKO19180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="372" mass="40155" checksum="B394C38FC37AB5C8" modified="2015-11-11" version="1">MKKCIAILAGDGIGPEIMKEGRKVLDAVAKKFGHAFEYKEALVGGCAYDAYGHPLPDETKKICTASDAVYFGAVGGPKWENLPAELTPERGALLPLRAIYGLFANLRPAVIFGPLADAASLKSERLKGGLDILIVRELTGGVYFGRNKIKTLTLKEGAVQGDYAVDYMLYSVPEIQRITKVACEAAMKRNKRLTSVDKANVLESSKLWRKVVVDYVQKNYPQIQLNHMYVDNAAMQLATNPKQFDVIVTENMFGDILSDLASAITGSIGMLPSASLSETGFGLFEPIHGSAPDIAGQGKANPLAQILSGAMMLKYAFGLTKESDAVEKVILAVLEDGYRTGDIASASTPKDKILSTSGMGDKVAEYLRKHKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUD1</accession>
    <name>A0A0M2UUD1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">tRNA-splicing ligase RtcB</fullName>
            <ecNumber evidence="4">6.5.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rtcB</name>
        <name evidence="5" type="ORF">BROFUL_02088</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="3 4">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="3 4">Binds 2 manganese ions per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the RtcB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.5.1.-" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000209">
        <property type="protein sequence ID" value="KKO19210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19210">
        <property type="protein sequence ID" value="KKO19210"/>
        <property type="gene ID" value="BROFUL_02088"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2606"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008452">
        <property type="term" value="F:RNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1860.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001233">
        <property type="entry name" value="RtcB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036025">
        <property type="entry name" value="RtcB-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11118">
        <property type="entry name" value="PTHR11118"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01139">
        <property type="entry name" value="RtcB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103365">
        <property type="entry name" value="SSF103365"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01288">
        <property type="entry name" value="UPF0027"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="3 4" id="KW-0464">Manganese</keyword>
    <keyword evidence="3 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="GMP-histidine intermediate" evidence="1">
        <location>
            <position position="406"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="97"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="205"/>
            <end position="209"/>
        </location>
        <ligand>
            <name>GMP</name>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="206"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="237"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="331"/>
            <end position="332"/>
        </location>
        <ligand>
            <name>GMP</name>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="331"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="380"/>
            <end position="383"/>
        </location>
        <ligand>
            <name>GMP</name>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="387"/>
        </location>
        <ligand>
            <name>GMP</name>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="406"/>
            <end position="409"/>
        </location>
        <ligand>
            <name>GMP</name>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="482"/>
        </location>
        <ligand>
            <name>GMP</name>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR601233-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR601233-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR601233-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU371113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="483" mass="53293" checksum="CA2C7412241182D3" modified="2015-11-11" version="1">MADDKYKIQKIDDYRWRIPREGKMRVDGIVYANEQMMKEIQKDESLQQVINVAHLPGIIGHSLGMPDIHWGYGFPIGGVAAFDVDEGVVSPGGVGYDINCGVRLLRTGLYQKEIASALESLVNTLFSNIPSGVGSHRKDLKLSQQDEKSVLKNGARWAVSQGYGTKEDLEHIEEQGCIAGADPELISDRAIERGLAQLGTLGSGNHFVEVGYVSEVYDESVARVLGLEEGGITIVVHTGSRGLGYQVCDDFLRLMINASRKYNIELPDRQLCCAPINSPEGREYLAAMACAANYAFANRQMITHWVRESFERALNISQKESKIATIYDVGHNIAKFEEHIVEGKKRRLCVHRKGATRAFPPHHPNTPDVYKSVGQPVLIPGDMGRCSYVLVGTEKAYTHTFGSTCHGAGRVMSRNQATRSAKGRNIAVELRERGILVRADSRATLVEEMPEAYKDVTEVVDVVDRAGISKKVVQLKPLCVIKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUD6</accession>
    <name>A0A0M2UUD6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01826</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000190">
        <property type="protein sequence ID" value="KKO19447.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19447">
        <property type="protein sequence ID" value="KKO19447"/>
        <property type="gene ID" value="BROFUL_01826"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="169"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19447.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="199" mass="22054" checksum="4EA67E925F471503" modified="2015-11-11" version="1">MTIELLLQQGIELTKQGKLHQAAFLFEKIFDVYPEEPRTLFNAAVVADLLGQRNQALNLLHRSINADPTFANPHYYLGQLHLKAGHFTEAYQSFCNTITCDVEFAPAYEGIKIVSSKMNLTPVGDRADIVFYTGGQSFHGRTMEEKGLGGSESALVFMARTLAANGLRFVYFVIVTNQVIMMGCIMQILLISISIGSNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUE2</accession>
    <name>A0A0M2UUE2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Acetate kinase</fullName>
            <ecNumber evidence="6">2.7.2.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Acetokinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6 8" type="primary">ackA</name>
        <name evidence="8" type="ORF">BROFUL_02069</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>acetate + ATP = acetyl phosphate + ADP</text>
            <dbReference type="Rhea" id="RHEA:11352"/>
            <dbReference type="ChEBI" id="CHEBI:22191"/>
            <dbReference type="ChEBI" id="CHEBI:30089"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.2.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="6">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="6">Mg(2+). Can also accept Mn(2+).</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Metabolic intermediate biosynthesis; acetyl-CoA biosynthesis; acetyl-CoA from acetate: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the acetokinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.2.1" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000208">
        <property type="protein sequence ID" value="KKO19225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19225">
        <property type="protein sequence ID" value="KKO19225"/>
        <property type="gene ID" value="BROFUL_02069"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2579"/>
    <dbReference type="UniPathway" id="UPA00340">
        <property type="reaction ID" value="UER00458"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008776">
        <property type="term" value="F:acetate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006085">
        <property type="term" value="P:acetyl-CoA biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006082">
        <property type="term" value="P:organic acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00020">
        <property type="entry name" value="Acetate_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004372">
        <property type="entry name" value="Ac/propionate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000890">
        <property type="entry name" value="Aliphatic_acid_kin_short-chain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023865">
        <property type="entry name" value="Aliphatic_acid_kinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21060">
        <property type="entry name" value="PTHR21060"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00871">
        <property type="entry name" value="Acetate_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000722">
        <property type="entry name" value="Acetate_prop_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00471">
        <property type="entry name" value="ACETATEKNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00016">
        <property type="entry name" value="ackA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01075">
        <property type="entry name" value="ACETATE_KINASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01076">
        <property type="entry name" value="ACETATE_KINASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 6 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6 7" id="KW-0808">Transferase</keyword>
    <feature type="active site" description="Proton donor/acceptor" evidence="6">
        <location>
            <position position="150"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="7"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="14"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="210"/>
            <end position="214"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="284"/>
            <end position="286"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="332"/>
            <end position="336"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="386"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="6">
        <location>
            <position position="182"/>
        </location>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="6">
        <location>
            <position position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="406" mass="44123" checksum="A73C359F4C78FE00" modified="2015-11-11" version="1">MRVVVINSGSSSIKYESFNLNGLSSAAKGLLECIGAAKSRLKHRWLTPAGAWEEIAETRPVADHREGFSFILEVSGRARADSAETEVFAVGHRVVHGGEKFREPAIIDDATLREIEALIPLAPLHNPANVRGINVMRELLPRVPQVAVFDTAFHQTMPPRAFHYALPYDLYQSAGVRRYGFHGSSHYYVAKEASRYLGIPSDKLNLITLHLGNGASATAIERGKSIDTSMGLTPLEGLIMGTRCGDLDPAVHFYLARKTGRSFEEIEGILNRESGLTGICGTNDMREIQSRVSGGDVRASLALEMFCYRIKKYIGAYYAALGSVDAIVFTGGIGENSAVVRGKSCEGLAGIGISLDGRRNIASGSGIREIQAEDDRVKILVIPTDEEREIAQQTVEVVGRAKDHGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUG5</accession>
    <name>A0A0M2UUG5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01821</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000189">
        <property type="protein sequence ID" value="KKO19482.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19482">
        <property type="protein sequence ID" value="KKO19482"/>
        <property type="gene ID" value="BROFUL_01821"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06325">
        <property type="entry name" value="PBP1_ABC_unchar_transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007487">
        <property type="entry name" value="ABC_transpt-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35271">
        <property type="entry name" value="PTHR35271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04392">
        <property type="entry name" value="ABC_sub_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="24"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19482.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="344" mass="38314" checksum="D40376E2E1162194" modified="2015-11-11" version="1">MVNQRRQRKQISGRFLVSHGTTKLFWYMLLFTTSFSITSPMVTAGQKGTPPLQTKVYSNVAIVIRSQQIAAYNEVIKSFEEECKERNITVKAIYDLKGDPEESKRIVYAVRNDKQKPHLVLAVGVLAATLAKDQFADIPVIFCMVINHDRFNLQGANITGISAEAPLEDQFAILKEMLGSRKHIGVIYDPRKTGKIISDALQAAKKFDITLLAKEVLSEREVDFALKSMISDIDAFWIIPDGTVITKEALDTIFKRTLKKRIPTFCTSPAIVKAGALVSVSPDYIYTGKQAANLAQALLNNPTMLSLGLKQPDKLKITFNTSTAKMIGVSPTFFKTRSDVVFYP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUQ8</accession>
    <name>A0A0M2UUQ8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03117</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000286">
        <property type="protein sequence ID" value="KKO18219.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18219">
        <property type="protein sequence ID" value="KKO18219"/>
        <property type="gene ID" value="BROFUL_03117"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18219.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="28" mass="2984" checksum="CC8E39D2C36B48BA" modified="2015-11-11" version="1" fragment="single">MGATPCTDGITIEFGCQIRVELKDGSLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUX0</accession>
    <name>A0A0M2UUX0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Long-chain-fatty-acid--CoA ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02509</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000235">
        <property type="protein sequence ID" value="KKO18786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18786">
        <property type="protein sequence ID" value="KKO18786"/>
        <property type="gene ID" value="BROFUL_02509"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3116"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="9"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="399"/>
            <end position="474"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="482" mass="53347" checksum="DACA6A31CF6A90F7" modified="2015-11-11" version="1">MTLITSFLNTCKKYPGKTAILDQNGSLCYEDLRKEVLRYTGRVLSGGAGKNVGILLPNGKEFAAAFYGILATGKTPVPLNFLLSPAQLFYVIRDAEIDTVFTCKLFAPLLGDQIKHLFLVEEGHTDACLNEGSIQYGNAEEQAAMLYTSGTSANPKGVILTHNNFLSNLEGCIHAFHFTEKDILLGILPLFHTYALTTTLILPVCVGATILYLPRFSGPKVLEMIEKHKVTSLFAIPSMYRVLLRTAESTKHDLRTLRLCTSGGEPLPGDVLEAFCKVFPVPLTEGYGLTEATAIVSVNLPEKSEPGSIGPPLDNVEVKIVNDNGQGQPANREGEIWVKGPNVMKGYHKLPKETAETITSDRWLKTGDYGKLDEEGFLWITGRKKELIIISGENVSPTEIEHVISRYEKVFEVAVVGVPDKVRGEVPKAFIALREHATCSEEEIRDYCMTRLPHYKVPKYFVFHRELPHGPTGKILKRALKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUY2</accession>
    <name>A0A0M2UUY2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01681</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000175">
        <property type="protein sequence ID" value="KKO19607.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19607">
        <property type="protein sequence ID" value="KKO19607"/>
        <property type="gene ID" value="BROFUL_01681"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2079"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19607.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="381" mass="43712" checksum="D8733C72846DAF2B" modified="2015-11-11" version="1">MGLRAFSSQLLCEQVVGRGLRRTSYDVGKDGLFEPEYVNIFGVPFTFMPHEGTDGPPPPPPPPKTRIEPVEEKAEHKISFPNILRIDHVYQPQLSLNLEKVKPLELDPYESITGAELAAIIAGKPNPAALTEIDLKEIGEKFRMQSIIFRIASSIYNSEKKPDWKGSKETFLIQLIGIIEQFIYSDRIRIKNPLFNENEVKKRILSMLNLNKVIQHIWNELRAENTTQLTPVFDKEHPIRSTADVRTWWTSKPCEGFGKSHINFTVVDSKMEFLEARTINDCEAVESFVKNDHLGFAILYNHQGVIRRYFPDFIIRLKNGEYLILETKGHDSEQNKTKRAFLDEWCKAVNHHGGFGKWTGAVSFDPNDLEKVLQDVNNYTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUY5</accession>
    <name>A0A0M2UUY5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01850</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000191">
        <property type="protein sequence ID" value="KKO19435.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19435">
        <property type="protein sequence ID" value="KKO19435"/>
        <property type="gene ID" value="BROFUL_01850"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2304"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028098">
        <property type="entry name" value="Glyco_trans_4-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13439">
        <property type="entry name" value="Glyco_transf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_trans_4-like_N" evidence="2">
        <location>
            <begin position="16"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="domain" description="Glycos_transf_1" evidence="1">
        <location>
            <begin position="234"/>
            <end position="381"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19435.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="413" mass="47711" checksum="3D31A49795D2AFBD" modified="2015-11-11" version="1">MKILLINKSLYPKGGDAISTITTGNLLYSKGHEVMFWGMAHPLNPEYPYKDCFVSCIDFNDPGTVKNQIKMAVNMLYSFEAKKNIEKLMKIERPDIVHLNNFAHQISPSILHVFKKYKIPVVMTMRDYKLICPTYTMVLNDKPCERCRNGRYYQCSINKCTKNSLLKSLLNTMEMYLHHNIMHIYDLIDVYISPSKFLKSKCEEMGFKGKIVYLPNFVRVEDFNPQYDWLESSIVYFGRLSEEKGLFTLIEAVKDIQGITLKIIGEGPLRERLELEVRNSGIRNIEFLGYKGGKELKEEIRKAMFVVYPSEWYENNPRSIIEGFALGKPALGARIGGIPELVKDNETGVTFESGNGEDLKAKIEYLRKNPNKIVEMGKTARVFVEQELNDEKHYEKLMEIYQKTLEGNYAMST</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUY6</accession>
    <name>A0A0M2UUY6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">30S ribosomal protein S16</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rpsP</name>
        <name evidence="4" type="ORF">BROFUL_03031</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the bacterial ribosomal protein bS16 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18304">
        <property type="protein sequence ID" value="KKO18304"/>
        <property type="gene ID" value="BROFUL_03031"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3741"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00385">
        <property type="entry name" value="Ribosomal_S16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000307">
        <property type="entry name" value="Ribosomal_S16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023803">
        <property type="entry name" value="Ribosomal_S16_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12919">
        <property type="entry name" value="PTHR12919"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00886">
        <property type="entry name" value="Ribosomal_S16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54565">
        <property type="entry name" value="SSF54565"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00002">
        <property type="entry name" value="S16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1 3 4" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="85" mass="9781" checksum="BC381FE91AF446C9" modified="2015-11-11" version="1">MAVRLRMKRMGRKNRPYYRIGAFDAHEERDGKVIENLGTYDPLESNNEKQVTLKKDRVEYWLSVGAKPTESVAVVLKKCGVALKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV13</accession>
    <name>A0A0M2UV13_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HD-GYP domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02487</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18826.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18826">
        <property type="protein sequence ID" value="KKO18826"/>
        <property type="gene ID" value="BROFUL_02487"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3089"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037522">
        <property type="entry name" value="HD_GYP_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01590">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00065">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51832">
        <property type="entry name" value="HD_GYP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HD-GYP" evidence="1">
        <location>
            <begin position="447"/>
            <end position="645"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18826.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="664" mass="75509" checksum="A4C4CE7B84197B82" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV34</accession>
    <name>A0A0M2UV34_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cobyrinic acid a,c-diamide synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02444</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000232">
        <property type="protein sequence ID" value="KKO18851.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18851">
        <property type="protein sequence ID" value="KKO18851"/>
        <property type="gene ID" value="BROFUL_02444"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3038"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002586">
        <property type="entry name" value="CobQ/CobB/MinD/ParA_Nub-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014433">
        <property type="entry name" value="CooC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01656">
        <property type="entry name" value="CbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005647">
        <property type="entry name" value="CooC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CbiA" evidence="1">
        <location>
            <begin position="6"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18851.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="263" mass="29038" checksum="9106C00B00120C0C" modified="2015-11-11" version="1">MAFHIAVAGKGGTGKSTLSALIIRYITEEIGKPVSAVDADPNASLGSLLGLHVQNTVADLREDIVEKKVDFSGMSKDRYIEYAIEESILEKEKFDLLTMGRPEGPKCYCYVNNLLRKYLDKVGTTYPFIVTDNEAGMEHLSRRTTNNVDLLLIVSEPTIVGALTLQRILALADSLPVTIRQKFCILNRVPRNGIHENLQQKLSSLGIEIAAIFPFDQEVYDTAACGASVFEISRENELYQKLGKFLQKHLPASMLEKSVSGSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV79</accession>
    <name>A0A0M2UV79_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01311</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000138">
        <property type="protein sequence ID" value="KKO19963.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19963">
        <property type="protein sequence ID" value="KKO19963"/>
        <property type="gene ID" value="BROFUL_01311"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19963.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="101" mass="11658" checksum="DF01794FBDAEBB7E" modified="2015-11-11" version="1">MDKLCLSVLNYYKSQIVSLWSIIAQKRYRERYRAGTGKDPLVCPQCGQEMDICTIWHPRYGVIYDELNEIKRGKYEQSDVQGVITIPWSVLSESPLKALSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV83</accession>
    <name>A0A0M2UV83_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Fructose-bisphosphate aldolase</fullName>
            <ecNumber evidence="4">4.1.2.13</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">fba</name>
        <name evidence="4" type="ORF">BROFUL_01791</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="3">Binds 2 Zn(2+) ions per subunit. One is catalytic and the other provides a structural contribution.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.2.13" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000187">
        <property type="protein sequence ID" value="KKO19495.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19495">
        <property type="protein sequence ID" value="KKO19495"/>
        <property type="gene ID" value="BROFUL_01791"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2221"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004332">
        <property type="term" value="F:fructose-bisphosphate aldolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030388">
        <property type="term" value="P:fructose 1,6-bisphosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00947">
        <property type="entry name" value="TBP_aldolase_IIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000771">
        <property type="entry name" value="FBA_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011289">
        <property type="entry name" value="Fruc_bis_ald_class-2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01116">
        <property type="entry name" value="F_bP_aldolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001359">
        <property type="entry name" value="F_bP_aldolase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00167">
        <property type="entry name" value="cbbA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01859">
        <property type="entry name" value="fruc_bis_ald"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00806">
        <property type="entry name" value="ALDOLASE_CLASS_II_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <feature type="region of interest" description="Dihydroxyacetone phosphate binding" evidence="2">
        <location>
            <begin position="216"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="region of interest" description="Dihydroxyacetone phosphate binding" evidence="2">
        <location>
            <begin position="258"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="1">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="84"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="105"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="184"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="185"/>
        </location>
        <ligand>
            <name>dihydroxyacetone phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="215"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR001359-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR001359-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR001359-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19495.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="316" mass="34234" checksum="487D30CBC223B2A4" modified="2015-11-11" version="1">MALVSSKKMFQMAYKNGYAIGAFNVNNMEIIQGIMTAVREEKAPVILQISKGAREYASISYLRAIIDVAVKENPDIPVCMHLDHGDTFELCKQCVDDGYTSVMIDASHFPFAENVRLTKKVVEYAHARGVAVEAELGQLGGIEEQVVGVSADDVLKHLTDPNQVVEFVEKTGCDSLAIACGTSHGAYKFKSEPKLAFDVIEAVGKKLPGFPLVMHGASSVLPEFKDLINKYGGRMPDAMGVPESAITKAAKMAVCKVNIDTDLRMAMTASIRQVFAEKPGEFDPRKYLGPAREAIAGMVKHKLRVLGCAGKAAECC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVE2</accession>
    <name>A0A0M2UVE2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Phosphoribosylglycinamide formyltransferase</fullName>
            <ecNumber evidence="2">2.1.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">5'-phosphoribosylglycinamide transformylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="2">GAR transformylase</fullName>
            <shortName evidence="2">GART</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">purN</name>
        <name evidence="4" type="ORF">BROFUL_02852</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the transfer of a formyl group from 10-formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>(6S)-10-formyltetrahydrofolate + N(1)-(5-phospho-beta-D-ribosyl)glycinamide = (6S)-5,6,7,8-tetrahydrofolate + H(+) + N(2)-formyl-N(1)-(5-phospho-beta-D-ribosyl)glycinamide</text>
            <dbReference type="Rhea" id="RHEA:15053"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:57454"/>
            <dbReference type="ChEBI" id="CHEBI:143788"/>
            <dbReference type="ChEBI" id="CHEBI:147286"/>
            <dbReference type="EC" id="2.1.2.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Purine metabolism; IMP biosynthesis via de novo pathway; N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide from N(1)-(5-phospho-D-ribosyl)glycinamide (10-formyl THF route): step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the GART family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.2" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000268">
        <property type="protein sequence ID" value="KKO18469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18469">
        <property type="protein sequence ID" value="KKO18469"/>
        <property type="gene ID" value="BROFUL_02852"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3528"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00126"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004644">
        <property type="term" value="F:phosphoribosylglycinamide formyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd08645">
        <property type="entry name" value="FMT_core_GART"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01930">
        <property type="entry name" value="PurN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002376">
        <property type="entry name" value="Formyl_transf_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036477">
        <property type="entry name" value="Formyl_transf_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004607">
        <property type="entry name" value="GART"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00551">
        <property type="entry name" value="Formyl_trans_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53328">
        <property type="entry name" value="SSF53328"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00639">
        <property type="entry name" value="PurN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Formyl_trans_N" evidence="3">
        <location>
            <begin position="8"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="2">
        <location>
            <position position="110"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="66"/>
        </location>
        <ligand>
            <name>(6S)-10-formyltetrahydrofolate</name>
            <dbReference type="ChEBI" id="CHEBI:57454"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="108"/>
        </location>
        <ligand>
            <name>(6S)-10-formyltetrahydrofolate</name>
            <dbReference type="ChEBI" id="CHEBI:57454"/>
        </ligand>
    </feature>
    <feature type="site" description="Raises pKa of active site His" evidence="2">
        <location>
            <position position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="212" mass="23325" checksum="F721D301CF557537" modified="2015-11-11" version="1">MTKKINLGVLISGGGNTLQNFTDLIAAGKLPATIQIVISSKPDVAGLVKAKKHNLRTAVIPYANDKDADAFSRELTAELDKYPIDLITLAGFVHFYKIPEKYRGKVMNIHPGLIPAFCGHHYYGKKVHEAVINYGAKVSGCTVHFADNVYDNGPIIIQRAVPVLDDDTPDTLAARVFREECAAYPEAIRLFAEGRLKIEGRKVRILKPLNNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVP0</accession>
    <name>A0A0M2UVP0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Secretory pathway protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01665</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GSP E family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19630">
        <property type="protein sequence ID" value="KKO19630"/>
        <property type="gene ID" value="BROFUL_01665"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2056"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001482">
        <property type="entry name" value="T2SS/T4SS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037257">
        <property type="entry name" value="T2SS_E_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007831">
        <property type="entry name" value="T2SS_GspE_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00437">
        <property type="entry name" value="T2SSE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05157">
        <property type="entry name" value="T2SSE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160246">
        <property type="entry name" value="SSF160246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00662">
        <property type="entry name" value="T2SP_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="T2SP_E" evidence="2">
        <location>
            <begin position="374"/>
            <end position="388"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS00662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="564" mass="63079" checksum="78147A65ECD140BC" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVS6</accession>
    <name>A0A0M2UVS6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01117</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20158">
        <property type="protein sequence ID" value="KKO20158"/>
        <property type="gene ID" value="BROFUL_01117"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="10"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="9"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="55"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="89"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="123"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="157"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="191"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="225"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="259"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="320"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="354"/>
            <end position="387"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="423" mass="47375" checksum="F3B79115E405EC47" modified="2015-11-11" version="1">MGDLIMIKNLVSPFRTLTLMAVLVSGGIYGCSKVDMPDEVISAYRKAIQLNPGMAVAHYNLGIAYNDRTMVDEAIAELKKATQIDPNYKDALFQLGLLCVEKGLWEDAIAALESVVRLDPSNELALGKLADIYKSRKMLGEAIHEYEKVLAANPKDVVSLYHLGTVHAEKNEAEEAMKAFKMAIEFNPNYTDAHFGLGRIFLEKKQYGEAILELKTVTDINPNHAPAHYALGLTYYALHDMIKATEAFRRSIEINAKDPKVHYHLGMVYADERLFDKAIEEFRTVVKLDPNNAEAHYRLGKAYADKRVLVNTIATVRKAAAAHYNIQNPYSDKRALDEAIATLQKAIEVNPYNPSVYFDLGSAYSQSRILDEAAAALEETVRIDPNFARAHYGLSVIYKRKGMIEEAQREFSLYQQLTGECGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVU8</accession>
    <name>A0A0M2UVU8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01320</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000138">
        <property type="protein sequence ID" value="KKO19972.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19972">
        <property type="protein sequence ID" value="KKO19972"/>
        <property type="gene ID" value="BROFUL_01320"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003477">
        <property type="entry name" value="PemK-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02452">
        <property type="entry name" value="PemK_toxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19972.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="103" mass="11785" checksum="FB9DAA668E1972D2" modified="2015-11-11" version="1">MITEGQIVLFKFPQTDQKEGKLRPALILRELPGKFNDWLICMISSNIDQLIPELDELIAPEASDFIQSGLKVPSIIRAAGLPLLMERHSLVHWDRLTQKDYTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW13</accession>
    <name>A0A0M2UW13_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01019</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000120">
        <property type="protein sequence ID" value="KKO20253.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20253">
        <property type="protein sequence ID" value="KKO20253"/>
        <property type="gene ID" value="BROFUL_01019"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20253.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="325" mass="36992" checksum="52D8AB71ADDEC739" modified="2015-11-11" version="1">MIREKAPIFTIPLKRIEGFLADIICFRDAKARTNHPALAFVIGVHNESRLEVWDKFLIKHEYKISKQHGENFVDVTNDSNLIHRQGNIVPGAMTVSKIILPLEIIFSELEISSVNIKFTGSAYYNERTCNLFLWQFVSNDYIQIEVKTYQCDRTIATTIILGRLKAAGKQVKEIDESTVNKKCLSRVQTYFETLGIKSNFYLQKEEYKDYTYPLAYIASLPSAEIVNQLSGQGGMINILRMDFGSYERIPITGDRGPEVKLARAKKRNTFNKIMAEIAEGLVTYYRGLAIVNPIAKFHNSKEPVIGAINKLISTDHQEKEFIAPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW30</accession>
    <name>A0A0M2UW30_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01506</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000155">
        <property type="protein sequence ID" value="KKO19780.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19780">
        <property type="protein sequence ID" value="KKO19780"/>
        <property type="gene ID" value="BROFUL_01506"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19780.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="39" mass="4426" checksum="3D374A1F2AE8B7AB" modified="2015-11-11" version="1">MDKLCLSVLNYYKSQIVSLWSIVICVPVVTNHEKKFIGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW44</accession>
    <name>A0A0M2UW44_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative cytochrome b</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01217</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000132">
        <property type="protein sequence ID" value="KKO20067.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20067">
        <property type="protein sequence ID" value="KKO20067"/>
        <property type="gene ID" value="BROFUL_01217"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.810.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036150">
        <property type="entry name" value="Cyt_b/b6_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027387">
        <property type="entry name" value="Cytb/b6-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81648">
        <property type="entry name" value="SSF81648"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="14"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="62"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="117"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20067.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="137" mass="16052" checksum="81540E7B18C95795" modified="2015-11-11" version="1">MLEPFFPNELLRHIIISCFLIILEMGAIMAFPLTWKILDKPGHIPWFLLPIYQLRTLVQNEAVFISVLVLSALLFVSWPFLVRDRNYRRSSFPDAEGRSSSYARHSKERHNLWHRPLLFAIVITTIISLITLCFIKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW55</accession>
    <name>A0A0M2UW55_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00972</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000117">
        <property type="protein sequence ID" value="KKO20298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20298">
        <property type="protein sequence ID" value="KKO20298"/>
        <property type="gene ID" value="BROFUL_00972"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007487">
        <property type="entry name" value="ABC_transpt-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35271">
        <property type="entry name" value="PTHR35271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04392">
        <property type="entry name" value="ABC_sub_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644038" evidence="1">
        <location>
            <begin position="30"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="289" mass="32321" checksum="2BDAE20961612B92" modified="2015-11-11" version="1">MGACKTISIAKRALIALFAVCIMAGAVYAKDVKTVTILCNDAVPYQEVFAGFQRYLSRQRAKVNYHTYVLDDAALKPMQVMQQLKEEKADLIFAVGNKAADAVMDNVTDTPIVVSMILKNKKLMNTRNAMGVILEFPVETEFSFLRRIVPEVRRIGVIYNPKENEEKIVIAEGVAKKMGLILYAREVNNPKDLPNALKNIAKNSDVLWGIPDSMVFNAQTAKQILLFSFRNNIPFCGLSPSWVEAGASTRSVGIIRILECRAERLHGRYCRGMNQSQRRLSLPVRHGIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW73</accession>
    <name>A0A0M2UW73_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DDE_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01468</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000150">
        <property type="protein sequence ID" value="KKO19825.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19825">
        <property type="protein sequence ID" value="KKO19825"/>
        <property type="gene ID" value="BROFUL_01468"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1814"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038717">
        <property type="entry name" value="Tc1-like_DDE_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13358">
        <property type="entry name" value="DDE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0814">Transposable element</keyword>
    <feature type="domain" description="DDE_3" evidence="2">
        <location>
            <begin position="16"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19825.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="185" mass="21199" checksum="44371FE9E010B625" modified="2015-11-11" version="1">MATACVKNQDNLRVRLMLQDEARFGRMSDPRACWAPSPHRPVVNLALVREFRYEYAAVSPWDGDIDHMTREKMNTESMSCFLKQVSKAHPDEFTVMIVDGASSHKGKELEIPKNISLVFLPPYSPELNPAEQIWNILRRDYFANRVFDSLDAAIGQVGRGITLMAKNKEAVKNLTNWHWTSVETY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWB3</accession>
    <name>A0A0M2UWB3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01159</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000125">
        <property type="protein sequence ID" value="KKO20117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20117">
        <property type="protein sequence ID" value="KKO20117"/>
        <property type="gene ID" value="BROFUL_01159"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006270">
        <property type="term" value="P:DNA replication initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006275">
        <property type="term" value="P:regulation of DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06571">
        <property type="entry name" value="Bac_DnaA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1750.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013159">
        <property type="entry name" value="DnaA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010921">
        <property type="entry name" value="Trp_repressor/repl_initiator"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48295">
        <property type="entry name" value="SSF48295"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="217"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="248"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="271" mass="31337" checksum="1FA8F0426F3AC49E" modified="2015-11-11" version="1" fragment="single">VQSIWRRLGVGGGSPPSYQLKLPLSEKKKYLRNYPWNSLLGYVDDIRRNGTIDYARIFESYGGDNTEGRRLYWETICKDISTGIDIKEEVTGGSILGSETFIKWVRDRFLPAKSREIPAVQRLKKYTTKEAIIAALCKETKKSFDEIKKERGIIRQMAMDLFYRVGGLNGTEIGKMMGVDYSTVSQGKKRLRERLKDDKHLSQMIQRVEAALSTIKICPLFSFLPVHCFILSFLYIPFSFLCEWNSFHLVWVFINHFVSLWFPAPLTVLLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWJ4</accession>
    <name>A0A0M2UWJ4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Ferredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00858</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000105">
        <property type="protein sequence ID" value="KKO20433.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20433">
        <property type="protein sequence ID" value="KKO20433"/>
        <property type="gene ID" value="BROFUL_00858"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1084"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13187">
        <property type="entry name" value="Fer4_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="6"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="36"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20433.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="62" mass="6630" checksum="6215B28B60583D24" modified="2015-11-11" version="1">MERRSNVAHKITDDCINCGACESECPVNAISESDDKRIISAETCTDCGNCVEVCPVEAILAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWM3</accession>
    <name>A0A0M2UWM3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Ribosomal protein S12 methylthiotransferase RimO</fullName>
            <shortName evidence="7">S12 MTTase</shortName>
            <shortName evidence="7">S12 methylthiotransferase</shortName>
            <ecNumber evidence="7">2.8.4.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Ribosome maturation factor RimO</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rimO</name>
        <name evidence="10" type="ORF">BROFUL_00819</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>[sulfur carrier]-SH + AH2 + L-aspartate(89)-[ribosomal protein uS12]-hydrogen + 2 S-adenosyl-L-methionine = 3-methylsulfanyl-L-aspartate(89)-[ribosomal protein uS12]-hydrogen + 5'-deoxyadenosine + [sulfur carrier]-H + A + 2 H(+) + L-methionine + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:37087"/>
            <dbReference type="Rhea" id="RHEA-COMP:10460"/>
            <dbReference type="Rhea" id="RHEA-COMP:10461"/>
            <dbReference type="Rhea" id="RHEA-COMP:14737"/>
            <dbReference type="Rhea" id="RHEA-COMP:14739"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:29917"/>
            <dbReference type="ChEBI" id="CHEBI:29961"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:64428"/>
            <dbReference type="ChEBI" id="CHEBI:73599"/>
            <dbReference type="EC" id="2.8.4.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="7">Binds 2 [4Fe-4S] clusters. One cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the methylthiotransferase family. RimO subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.8.4.4" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000103">
        <property type="protein sequence ID" value="KKO20463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20463">
        <property type="protein sequence ID" value="KKO20463"/>
        <property type="gene ID" value="BROFUL_00819"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1035"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0103039">
        <property type="term" value="F:protein methylthiotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018339">
        <property type="term" value="P:peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01865">
        <property type="entry name" value="MTTase_RimO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005839">
        <property type="entry name" value="Methylthiotransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020612">
        <property type="entry name" value="Methylthiotransferase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013848">
        <property type="entry name" value="Methylthiotransferase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038135">
        <property type="entry name" value="Methylthiotransferase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005840">
        <property type="entry name" value="Ribosomal_S12_MeSTrfase_RimO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041582">
        <property type="entry name" value="RimO_TRAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43837">
        <property type="entry name" value="PTHR43837"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18693">
        <property type="entry name" value="TRAM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00919">
        <property type="entry name" value="UPF0004"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01061">
        <property type="entry name" value="methylthiotransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00274">
        <property type="entry name" value="ribosomal_protein_S12_methylth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00089">
        <property type="entry name" value="TIGR00089"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01125">
        <property type="entry name" value="TIGR01125"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51449">
        <property type="entry name" value="MTTASE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01278">
        <property type="entry name" value="MTTASE_RADICAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 7" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 7" id="KW-0408">Iron</keyword>
    <keyword evidence="6 7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="MTTase N-terminal" evidence="8">
        <location>
            <begin position="4"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="9">
        <location>
            <begin position="139"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="13"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="49"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="83"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="153"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="157"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="160"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01865"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO20463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="439" mass="49687" checksum="A112E18BEF0C9D2F" modified="2015-11-11" version="1">MKSKKVALINLGCPKNLVDAEEILGRVAETGSTICQYPEDAEVLIINTCGFIDDSKKESIDAIFRMAKLKEDARCKKLIVTGCLAQRYPDELQKEIPEIDHVVGLKDFDTLTGLSGSGDKKKKTAAAQCSDDWRNRIRLTPKHYAYLRISDGCDNHCTYCAIPGIRGRFHSRSIENILEEARQMACEGVKEVNVISQDTTSYGVDLYGKQQLHVLLEKLSRVKGIEWIRILYTHPRHFYPELISVIGRSDTICKYIDLPVQHINDTILREMGRGVTHAQIERLIDELRNHIPKLFLRTSVIVGFPGETGEHFAELLEFVKRTQFERLGVFPYSREEGTPAASLKKQIAKEIKDQRLKEIMLTQQKIILKKHKDLVKSTIAVIVDEQGKAEKTWLGRTYGDAPDVDSKVIIRENHLKIGDIKNMIITGTAGYDLLGKTET</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX37</accession>
    <name>A0A0M2UX37_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01185</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000126">
        <property type="protein sequence ID" value="KKO20110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20110">
        <property type="protein sequence ID" value="KKO20110"/>
        <property type="gene ID" value="BROFUL_01185"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644248" evidence="1">
        <location>
            <begin position="27"/>
            <end position="284"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="284" mass="31518" checksum="84123C1733AA7CB3" modified="2015-11-11" version="1">MKMKRCCLIIVSVCFLALAMVRTTVAQEKEQTPVSDYSDVIKESLPAWNEDVLKAPKQKTWTERASMQSLIEAVRDDVRGKQENFQDNERKVSIEKDRGYVRYINAHRGYKHGVSPAKPVAGDQAERMIVEAVKIIGVPEDELKGPHVATVLGQGGSIQEKARDAAFAREQLVYIERTVNNLPVFASEIKGSVSNSGEIARLLVKWPDFLMADVQKIKPRDQVISTILSQIREALQGQPIFSVNMKLAYTPLQTEGKIRYVPGIVVSVIPAAGNGIMFTVPVAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX72</accession>
    <name>A0A0M2UX72_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Nitroreductase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02198</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000220">
        <property type="protein sequence ID" value="KKO19084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19084">
        <property type="protein sequence ID" value="KKO19084"/>
        <property type="gene ID" value="BROFUL_02198"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2744"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.109.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029479">
        <property type="entry name" value="Nitroreductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000415">
        <property type="entry name" value="Nitroreductase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020051">
        <property type="entry name" value="SagB-type_dehydrogenase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00881">
        <property type="entry name" value="Nitroreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55469">
        <property type="entry name" value="SSF55469"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03605">
        <property type="entry name" value="antibiot_sagB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nitroreductase" evidence="1">
        <location>
            <begin position="69"/>
            <end position="250"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="257" mass="29416" checksum="1A13430F30A811E2" modified="2015-11-11" version="1">MDEDLIEQYRYFLKDSIRKEIDFSQTDQNRGADVPPIEKPYRANAPRIDLVKPDAWKNITRIDLTTAIGHRESRRAYTKEPLTLEEISFLLWTTQGVRGEVVGSHAYRTVPSAGCRHAFETYLVVLNGKGLDQGVYRYLPLSHQLLFEFSEERLARKIVDAVYRQPYPGNAPVTFIWTAIPYRMEWRYHLAAHKVIAIDAGHVCQNLYLACEAIGAGTCAIAAYDQEALDRLLRIDGKDEFVIYLSPVGKVRNLPEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX97</accession>
    <name>A0A0M2UX97_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH lysR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00784</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000099">
        <property type="protein sequence ID" value="KKO20497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20497">
        <property type="protein sequence ID" value="KKO20497"/>
        <property type="gene ID" value="BROFUL_00784"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.993"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="1">
        <location>
            <begin position="24"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="113" mass="12597" checksum="716F2E422A0D0FDB" modified="2015-11-11" version="1">MNVRCKIWFEKDSSVAFAEGRRMLLEAVDRLGSLNAAAKELGMSYRAAWGKIKATEQVLGIKLLEVTTGGKGGGGATLTAEAKELISKYRKYTDKMTRAMEKEFQRIFQDKNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXJ4</accession>
    <name>A0A0M2UXJ4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02098</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000210">
        <property type="protein sequence ID" value="KKO19189.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19189">
        <property type="protein sequence ID" value="KKO19189"/>
        <property type="gene ID" value="BROFUL_02098"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19189.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="64" mass="7408" checksum="F870466E947E6E68" modified="2015-11-11" version="1">MSIELSLKDLTDAIEHLNQQEQKILLSKLLSLQKISLDDLALLKVAEPSFDFWDNPEDSIYDYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXJ8</accession>
    <name>A0A0M2UXJ8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00464</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000061">
        <property type="protein sequence ID" value="KKO20808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20808">
        <property type="protein sequence ID" value="KKO20808"/>
        <property type="gene ID" value="BROFUL_00464"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="53" mass="5674" checksum="DAF58E58EB86BB12" modified="2015-11-11" version="1">MTGKAGEEGAIVIRAIPEINRALPPVCDMAIEAQAIMFYMMKDGMNFVGAAKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXK4</accession>
    <name>A0A0M2UXK4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Phosphoglycerate mutase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02077</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Carbohydrate degradation.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the BPG-independent phosphoglycerate mutase family. A-PGAM subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000209">
        <property type="protein sequence ID" value="KKO19199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19199">
        <property type="protein sequence ID" value="KKO19199"/>
        <property type="gene ID" value="BROFUL_02077"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2591"/>
    <dbReference type="UniPathway" id="UPA00705"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046537">
        <property type="term" value="F:2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd16011">
        <property type="entry name" value="iPGM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.2130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023665">
        <property type="entry name" value="ApgAM_prokaryotes"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006124">
        <property type="entry name" value="Metalloenzyme"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004456">
        <property type="entry name" value="Pglycerate_mutase_ApgM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042253">
        <property type="entry name" value="Pglycerate_mutase_ApgM_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31209">
        <property type="entry name" value="PTHR31209"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01676">
        <property type="entry name" value="Metalloenzyme"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10143">
        <property type="entry name" value="PhosphMutase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006392">
        <property type="entry name" value="IPGAM_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="SSF53649"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00306">
        <property type="entry name" value="apgM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02535">
        <property type="entry name" value="hyp_Hser_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="5" id="KW-0413">Isomerase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metalloenzyme" evidence="6">
        <location>
            <begin position="2"/>
            <end position="372"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005524"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="388" mass="43156" checksum="707D1CF06DF93D9F" modified="2015-11-11" version="1">MADYPIDKLGGRTPVEAARTPFLDFLAQNGQLGLVRTIPGGFPAGSDVANLTLLGYSPREYYSGRAPLEAASIGIHLNESDWAFRCNFITATEDTLEDFCAGHIKTDEAAIFIKLLNEKLGNDIIQFYTGKSYRHVMVYKGTQKMDARCFPPHDIMGQSIQKHLPKGNGSEILIDLMERSRVYLSNHDINNVRIDLEENPANMIWLWGQGHRPKMPTFKERFHLTGAVITAVDLIKGIACYLGWDIIQVPGATGYLDTNYANKGEYAVKALETHDIVLVHVEAPDEAGHEGNVHEKVLAIEQIDSKIIGPLLEARNRFHELRILVLPDHYTPIVKQTHTPESVPFVAYGTGIEKGIGLPYSETNAQASGLHIKEGHRLIEHLVSGVFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXP0</accession>
    <name>A0A0M2UXP0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02044</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19244">
        <property type="protein sequence ID" value="KKO19244"/>
        <property type="gene ID" value="BROFUL_02044"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2547"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001440">
        <property type="entry name" value="TPR_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00515">
        <property type="entry name" value="TPR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0802">TPR repeat</keyword>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="27"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="61"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="95"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="129"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="196" mass="22172" checksum="BEAFBF884AA6DACB" modified="2015-11-11" version="1">MAYQKIGLANEAIVAYKKVVELDPNDAETRLNLGTLYLKRKMTYEALAMFEKYAVMNPQNAAVFYNLGCLYGEKKLYDKAIAAYRQAVKINPGYDDAYYNLGVVYLDTGRYDEAIGVFQKALTRNPRNHESRYNLAVAYAKKGLYNDAVAACEKLLELDPGNANAHFLLGDTYNKLGKGKEAKEEFDLYKKLIFAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXS3</accession>
    <name>A0A0M2UXS3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4430 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00635</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20652">
        <property type="protein sequence ID" value="KKO20652"/>
        <property type="gene ID" value="BROFUL_00635"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027954">
        <property type="entry name" value="DUF4430"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14478">
        <property type="entry name" value="DUF4430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4430" evidence="1">
        <location>
            <begin position="49"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="129" mass="14826" checksum="7AEECBF583F97804" modified="2015-11-11" version="1">MKRLNWITGIFVFFVFLPIAFCASQKVTVEVDYGGLHQNRKVEIQWKRGITALEALQAVAKVESEYKEEYFLVTSIDNVVGRVGDKVWYYDINGKHATSFANKCILKEGDHVKWKYATDVCSRTIKKGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXU1</accession>
    <name>A0A0M2UXU1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Site-specific tyrosine recombinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">xerD_3</name>
        <name evidence="5" type="ORF">BROFUL_00346</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000044">
        <property type="protein sequence ID" value="KKO20913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20913">
        <property type="protein sequence ID" value="KKO20913"/>
        <property type="gene ID" value="BROFUL_00346"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044068">
        <property type="entry name" value="CB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025269">
        <property type="entry name" value="SAM-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13102">
        <property type="entry name" value="Phage_int_SAM_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51900">
        <property type="entry name" value="CB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Core-binding (CB)" evidence="4">
        <location>
            <begin position="56"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="152"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="177" mass="21140" checksum="90A9D9CE655AED60" modified="2015-11-11" version="1">MYKRDRIWWTCIRYNGKKIQRSLETDNKKLAETIEAKLKTELIEGKYFDRYEGTEKTFREMADRFMKEHAPKVSRNMQESYTTSAKHLLSFFGDSKLTVITPKVINDYKVSRINQGKKPATINKELAMLQKAFSLAVKQWEWTKENPCLKIPKERENNQRDRWLSEDEEKRQLENAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXW8</accession>
    <name>A0A0M2UXW8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00585</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000081">
        <property type="protein sequence ID" value="KKO20697.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20697">
        <property type="protein sequence ID" value="KKO20697"/>
        <property type="gene ID" value="BROFUL_00585"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20697.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="184" mass="19571" checksum="EB79FF958FF2D5F9" modified="2015-11-11" version="1" fragment="single">MTVDKKSRTAPSLLSAMVFILAVFIITLFGSGVTYGLNHSGNIGSNETWYAADNPHVVTASIQVHNNATLTIEPGCVVRFFPGTTLYFGYSSGAALKAVGTSVNPITFTSNAASPAPGDWRGILFFNHTDDAETIMDYCTVEYGGNGGENSNIFCTEASPTIQNCTMRYSDGYAMSFGSNDLDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXX7</accession>
    <name>A0A0M2UXX7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Potassium transporter protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_01462</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000150">
        <property type="protein sequence ID" value="KKO19821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19821">
        <property type="protein sequence ID" value="KKO19821"/>
        <property type="gene ID" value="BROFUL_01462"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1807"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015379">
        <property type="term" value="F:potassium:chloride symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003445">
        <property type="entry name" value="Cat_transpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004772">
        <property type="entry name" value="TrkH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02386">
        <property type="entry name" value="TrkH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006247">
        <property type="entry name" value="TrkH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0406">Ion transport</keyword>
    <keyword evidence="8 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0630">Potassium</keyword>
    <keyword evidence="4" id="KW-0633">Potassium transport</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="37"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="70"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="128"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="183"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="235"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="274"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="314"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="345"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="408"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="467"/>
            <end position="488"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="111"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="112"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="328"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="444"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR006247-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO19821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="494" mass="54708" checksum="8FC1193C406829E7" modified="2015-11-11" version="1">MNLSVVLYTVSNLVLMLAAILLIPFGVACYYNDDAAMWAFIYAIIITGILGGLSKAFFRKKDAEISIRESIAIVTFSWIVCIFLGALPFWLSGVCTTYCDAVFETTSGFTTTGASIFKDVEILPRSILFWRAFTCWLGGMGIIVIFVALLPALGISGYQLFSAEVSGPTADRLKPRIGETAKLLWLIYLIITAAMVLALFCGRMPLFDAICHTFSTVSTAGFSTKNTSIAFYNNLYVEITVATFMFICGCNFSLYYQCFQKEFKKVFRNSELKFFSGVILTAIIFVAITLYFSRPEFFNGGIKDNRYCDLGNSFRYAFFQIITVCTGTGHASANFDQWPNACRFLLVLLMFIGACAGSTGGAIKCVRILLLLKSSFRELTRILRPRMVKHVKLNGESVSEEIITESSVFFVVYLGCFGISSMALMTMNTDIITAFSAVATCMANCGPGLAKVGPMANFSDVAYAGKWVLSFCMLLGRLEIYSLILLFLPMTWKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY12</accession>
    <name>A0A0M2UY12_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Bifunctional chorismate mutase/prephenate dehydratase</fullName>
            <ecNumber evidence="7">4.2.1.51</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="17">Chorismate mutase-prephenate dehydratase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="16">p-protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="22" type="ORF">BROFUL_00811</name>
    </gene>
    <organism evidence="22 23">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="22 23" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="22">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the Claisen rearrangement of chorismate to prephenate and the decarboxylation/dehydration of prephenate to phenylpyruvate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>H(+) + prephenate = 3-phenylpyruvate + CO2 + H2O</text>
            <dbReference type="Rhea" id="RHEA:21648"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:18005"/>
            <dbReference type="ChEBI" id="CHEBI:29934"/>
            <dbReference type="EC" id="4.2.1.51"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>chorismate = prephenate</text>
            <dbReference type="Rhea" id="RHEA:13897"/>
            <dbReference type="ChEBI" id="CHEBI:29748"/>
            <dbReference type="ChEBI" id="CHEBI:29934"/>
            <dbReference type="EC" id="5.4.99.5"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Amino-acid biosynthesis; L-phenylalanine biosynthesis; phenylpyruvate from prephenate: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Metabolic intermediate biosynthesis; prephenate biosynthesis; prephenate from chorismate: step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="22">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.51" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000103">
        <property type="protein sequence ID" value="KKO20455.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20455">
        <property type="protein sequence ID" value="KKO20455"/>
        <property type="gene ID" value="BROFUL_00811"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1027"/>
    <dbReference type="UniPathway" id="UPA00120">
        <property type="reaction ID" value="UER00203"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00121">
        <property type="reaction ID" value="UER00345"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004106">
        <property type="term" value="F:chorismate mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004664">
        <property type="term" value="F:prephenate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046417">
        <property type="term" value="P:chorismate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009094">
        <property type="term" value="P:L-phenylalanine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.59.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008242">
        <property type="entry name" value="Chor_mutase/pphenate_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036263">
        <property type="entry name" value="Chorismate_II_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036979">
        <property type="entry name" value="CM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002701">
        <property type="entry name" value="CM_II_prokaryot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010957">
        <property type="entry name" value="G/b/e-P-prot_chorismate_mutase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001086">
        <property type="entry name" value="Preph_deHydtase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01817">
        <property type="entry name" value="CM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00800">
        <property type="entry name" value="PDT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001500">
        <property type="entry name" value="Chor_mut_pdt_Ppr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00830">
        <property type="entry name" value="CM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48600">
        <property type="entry name" value="SSF48600"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01807">
        <property type="entry name" value="CM_P2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51168">
        <property type="entry name" value="CHORISMATE_MUT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51171">
        <property type="entry name" value="PREPHENATE_DEHYDR_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="10" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="11" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="13" id="KW-0413">Isomerase</keyword>
    <keyword evidence="14" id="KW-0456">Lyase</keyword>
    <keyword evidence="15" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="12" id="KW-0584">Phenylalanine biosynthesis</keyword>
    <keyword evidence="23" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Chorismate mutase" evidence="19">
        <location>
            <begin position="1"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="domain" description="Prephenate dehydratase" evidence="20">
        <location>
            <begin position="87"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="domain" description="ACT" evidence="21">
        <location>
            <begin position="280"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="site" description="Essential for prephenate dehydratase activity" evidence="18">
        <location>
            <position position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00002364"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00004741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00004817"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00013147"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00014401"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023222"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00031175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00031520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="PIRSR" id="PIRSR001500-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="PROSITE" id="PS51168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="20">
        <source>
            <dbReference type="PROSITE" id="PS51171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="21">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="22">
        <source>
            <dbReference type="EMBL" id="KKO20455.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="23">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="360" mass="40614" checksum="4E1583D499BC3E4C" modified="2015-11-11" version="1">MDIAQLRKEIDTLDSKIVELLNERAKIVLKIGEIKKQNRAQVYVPNREREVYLRITSQNKGPLANDCLVAIYRELMAGSLVLEKAIKVAYLGPEGTFSYFAARQKFGLSVEYVPLRSIDDVFRDVATGRSDYGIVPVENSTEGGIRETLNLFVEFDVKVCAEIVFPIHHSLMANCKKEEIKKVYSKVQILSQCRNWLACNLPHAELVEVSSSAEAARIFEKALQPAAGGQYCAIIANAEIAQQYGVTILFSNIEDNPNNVTRFFVLSKEYGAPSEKDRTAVMCYTKNRPGALLEILEPFRTYNINLTNIESLPTRKKAWEYCFYLDFEGHVAHASVQKALDEVFKKCSDMKILGSFPKCD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY17</accession>
    <name>A0A0M2UY17_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphopantothenoylcysteine</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00816</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000103">
        <property type="protein sequence ID" value="KKO20460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20460">
        <property type="protein sequence ID" value="KKO20460"/>
        <property type="gene ID" value="BROFUL_00816"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1032"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1950">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036551">
        <property type="entry name" value="Flavin_trans-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003382">
        <property type="entry name" value="Flavoprotein"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02441">
        <property type="entry name" value="Flavoprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52507">
        <property type="entry name" value="SSF52507"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavoprotein" evidence="1">
        <location>
            <begin position="6"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="185" mass="20146" checksum="AE8870A8636CAF59" modified="2015-11-11" version="1">MIMSYHIVLGVTGSIAAYKAVELVSCLTKQGNDVVVIMTSAAQRFVHPVTFRSISHNRVVTDLFIDNENYDPNHVSLAEQADLLVVAPATANFIGKVASGIADDALTCTVMAARSPVIIAPAMNDSMYLNPIVQENIKKLTRHGYRIIEPEEGRLCTGRVGKGRLAAVEKIVGVIAEELNKMRKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYA8</accession>
    <name>A0A0M2UYA8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01343</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000139">
        <property type="protein sequence ID" value="KKO19951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19951">
        <property type="protein sequence ID" value="KKO19951"/>
        <property type="gene ID" value="BROFUL_01343"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="741" mass="84023" checksum="D4991FB9C8DECAAD" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYB5</accession>
    <name>A0A0M2UYB5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01808</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000189">
        <property type="protein sequence ID" value="KKO19469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19469">
        <property type="protein sequence ID" value="KKO19469"/>
        <property type="gene ID" value="BROFUL_01808"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="40" mass="4349" checksum="BC37E1B73718A360" modified="2015-11-11" version="1">MKNLYHWGFAGIVCSAMIGFATPIFAEEAMPLSATSEEAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYB6</accession>
    <name>A0A0M2UYB6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">UDP-3-O-acyl-N-acetylglucosamine deacetylase</fullName>
            <ecNumber evidence="4">3.5.1.108</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">BROFUL_00683</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the hydrolysis of UDP-3-O-myristoyl-N-acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>a UDP-3-O-[(3R)-3-hydroxyacyl]-N-acetyl-alpha-D-glucosamine + H2O = a UDP-3-O-[(3R)-3-hydroxyacyl]-alpha-D-glucosamine + acetate</text>
            <dbReference type="Rhea" id="RHEA:67816"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:30089"/>
            <dbReference type="ChEBI" id="CHEBI:137740"/>
            <dbReference type="ChEBI" id="CHEBI:173225"/>
            <dbReference type="EC" id="3.5.1.108"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Glycolipid biosynthesis; lipid IV(A) biosynthesis; lipid IV(A) from (3R)-3-hydroxytetradecanoyl-[acyl-carrier-protein] and UDP-N-acetyl-alpha-D-glucosamine: step 2/6.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.108" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20565.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20565">
        <property type="protein sequence ID" value="KKO20565"/>
        <property type="gene ID" value="BROFUL_00683"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.870"/>
    <dbReference type="UniPathway" id="UPA00359">
        <property type="reaction ID" value="UER00478"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008759">
        <property type="term" value="F:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0103117">
        <property type="term" value="F:UDP-3-O-acyl-N-acetylglucosamine deacetylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009245">
        <property type="term" value="P:lipid A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1700.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004463">
        <property type="entry name" value="UDP-acyl_GlcNac_deAcase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011334">
        <property type="entry name" value="UDP-acyl_GlcNac_deAcase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015870">
        <property type="entry name" value="UDP-acyl_N-AcGlcN_deAcase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33694">
        <property type="entry name" value="PTHR33694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03331">
        <property type="entry name" value="LpxC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0441">Lipid A biosynthesis</keyword>
    <keyword evidence="5" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="10" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002923"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00024535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO20565.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="247" mass="27276" checksum="595BE52E961182A9" modified="2015-11-11" version="1">MVSTQKTIGQEIECFGIGMFRGENTTLRFRPAPLNSGISFIRVDLPNRPSIPAHVNSLSSNYRRIFLKHQDAEVECIEHLMAALAGLGIDNVEIEITGREVPAGDGSAQFFVDILKKAGIVDLGGAKKIFVVTKSLAVKSENASILAVPCEKGLVLSYTLDFKGPFLPQQTYDITFTEESFCREIAPARTFGLSTYIEEFRQLGLGKGVTDENSVIVHEDGTMTKPISMKPAELRFPNDWYGIKSWI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYE5</accession>
    <name>A0A0M2UYE5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two-component sensor kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01265</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO19996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19996">
        <property type="protein sequence ID" value="KKO19996"/>
        <property type="gene ID" value="BROFUL_01265"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001610">
        <property type="entry name" value="PAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013655">
        <property type="entry name" value="PAS_fold_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13185">
        <property type="entry name" value="GAF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08447">
        <property type="entry name" value="PAS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00065">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00086">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PAS" evidence="3">
        <location>
            <begin position="162"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="4">
        <location>
            <begin position="239"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="2">
        <location>
            <begin position="294"/>
            <end position="512"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="514" mass="58410" checksum="4B5342ECA5E2F033" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYI3</accession>
    <name>A0A0M2UYI3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_00628</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the ExbD/TolR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20645">
        <property type="protein sequence ID" value="KKO20645"/>
        <property type="gene ID" value="BROFUL_00628"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.794"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003400">
        <property type="entry name" value="ExbD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30558">
        <property type="entry name" value="PTHR30558"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02472">
        <property type="entry name" value="ExbD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0653">Protein transport</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="16"/>
            <end position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005811"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="140" mass="15329" checksum="B2C979ECFF8E937C" modified="2015-11-11" version="1">MKIPLPATRRRARIEIIPLIDVIFFLLATFVVVSLSMVKNQGISVNLPSAVTGNPQEREAAVTITVTKSGDVYLNQEKLAPGLLSGRLKQLKTENPDTRVFINGDREAYFGAAIQILDEVRSSGITKVAIQTKLGEPLQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYT0</accession>
    <name>A0A0M2UYT0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ATPase involved in chromosome partitioning</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">parA_2</name>
        <name evidence="2" type="ORF">BROFUL_00497</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000069">
        <property type="protein sequence ID" value="KKO20770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20770">
        <property type="protein sequence ID" value="KKO20770"/>
        <property type="gene ID" value="BROFUL_00497"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.624"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025669">
        <property type="entry name" value="AAA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13614">
        <property type="entry name" value="AAA_31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_31" evidence="1">
        <location>
            <begin position="3"/>
            <end position="244"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="340" mass="38467" checksum="255DDF2DA5B19D00" modified="2015-11-11" version="1">MAKVVSFINYKGGVGKTTTTYHIGCALALFHSKKVLLIDVDPQANLTFLCAVYHRWELFKKDNGTIANLFASYFRDSFDPCQIKNIIWKSPIELSTEGKATNDVVKNLDLIPSDIDLLGVDLELASKTWRKIESGFYQEQLQILRRTIKGLKELFCIDTSDDMRDALFYLEQRHILKNAIHGIKDNYDYILIDCPPNLYLVTQNALAASDAYVITTIPDHMSTIGINILIRKIRELHDMMNHKCRLTNAEMHGINHQGILFAMVRTAGQSIVSTHKDKITGLRKDYGNACFESFISWGAGYTEASAMAVPVFLLNDENAMRVAGQYKEVTKEFLEKVNDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYZ0</accession>
    <name>A0A0M2UYZ0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00425</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000057">
        <property type="protein sequence ID" value="KKO20840.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20840">
        <property type="protein sequence ID" value="KKO20840"/>
        <property type="gene ID" value="BROFUL_00425"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20840.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="60" mass="6947" checksum="CCA4E833234D3310" modified="2015-11-11" version="1">MPFYHDDGSEINPDLVPKPSLCVTCRRNDDPGEEILCILTRADQQEQSEFQCFAYTPRKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZJ1</accession>
    <name>A0A0M2UZJ1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00902</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000109">
        <property type="protein sequence ID" value="KKO20381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20381">
        <property type="protein sequence ID" value="KKO20381"/>
        <property type="gene ID" value="BROFUL_00902"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Methyltransf_11" evidence="1">
        <location>
            <begin position="11"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="141" mass="15929" checksum="0D5CD136BBA97585" modified="2015-11-11" version="1">MKKGINVSACDINLEPLPYPDNSFDCITLIAVIEHLIDPYHSLKEITRVLKTGGTLIIGTPNVASFSNRIKLLLGKRPRTSFDAGWDGGHLLYFTPKELELLLTQHRFKIASRQATGNLQLLRKLFFNLTGEFIFQCVLEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZP2</accession>
    <name>A0A0M2UZP2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Zn_Tnp_IS91 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01312</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000138">
        <property type="protein sequence ID" value="KKO19964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19964">
        <property type="protein sequence ID" value="KKO19964"/>
        <property type="gene ID" value="BROFUL_01312"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007069">
        <property type="entry name" value="Transposase_32"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026889">
        <property type="entry name" value="Zn_Tnp"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04986">
        <property type="entry name" value="Y2_Tnp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14319">
        <property type="entry name" value="Zn_Tnp_IS91"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Zn_Tnp_IS91" evidence="1">
        <location>
            <begin position="15"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14319"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="352" mass="41669" checksum="B24DC6438AD19C3D" modified="2015-11-11" version="1">MKAEPVKGWNVFKQIFSEHWEGFKRKYPRYSKQCYDEQVKKMLQCGNPEEMGYRRYLCFCCGEGNRVVSMSCKSAMCLRCGKVYVNEWVSQVSKMLHEGIIYRHIVLTVPERLRKTFYNHTEELLGKLMSGGVKCLDEFFSRVSRKEIRGRYIVVLQTHGRNGQYNPHLHIIATSGGMDKNSRRWEHLEYLPYPMLHKKWQWYLLEMVREGIDTEEIEELVDSCYRSYPKGFVANVQKGEVPGRYESLARYLAKYVVSPPISIRRIDGYDGETVRYHYRSYKTEQVEEERVDVYTFIGRMIQHALPKGFKRIRYYGVQATKTFEQVQEIIREVLSKVKRVLKGAVKIYSRCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZQ0</accession>
    <name>A0A0M2UZQ0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00826</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000104">
        <property type="protein sequence ID" value="KKO20441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20441">
        <property type="protein sequence ID" value="KKO20441"/>
        <property type="gene ID" value="BROFUL_00826"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018771">
        <property type="entry name" value="PocR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025662">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025943">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025944">
        <property type="entry name" value="Sigma_54_int_dom_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10114">
        <property type="entry name" value="PocR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00158">
        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00675">
        <property type="entry name" value="SIGMA54_INTERACT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00676">
        <property type="entry name" value="SIGMA54_INTERACT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00688">
        <property type="entry name" value="SIGMA54_INTERACT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="2">
        <location>
            <begin position="198"/>
            <end position="427"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="470" mass="54314" checksum="BB4733A5E014500F" modified="2015-11-11" version="1">MIDWIKIAESHVIRTFRKISYAWWGIDIQFYDEYDACKNYRTFFQNPVCSVIHSIPKGIKLCAQTYQKELKKCRKSQTPFFYQCFAGLQGFAVPVPVQQKYVGVMIGSGIRSLKDDDPIQKRYRETLMELGFDSMELDQCYRNMKTIDQHKKEYISDFVKHVAEDVAAFYEYLQEKNETTKKRLFLLEGNYKEKYRRIIGASPAIRQVFDTLELIERSESPVLIEGESGTGKELIAAAIHYNSPCKDKTFVIQNCSAFSDTLLNSELFGHEKGSFTGAVSDKKGLFEVADKGTLFLDEIGDMNIEIQAKLLRVLEDGSFYRVGGTEQKKAKVRIIAATNRSLKGLIEQGLFRKDLFYRINTIHLTLPPLRERREDILPLANYFLDYYAIARKEPRKEIGREVRELLLVYRWPGNVRELKNLMERLILLSGASEVIEITHIPKEILADAYNGLQTHNHATTSQTQRCPQYP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZS1</accession>
    <name>A0A0M2UZS1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00802</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000102">
        <property type="protein sequence ID" value="KKO20471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20471">
        <property type="protein sequence ID" value="KKO20471"/>
        <property type="gene ID" value="BROFUL_00802"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="69"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="98"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="193"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1002"/>
            <end position="1028"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="620"/>
            <end position="670"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="739"/>
            <end position="784"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1002"/>
            <end position="1016"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1154" mass="131748" checksum="1232BA0F1E913120" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZT1</accession>
    <name>A0A0M2UZT1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nitroreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01263</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO19994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19994">
        <property type="protein sequence ID" value="KKO19994"/>
        <property type="gene ID" value="BROFUL_01263"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.109.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029479">
        <property type="entry name" value="Nitroreductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000415">
        <property type="entry name" value="Nitroreductase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00881">
        <property type="entry name" value="Nitroreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55469">
        <property type="entry name" value="SSF55469"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nitroreductase" evidence="1">
        <location>
            <begin position="7"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="210" mass="23883" checksum="339177CFF160CC0F" modified="2015-11-11" version="1">MDVKEAIQKRRSIRRFKSDPVPEDLILQLLESARLAPSGSNTQPWKFIVVKDAETRKKLQSASYHQRHVGQAPVIIACCADIKAFEKFPERIDELIDAGALPAKTREVFVPSLKKEGISADMKWHLLIAATGNTDIAIEHMVLHAVELGLGTCWVRWFDDHKVKEILEIPSNIEIIALLPLGYPAEEPPQRPRFTLEKMVYYEKYGNQTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZW4</accession>
    <name>A0A0M2UZW4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Stf0 sulfotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00768</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000098">
        <property type="protein sequence ID" value="KKO20501.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20501">
        <property type="protein sequence ID" value="KKO20501"/>
        <property type="gene ID" value="BROFUL_00768"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20501.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="397" mass="47028" checksum="F8614A4A92C8D919" modified="2015-11-11" version="1" fragment="single">KETTLQRKIRLSSLVYLGISQLVNFHLINQIKKYCNEYVECITRQGLPHLLVNRFTGEPITVEDPWGGSWSKNWYYPSPGMHREAATALEQVCKKYLNPIEFHQQSKPSFVSGKWLFKKTIIDEKYIYLRNLCCFHLKNVALDLGILGGHTDYCRFIILGRARSGSNFLRGLLNSHQQIITFGELFRAYDSIGWEFPDYDQYLQSRSLRSFMQNDPGKFLEERVFKKFPKRILAVGFKLFYYHAQDDSRKIIWPYLKDQKDIKIIHLQRNNTLRVLLSLKKAFQTDKWTNITGEEETSSILLDYEECLREFTWSQEVKKQYGDYFEGHHKIDVSYENLSNYCEDEIKRIQAFLGVQYEIVKPSTFKQSNQPLSKSISNYFELKEKFKGTSWEKFFEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZX6</accession>
    <name>A0A0M2UZX6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative CoA enzyme activase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00141</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000016">
        <property type="protein sequence ID" value="KKO21140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21140">
        <property type="protein sequence ID" value="KKO21140"/>
        <property type="gene ID" value="BROFUL_00141"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.177"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002731">
        <property type="entry name" value="ATPase_BadF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018709">
        <property type="entry name" value="CoA_activase_DUF2229"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008275">
        <property type="entry name" value="CoA_E_activase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01869">
        <property type="entry name" value="BcrAD_BadFG"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09989">
        <property type="entry name" value="DUF2229"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00241">
        <property type="entry name" value="CoA_E_activ"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BcrAD_BadFG" evidence="3">
        <location>
            <begin position="7"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="domain" description="BcrAD_BadFG" evidence="3">
        <location>
            <begin position="322"/>
            <end position="574"/>
        </location>
    </feature>
    <feature type="domain" description="DUF2229" evidence="4">
        <location>
            <begin position="670"/>
            <end position="887"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01869"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF09989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO21140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1424" mass="159316" checksum="C0266FF04D3324A4" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V034</accession>
    <name>A0A0M2V034_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 9">2-oxoisovalerate dehydrogenase subunit alpha</fullName>
            <ecNumber evidence="4 9">1.2.4.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7 9">Branched-chain alpha-keto acid dehydrogenase E1 component alpha chain</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">pdhA</name>
        <name evidence="11" type="ORF">BROFUL_00054</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 9">The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8 9">
            <text>(R)-N(6)-lipoyl-L-lysyl-[dihydrolipoyllysine-residue (2-methylpropanoyl)transferase] + 3-methyl-2-oxobutanoate + H(+) = (R)-N(6)-(S(8)-2-methylpropanoyldihydrolipoyl)-L-lysyl-[dihydrolipoyllysine-residue (2-methylpropanoyl)transferase] + CO2</text>
            <dbReference type="Rhea" id="RHEA:13457"/>
            <dbReference type="Rhea" id="RHEA-COMP:10488"/>
            <dbReference type="Rhea" id="RHEA-COMP:10489"/>
            <dbReference type="ChEBI" id="CHEBI:11851"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:83099"/>
            <dbReference type="ChEBI" id="CHEBI:83142"/>
            <dbReference type="EC" id="1.2.4.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 9">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the BCKDHA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.2.4.4" evidence="4 9"/>
    <dbReference type="EMBL" id="LAQJ01000007">
        <property type="protein sequence ID" value="KKO21215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21215">
        <property type="protein sequence ID" value="KKO21215"/>
        <property type="gene ID" value="BROFUL_00054"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.67"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003863">
        <property type="term" value="F:3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009083">
        <property type="term" value="P:branched-chain amino acid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034616">
        <property type="entry name" value="BCKDH_E1-a"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001017">
        <property type="entry name" value="DH_E1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43380:SF1">
        <property type="entry name" value="PTHR43380:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00676">
        <property type="entry name" value="E1_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9 11" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0786">Thiamine pyrophosphate</keyword>
    <feature type="domain" description="E1_dh" evidence="10">
        <location>
            <begin position="6"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008646"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00031050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00033712"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU365014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO21215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="289" mass="31987" checksum="EF10789B5FCE818F" modified="2015-11-11" version="1">MDKQRHRAVSVGYGYALEKNDIAAPYFRDMGVFLIRGITAKRIMAQYFGKKTGVTGGKEGNVHVGDLNYGVFGFPSHLADNYPIGAGAALAFKIRGEKRVAVACTGDGGTSRGDFHEGMNIAAVRKLPIVFICNNNQYAYSTPLKLQMAIKDVAERALAYGIPSRIVDGNNVVEVYTAAKEAYEIARNGGGPAFIECKTMRMHGHSEHDSAKYVPRELLEEWKKKDPLLHMETYLMKNHISEKEELDSIDLQAKKEIEEAEAFAEESPYPEPGDVLRGVYATSIEEEMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V050</accession>
    <name>A0A0M2V050_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">FAD-dependent pyridine nucleotide-disulfide oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00030</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000006">
        <property type="protein sequence ID" value="KKO21235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21235">
        <property type="protein sequence ID" value="KKO21235"/>
        <property type="gene ID" value="BROFUL_00030"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016156">
        <property type="entry name" value="FAD/NAD-linked_Rdtase_dimer_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="44" mass="4966" checksum="996E6B5C3E0184FE" modified="2015-11-11" version="1">MGAILLGDNKSAHDLAQLMEKKIDISSYKEEILEPDFDFKGLLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V080</accession>
    <name>A0A0M2V080_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Radical SAM core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00647</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000087">
        <property type="protein sequence ID" value="KKO20611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20611">
        <property type="protein sequence ID" value="KKO20611"/>
        <property type="gene ID" value="BROFUL_00647"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025274">
        <property type="entry name" value="DUF4070"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034530">
        <property type="entry name" value="HpnP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13282">
        <property type="entry name" value="DUF4070"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00303">
        <property type="entry name" value="hopanoid_C2-methyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Radical SAM core" evidence="1">
        <location>
            <begin position="159"/>
            <end position="391"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="499" mass="57483" checksum="CAB2F7D860275FDA" modified="2015-11-11" version="1">MNVLLIYPEFPDTFWSFKHALKFVRKKASFPPLGLLTVAAMLPTEWAKRLVDLNVTPLKEKDLAWADYAFISGMIVQRKSACQIIARCKKAGVKIVAGGPLFTSEYEQFADVDHFVLNEAEVTLPPFLEDLSREKARRVYMTTEFADIRKTPVPLWELADLNRYISMSIQYSRGCPYHCEFCNVTALFGHRPRTKTAAQITAELDRFYSLGWRGSIFFVDDNLIGNKTSIKTGLLPELIRWQQEHVAMSFHTEVSINLADDVPLMQMMVEAGFETVFVGIETPDEDGLAECGKKQNKNRDLIEDVRRIQRAGLQVQGGFVVGFDSDTPSIFQRQIEFIQKSGIVTAMIGLLQAPPGTRLYERLRKENRLLGQISGDNVDGTTNIIPSMNIDTLQEGYKNILRCVYSPEHYYQRIKTFFREYKPKKTDAPLDVRRLLVLFRSIFYLGILGKERVYYWKLFVWTYFHHPRLFPLAMSLAICGYHFRKVCELHVFSRKKCDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0C9</accession>
    <name>A0A0M2V0C9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01032</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20184">
        <property type="protein sequence ID" value="KKO20184"/>
        <property type="gene ID" value="BROFUL_01032"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="87" mass="9890" checksum="5293F27EBEEAB292" modified="2015-11-11" version="1">MSESFSNKEVGEKYKAVISSVKCPNCDGEAVSVMVKTLKMPWMVKCFSCGYSDVIMWIEKQVMDALKNVKVFNQIWKDGESIEITLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0G8</accession>
    <name>A0A0M2V0G8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Cell shape determining protein MreD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_00604</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the MreD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000083">
        <property type="protein sequence ID" value="KKO20676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20676">
        <property type="protein sequence ID" value="KKO20676"/>
        <property type="gene ID" value="BROFUL_00604"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007227">
        <property type="entry name" value="Cell_shape_determining_MreD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04093">
        <property type="entry name" value="MreD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03426">
        <property type="entry name" value="shape_MreD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0133">Cell shape</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="49"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="78"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="109"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="146" mass="16851" checksum="29738A5351359588" modified="2015-11-11" version="1">MSWINLGSAAPDLYFPFVVFYAFLTDVKRNTLANWLTGISKDLLSEGSFGINSVFFVAIGFFLWSFREILFRGHVVTQILITFIFSVIYNIVYTIHLEISFHSLCLAPTLRMILCCSFYTAMVVPALFWIFNKFQPTQKLFFIKGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0I7</accession>
    <name>A0A0M2V0I7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00584</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000081">
        <property type="protein sequence ID" value="KKO20696.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20696">
        <property type="protein sequence ID" value="KKO20696"/>
        <property type="gene ID" value="BROFUL_00584"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20696.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="93" mass="10615" checksum="AC68CDC0D74520C1" modified="2015-11-11" version="1">MCTIPCRGRFETCPYKTILFIAQHSRNQIPVVKAGDCFGQDPRTDADSVLDDMRALFSRRLSDWSTRNDAGYAFDEIRYVVIASEAKQSLSYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V164</accession>
    <name>A0A0M2V164_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Guanylate kinase</fullName>
            <ecNumber evidence="3">2.7.4.8</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">gmk</name>
        <name evidence="3" type="ORF">BROFUL_00815</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.8" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000103">
        <property type="protein sequence ID" value="KKO20459.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20459">
        <property type="protein sequence ID" value="KKO20459"/>
        <property type="gene ID" value="BROFUL_00815"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1031"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004385">
        <property type="term" value="F:guanylate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008145">
        <property type="entry name" value="GK/Ca_channel_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008144">
        <property type="entry name" value="Guanylate_kin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00625">
        <property type="entry name" value="Guanylate_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00072">
        <property type="entry name" value="GuKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50052">
        <property type="entry name" value="GUANYLATE_KINASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Guanylate kinase-like" evidence="2">
        <location>
            <begin position="20"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20459.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="163" mass="18881" checksum="88E0685D3054E011" modified="2015-11-11" version="1">MSSAYKRPAHQEVNISHDSPPRYNEKNGEAYHFVSKQEFEEMIRKDELAEHAEYCGCSYGTPIKALKEAIASEGFYLLEIEVQGALQIMEKFPETISIFLLPPDKKTLSQRLVQRNTNREQDMELRLKIADKELEYKDRYNHCVVNDDLAVTATTIRKILNLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1H0</accession>
    <name>A0A0M2V1H0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00274</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000032">
        <property type="protein sequence ID" value="KKO20991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20991">
        <property type="protein sequence ID" value="KKO20991"/>
        <property type="gene ID" value="BROFUL_00274"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006675">
        <property type="entry name" value="HDIG_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01966">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00277">
        <property type="entry name" value="HDIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51831">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HD" evidence="1">
        <location>
            <begin position="1"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="202" mass="22891" checksum="83F9A4BAE263BF4F" modified="2015-11-11" version="1">MHTLLCLSKLVPLAEQGLDRPSFTLAMGVLLHDIGKTVTFEESDRIRFNLHEKVGADMAARICDRLKLSHAEKERVVWLVLKHLYFKDAQKMRLNKLKRLFANEGYPELAELCRIDALASSGDLSDYHFCQEMFNKLSHEEVKPKPLITGHDLIAMGLKPGPLFKDILTKIEDVQLDGNITTKEAAIEEAKALISQMNTIHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1T2</accession>
    <name>A0A0M2V1T2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ResIII domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00637</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20654">
        <property type="protein sequence ID" value="KKO20654"/>
        <property type="gene ID" value="BROFUL_00637"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.806"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006935">
        <property type="entry name" value="Helicase/UvrB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04851">
        <property type="entry name" value="ResIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ResIII" evidence="1">
        <location>
            <begin position="59"/>
            <end position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="973" mass="112092" checksum="4089F418602B17AF" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2F4</accession>
    <name>A0A0M2V2F4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Bacterial Ig-like domain (Group 1)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00387</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the intimin/invasin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000050">
        <property type="protein sequence ID" value="KKO20884.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20884">
        <property type="protein sequence ID" value="KKO20884"/>
        <property type="gene ID" value="BROFUL_00387"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039448">
        <property type="entry name" value="Beta_helix"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003344">
        <property type="entry name" value="Big_1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008964">
        <property type="entry name" value="Invasin/intimin_cell_adhesion"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006626">
        <property type="entry name" value="PbH1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13229">
        <property type="entry name" value="Beta_helix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02369">
        <property type="entry name" value="Big_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00634">
        <property type="entry name" value="BID_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00710">
        <property type="entry name" value="PbH1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49373">
        <property type="entry name" value="SSF49373"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="SSF51126"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51127">
        <property type="entry name" value="BIG1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Big-1" evidence="3">
        <location>
            <begin position="171"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="255"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="267"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="333"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20884.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="333" mass="34603" checksum="FF7CB52426B8AC34" modified="2015-11-11" version="1" fragment="single">DGTSGNPITFTSNGATPAPGDWEGIVFYNSTDDASTILDYCTVEYGGYDTYNSNINCNQASPTIQRCLIRNSDGYGIHTTGSGAQPLISCSTITDNTHGVYVASGNPTIENCSIAGNTSYGVFTNTFIYAENNWWGNASGPSGVGPGSGDAVSSDVDYTPWLSAYNSCLETIVLSPSSETNLIGTQHTVTATVTDDASDPMEGIVLFFYITSGPHAGLNSNVTTDSNGQATFTYTGTLEGTDIIEASFTDFHGRTITSGPVTKTWESLPPTPTPTPSPTPTPEPTPSPTPSPTPEPTPSPTPSPTPSPTPSPTPTPAACPCPDAEACYSFDEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2Q2</accession>
    <name>A0A0M2V2Q2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 6">ATP-dependent DNA helicase RecG</fullName>
            <ecNumber evidence="3 6">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">recG</name>
        <name evidence="9" type="ORF">BROFUL_00309</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the helicase family. RecG subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="3 6"/>
    <dbReference type="EMBL" id="LAQJ01000035">
        <property type="protein sequence ID" value="KKO20974.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20974">
        <property type="protein sequence ID" value="KKO20974"/>
        <property type="gene ID" value="BROFUL_00309"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.378"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004609">
        <property type="entry name" value="ATP-dep_DNA_helicase_RecG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045562">
        <property type="entry name" value="RecG_dom3_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033454">
        <property type="entry name" value="RecG_wedge"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19833">
        <property type="entry name" value="RecG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17191">
        <property type="entry name" value="RecG_wedge"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00643">
        <property type="entry name" value="recG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5 6" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="6" id="KW-0234">DNA repair</keyword>
    <keyword evidence="6 9" id="KW-0347">Helicase</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="7">
        <location>
            <begin position="286"/>
            <end position="447"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="8">
        <location>
            <begin position="456"/>
            <end position="626"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00017846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20974.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="698" mass="78932" checksum="B7346B6744EE6CF1" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2Z4</accession>
    <name>A0A0M2V2Z4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glyoxalase-like domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00210</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000026">
        <property type="protein sequence ID" value="KKO21054.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21054">
        <property type="protein sequence ID" value="KKO21054"/>
        <property type="gene ID" value="BROFUL_00210"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025870">
        <property type="entry name" value="Glyoxalase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12681">
        <property type="entry name" value="Glyoxalase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="6"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21054.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="119" mass="13804" checksum="CC75C8D69A0024D7" modified="2015-11-11" version="1">MKKAVRVINTIVYCRRWQETVSFYRHRLGFPVTFENDWFVEFEVTAHVRISIANDQRATVKSSAGQGLTLAFQVEQADEMWQVLKARGIEVGNIKDHPWGGRAFFLFDPEGNRLEVWSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V340</accession>
    <name>A0A0M2V340_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00176</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000018">
        <property type="protein sequence ID" value="KKO21094.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21094">
        <property type="protein sequence ID" value="KKO21094"/>
        <property type="gene ID" value="BROFUL_00176"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21094.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="67" mass="7918" checksum="AB025FEFCF305BB1" modified="2015-11-11" version="1">MQESFKMAFNFRSLISRNKHYNSLLELSDILSNHFDKKRFIFQISALKFATLALKATFDRLACQRLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V388</accession>
    <name>A0A0M2V388_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00130</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000016">
        <property type="protein sequence ID" value="KKO21129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21129">
        <property type="protein sequence ID" value="KKO21129"/>
        <property type="gene ID" value="BROFUL_00130"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="30" mass="3360" checksum="196F358901EFC9C6" modified="2015-11-11" version="1">MILAIIIISLAPAVVEYVKHRRAKARIISN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V3A7</accession>
    <name>A0A0M2V3A7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Carbamoyl-phosphate synthase small chain</fullName>
            <ecNumber evidence="2">6.3.5.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Carbamoyl-phosphate synthetase glutamine chain</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">carA</name>
        <name evidence="4" type="ORF">BROFUL_00110</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>2 ATP + H2O + hydrogencarbonate + L-glutamine = 2 ADP + carbamoyl phosphate + 2 H(+) + L-glutamate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:18633"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.5.5"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-arginine biosynthesis; carbamoyl phosphate from bicarbonate: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 1/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Composed of two chains; the small (or glutamine) chain promotes the hydrolysis of glutamine to ammonia, which is used by the large (or ammonia) chain to synthesize carbamoyl phosphate.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the CarA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.5" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000015">
        <property type="protein sequence ID" value="KKO21149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21149">
        <property type="protein sequence ID" value="KKO21149"/>
        <property type="gene ID" value="BROFUL_00110"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.140"/>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00171"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00115"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004088">
        <property type="term" value="F:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006207">
        <property type="term" value="P:'de novo' pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01744">
        <property type="entry name" value="GATase1_CPSase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01209">
        <property type="entry name" value="CPSase_S_chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006274">
        <property type="entry name" value="CarbamoylP_synth_ssu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002474">
        <property type="entry name" value="CarbamoylP_synth_ssu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036480">
        <property type="entry name" value="CarbP_synth_ssu_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035686">
        <property type="entry name" value="CPSase_GATase1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00988">
        <property type="entry name" value="CPSase_sm_chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01097">
        <property type="entry name" value="CPSase_sm_chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52021">
        <property type="entry name" value="SSF52021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01368">
        <property type="entry name" value="CPSaseIIsmall"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CPSase_sm_chain" evidence="3">
        <location>
            <begin position="5"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="region of interest" description="CPSase" evidence="2">
        <location>
            <begin position="1"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="2">
        <location>
            <position position="260"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="351"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="353"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007800"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM01097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO21149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="377" mass="41535" checksum="B4B0644378F9F012" modified="2015-11-11" version="1">MDKKNRAILVLADGTSFPGYSLGAPGETIGEVVFNTSMMGYQEILTDPSYKGQMVVMTYPLIGNYGINEKDYESRNLFLEGFIVKEYSPFPSNWRSQVSLDAFLKGKKIVGIQGIDTRELTRRLRDFGTQQGIISTEDLDVLRLMKKVQSSAGLDGIDLVKTVTCNEVFEWKDSETHSGKPKRFNVVVYDCGVKYNILRKLSSTGCSVTVVPATTRSQAVLDMKPDGIVLSNGPGDPAAVPYMTENIKGFLGKKPVFGICLGHQLLALTLGLKTYKLKFGHHGGNQPVMDLSTRKVEITAQNHSFAVTPPQQGAVHKSPYGNVEITHINLNDKSVEGLKCHSIPAFSVQYHPEASPGPHDAGYLFERFIEMMKCQSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UP51</accession>
    <name>A0A0M2UP51_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03401</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000311">
        <property type="protein sequence ID" value="KKO17913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17913">
        <property type="protein sequence ID" value="KKO17913"/>
        <property type="gene ID" value="BROFUL_03401"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="104" mass="11907" checksum="CE0D10A06E1D70ED" modified="2015-11-11" version="1" fragment="single">NFLYESGEIASEKALAMTATMHFDGTLHVVIASEAKQSFTHKKRHLLKEVCEKTYKKKKFLYSNTIRKREKTKMNPIVYRDTEEHLFAGNSTTNVDPEPDALSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPN3</accession>
    <name>A0A0M2UPN3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03226</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000295">
        <property type="protein sequence ID" value="KKO18078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18078">
        <property type="protein sequence ID" value="KKO18078"/>
        <property type="gene ID" value="BROFUL_03226"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020945">
        <property type="entry name" value="DMSO/NO3_reduct_chaperone"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036411">
        <property type="entry name" value="TorD-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02613">
        <property type="entry name" value="Nitrate_red_del"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89155">
        <property type="entry name" value="SSF89155"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="230" mass="26585" checksum="23694ACBA026C39E" modified="2015-11-11" version="1">MSQISSFPISTEPAIRSNLYKLFSLGFRYPVPEVFKTFQNGTYLKNLWDNINALPHLKTIHVQQFELSGKVQGSLGGVSFEDFVIKYVSTFDIGTPEPPCPPYEGFYRSESRAALMLSISKFYKHFDLIMSKKEGRRELPDYLCAELEFLHFLTFKETQAKIDGNPEFLRGYLLAQKDFLERHLIQWIPKFCESLQNSARVPFYALLARITSMFITGELERVTSKVTMFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPN7</accession>
    <name>A0A0M2UPN7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein MtfA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">mtfA</name>
        <name evidence="1" type="ORF">BROFUL_03231</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000295">
        <property type="protein sequence ID" value="KKO18083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18083">
        <property type="protein sequence ID" value="KKO18083"/>
        <property type="gene ID" value="BROFUL_03231"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3979"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd20169">
        <property type="entry name" value="Peptidase_M90_mtfA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.472.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024079">
        <property type="entry name" value="MetalloPept_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010384">
        <property type="entry name" value="MtfA_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042252">
        <property type="entry name" value="MtfA_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30164">
        <property type="entry name" value="PTHR30164"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06167">
        <property type="entry name" value="Peptidase_M90"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="255" mass="29211" checksum="AC9B81E87DDD59E5" modified="2015-11-11" version="1">MFGFKHRRRDHLHSVPLPQAWLKIIERNVPYYRYLPEADRRELQGHIQVFLAEKRFEGCGGLQITDEMKVTIAAQACLLLLHRDTDYYPTMISILVYPSAYIAHVSESAGGIIREGDSVRLGESWHHGAVVLSWDDVLRGAADIHDGHNVVLHEFAHQLDQEGGAAHGSPILPRRSMYVAWARVLGAEYLHLQQDAKHGRRTMLDKYGATNPAEFFAVATECFFEKAIQLKRKHPELYEELKLYYQQDPAQLSVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPT3</accession>
    <name>A0A0M2UPT3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Uma2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03418</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000312">
        <property type="protein sequence ID" value="KKO17907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17907">
        <property type="protein sequence ID" value="KKO17907"/>
        <property type="gene ID" value="BROFUL_03418"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd06260">
        <property type="entry name" value="DUF820"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1570.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012296">
        <property type="entry name" value="Nuclease_put_TT1808"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008538">
        <property type="entry name" value="Uma2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05685">
        <property type="entry name" value="Uma2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Uma2" evidence="1">
        <location>
            <begin position="13"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO17907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="69" mass="8039" checksum="76EEB1755AA0EADD" modified="2015-11-11" version="1">MTVITGKKRMTYADYLKLDDNNRYEILNGELRMVPASSTDHQGVSRNLEFFLWNFMKEKGLGKVFDAPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPV2</accession>
    <name>A0A0M2UPV2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03167</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18118">
        <property type="protein sequence ID" value="KKO18118"/>
        <property type="gene ID" value="BROFUL_03167"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="47" mass="5589" checksum="0E649B3C06A6490E" modified="2015-11-11" version="1">MTFAIENLKESDAEATVALFRHIIDELHARSLEVERLHFKDMYLRKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPW2</accession>
    <name>A0A0M2UPW2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pyruvate:ferredoxin-oxoacid:ferredoxin oxidoreductase gamma subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03177</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18128.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18128">
        <property type="protein sequence ID" value="KKO18128"/>
        <property type="gene ID" value="BROFUL_03177"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016625">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.920.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011894">
        <property type="entry name" value="PorC_KorC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019752">
        <property type="entry name" value="Pyrv/ketoisovalerate_OxRed_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002869">
        <property type="entry name" value="Pyrv_flavodox_OxRed_cen"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01558">
        <property type="entry name" value="POR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53323">
        <property type="entry name" value="SSF53323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02175">
        <property type="entry name" value="PorC_KorC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="domain" description="POR" evidence="3">
        <location>
            <begin position="19"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18128.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="193" mass="21273" checksum="49008E3DC3A7ADD0" modified="2015-11-11" version="1">MSNYFSTQMTERIVLAGFGGQGMMLLGKLLAQAAMTDGKKVTYFPSYGTEVRGGTAVYHLVISNDEIFSPIIEEADTLIIMNQPSYQKFKGMLKSKGLLLLNASMIKADSHHDATVFNIPATEIASKLGNVLVSNIVMLGAYLEIKKLFSPSLILEQLQEMLKGKKGDLFTINKQALERGLHLIESIRQSSVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPZ8</accession>
    <name>A0A0M2UPZ8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03144</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000288">
        <property type="protein sequence ID" value="KKO18163.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18163">
        <property type="protein sequence ID" value="KKO18163"/>
        <property type="gene ID" value="BROFUL_03144"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="294"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="294"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18163.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="434" mass="47553" checksum="88BCA08323F2CC71" modified="2015-11-11" version="1">MLNKRTCILPGVCFLILSLFGCSNLIHRWTKTEHRVDNGSLEGRIDDLAGKMNLVVSDANMLHNEVEITKTYNTIMQQKIDGLEAMIRDLTDQINRLHLPVTVPEIAPTQKNTSVVTNVVVSDSEPSLAQTSDVQITENTGGPLAVARQFWNTINTNDIQSVRLFSTKESGNRLLTIDGALANHTITFGEAKVKENKATIPTVVQAQRGTTMAETRMQTVLVEEDGQWKVDVGQTMASMPGGIMDTIAIEADKTMEEGSRTGAEETEKSPDAAMQEGIQEMPQTNETLTAVTPPAQESTGTTAVDDQTDTAGSPENPDETGEMSAASQEDIPPKQEAVVISEESTPAQREAFLKENIVRLAEAEFPDQKGTQWNILSLEHKAHLTYAEVEPTPAIVGYQRLKFAVSFRDPGTPRVIGIYGFTDGQYRLLSTKKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ60</accession>
    <name>A0A0M2UQ60_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">NADH dehydrogenase I subunit B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03069</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000285">
        <property type="protein sequence ID" value="KKO18223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18223">
        <property type="protein sequence ID" value="KKO18223"/>
        <property type="gene ID" value="BROFUL_03069"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="39" mass="4311" checksum="14CA0966ACEFBE67" modified="2015-11-11" version="1">MGLESHLGDNVLTTTLTTMVNWARKSSLWPMPSGWPVVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ90</accession>
    <name>A0A0M2UQ90_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03063</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000284">
        <property type="protein sequence ID" value="KKO18253.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18253">
        <property type="protein sequence ID" value="KKO18253"/>
        <property type="gene ID" value="BROFUL_03063"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005643935" evidence="1">
        <location>
            <begin position="24"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18253.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="144" mass="15591" checksum="79786D0A792FFA11" modified="2015-11-11" version="1">MKTLKFFIVTFVCACLVSTVSYAGDYDGSKPLIFSVKTILECEPNGDSHIVTAEEMKVPNFLIVDCKKMTISPFPPVPGRRDSVIKRMERIDGKLILQGADDGIENVRDGIGWTASISEDTGKAVVTASGDDVGFVIFGACIPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQC5</accession>
    <name>A0A0M2UQC5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Strong similarity to bacterial motility regulatory protein MotR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">motR</name>
        <name evidence="4" type="ORF">BROFUL_03020</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18293.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18293">
        <property type="protein sequence ID" value="KKO18293"/>
        <property type="gene ID" value="BROFUL_03020"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3728"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02038">
        <property type="entry name" value="FlhG-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025669">
        <property type="entry name" value="AAA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033875">
        <property type="entry name" value="FlhG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025501">
        <property type="entry name" value="MinD_FleN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13614">
        <property type="entry name" value="AAA_31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003092">
        <property type="entry name" value="MinD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_31" evidence="3">
        <location>
            <begin position="9"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18293.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="272" mass="29652" checksum="BD52D5FDB1EEDCA1" modified="2015-11-11" version="1">MAGGFSKVRTIAVTSGKGGVGKTNIATNLAMLFRKYKKRVLLIDLDLGLANVDVLLGFHAEYTLHDVIAGHKKMKDIILYGPDEIMVVPASSGIEELTNLNKIQKEQLLNGFSGLDEEVDIVIVDTGAGISSNVISFVLASNEILLVTTPEPTAITDAYAMIKVLSKKKNDVNIKLLINLACSREEAEITMKKISLVSRRFLDVNIECCGYLLQDPNVPIATRLQKSFVKEYPNTIATSCLNNIASSFLKKDDGTLALGIEGYFRRIADGMP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQD6</accession>
    <name>A0A0M2UQD6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC-transporter involved in LPS biosynthesis Wzm</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">wzm</name>
        <name evidence="7" type="ORF">BROFUL_03199</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000293">
        <property type="protein sequence ID" value="KKO18097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18097">
        <property type="protein sequence ID" value="KKO18097"/>
        <property type="gene ID" value="BROFUL_03199"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3946"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013525">
        <property type="entry name" value="ABC_2_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01061">
        <property type="entry name" value="ABC2_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="97"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="133"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="166"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="219"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="domain" description="ABC2_membrane" evidence="6">
        <location>
            <begin position="47"/>
            <end position="212"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="253" mass="28647" checksum="AD0BBABC405C3A85" modified="2015-11-11" version="1">MAFPRVVLLPVVARHPGALQTNGHWHCLERHQAVADDDCLYDSVWKTGKASVRRSSLPILVYGAMLPWQFFANSLSESSNSLITNANMLSKVYFPRIIMPASAVIVSLVDFIISFAILVVLMIWCQFIPSWRIVTLPIFLLLALIASLGSGFWLAALNVKYRDFRYIVPFIVQFGLYISPVGFSTAVVPEQWRLWYSLNPMVGVIDGFRWAILGGSTHIYWPGLLLSTVLTLLVFIFGLRYFRKTERVFADVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQG2</accession>
    <name>A0A0M2UQG2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02974</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000280">
        <property type="protein sequence ID" value="KKO18338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18338">
        <property type="protein sequence ID" value="KKO18338"/>
        <property type="gene ID" value="BROFUL_02974"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="138" mass="15579" checksum="898526BAEC3DDB3F" modified="2015-11-11" version="1">MAKQTGGFGADSVTRYSLQDTERLVRRSHAGHIKGKIPKGWHDYRKKYTAIFNPIGVKYREDIVRMLPGAAQPQPNFLYESGEIASEKALAMTATMHFDGTLHVVIASEAKQSFTHKKRHLLKGVCEKTYKKSNNLVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQQ2</accession>
    <name>A0A0M2UQQ2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Transport permease protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_02879</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the ABC-2 integral membrane protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000271">
        <property type="protein sequence ID" value="KKO18423.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18423">
        <property type="protein sequence ID" value="KKO18423"/>
        <property type="gene ID" value="BROFUL_02879"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013525">
        <property type="entry name" value="ABC_2_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000412">
        <property type="entry name" value="ABC_2_transport"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01061">
        <property type="entry name" value="ABC2_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00164">
        <property type="entry name" value="ABC2TRNSPORT"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51012">
        <property type="entry name" value="ABC_TM2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="27"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="59"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="101"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="134"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="168"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="225"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="domain" description="ABC2_membrane" evidence="7">
        <location>
            <begin position="10"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU361157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18423.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="254" mass="28989" checksum="E0B66C604875F68C" modified="2015-11-11" version="1">MNSLTYNFDLIWHLVRCDFIIRYKGSILGVLWSLTLPLTQLLVLVFLFQKVVPLDIDAYPAFVFSALAPWTWFNSCLGSAGNLLINNRNLILRPRFTPYTLIIVNVLSNMLNYLIALPILFSLLLIYDRPIAPTILFLPLLMLLQGILIVGLGLIIATLNVFYRDVQHIVAVVTMLLFYMTPVFYQPQAVAEKFRILYTLNPVAVLIQVYRSIFFYGTAPEWSPLLYVGAVSVLVCAFGFLFYARNLHDIIDTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQT8</accession>
    <name>A0A0M2UQT8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Aspartate 1-decarboxylase</fullName>
            <ecNumber evidence="9">4.1.1.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Aspartate alpha-decarboxylase</fullName>
        </alternativeName>
        <component>
            <recommendedName>
                <fullName evidence="9">Aspartate 1-decarboxylase beta chain</fullName>
            </recommendedName>
        </component>
        <component>
            <recommendedName>
                <fullName evidence="9">Aspartate 1-decarboxylase alpha chain</fullName>
            </recommendedName>
        </component>
    </protein>
    <gene>
        <name evidence="9" type="primary">panD</name>
        <name evidence="14" type="ORF">BROFUL_03293</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>H(+) + L-aspartate = beta-alanine + CO2</text>
            <dbReference type="Rhea" id="RHEA:19497"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:57966"/>
            <dbReference type="EC" id="4.1.1.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9 10">
            <name>pyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
        </cofactor>
        <text evidence="9 10">Binds 1 pyruvoyl group covalently per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="9">Cofactor biosynthesis; (R)-pantothenate biosynthesis; beta-alanine from L-aspartate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Heterooctamer of four alpha and four beta subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="9 12">Is synthesized initially as an inactive proenzyme, which is activated by self-cleavage at a specific serine bond to produce a beta-subunit with a hydroxyl group at its C-terminus and an alpha-subunit with a pyruvoyl group at its N-terminus.</text>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the PanD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.11" evidence="9"/>
    <dbReference type="EMBL" id="LAQJ01000301">
        <property type="protein sequence ID" value="KKO18015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18015">
        <property type="protein sequence ID" value="KKO18015"/>
        <property type="gene ID" value="BROFUL_03293"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4059"/>
    <dbReference type="UniPathway" id="UPA00028">
        <property type="reaction ID" value="UER00002"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004068">
        <property type="term" value="F:aspartate 1-decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006523">
        <property type="term" value="P:alanine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015940">
        <property type="term" value="P:pantothenate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06919">
        <property type="entry name" value="Asp_decarbox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00446">
        <property type="entry name" value="PanD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003190">
        <property type="entry name" value="Asp_decarbox"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21012">
        <property type="entry name" value="PTHR21012"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02261">
        <property type="entry name" value="Asp_decarbox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006246">
        <property type="entry name" value="Asp_decarbox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="SSF50692"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00223">
        <property type="entry name" value="panD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 9" id="KW-0068">Autocatalytic cleavage</keyword>
    <keyword evidence="1 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 9" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="6 9" id="KW-0456">Lyase</keyword>
    <keyword evidence="2 9" id="KW-0566">Pantothenate biosynthesis</keyword>
    <keyword evidence="8 9 10" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9 10" id="KW-0704">Schiff base</keyword>
    <keyword evidence="5 9" id="KW-0865">Zymogen</keyword>
    <feature type="chain" id="PRO_5013991760" description="Aspartate 1-decarboxylase beta chain" evidence="9 13">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013991762" description="Aspartate 1-decarboxylase alpha chain" evidence="9 13">
        <location>
            <begin position="21"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="9 11">
        <location>
            <begin position="69"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with substrate; via pyruvic acid" evidence="9 10">
        <location>
            <position position="21"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="9 10">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9 11">
        <location>
            <position position="53"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="modified residue" description="Pyruvic acid (Ser)" evidence="9 12">
        <location>
            <position position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022655"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023317"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR006246-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR006246-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR006246-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR006246-5"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KKO18015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="116" mass="12925" checksum="676E91762364AD28" modified="2015-11-11" version="1">MCKAKIHAATVTETNLNYQGSISIDKALLDAVDILHYERVQVLNINNGTRVETYVIEGERNSGVICLNGAAARWAQPGDKVIIISYCLMEDKEAKNWKPKIILVDENNKLITTLPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQW0</accession>
    <name>A0A0M2UQW0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Precorrin-6X reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03281</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000300">
        <property type="protein sequence ID" value="KKO18035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18035">
        <property type="protein sequence ID" value="KKO18035"/>
        <property type="gene ID" value="BROFUL_03281"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016994">
        <property type="term" value="F:precorrin-6A reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003723">
        <property type="entry name" value="Precorrin-6x_reduct"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029021">
        <property type="entry name" value="Prot-tyrosine_phosphatase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36925">
        <property type="entry name" value="PTHR36925"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02571">
        <property type="entry name" value="CbiJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00715">
        <property type="entry name" value="precor6x_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51014">
        <property type="entry name" value="COBK_CBIJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="252" mass="28101" checksum="42650741C6EA617D" modified="2015-11-11" version="1">MILVLSGTEEGKEIVRRLHNEGLSLLTTVATEYGRKIFEQVGLETLCLQGRLDAQGFSRLIKEKGIDTVVDATHPYAIEVSQNAMDACKKTGVRYLRFEREGIPIPTHPLIHNVKTMTEAVDKSRTLGKTIFLTTGISSVARFIILKDEKELYVRILPVPEHISLCLDMGIPATHVIAMHGPFSEDLNRAMFKQCQINTMVTKDSGDVGGVLEKVNAALNEEIDTIIIERPRLDFPQKYSSIDELVNAVKIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR94</accession>
    <name>A0A0M2UR94_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Thioredoxin domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03158</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000290">
        <property type="protein sequence ID" value="KKO18150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18150">
        <property type="protein sequence ID" value="KKO18150"/>
        <property type="gene ID" value="BROFUL_03158"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd14951">
        <property type="entry name" value="NHL-2_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045302">
        <property type="entry name" value="NHL2_NHL_rpt_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001258">
        <property type="entry name" value="NHL_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012336">
        <property type="entry name" value="Thioredoxin-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01436">
        <property type="entry name" value="NHL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13905">
        <property type="entry name" value="Thioredoxin_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Thioredoxin" evidence="2">
        <location>
            <begin position="34"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="667" mass="73193" checksum="24918846DABC81D6" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URU1</accession>
    <name>A0A0M2URU1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02511</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000235">
        <property type="protein sequence ID" value="KKO18788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18788">
        <property type="protein sequence ID" value="KKO18788"/>
        <property type="gene ID" value="BROFUL_02511"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="64" mass="7342" checksum="1D03597F8ED77F5E" modified="2015-11-11" version="1">MYTLQEQKVIMFDTGQVLADEKGLIRARYSRDFLHLNKVGYEALNGKLVEILKALMSIKPTNEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USJ5</accession>
    <name>A0A0M2USJ5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03359</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000307">
        <property type="protein sequence ID" value="KKO17961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17961">
        <property type="protein sequence ID" value="KKO17961"/>
        <property type="gene ID" value="BROFUL_03359"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="59" mass="6916" checksum="9CD62CB80346D301" modified="2015-11-11" version="1">MGKQQFLRQIRSFEDLILKHTEKMEKEKAKPVPYDSVSPLPFFAPHFSPVIKKVLTVFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USN7</accession>
    <name>A0A0M2USN7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 6">Dihydrofolate reductase</fullName>
            <ecNumber evidence="3 6">1.5.1.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">dfrA</name>
        <name evidence="9" type="ORF">BROFUL_02213</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>(6S)-5,6,7,8-tetrahydrofolate + NADP(+) = 7,8-dihydrofolate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:15009"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57451"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.5.1.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 6">Cofactor biosynthesis; tetrahydrofolate biosynthesis; 5,6,7,8-tetrahydrofolate from 7,8-dihydrofolate: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 6 7">Belongs to the dihydrofolate reductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.5.1.3" evidence="3 6"/>
    <dbReference type="EMBL" id="LAQJ01000221">
        <property type="protein sequence ID" value="KKO19078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19078">
        <property type="protein sequence ID" value="KKO19078"/>
        <property type="gene ID" value="BROFUL_02213"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2764"/>
    <dbReference type="UniPathway" id="UPA00077">
        <property type="reaction ID" value="UER00158"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004146">
        <property type="term" value="F:dihydrofolate reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006545">
        <property type="term" value="P:glycine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006730">
        <property type="term" value="P:one-carbon metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046654">
        <property type="term" value="P:tetrahydrofolate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00209">
        <property type="entry name" value="DHFR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012259">
        <property type="entry name" value="DHFR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024072">
        <property type="entry name" value="DHFR-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017925">
        <property type="entry name" value="DHFR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001796">
        <property type="entry name" value="DHFR_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48069">
        <property type="entry name" value="PTHR48069"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00186">
        <property type="entry name" value="DHFR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000194">
        <property type="entry name" value="DHFR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53597">
        <property type="entry name" value="SSF53597"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00075">
        <property type="entry name" value="DHFR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51330">
        <property type="entry name" value="DHFR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0521">NADP</keyword>
    <keyword evidence="6" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="5 6 9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DHFR" evidence="8">
        <location>
            <begin position="7"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009539"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012856"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR000194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004474"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51330"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="165" mass="18588" checksum="9B501DE131CC9218" modified="2015-11-11" version="1">MKRPGLRISLIAAMASNRVIGNRGRIPWNLPAELRRFRSITMGHTLVMGRKTYESIGYALPGRINIILTGKAGYGAPGCIIARDLASAITICPEDENEMFVCGGEQLYKEAIAIADRIYLSVLHREIAGDVFFPDIPFALFRRIRSENYEDVIPYTLSIYERIHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USV1</accession>
    <name>A0A0M2USV1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 13">Dihydrolipoyl dehydrogenase</fullName>
            <ecNumber evidence="3 13">1.8.1.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">BROFUL_02166</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 13">
            <text>(R)-N(6)-dihydrolipoyl-L-lysyl-[protein] + NAD(+) = (R)-N(6)-lipoyl-L-lysyl-[protein] + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:15045"/>
            <dbReference type="Rhea" id="RHEA-COMP:10474"/>
            <dbReference type="Rhea" id="RHEA-COMP:10475"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:83099"/>
            <dbReference type="ChEBI" id="CHEBI:83100"/>
            <dbReference type="EC" id="1.8.1.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11 13">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
        <text evidence="11 13">Binds 1 FAD per subunit.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="13">The active site is a redox-active disulfide bond.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 13">Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.8.1.4" evidence="3 13"/>
    <dbReference type="EMBL" id="LAQJ01000214">
        <property type="protein sequence ID" value="KKO19123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19123">
        <property type="protein sequence ID" value="KKO19123"/>
        <property type="gene ID" value="BROFUL_02166"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2704"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004148">
        <property type="term" value="F:dihydrolipoyl dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045454">
        <property type="term" value="P:cell redox homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016156">
        <property type="entry name" value="FAD/NAD-linked_Rdtase_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006258">
        <property type="entry name" value="Lipoamide_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001100">
        <property type="entry name" value="Pyr_nuc-diS_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004099">
        <property type="entry name" value="Pyr_nucl-diS_OxRdtase_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012999">
        <property type="entry name" value="Pyr_OxRdtase_I_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02852">
        <property type="entry name" value="Pyr_redox_dim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000350">
        <property type="entry name" value="Mercury_reductase_MerA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55424">
        <property type="entry name" value="SSF55424"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01350">
        <property type="entry name" value="lipoamide_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00076">
        <property type="entry name" value="PYRIDINE_REDOX_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5 11 13" id="KW-0274">FAD</keyword>
    <keyword evidence="4 13" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7 11 13" id="KW-0520">NAD</keyword>
    <keyword evidence="11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 13" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9 13" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="15">
        <location>
            <begin position="8"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="domain" description="Pyr_redox_dim" evidence="14">
        <location>
            <begin position="357"/>
            <end position="466"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="10">
        <location>
            <position position="456"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="54"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="117"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="146"/>
            <end position="148"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="183"/>
            <end position="190"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="206"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="282"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="322"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="disulfide bond" description="Redox-active" evidence="12">
        <location>
            <begin position="45"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012608"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU003692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF02852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="KKO19123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="477" mass="51360" checksum="43E24A6E1A4F8C5F" modified="2015-11-11" version="1">MTGGDSAFDLAIIGGGPGGYGAAIRAAQLGIKTALIEKDKVGGVCLHRGCIPTKVLLHAADLYVRFLRAKEFGITVDKAEINYAQLHRRKEDVVARLFHGVQFLLKKNRVEVFHGEGYIISPNSVLVKKNGTDVNRIITKNIILATGSVPLIPGNIPHDSKYVLTSNDILVWEEIPKSIVIAGGGAIGVEFAHLLNILGAKVTILEFFTDILPAGDKEISSTLKRIFNNRGIETQTSASLEKVTVGNGVTAEIKRKDEIIPPPATRGNQEFIKADYLLLALGRNPALADIGLEKLSLTYQGKYLQTNKVMETSQKGVFAIGDITGPPLLAHKAVKQGLLAVSHLAGKETAPINYQNIPAVTYCSPQVASMGLTQEEAVKRGYKTRIGKFPFLANSKAIIDGESEEGFLKIIADDKYGEILGMHAIGPNVGELMWGMSLSAILEGTAIELTNAIFPHPTLSEAILEAAHAVIDRPIHM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USV7</accession>
    <name>A0A0M2USV7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">FtsQ domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02325</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18932">
        <property type="protein sequence ID" value="KKO18932"/>
        <property type="gene ID" value="BROFUL_02325"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005548">
        <property type="entry name" value="Cell_div_FtsQ/DivIB_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03799">
        <property type="entry name" value="FtsQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FtsQ" evidence="1">
        <location>
            <begin position="54"/>
            <end position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03799"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18932.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="218" mass="25027" checksum="AF5076F669EAE26E" modified="2015-11-11" version="1">MNDYYGMYENNLTQKIADIYGGVVLVKDVDSVKRVFPNKLAIKLLLRKPFACIKSRSNSYLVDEDGVLLPKEYYTLKDTAYDSLYIQSNKLTRLPLYGSEWDDKGIKAGIALVKFLRANNIHNLFKIVSVDVSNVCKRRSTSKSDIVLWTENNTQIRWGCSSLCNEQNELSDEEKLQNLLSIAKAEGTNLRLMEYVDVRWKKPSGKRWTKVNDMAEVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USV9</accession>
    <name>A0A0M2USV9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02574</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000239">
        <property type="protein sequence ID" value="KKO18695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18695">
        <property type="protein sequence ID" value="KKO18695"/>
        <property type="gene ID" value="BROFUL_02574"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1440.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012657">
        <property type="entry name" value="23S_rRNA-intervening_sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036583">
        <property type="entry name" value="23S_rRNA_IVS_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158446">
        <property type="entry name" value="SSF158446"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02436">
        <property type="entry name" value="TIGR02436"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="77" mass="9451" checksum="4871A5C76C3A07C1" modified="2015-11-11" version="1" fragment="single">HTPSWQMLRPYFFKKLKCYKDFIMRIKVCRKEAKESAYWIRLVVETNDEQYKREGEKLINEATELKKIFFTIILKST</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USX2</accession>
    <name>A0A0M2USX2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Vitamin B12-dependent ribonucleotide reductase</fullName>
            <ecNumber evidence="11">1.17.4.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="primary">nrdA</name>
        <name evidence="14" type="ORF">BROFUL_02340</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>[thioredoxin]-disulfide + a 2'-deoxyribonucleoside 5'-diphosphate + H2O = [thioredoxin]-dithiol + a ribonucleoside 5'-diphosphate</text>
            <dbReference type="Rhea" id="RHEA:23252"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="ChEBI" id="CHEBI:57930"/>
            <dbReference type="ChEBI" id="CHEBI:73316"/>
            <dbReference type="EC" id="1.17.4.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 11">
            <name>adenosylcob(III)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:18408"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Genetic information processing; DNA replication.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 11">Belongs to the ribonucleoside diphosphate reductase class-2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.17.4.1" evidence="11"/>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18947">
        <property type="protein sequence ID" value="KKO18947"/>
        <property type="gene ID" value="BROFUL_02340"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2907"/>
    <dbReference type="UniPathway" id="UPA00326"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004748">
        <property type="term" value="F:ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071897">
        <property type="term" value="P:DNA biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd02888">
        <property type="entry name" value="RNR_II_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000788">
        <property type="entry name" value="RNR_lg_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013509">
        <property type="entry name" value="RNR_lsu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013344">
        <property type="entry name" value="RNR_NrdJ/NrdZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008926">
        <property type="entry name" value="RNR_R1-su_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02867">
        <property type="entry name" value="Ribonuc_red_lgC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00317">
        <property type="entry name" value="Ribonuc_red_lgN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01183">
        <property type="entry name" value="RIBORDTASEM1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48168">
        <property type="entry name" value="SSF48168"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02504">
        <property type="entry name" value="NrdJ_Z"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 11" id="KW-0846">Cobalamin</keyword>
    <keyword evidence="10 11" id="KW-0170">Cobalt</keyword>
    <keyword evidence="9" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="7" id="KW-0235">DNA replication</keyword>
    <keyword evidence="6 11" id="KW-0237">DNA synthesis</keyword>
    <keyword evidence="11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8 11 14" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ribonuc_red_lgN" evidence="12">
        <location>
            <begin position="14"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="domain" description="RIBORED_LARGE" evidence="13">
        <location>
            <begin position="99"/>
            <end position="567"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022628"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU364064"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00317"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF02867"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KKO18947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="589" mass="65354" checksum="50BC6FC0BA18A46A" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USX9</accession>
    <name>A0A0M2USX9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02596</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000239">
        <property type="protein sequence ID" value="KKO18715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18715">
        <property type="protein sequence ID" value="KKO18715"/>
        <property type="gene ID" value="BROFUL_02596"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="78" mass="9258" checksum="88F73F3CF65AEDE9" modified="2015-11-11" version="1">MREIEVGCKHEWIWGIYGQFIVQPIYRCFGYASYWDSSKFIMGIVFRTMCLSTQAYANLQKHFTNSYSQKSRLKNGDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT26</accession>
    <name>A0A0M2UT26_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02550</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18770">
        <property type="protein sequence ID" value="KKO18770"/>
        <property type="gene ID" value="BROFUL_02550"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3165"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007367">
        <property type="entry name" value="DUF433"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04255">
        <property type="entry name" value="DUF433"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="79" mass="9123" checksum="B14B3E457262A9E2" modified="2015-11-11" version="1">MDNRIEANPDICHGQPCIKGTRIMVYIIIELLESGLTPDDIVKDYYPQITKDDIKQCLHYAASLIKDQEYIPFEEATQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTA1</accession>
    <name>A0A0M2UTA1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02002</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000202">
        <property type="protein sequence ID" value="KKO19288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19288">
        <property type="protein sequence ID" value="KKO19288"/>
        <property type="gene ID" value="BROFUL_02002"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043571">
        <property type="term" value="P:maintenance of CRISPR repeat elements"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006482">
        <property type="entry name" value="Cas7_Csh2/Csh2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05107">
        <property type="entry name" value="Cas_Cas7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="86" mass="9865" checksum="C0801B10A955EB30" modified="2015-11-11" version="1">MTHMFTDDPSSNRSGMRVVGLVDFQHSRPLGNEHAHKLFDMVKVEMRDKNKDYPDSINDYFGCVPGQVDGNKITVKKVIWEIPEKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTH8</accession>
    <name>A0A0M2UTH8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03023</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18296.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18296">
        <property type="protein sequence ID" value="KKO18296"/>
        <property type="gene ID" value="BROFUL_03023"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="32"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18296.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="86" mass="9956" checksum="D5ED46C23E954D21" modified="2015-11-11" version="1">MDDMRLAREDRPLLCTSVQRVVAEHKGEGSFAFDKNKRKRKEGKMREKTVAPIKHESVMDKQGIEENYPKTHEEDDQDGNIVDIEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTJ7</accession>
    <name>A0A0M2UTJ7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">50S ribosomal protein L2</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rplB</name>
        <name evidence="7" type="ORF">BROFUL_01920</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Part of the 50S ribosomal subunit. Forms a bridge to the 30S subunit in the 70S ribosome.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the universal ribosomal protein uL2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19393">
        <property type="protein sequence ID" value="KKO19393"/>
        <property type="gene ID" value="BROFUL_01920"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2389"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01320_B">
        <property type="entry name" value="Ribosomal_L2_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022666">
        <property type="entry name" value="Rbsml_prot_L2_RNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014722">
        <property type="entry name" value="Rib_L2_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002171">
        <property type="entry name" value="Ribosomal_L2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005880">
        <property type="entry name" value="Ribosomal_L2_bac/org-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022669">
        <property type="entry name" value="Ribosomal_L2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014726">
        <property type="entry name" value="Ribosomal_L2_dom3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13691">
        <property type="entry name" value="PTHR13691"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00181">
        <property type="entry name" value="Ribosomal_L2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03947">
        <property type="entry name" value="Ribosomal_L2_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002158">
        <property type="entry name" value="Ribosomal_L2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01383">
        <property type="entry name" value="Ribosomal_L2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01382">
        <property type="entry name" value="Ribosomal_L2_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="SSF50104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01171">
        <property type="entry name" value="rplB_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_L2_C" evidence="6">
        <location>
            <begin position="124"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="29"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="214"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="29"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM01382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="281" mass="30824" checksum="711AEC8B4F89C357" modified="2015-11-11" version="1">MGIVFYKPVTAGRRFASVSDFSEITKKKPEKSLLEPKKKTGGRNTEGKITAEHIGGGSRRHYRIIDFKRKKDNIPAKVAGIEYDPNRSARIALLHYADGEKRYILAPDNLRVGQMLMSGEKVEPEVGNCMPLKSIPLGLEIHNIEMRVGQGGQLVRSAGGTAKLMAKEGNYAHIVLPSGEVRKIFYGCRATIGKIGNAEHSNVRLGKAGRKRWKGRRPHVRGVAQNPVAHPLGGGEGRSGGGRHPCSRTGLLAKGGKTRKKKSLSNKFIIRRRRIGARGNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTN0</accession>
    <name>A0A0M2UTN0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phosphoglycolate phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01860</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000192">
        <property type="protein sequence ID" value="KKO19428.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19428">
        <property type="protein sequence ID" value="KKO19428"/>
        <property type="gene ID" value="BROFUL_01860"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2316"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006439">
        <property type="entry name" value="HAD-SF_hydro_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041492">
        <property type="entry name" value="HAD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023198">
        <property type="entry name" value="PGP-like_dom2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13419">
        <property type="entry name" value="HAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00413">
        <property type="entry name" value="HADHALOGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19428.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="225" mass="25149" checksum="2843782ED36E8000" modified="2015-11-11" version="1">MAVDAMLFKAIIFDLDGTLLDTLEDLSNAANRVLERHGFPTHDTGDYRYMVGDGAVVLMRRALPEDRRDDVTVLDCVRAFREEYERGWKIKTRPYDGVTEMLDVLAAHGMKMAVLSNKPDDFTKRCVSEYFPQQTFDLVLGQCDTVPLKPDPSGAMEISRFLNIPPSQFLYLGDTSIDMKTAVAAGMFPVGALWGFRSGKELLENGARLLIKRPTELLPLLDIAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTT9</accession>
    <name>A0A0M2UTT9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">DNA-directed RNA polymerase subunit beta'</fullName>
            <shortName evidence="7">RNAP subunit beta'</shortName>
            <ecNumber evidence="7">2.7.7.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">RNA polymerase subunit beta'</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Transcriptase subunit beta'</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rpoC</name>
        <name evidence="10" type="ORF">BROFUL_02268</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7 8">DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 7 8">
            <text>a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:21248"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="7">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="7">Binds 2 Zn(2+) ions per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7 8">Belongs to the RNA polymerase beta' chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.6" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000224">
        <property type="protein sequence ID" value="KKO19025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19025">
        <property type="protein sequence ID" value="KKO19025"/>
        <property type="gene ID" value="BROFUL_02268"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2830"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed 5'-3' RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.132.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.274.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.860.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01322">
        <property type="entry name" value="RNApol_bact_RpoC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045867">
        <property type="entry name" value="DNA-dir_RpoC_beta_prime"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012754">
        <property type="entry name" value="DNA-dir_RpoC_beta_prime_bact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000722">
        <property type="entry name" value="RNA_pol_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006592">
        <property type="entry name" value="RNA_pol_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007080">
        <property type="entry name" value="RNA_pol_Rpb1_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007066">
        <property type="entry name" value="RNA_pol_Rpb1_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042102">
        <property type="entry name" value="RNA_pol_Rpb1_3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007083">
        <property type="entry name" value="RNA_pol_Rpb1_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007081">
        <property type="entry name" value="RNA_pol_Rpb1_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044893">
        <property type="entry name" value="RNA_pol_Rpb1_clamp_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038120">
        <property type="entry name" value="Rpb1_funnel_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19376">
        <property type="entry name" value="PTHR19376"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04997">
        <property type="entry name" value="RNA_pol_Rpb1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00623">
        <property type="entry name" value="RNA_pol_Rpb1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04983">
        <property type="entry name" value="RNA_pol_Rpb1_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05000">
        <property type="entry name" value="RNA_pol_Rpb1_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04998">
        <property type="entry name" value="RNA_pol_Rpb1_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00663">
        <property type="entry name" value="RPOLA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02386">
        <property type="entry name" value="rpoC_TIGR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 7 8" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 7 8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7 8" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 7 8" id="KW-0808">Transferase</keyword>
    <keyword evidence="7" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="RPOLA_N" evidence="9">
        <location>
            <begin position="231"/>
            <end position="510"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="65"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="67"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="80"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="83"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="456"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="458"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="460"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="804"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="878"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="885"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="888"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00024550"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01322"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00663"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1370" mass="152978" checksum="993E7EDCDD3AAB39" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTW4</accession>
    <name>A0A0M2UTW4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 10">Shikimate kinase</fullName>
            <shortName evidence="10">SK</shortName>
            <ecNumber evidence="3 10">2.7.1.71</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">aroK</name>
        <name evidence="11" type="ORF">BROFUL_01780</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>ATP + shikimate = 3-phosphoshikimate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13121"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:36208"/>
            <dbReference type="ChEBI" id="CHEBI:145989"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.71"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="10">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 10">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 5/7.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the shikimate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.71" evidence="3 10"/>
    <dbReference type="EMBL" id="LAQJ01000186">
        <property type="protein sequence ID" value="KKO19503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19503">
        <property type="protein sequence ID" value="KKO19503"/>
        <property type="gene ID" value="BROFUL_01780"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00088"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004765">
        <property type="term" value="F:shikimate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:cellular amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00464">
        <property type="entry name" value="SK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00109">
        <property type="entry name" value="Shikimate_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031322">
        <property type="entry name" value="Shikimate/glucono_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000623">
        <property type="entry name" value="Shikimate_kinase/TSH1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023000">
        <property type="entry name" value="Shikimate_kinase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01202">
        <property type="entry name" value="SKI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01128">
        <property type="entry name" value="SHIKIMATE_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 10" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9 10" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="8 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 10 11" id="KW-0418">Kinase</keyword>
    <keyword evidence="10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 10" id="KW-0808">Transferase</keyword>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="10"/>
            <end position="15"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="14"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="32"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="56"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="78"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="120"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO19503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="179" mass="20541" checksum="08D71E8452865D01" modified="2015-11-11" version="1">MNIFLIGFRGTGKTTIGKLLAQRLDKEFIDTDEYLEQKQGKTIKDLFREGGEPLFRDIEAQTIAEVCRPDNRVIATGGGVILREENVRRLRKNGIIILLDADADTLYKRIHDNAQTQQKRPSLTSLNAYEEIEYLLAYRRPLYDRIADFVINTASLSKHDAVNKILSFLHTYVKDLRKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTX7</accession>
    <name>A0A0M2UTX7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycosyltransferase family 2</fullName>
            <ecNumber evidence="2">2.4.1.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02241</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.-" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19060.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19060">
        <property type="protein sequence ID" value="KKO19060"/>
        <property type="gene ID" value="BROFUL_02241"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="9"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19060.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="295" mass="34045" checksum="BF9BC6CA28CA23C3" modified="2015-11-11" version="1">MNDKNSLVSVIVPTYNSARFLPESVGSILAQTYHPYEIIVVDDGSTDNTKEVLRPFMQRIKCIHLEQNKGSPTARNIGIQAARGAYIAFIDGDDLWFPEKLQTDIGHFSQHPDISMVYSKHLNIDEKGVVSDDAVKKRLPSGKIFIQLFSEQNFILTSSVVVRKEVFETTGLFDEQLFNCQDWDMWLRIAFSFQVAGINKPLVKYRHNPGSLSKNRENVLKYQKQVIDKTYTAFKDTTCGISEKLYQKRLASHHAKAGRYYARTGKKRLAHENFRLSLKHDPLNLRTLRYYFQCW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU00</accession>
    <name>A0A0M2UU00_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Mg-protoporphyrin monomethylester cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">bchE</name>
        <name evidence="4" type="ORF">BROFUL_02215</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000221">
        <property type="protein sequence ID" value="KKO19080.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19080">
        <property type="protein sequence ID" value="KKO19080"/>
        <property type="gene ID" value="BROFUL_02215"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006158">
        <property type="entry name" value="Cobalamin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034466">
        <property type="entry name" value="Methyltransferase_Class_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01123">
        <property type="entry name" value="methyltransferase_(Class_B)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="B12-binding" evidence="2">
        <location>
            <begin position="17"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="3">
        <location>
            <begin position="195"/>
            <end position="429"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19080.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="473" mass="54338" checksum="D7E95B576176860A" modified="2015-11-11" version="1">MKITFLVPPPTDGKIPERVAGCAYLLYYVPNIFLLSAAAILEKSGYEVRYVETTIKKWDREHFLTFLNEDRSDVYCFYSVNLSQNTDSRAHGDIREVRGEAPIVFFGPAPSDRPAEFVVDDNSYVVRGEPEYTMLELVQALETKSTMSGIKSLSFRDRGKIIHTSNREPIEDLDLLPFPARHLLEERDAYHNPKLGKRPFTAVYTSRGCSYRCIYCVPSSLSFSRELEYKHYLGKKPPVRKRSPENIIEEFQLLKSQGYRAVNVQDDQFVWGEERTVKICEGIRDLGLVWGCSARSDHLNEPIVKAMAAAHCKFIDLGVESFNQEILDFIKKDIDVRKNEEAINLVKKYGISAKINIMFGASPLETMDTMKKNMKEVKRLKVDQVMYNIANPFPGTEFYNIARENNLFVYGDYKPVNVAKEAIIAYPHLSKTALENAVRCANYEFFLTPRFILKNIRRLGSLDSLKAMFRKLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU71</accession>
    <name>A0A0M2UU71_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Flagellar basal-body rod protein FlgG</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Distal rod protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">flgG</name>
        <name evidence="7" type="ORF">BROFUL_02123</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Bacterial flagellum basal body</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the flagella basal body rod proteins family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19140">
        <property type="protein sequence ID" value="KKO19140"/>
        <property type="gene ID" value="BROFUL_02123"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2649"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009426">
        <property type="term" value="C:bacterial-type flagellum basal body, distal rod"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001444">
        <property type="entry name" value="Flag_bb_rod_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020013">
        <property type="entry name" value="Flagellar_FlgE/F/G"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010930">
        <property type="entry name" value="Flg_bb/hook_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037925">
        <property type="entry name" value="FlgE/F/G-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012834">
        <property type="entry name" value="FlgG_G_neg"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00460">
        <property type="entry name" value="Flg_bb_rod"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06429">
        <property type="entry name" value="Flg_bbr_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117143">
        <property type="entry name" value="SSF117143"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03506">
        <property type="entry name" value="FlgEFG_subfam"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02488">
        <property type="entry name" value="flgG_G_neg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="7" id="KW-0966">Cell projection</keyword>
    <keyword evidence="7" id="KW-0969">Cilium</keyword>
    <keyword evidence="7" id="KW-0282">Flagellum</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flg_bb_rod" evidence="5">
        <location>
            <begin position="5"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="domain" description="Flg_bbr_C" evidence="6">
        <location>
            <begin position="180"/>
            <end position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00017948"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00032912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU362116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF06429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="259" mass="27653" checksum="0999F1E081191CE0" modified="2015-11-11" version="1">MIRALYTAATGMKAQQLYLDNVSNNLANINTTGFKRSQVNFQDLLYDKKFIAGSESAQGFEIPSGIQLGGGVRPISTSKVFSQGNQQNTNRSLDIAVEGNGFFQISRPDGTIAYTRDGAFELNSKGEIVTAEGLPLTPSITIQDAKEISIGTDGTVFIKGSDGSIQNVGQIMLANFPNPAGLESMGRNMYAETIASGSPIVSAPGEQGTGEIHQYALENSNVETVTELVNLITAQRAYEINSRAIKASDEMLSTINNLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU74</accession>
    <name>A0A0M2UU74_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03280</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000300">
        <property type="protein sequence ID" value="KKO18034.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18034">
        <property type="protein sequence ID" value="KKO18034"/>
        <property type="gene ID" value="BROFUL_03280"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18034.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="34" mass="3861" checksum="069C2CDB67B7CFCA" modified="2015-11-11" version="1">MNVEKKLLTNCKSGLNDFFIFTETIEKFPGGIEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU79</accession>
    <name>A0A0M2UU79_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">NADH dehydrogenase subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_03262</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 5">Membrane</location>
            <topology evidence="1 5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000299">
        <property type="protein sequence ID" value="KKO18039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18039">
        <property type="protein sequence ID" value="KKO18039"/>
        <property type="gene ID" value="BROFUL_03262"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4023"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042773">
        <property type="term" value="P:ATP synthesis coupled electron transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001750">
        <property type="entry name" value="ND/Mrp_mem"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003945">
        <property type="entry name" value="NU5C-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42829">
        <property type="entry name" value="PTHR42829"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00361">
        <property type="entry name" value="Proton_antipo_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="44"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="86"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="117"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="143"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="175"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="217"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="247"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="286"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="325"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="431"/>
            <end position="449"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="506"/>
            <end position="526"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="532"/>
            <end position="555"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="576"/>
            <end position="600"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="620"/>
            <end position="640"/>
        </location>
    </feature>
    <feature type="domain" description="Proton_antipo_M" evidence="7">
        <location>
            <begin position="143"/>
            <end position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="672" mass="77372" checksum="D4569D39CFC03163" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU98</accession>
    <name>A0A0M2UU98_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02739</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000254">
        <property type="protein sequence ID" value="KKO18571.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18571">
        <property type="protein sequence ID" value="KKO18571"/>
        <property type="gene ID" value="BROFUL_02739"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="16"/>
            <end position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18571.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="41" mass="4334" checksum="2E415FF9EF05AFCC" modified="2015-11-11" version="1">MLSHLSVQGRDKAGKGMYIHSGGILSFIAVTFPMISAEGLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUA5</accession>
    <name>A0A0M2UUA5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Protease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_01658</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19623">
        <property type="protein sequence ID" value="KKO19623"/>
        <property type="gene ID" value="BROFUL_01658"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2047"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011782">
        <property type="entry name" value="Pept_S1C_Do"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001940">
        <property type="entry name" value="Peptidase_S1C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00595">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13180">
        <property type="entry name" value="PDZ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00834">
        <property type="entry name" value="PROTEASES2C"/>
    </dbReference>
    <dbReference type="SMART" id="SM00228">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="SSF50156"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="SSF50494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02037">
        <property type="entry name" value="degP_htrA_DO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50106">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0645">Protease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1 5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644011" evidence="5">
        <location>
            <begin position="35"/>
            <end position="520"/>
        </location>
    </feature>
    <feature type="domain" description="PDZ" evidence="6">
        <location>
            <begin position="307"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="domain" description="PDZ" evidence="6">
        <location>
            <begin position="424"/>
            <end position="485"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="78"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="3">
        <location>
            <position position="159"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="3">
        <location>
            <position position="189"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="3">
        <location>
            <position position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR611782-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="520" mass="57241" checksum="60176AD3A3B0ED9C" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUD0</accession>
    <name>A0A0M2UUD0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Bacterioferritin</fullName>
            <ecNumber evidence="2">1.16.3.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_03237</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>4 Fe(2+) + 4 H(+) + O2 = 4 Fe(3+) + 2 H2O</text>
            <dbReference type="Rhea" id="RHEA:11148"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
            <dbReference type="ChEBI" id="CHEBI:29034"/>
            <dbReference type="EC" id="1.16.3.1"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterioferritin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.16.3.1" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000295">
        <property type="protein sequence ID" value="KKO18089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18089">
        <property type="protein sequence ID" value="KKO18089"/>
        <property type="gene ID" value="BROFUL_03237"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3988"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008199">
        <property type="term" value="F:ferric iron binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004322">
        <property type="term" value="F:ferroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006879">
        <property type="term" value="P:cellular iron ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006826">
        <property type="term" value="P:iron ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00907">
        <property type="entry name" value="Bacterioferritin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002024">
        <property type="entry name" value="Bacterioferritin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012347">
        <property type="entry name" value="Ferritin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009040">
        <property type="entry name" value="Ferritin-like_diiron"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008331">
        <property type="entry name" value="Ferritin_DPS_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00210">
        <property type="entry name" value="Ferritin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002560">
        <property type="entry name" value="Bacterioferritin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00601">
        <property type="entry name" value="BACFERRITIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00754">
        <property type="entry name" value="bfr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50905">
        <property type="entry name" value="FERRITIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0349">Heme</keyword>
    <keyword evidence="2 3" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0409">Iron storage</keyword>
    <keyword evidence="2 3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ferritin-like diiron" evidence="4">
        <location>
            <begin position="1"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="18"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="50"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="3">
        <location>
            <position position="52"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="54"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="94"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="127"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="130"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR002560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR002560-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="160" mass="18405" checksum="181BDF97814D9E75" modified="2015-11-11" version="1">MKGNAKVIEVLNEVLTAEITAINQYFIHAKMCENWGYLLLYEDTEKRAIEEMKHAENLIERILYLEGIPVITKLDKISVGSAVKEQTENDYGLEKVAIHRLQRAIKLCIDEADGGSRELLEHILLDEERHANDLEAYLQQIKDMGIQNFLVTQVHKKDKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUG9</accession>
    <name>A0A0M2UUG9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_02055</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19255.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19255">
        <property type="protein sequence ID" value="KKO19255"/>
        <property type="gene ID" value="BROFUL_02055"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025662">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025943">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025944">
        <property type="entry name" value="Sigma_54_int_dom_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00158">
        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01590">
        <property type="entry name" value="HTHFIS"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00675">
        <property type="entry name" value="SIGMA54_INTERACT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00676">
        <property type="entry name" value="SIGMA54_INTERACT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00688">
        <property type="entry name" value="SIGMA54_INTERACT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="8">
        <location>
            <begin position="3"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="7">
        <location>
            <begin position="141"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="6">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19255.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="459" mass="52364" checksum="F8B31E8DA4C10459" modified="2015-11-11" version="1">MKTILLVDDESSVVESLRLILKDSYRVLSTLSGKEALKILEKEHVDLILLDIKMHELNGLELLRKLQPFDHAFGVVMLTAVNDVKASVDAMKLGALDYIVKPFGVEEIKITIEKALQFRNLSREVRYLRSEYKYPSLDKLIQGRSRIMEEILDIIARVSRVDSTVLLRGESGTGKELVARAIHFYSARRENPFLVVSCPNLAGDLLEAELFGHEKGSFTGAYERRLGKFEIAEGGTIFLDEISEINLPLQAKLLRILQEKEFSRLGSHSVIKTDVRIIAATNKDLESMIRESRFREDLYYRINVVPIHLPPLRERYEDIPQLAEHFFNVFRKECHAKMECISKEAMDALLRYHWPGNVRELKNIMERTVALYGNEGALTHKHLPVEITGVSSLNLQQVKSDKTGLISLEDEVARVEKRLIEQAIQQSGGVKSKAAKLLGTTRRIFNYKMQKYGITDTEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUI2</accession>
    <name>A0A0M2UUI2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">HIT domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02026</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000206">
        <property type="protein sequence ID" value="KKO19270.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19270">
        <property type="protein sequence ID" value="KKO19270"/>
        <property type="gene ID" value="BROFUL_02026"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01275">
        <property type="entry name" value="FHIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.428.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039383">
        <property type="entry name" value="FHIT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011146">
        <property type="entry name" value="HIT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036265">
        <property type="entry name" value="HIT-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01230">
        <property type="entry name" value="HIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54197">
        <property type="entry name" value="SSF54197"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51084">
        <property type="entry name" value="HIT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HIT" evidence="4">
        <location>
            <begin position="24"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Histidine triad motif" evidence="3">
        <location>
            <begin position="118"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="active site" description="Tele-AMP-histidine intermediate" evidence="2">
        <location>
            <position position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR639383-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19270.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="158" mass="18294" checksum="9C7D7ED7FBC53ABB" modified="2015-11-11" version="1">MKNLWAPWRIAYIQEHPKDNGCFLCNAFLDNQDEKHLLVVRRKECFCILNKYPYNSGHLMIAPNKHKPDISDLTDHEMLEIMKLTRDMKELLATMMKPEGFNLGVNLGKPAGAGLVGHFHLHVVPRWNGDTNFMPVISEVKVIPQSLEDLYQEFKKHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUK1</accession>
    <name>A0A0M2UUK1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Polbeta domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03162</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000290">
        <property type="protein sequence ID" value="KKO18154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18154">
        <property type="protein sequence ID" value="KKO18154"/>
        <property type="gene ID" value="BROFUL_03162"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041633">
        <property type="entry name" value="Polbeta"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18765">
        <property type="entry name" value="Polbeta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Polbeta" evidence="2">
        <location>
            <begin position="29"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18765"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="112" mass="12884" checksum="3AF9A2C1A424C46D" modified="2015-11-11" version="1">MIRLELWICMEEILVTLEEIKKVAIPACREFNVKKLDIFGSLARGEVTSGSDVDLLVEFENPALNPAKRYFGLLHRLEDTLHCEVDLLTINGLRNPYFHSHVLKEKITIYEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUK5</accession>
    <name>A0A0M2UUK5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Ribonuclease VapC</fullName>
            <shortName evidence="5">RNase VapC</shortName>
            <ecNumber evidence="5">3.1.-.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Toxin VapC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">vapC</name>
        <name evidence="7" type="ORF">BROFUL_02622</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Toxic component of a toxin-antitoxin (TA) system. An RNase.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the PINc/VapC protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18671">
        <property type="protein sequence ID" value="KKO18671"/>
        <property type="gene ID" value="BROFUL_02622"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090729">
        <property type="term" value="F:toxin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00265">
        <property type="entry name" value="VapC_Nob1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002716">
        <property type="entry name" value="PIN_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022907">
        <property type="entry name" value="VapC_family"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01850">
        <property type="entry name" value="PIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 5" id="KW-0540">Nuclease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0800">Toxin</keyword>
    <keyword evidence="1 5" id="KW-1277">Toxin-antitoxin system</keyword>
    <feature type="domain" description="PINc" evidence="6">
        <location>
            <begin position="6"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="8"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="97"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00265"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="129" mass="14734" checksum="D25E8FC7BF0CA418" modified="2015-11-11" version="1">MNGRFLLDTNIIIALFAKDPKIHDRMANAEEIFVSCIAIGEMYFGAYKSLKIQENISRIDEFVLKNTVLSCNTETAKIYGNIKNRLKDKGQPIPENDIWLAAIAQQYGLILVTKDSHFDAIENLKIEKW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUN5</accession>
    <name>A0A0M2UUN5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03092</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000286">
        <property type="protein sequence ID" value="KKO18194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18194">
        <property type="protein sequence ID" value="KKO18194"/>
        <property type="gene ID" value="BROFUL_03092"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="66"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="104"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="133"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="176"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="209"/>
            <end position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="249" mass="27594" checksum="BF69B48F39A7EDE6" modified="2015-11-11" version="1">MRKDSNFLILVGTIGLFVCINIFLMASGKLPFSSDGFGIILGAGLTLAIYSFLYKDNPAFKIAENLYVGVSLGYTIIITWFNFLKPDLYDPLIVPMFSKAATKSPQYALLIPSLLGIFMLLRFSRKLSWLSRWTFAFVVGLGAGVSIPRVISAFILEQIKPSLQPVFSSGETVFSSINTLLIMLGVISVLIYFIFSVEHKGAIGKISKIGIWFLMISFGASFGYTVMGRLSLLIGRIQFLLRDWLGILQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUR1</accession>
    <name>A0A0M2UUR1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Glycos_transf_1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01504</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000155">
        <property type="protein sequence ID" value="KKO19778.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19778">
        <property type="protein sequence ID" value="KKO19778"/>
        <property type="gene ID" value="BROFUL_01504"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1859"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="40"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="74"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="domain" description="Glycos_transf_1" evidence="2">
        <location>
            <begin position="373"/>
            <end position="432"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19778.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="505" mass="58217" checksum="F31BEB602A75B065" modified="2015-11-11" version="1">MPISEAHKYFCKAEHLKETGLHREAITWYKKAIENDPHFIPAYYTLALLYHQTQQFDIAIRYLKKVIDLDPNDTSAMNNLGVLFYATDRLREAKQYLERALSIDGNYHEARDNLKKVHQKLKNAPLQFTHNRSMNSSDIPSLKVGFVSIWFERGQSYVTKILRDVIAREHETFIFARTGGVYGQPMLQVDGMWAAKNLTTFPDYDIPCEIFEKWINDNHLDVVIFNEEYDWKLVSLCKKKGIKTVTYLDYYKDDWKPYMRLYDAVLCSTKRTFLLVKDICKAYYLGWGVDTELFKPVSNGKKHTFFHNAGWLGINYRKMTPAVIIAFDAFSCNNSDLTLFIHAQAELERLPPEIVHIVRNNSRITYHKETVPAPGLYHKGNILIFPSKLEGLGLPLLEGLSCGMPVIATDAPPMNEFIRNGYNGLLVKVVQKLTRQDNIAFPEEIVDIHDLAAKMQELAKDNTLQAVMSNNSRAYAKQHLNLGKLKYEIDRVLHTLSTEAITPQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUS9</accession>
    <name>A0A0M2UUS9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02526</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18746.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18746">
        <property type="protein sequence ID" value="KKO18746"/>
        <property type="gene ID" value="BROFUL_02526"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3137"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046429">
        <property type="term" value="F:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011005">
        <property type="entry name" value="Dihydropteroate_synth-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004588">
        <property type="entry name" value="IspG_bac-typ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30454">
        <property type="entry name" value="PTHR30454"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04551">
        <property type="entry name" value="GcpE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18746.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="228" mass="24319" checksum="6DFEF19325B39D7B" modified="2015-11-11" version="1">MIQRRKTRVVNAGGVLIGGDNPVSVQTMTKTHTEDIDATVKQIKDLETIGCNIVRVAVPTIVTAKCLGAIKRQIQIPLVADIHFGHHLALEAIAQGVDKIRINPGNMKDKKKLEEVVLAAKNRGIPIRIGVNSGSVRSEGDEAEELTTLMVKTVLRYCDHFESLGFKDIVLSLKASDVPSTLAAYRSIATQCDYPLHLGVTAAGPPSLATIKSAIGIGGLLSEASVIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUT6</accession>
    <name>A0A0M2UUT6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_03059</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000284">
        <property type="protein sequence ID" value="KKO18249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18249">
        <property type="protein sequence ID" value="KKO18249"/>
        <property type="gene ID" value="BROFUL_03059"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3777"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030296">
        <property type="entry name" value="MlaF/Mkl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43023:SF6">
        <property type="entry name" value="PTHR43023:SF6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="14"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="46"/>
            <end position="53"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="264" mass="29157" checksum="6BAF8C7EE5B88CA5" modified="2015-11-11" version="1">MDEKRELTAEKKKIVVRDLDMGYGSYVLMRNMNFTVNKGDIFVIMGGSGCGKSTLLKVLIGLLEPLRGQVLYDGVNFWEGDAQQKDRIMRRFGILYQSSALWSSMTLAENVSLPLEQYTNLSKNQIRELVSLKLALVGLAGFEEFYPSEISGGMRKRAGLARAMALDPNILFFDEPSAGLDPVSARLLDDLIIELRDSLGATVVVVTHELQSIFAIGNNSVFLDPDTKTIIASGDPKRLLAESKDPKVMSFLTRGEKTEQGVVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV07</accession>
    <name>A0A0M2UV07_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">fn3_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02482</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18821">
        <property type="protein sequence ID" value="KKO18821"/>
        <property type="gene ID" value="BROFUL_02482"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013784">
        <property type="entry name" value="Carb-bd-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029413">
        <property type="entry name" value="RG-lyase_II"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14686">
        <property type="entry name" value="fn3_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49452">
        <property type="entry name" value="SSF49452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49503">
        <property type="entry name" value="SSF49503"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="domain" description="fn3_3" evidence="2">
        <location>
            <begin position="204"/>
            <end position="249"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14686"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="255" mass="29113" checksum="0F769D5F71B06D5D" modified="2015-11-11" version="1">MFIKFNFQERHKLRCNSLIPSVWTVLRKEFVKGAVERQAFLFMRIFMRNVWVSLKTPIILFIVSCCIASSLTFDTLAEEKGLASVNGTVKAKKAKYLKDTIVYIENVPNVFEPPKERAVIDQKNMAFIPHVLPVVKGTTVDFLNSDLVQHNVYSPDTVADNFNLGTWLKGETRPFTFSKLGTASIRCNVHVDMLAYVLVLQNPFFARVDNEGKFSIANVPEGKYVLKLWNERFKAEDKQVEVKADAHATTEFDLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV67</accession>
    <name>A0A0M2UV67_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02401</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000230">
        <property type="protein sequence ID" value="KKO18886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18886">
        <property type="protein sequence ID" value="KKO18886"/>
        <property type="gene ID" value="BROFUL_02401"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="48" mass="5357" checksum="DD73823D2617C61C" modified="2015-11-11" version="1">MNLTQLIEKKLFAMLRKFPAQAIKKKCGCVDSNNPAKSHQKTVATGHM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV75</accession>
    <name>A0A0M2UV75_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Succinyl-CoA synthase alpha subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01802</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000188">
        <property type="protein sequence ID" value="KKO19490.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19490">
        <property type="protein sequence ID" value="KKO19490"/>
        <property type="gene ID" value="BROFUL_01802"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2241"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.261">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033847">
        <property type="entry name" value="Citrt_syn/SCS-alpha_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003781">
        <property type="entry name" value="CoA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005810">
        <property type="entry name" value="CoA_lig_alpha"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005811">
        <property type="entry name" value="CoA_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016102">
        <property type="entry name" value="Succinyl-CoA_synth-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02629">
        <property type="entry name" value="CoA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00549">
        <property type="entry name" value="Ligase_CoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00881">
        <property type="entry name" value="CoA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52210">
        <property type="entry name" value="SSF52210"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01019">
        <property type="entry name" value="sucCoAalpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01216">
        <property type="entry name" value="SUCCINYL_COA_LIG_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CoA_binding" evidence="1">
        <location>
            <begin position="4"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19490.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="220" mass="23164" checksum="DC673F09A7427842" modified="2015-11-11" version="1">MGILINKDTRVLCQGITGHAGSFHAERMLEYGTRLVAGVTPGKGGTMHHNVPVFDNVLDAVTKTGANASVIYVPAPFAADAIIEAADAGIELVVCITEGIPTMDMVKVKKYLSHKQTRLIGPNCPGIITPGACKIGIMPGYIHRPGHVGVVSRSGTLTYEAVWQLTRRGIGQSTCLGIGGDPIVGTGFVEVMRLFQNDPETQAIVMIGEIGGSAEEEAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVC3</accession>
    <name>A0A0M2UVC3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">dTDP-glucose 4,6-dehydratase</fullName>
            <ecNumber evidence="4 5">4.2.1.46</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02837</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>dTDP-alpha-D-glucose = dTDP-4-dehydro-6-deoxy-alpha-D-glucose + H2O</text>
            <dbReference type="Rhea" id="RHEA:17221"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:57477"/>
            <dbReference type="ChEBI" id="CHEBI:57649"/>
            <dbReference type="EC" id="4.2.1.46"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 5">
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 5">Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.46" evidence="4 5"/>
    <dbReference type="EMBL" id="LAQJ01000268">
        <property type="protein sequence ID" value="KKO18454.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18454">
        <property type="protein sequence ID" value="KKO18454"/>
        <property type="gene ID" value="BROFUL_02837"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3510"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008460">
        <property type="term" value="F:dTDP-glucose 4,6-dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009225">
        <property type="term" value="P:nucleotide-sugar metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05246">
        <property type="entry name" value="dTDP_GD_SDR_e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005888">
        <property type="entry name" value="dTDP_Gluc_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016040">
        <property type="entry name" value="NAD(P)-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16363">
        <property type="entry name" value="GDP_Man_Dehyd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01181">
        <property type="entry name" value="dTDP_gluc_dehyt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0456">Lyase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD(P)-bd_dom" evidence="6">
        <location>
            <begin position="4"/>
            <end position="306"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001539"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001911"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008178"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011990"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU004473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF16363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18454.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="343" mass="39239" checksum="DF2CD7BB7551E096" modified="2015-11-11" version="1">MAILITGGAGFIGSHFARRMIHQGKRTVVLDKLTYAGNLENLKDVVDNSKTSQLFKFYKGDICNQELVEHIFSEEDIDTLVNFAAESHVDRSISSAGNFIDTDMKGVFVLLEAARRFSIKKFIQISTDEVYGTTHKDAFRETDALNPSNPYAASKAGGDRLAYAYWVTYELPVIITRASNNYGPNQHPEKFIPLFITNALEDKVLPLYGDGRQVRDWIHVEDHCAAIDFIMDHGKDGEVYNIGGGNERYNVDTAHFILDELRKSHSLLEHVKDRAGHDRRYALDCSKLKSLGWKAQIKFENGLKDTIQWYEDNQSWWKRIKNGEFVEYYNKQYKHRFAGTVLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVG0</accession>
    <name>A0A0M2UVG0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_02364</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18971.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18971">
        <property type="protein sequence ID" value="KKO18971"/>
        <property type="gene ID" value="BROFUL_02364"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009740">
        <property type="term" value="P:gibberellic acid mediated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006597">
        <property type="entry name" value="Sel1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001440">
        <property type="entry name" value="TPR_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00515">
        <property type="entry name" value="TPR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13174">
        <property type="entry name" value="TPR_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00671">
        <property type="entry name" value="SEL1"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="14"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="12"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0939">Gibberellin signaling pathway</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0802">TPR repeat</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="repeat" description="TPR" evidence="5">
        <location>
            <begin position="123"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="5">
        <location>
            <begin position="157"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="5">
        <location>
            <begin position="191"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="5">
        <location>
            <begin position="225"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="5">
        <location>
            <begin position="259"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="5">
        <location>
            <begin position="293"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="5">
        <location>
            <begin position="327"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="5">
        <location>
            <begin position="361"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="5">
        <location>
            <begin position="395"/>
            <end position="428"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="5">
        <location>
            <begin position="429"/>
            <end position="462"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="5">
        <location>
            <begin position="463"/>
            <end position="496"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="5">
        <location>
            <begin position="497"/>
            <end position="530"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00019143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18971.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="567" mass="64163" checksum="627529FA6766639F" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVI6</accession>
    <name>A0A0M2UVI6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 12">GTP 3',8-cyclase</fullName>
            <ecNumber evidence="3 12">4.1.99.22</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12">Molybdenum cofactor biosynthesis protein A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="primary">moaA</name>
        <name evidence="14" type="ORF">BROFUL_02784</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 12">
            <text>AH2 + GTP + S-adenosyl-L-methionine = (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate + 5'-deoxyadenosine + A + H(+) + L-methionine</text>
            <dbReference type="Rhea" id="RHEA:49576"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:131766"/>
            <dbReference type="EC" id="4.1.99.22"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="12">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="12">Binds 2 [4Fe-4S] clusters. Binds 1 [4Fe-4S] cluster coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine and 1 [4Fe-4S] cluster coordinated with 3 cysteines and the GTP-derived substrate.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 12">Cofactor biosynthesis; molybdopterin biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="12">Monomer and homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="12">Belongs to the radical SAM superfamily. MoaA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.99.22" evidence="3 12"/>
    <dbReference type="EMBL" id="LAQJ01000264">
        <property type="protein sequence ID" value="KKO18514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18514">
        <property type="protein sequence ID" value="KKO18514"/>
        <property type="gene ID" value="BROFUL_02784"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3445"/>
    <dbReference type="UniPathway" id="UPA00344"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019008">
        <property type="term" value="C:molybdopterin synthase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061798">
        <property type="term" value="F:GTP 3',8'-cyclase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1904047">
        <property type="term" value="F:S-adenosyl-L-methionine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01225_B">
        <property type="entry name" value="MoaA_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013483">
        <property type="entry name" value="MoaA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000385">
        <property type="entry name" value="MoaA_NifB_PqqE_Fe-S-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010505">
        <property type="entry name" value="Mob_synth_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06463">
        <property type="entry name" value="Mob_synth_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02666">
        <property type="entry name" value="moaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01305">
        <property type="entry name" value="MOAA_NIFB_PQQE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="9 12" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="7 12" id="KW-0408">Iron</keyword>
    <keyword evidence="8 12" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="11 12" id="KW-0456">Lyase</keyword>
    <keyword evidence="5 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10 12" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="6 12" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 12" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="13">
        <location>
            <begin position="11"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="20"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="27"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="31"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="33"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="34"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="70"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="74"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="101"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="125"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="162"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="196"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="261"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-substrate</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="264"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-substrate</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <begin position="266"/>
            <end position="268"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="278"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-substrate</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KKO18514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="328" mass="36715" checksum="0D91BD3EC03B4D58" modified="2015-11-11" version="1">MKVQGMNIIDKYFRRINRLRISVTDLCNLRCVYCRPESGLDLARHKDILTYEEIVAVVRHAVKLGIKSFRLTGGEPLFRKNIENLLWMLGKVQGIEDLAMTTNGIYLKNYARVLKEIGLFRLNISLDSLDAAKFEEITRGGKLKDVLDGIEEVLRLGFKNTKINVVAMKGINDDEFEEFAKLTLERNLEVRFIEFMAMNKDRLDSEGKYIPMAEIIDIIGRRNELTSLPPPMLGSGAAKLYKINGARGVLGFVSAVSQPFCTSCNRLRLTSDGKLRSCLLSGGEVDLKAILRNDPAEEQLTDAFLRAANLKPSAHSGKGHVVMHEVGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVK8</accession>
    <name>A0A0M2UVK8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8 9">50S ribosomal protein L1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">rplA</name>
        <name evidence="10" type="ORF">BROFUL_02264</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.</text>
    </comment>
    <comment type="function">
        <text evidence="9">Protein L1 is also a translational repressor protein, it controls the translation of the L11 operon by binding to its mRNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 9">Belongs to the universal ribosomal protein uL1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000224">
        <property type="protein sequence ID" value="KKO19021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19021">
        <property type="protein sequence ID" value="KKO19021"/>
        <property type="gene ID" value="BROFUL_02264"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2826"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006417">
        <property type="term" value="P:regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00403">
        <property type="entry name" value="Ribosomal_L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01318_B">
        <property type="entry name" value="Ribosomal_L1_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005878">
        <property type="entry name" value="Ribosom_L1_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002143">
        <property type="entry name" value="Ribosomal_L1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023674">
        <property type="entry name" value="Ribosomal_L1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028364">
        <property type="entry name" value="Ribosomal_L1/biogenesis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016095">
        <property type="entry name" value="Ribosomal_L1_3-a/b-sand"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00687">
        <property type="entry name" value="Ribosomal_L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002155">
        <property type="entry name" value="Ribosomal_L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56808">
        <property type="entry name" value="SSF56808"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01169">
        <property type="entry name" value="rplA_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 9" id="KW-0678">Repressor</keyword>
    <keyword evidence="7 9" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="6 9 10" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5 9" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 9" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="4 9" id="KW-0810">Translation regulation</keyword>
    <keyword evidence="9" id="KW-0820">tRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00029521"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01318"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="226" mass="24494" checksum="96118BC9E7100198" modified="2015-11-11" version="1">MSKRSKRYVESKKIVDSEKKYELKEAIKLLKSFKRAKFDESVEVAMKLGIDPKQSDQLIRGSVSLPKGIGRSLKVIVFAAGEKATIAKKAGADEVGAEELVKKVEGGWTDFDVAIATSDMMRLVGKLGRVLGPQGKMPSPKSGTVTDDIETAVKEFKAGKIEYRTDAGGNVHTIVGKVSFSDKDLEDNINAFVKQIVNSRPASAKGVFIEKVSVSSTMNPGIMLEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVM3</accession>
    <name>A0A0M2UVM3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01679</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000174">
        <property type="protein sequence ID" value="KKO19610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19610">
        <property type="protein sequence ID" value="KKO19610"/>
        <property type="gene ID" value="BROFUL_01679"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2074"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="366" mass="40795" checksum="FBFE05222EE68054" modified="2015-11-11" version="1">MQAEAETKPTPDPSGGGEKTQRVLVCFGPEHAPLEQRMVELALEEAMHLKPKPHMVLFCAFQFDEEAAKDIDETNWPGVTLLKAQMNADLLTDDLKKKRSSNESFWLIGQPDVRVISGEWLVDSEGRQILLYDNGKKLSGLDSLAEINHIDKKDLCVYAAISQRKDLWTDFTDAQGSRIYCMQHSGGTGEEQHGGIHSVPGHFQGVFSRIGDIAVAVKRNEFPDEGKLFDFIKQLRRDKQIVDCINQITIHSPLTTKHMSQIEILGFDYYNPKTGTVESGGKGDIAMWMLDTDYDGRSLFPSQVFFPMAGDKEGWATLAKNLKAEIDEEKIGAFRGTVSLPFTPGKAVAVKIIDARGIESLKIIRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVQ7</accession>
    <name>A0A0M2UVQ7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Fic/DOC family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02711</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000251">
        <property type="protein sequence ID" value="KKO18594.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18594">
        <property type="protein sequence ID" value="KKO18594"/>
        <property type="gene ID" value="BROFUL_02711"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006440">
        <property type="entry name" value="Doc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003812">
        <property type="entry name" value="Fido"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036597">
        <property type="entry name" value="Fido-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39426">
        <property type="entry name" value="PTHR39426"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02661">
        <property type="entry name" value="Fic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140931">
        <property type="entry name" value="SSF140931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01550">
        <property type="entry name" value="DOC_P1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51459">
        <property type="entry name" value="FIDO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fido" evidence="1">
        <location>
            <begin position="1"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51459"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18594.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="69" mass="7915" checksum="D261FE6FFFF723F3" modified="2015-11-11" version="1">MHSLVKNHPFTDGNKRTAIAAASIFLLRNNYRLTAPNKELERFTLKVASEHLVLKEIAPWFKGHSMRVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVT6</accession>
    <name>A0A0M2UVT6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01349</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000139">
        <property type="protein sequence ID" value="KKO19957.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19957">
        <property type="protein sequence ID" value="KKO19957"/>
        <property type="gene ID" value="BROFUL_01349"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19957.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="72" mass="8611" checksum="4F25FE783B540F14" modified="2015-11-11" version="1">MKYKRIVMSKSSYQVNNFTKKDCEVLNDSFLEYYALCALRKNLMRAVELAQHNNLLYSRNTIYAYKGMKLHH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVY7</accession>
    <name>A0A0M2UVY7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 11">DNA polymerase I</fullName>
            <ecNumber evidence="2 11">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">polA</name>
        <name evidence="15" type="ORF">BROFUL_01284</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10 11">
            <text>a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 11">Belongs to the DNA polymerase type-A family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="2 11"/>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20012">
        <property type="protein sequence ID" value="KKO20012"/>
        <property type="gene ID" value="BROFUL_01284"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1585"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008408">
        <property type="term" value="F:3'-5' exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006261">
        <property type="term" value="P:DNA-templated DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd09898">
        <property type="entry name" value="H3TH_53EXO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002562">
        <property type="entry name" value="3'-5'_exonuclease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020046">
        <property type="entry name" value="5-3_exonucl_a-hlix_arch_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002421">
        <property type="entry name" value="5-3_exonuclease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036279">
        <property type="entry name" value="5-3_exonuclease_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019760">
        <property type="entry name" value="DNA-dir_DNA_pol_A_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001098">
        <property type="entry name" value="DNA-dir_DNA_pol_A_palm_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020045">
        <property type="entry name" value="DNA_polI_H3TH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018320">
        <property type="entry name" value="DNA_polymerase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002298">
        <property type="entry name" value="DNA_polymerase_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008918">
        <property type="entry name" value="HhH2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10133">
        <property type="entry name" value="PTHR10133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01367">
        <property type="entry name" value="5_3_exonuc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02739">
        <property type="entry name" value="5_3_exonuc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00476">
        <property type="entry name" value="DNA_pol_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01612">
        <property type="entry name" value="DNA_pol_A_exo1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00868">
        <property type="entry name" value="DNAPOLI"/>
    </dbReference>
    <dbReference type="SMART" id="SM00474">
        <property type="entry name" value="35EXOc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00475">
        <property type="entry name" value="53EXOc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00279">
        <property type="entry name" value="HhH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00482">
        <property type="entry name" value="POLAc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47807">
        <property type="entry name" value="SSF47807"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="SSF56672"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00593">
        <property type="entry name" value="pola"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00447">
        <property type="entry name" value="DNA_POLYMERASE_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0227">DNA damage</keyword>
    <keyword evidence="11" id="KW-0234">DNA repair</keyword>
    <keyword evidence="11" id="KW-0235">DNA replication</keyword>
    <keyword evidence="9 11" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8 11" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5 11" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="53EXOc" evidence="13">
        <location>
            <begin position="3"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="domain" description="3'-5' exonuclease" evidence="12">
        <location>
            <begin position="293"/>
            <end position="478"/>
        </location>
    </feature>
    <feature type="domain" description="POLAc" evidence="14">
        <location>
            <begin position="645"/>
            <end position="852"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00020311"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00024632"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU004460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM00474"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="SMART" id="SM00475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="SMART" id="SM00482"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KKO20012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="888" mass="100563" checksum="E047B023E44D2D00" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW07</accession>
    <name>A0A0M2UW07_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Probable glycine dehydrogenase (decarboxylating) subunit 1</fullName>
            <ecNumber evidence="4">1.4.4.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Glycine cleavage system P-protein subunit 1</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Glycine decarboxylase subunit 1</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Glycine dehydrogenase (aminomethyl-transferring) subunit 1</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">gcvPA</name>
        <name evidence="5" type="ORF">BROFUL_01304</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 4">The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 4">
            <text>(R)-N(6)-lipoyl-L-lysyl-[glycine-cleavage complex H protein] + glycine + H(+) = (R)-N(6)-(S(8)-aminomethyldihydrolipoyl)-L-lysyl-[glycine-cleavage complex H protein] + CO2</text>
            <dbReference type="Rhea" id="RHEA:24304"/>
            <dbReference type="Rhea" id="RHEA-COMP:10494"/>
            <dbReference type="Rhea" id="RHEA-COMP:10495"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:83099"/>
            <dbReference type="ChEBI" id="CHEBI:83143"/>
            <dbReference type="EC" id="1.4.4.2"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="4">The glycine cleavage system is composed of four proteins: P, T, L and H. In this organism, the P 'protein' is a heterodimer of two subunits.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the GcvP family. N-terminal subunit subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.4.4.2" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20032.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20032">
        <property type="protein sequence ID" value="KKO20032"/>
        <property type="gene ID" value="BROFUL_01304"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1610"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004375">
        <property type="term" value="F:glycine dehydrogenase (decarboxylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019464">
        <property type="term" value="P:glycine decarboxylation via glycine cleavage system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009116">
        <property type="term" value="P:nucleoside metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00613">
        <property type="entry name" value="GDC-P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00712">
        <property type="entry name" value="GcvPA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023010">
        <property type="entry name" value="GcvPA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020581">
        <property type="entry name" value="GDC_P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42806">
        <property type="entry name" value="PTHR42806"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02347">
        <property type="entry name" value="GDC-P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006815">
        <property type="entry name" value="GcvPA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003788"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00033655"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00712"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20032.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="446" mass="49880" checksum="6C7667E119BF8157" modified="2015-11-11" version="1">MDYIPHTKGDKEKMLREMGLPSLEPLLVDIPKTLRNFSMKLPHGLSEPQVLKSLKRFSEKNTHTDQCISFLGAGAYEHYIPSLVDHLASRSEFYTCYTPYQPEVSQGTLQAIFEFQTFMCELTGMDVANASLYDGSTAFAEAALLSIRLKDKNKVICSRAIHPEYRQALRTYVKGMHTEIVEIGTPEGITDIHHLETAIDDSTAAVLIQNPNFFGCIEDMETISQITHRHGALFVACVNPLSLGILKPPGEYGADIAIGEAQMLGNYLNYGGPYLGFFAVSKELLRKMPGRIAGETVDHHGRRCFVLTLQAREQHIRREKATSNICTNQALLALRTCIYLSALGKKGLAELAMLNVQKSHYAYERLCALDIVKPVFSQPFFHEFVMKSIDSLPMQKINEHLLQRGIIGGLELSAFYPELANSMLVCVTETKTKESIDRLVSELTNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW47</accession>
    <name>A0A0M2UW47_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02556</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000238">
        <property type="protein sequence ID" value="KKO18724.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18724">
        <property type="protein sequence ID" value="KKO18724"/>
        <property type="gene ID" value="BROFUL_02556"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03255">
        <property type="entry name" value="ABC_MJ0796_LolCDE_FtsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017911">
        <property type="entry name" value="MacB_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="2"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="39"/>
            <end position="46"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18724.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="220" mass="24874" checksum="C0B41ED9E280F39F" modified="2015-11-11" version="1">MIRTERLGKFYSHSSQYEVRAISDITVKISKNSVVVFNGPSGSGKTTLLNIIGTLDRPSTGKVFMYGREITVFSDIALARLRREKIGFIFQYFHLIPRLTSWENVAYPLIPLGIGLKERFERAKFLLERMEIGDRLSHTPEELSGGQQQRVAIARALINNPEIIIADEPTSNIDDETSSRILQFLGELKARGVTILIATHDAMFEKIADTVYKMKNGRLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW70</accession>
    <name>A0A0M2UW70_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Sec-independent protein translocase protein TatC</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">tatC</name>
        <name evidence="7" type="ORF">BROFUL_01167</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Forms a complex with TatA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the TatC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000126">
        <property type="protein sequence ID" value="KKO20092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20092">
        <property type="protein sequence ID" value="KKO20092"/>
        <property type="gene ID" value="BROFUL_01167"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1444"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033281">
        <property type="term" value="C:TAT protein transport complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008320">
        <property type="term" value="F:protein transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043953">
        <property type="term" value="P:protein transport by the Tat complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00902">
        <property type="entry name" value="TatC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006860">
        <property type="entry name" value="FecR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019820">
        <property type="entry name" value="Sec-indep_translocase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002033">
        <property type="entry name" value="TatC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30371">
        <property type="entry name" value="PTHR30371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04773">
        <property type="entry name" value="FecR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00902">
        <property type="entry name" value="TatC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01840">
        <property type="entry name" value="TATCFAMILY"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00945">
        <property type="entry name" value="tatC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01218">
        <property type="entry name" value="TATC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0653">Protein transport</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0811">Translocation</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="31"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="82"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="121"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="168"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="204"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="227"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="254"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="domain" description="FecR" evidence="6">
        <location>
            <begin position="315"/>
            <end position="400"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="448" mass="50264" checksum="AAF9B34CA0362C81" modified="2015-11-11" version="1">MEETKPENAASETEGLRMPLGAHLEELRRRVVYSLIAIILCFIVCWFFKVQILDMAKRPHKFAMEKVGLSTELQVLSYQEGFYAYMKLCFITSVFFAYPFVIYQIWQFVSAGLYQRERRYVLLFLPVSYAAFVVGGLFGYFLLIPFGLQFLIGILGPGIQPIITMRDYVSFVFMLTVALGLVFQLPLVMLLLSKIRFITPDKFIAWRKYAILAIFIIAAIVTPPDPFTQSMTAIPMIVLYELGILIARPTRKGFFFLGGIVGGGIMILLALYFYLTYKGGDVNLFDTRGEVQFLYPEGQAWEEVSNHSHFRNGITLKTGSEGRTALSTKKGIDMSMDANTEVHIADSLKIRLKSGQILVSVKGSEIPLEIDTPNGRIRTERGTLNIVAKDFLTVVTAVKGDAVLVMEGEEKKLLEGRQHKMSIGGEPVDIGAIINWSEGVLNKPDGKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWC3</accession>
    <name>A0A0M2UWC3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Polysacc_synt_C domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_01152</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000124">
        <property type="protein sequence ID" value="KKO20127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20127">
        <property type="protein sequence ID" value="KKO20127"/>
        <property type="gene ID" value="BROFUL_01152"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029303">
        <property type="entry name" value="Polysacc_synt_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002797">
        <property type="entry name" value="Polysacc_synth"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01943">
        <property type="entry name" value="Polysacc_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14667">
        <property type="entry name" value="Polysacc_synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="30"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="57"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="100"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="142"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="175"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="199"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="245"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="272"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="317"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="348"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="385"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="409"/>
            <end position="434"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="446"/>
            <end position="464"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="470"/>
            <end position="491"/>
        </location>
    </feature>
    <feature type="domain" description="Polysacc_synt_C" evidence="7">
        <location>
            <begin position="355"/>
            <end position="489"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF14667"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="515" mass="57884" checksum="7FD34DE53A9E4EF8" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWH2</accession>
    <name>A0A0M2UWH2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative PTS system component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01976</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19316">
        <property type="protein sequence ID" value="KKO19316"/>
        <property type="gene ID" value="BROFUL_01976"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00211">
        <property type="entry name" value="PTS_IIA_fru"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016152">
        <property type="entry name" value="PTrfase/Anion_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002178">
        <property type="entry name" value="PTS_EIIA_type-2_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00359">
        <property type="entry name" value="PTS_EIIA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55804">
        <property type="entry name" value="SSF55804"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51094">
        <property type="entry name" value="PTS_EIIA_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PTS EIIA type-2" evidence="1">
        <location>
            <begin position="5"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="156" mass="17335" checksum="28CEC436E558BE22" modified="2015-11-11" version="1">MKLTDFIVEEAIITEIKATEKEAVIREMVCSLRDSQKIHSKDVENIIKSLIKREELGSTGIGKGVAVPHTKHDCIKKIMGTIARSTNGVDFNALDGEPVYLFFLLLSPNDSAGAHLAALERISTVIRDNDFRRFLREANGKNGMVEILREVDGIQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWP1</accession>
    <name>A0A0M2UWP1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01018</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UbiD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000120">
        <property type="protein sequence ID" value="KKO20252.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20252">
        <property type="protein sequence ID" value="KKO20252"/>
        <property type="gene ID" value="BROFUL_01018"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1278"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016831">
        <property type="term" value="F:carboxy-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022390">
        <property type="entry name" value="HBDC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002830">
        <property type="entry name" value="UbiD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30108">
        <property type="entry name" value="PTHR30108"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01977">
        <property type="entry name" value="UbiD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03701">
        <property type="entry name" value="mena_SCO4490"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00148">
        <property type="entry name" value="TIGR00148"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010021"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20252.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="590" mass="67041" checksum="369DB62700B6CD81" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWS6</accession>
    <name>A0A0M2UWS6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative heme protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00762</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000096">
        <property type="protein sequence ID" value="KKO20518.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20518">
        <property type="protein sequence ID" value="KKO20518"/>
        <property type="gene ID" value="BROFUL_00762"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036280">
        <property type="entry name" value="Multihaem_cyt_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48695">
        <property type="entry name" value="SSF48695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644054" evidence="1">
        <location>
            <begin position="21"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20518.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="318" mass="36020" checksum="2976CF9D51813884" modified="2015-11-11" version="1">MFLWFAISLCHLLVFVQHLAIGGSNSHKADKMFPGPPSEMAYITGDENRVEKNTGENHKNKVMQSNYPAVTHSCIDRCHVNYLAYEAPYQKRIFSHRAHSPGKGFDCDLCHTNSAVGTETHGKLIVQDEDCLACHHKEKDVEDCRRCHVGIQEYREGNIKGFNAKVPDIMVRDVSCTGCHQLTYDGTAFKPARQKCIECHDSSDSYGKIYDIWKEILHNACMQYEEEETDTTPGNQHTTHHPDTLLVSQLMEATSQILARDIPQLHDAGGKDPAASAQQKIYSPVDLHNRQKFLQFLRSYGMHNIILSHLLLQSIKTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWZ2</accession>
    <name>A0A0M2UWZ2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PHB domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00702</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20583.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20583">
        <property type="protein sequence ID" value="KKO20583"/>
        <property type="gene ID" value="BROFUL_00702"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001107">
        <property type="entry name" value="Band_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036013">
        <property type="entry name" value="Band_7/SPFH_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01145">
        <property type="entry name" value="Band_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117892">
        <property type="entry name" value="SSF117892"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="domain" description="PHB" evidence="2">
        <location>
            <begin position="33"/>
            <end position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20583.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="389" mass="43918" checksum="6770954232F827B3" modified="2015-11-11" version="1">MHLGKFTAKYLIPIGIVVFLVLFVIGIKFFVIKVGVDQVGVRTIIWGVKRGLVQKDYGPGWHRAISGIDQWDLYDSTVQTLELAKHPSHQGHDERQEAAIRTADDYDVSADLIVKYQIKKGHAWKLREDLGVGERYKIIVENEIRDIARSVLGKMTERDLYNPEEKRKRADAFKVQLITRLSDRNVDIIDVLILEMRFDPQLERKIKNIKLAELDNVLNISKALAAEERGITQTIDADTEAIAQKIIGDKERSITVLDAETTKQTIEILAEADKYLIQKKAEGDLYKEQRVAEGNLLIKQAQAEGERLRREAISGMGGDIIVAMEAARNMNLADLNVSSLDINLLDVDEMATRFGVSDIKGKLRVDTKTFTQIQEMLNQPKSTDAAKPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX33</accession>
    <name>A0A0M2UX33_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Thiamin biosynthesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01180</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000126">
        <property type="protein sequence ID" value="KKO20105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20105">
        <property type="protein sequence ID" value="KKO20105"/>
        <property type="gene ID" value="BROFUL_01180"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1459"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004810">
        <property type="term" value="F:tRNA adenylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020536">
        <property type="entry name" value="ThiI_AANH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02568">
        <property type="entry name" value="ThiI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ThiI" evidence="3">
        <location>
            <begin position="3"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02568"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="354" mass="39488" checksum="CC409FBD92471D33" modified="2015-11-11" version="1">MAKALALLSGGLDSTLAIRVIQQQGIEVIALNFVTVFCRCTSHGSCKLEAVKVSEKFGIPIKVINTTERFLELVKKPKFGYGKNMNPCIDCRINIFRIAGEYMREIGADFIITGEVLGQRPMSQRKEAMKIIDKEANLTGLVLRPLCAKHMEPTIPEKTGLVDREKLLQIRGRSRKDQIQLADVFQIKDYPCSAGGCLLTDPEFAHRMRDLVNSCDAGVNDVNLLKVGRHFRLDQQTKAIVGRNEEDNARIESLSQEGDILLTLVDMPGPLTLLRGEITEEKIYLAARVTARYGKSHVLPTSKVSLRQVKNDVPHRVIEVVPMGQEEADNLILRKIFSDKISHEPSPATEFNVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX75</accession>
    <name>A0A0M2UX75_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01683</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000176">
        <property type="protein sequence ID" value="KKO19576.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19576">
        <property type="protein sequence ID" value="KKO19576"/>
        <property type="gene ID" value="BROFUL_01683"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19576.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="217" mass="24111" checksum="6C7E10E59F9D14F2" modified="2015-11-11" version="1">MKKGLTGVLVFLIVIAFGSKCQIFAHQMVHFDGTITISGLNEEITEEVKGVVDITQWGHDETNGNFDEAMFQFELVSEQSECGNLLDVGTATISGYRRNEYSITSEKFPLDLCEDGMAVVMERILNKHGKTVQDGLGLDECFSISDGGGITNSGKILKFANAYISNCKAIIMEDSVKVRFKIKPTLTTFDSGYQNRQDYPLEVAGKLTIHREDMHHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX77</accession>
    <name>A0A0M2UX77_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Chain A of ATP binding cassette transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">abca_3</name>
        <name evidence="5" type="ORF">BROFUL_01114</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20155">
        <property type="protein sequence ID" value="KKO20155"/>
        <property type="gene ID" value="BROFUL_01114"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1382"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="13"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="45"/>
            <end position="52"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="244" mass="27186" checksum="1ED9D2F225E5451B" modified="2015-11-11" version="1">MRPIWERGEELFLEAKKISVSYNSVRAIEEVSFRVDSGEIVALVGPNGAGKSTALKAIFGLIKLQAGDILFQDESIKGLRPDELVHKGISLVPDGRRLFPSMTVLENLEMGAFLRRDKNIQNDIEKIFGLFPALKQRIKQKAGTLSTGEQQMLAFGRAMMQRPKLLLADEPSVGLSPDYVDTIFEKIVEINKSGTSILLVEQNARMALEIAHRGYVFKIVSIFLEGAGKELLEKEDVKKVLWGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXB1</accession>
    <name>A0A0M2UXB1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative heme protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00761</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000096">
        <property type="protein sequence ID" value="KKO20517.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20517">
        <property type="protein sequence ID" value="KKO20517"/>
        <property type="gene ID" value="BROFUL_00761"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020942">
        <property type="entry name" value="Cyt_c_III_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036280">
        <property type="entry name" value="Multihaem_cyt_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02085">
        <property type="entry name" value="Cytochrom_CIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48695">
        <property type="entry name" value="SSF48695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrom_CIII" evidence="3">
        <location>
            <begin position="203"/>
            <end position="273"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20517.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="430" mass="48992" checksum="D9A159D92094085C" modified="2015-11-11" version="1">MFHEVRRLNKRLTIKLGIFTLVAIGFVVVVMFATISSPKQSRFCTKCHEDVVFTNACKKLPSEDIACQDCHRHEYSGATTTDLMNPVNAFTAMDVEIINQKCTQESCHPLNALSSDAVQYKKITPFQHKTHMVDFRENLSMRCTACHANLGGEKHFQLDIRTCDTCHFIDTRKFLRTYEEKPISDCTVCHKNIEITRDIYGKTFSHLEYEKEKKSLCADCHFNIVRGSGGVDEASCSQCHSEKVDYANDATRMHYYHTVKSKTPCTPCHTSIAHGWVNESDDQKKRGYRLLAAESGYEAQHLIMRGEGGMGIQGLPDPMYLATVNCSACHKDDFYAKVNTEVCIACHEVGFDKILFEQKLFVSSMMKRLKSLIKTAENQQTPEALPIIREAAVNYEFIRKDGSYGSHNIKYTKDLLGYSIEQLRRIIRKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXC7</accession>
    <name>A0A0M2UXC7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Lactamase_B domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00537</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000075">
        <property type="protein sequence ID" value="KKO20738.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20738">
        <property type="protein sequence ID" value="KKO20738"/>
        <property type="gene ID" value="BROFUL_00537"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12706">
        <property type="entry name" value="Lactamase_B_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="8"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20738.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="237" mass="27011" checksum="FAF40E552ED07F9B" modified="2015-11-11" version="1">MVFPAGFNVLVDPGPGCLVRCISSRPKMDPMKLDAIILTHRHLDHAADVNVMIEAMTEGGFKQRGALYTPEDALTEDPVVFQYVRSYILQIEIIREGGRYKLSDTVSFETPLRHQHPSETYGINFFTQNYTISLIVDTRFFPELLKYYTGEILIVNVVRYTVDKDMKSWLYHLSIADVKEIVNALKPKVTILNHFGMTMIKAQPRIVAERLSQEMGLKIIAAADGMKFHFADVKNEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXK2</accession>
    <name>A0A0M2UXK2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">VWFA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00711</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20592">
        <property type="protein sequence ID" value="KKO20592"/>
        <property type="gene ID" value="BROFUL_00711"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024163">
        <property type="entry name" value="Aerotolerance_reg_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011933">
        <property type="entry name" value="Double_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07584">
        <property type="entry name" value="BatA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13519">
        <property type="entry name" value="VWA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02226">
        <property type="entry name" value="two_anch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="57"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="689"/>
            <end position="707"/>
        </location>
    </feature>
    <feature type="domain" description="VWFA" evidence="2">
        <location>
            <begin position="92"/>
            <end position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00327"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="710" mass="79838" checksum="6EB5C44FB479EB60" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXP5</accession>
    <name>A0A0M2UXP5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02049</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19249">
        <property type="protein sequence ID" value="KKO19249"/>
        <property type="gene ID" value="BROFUL_02049"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2554"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037522">
        <property type="entry name" value="HD_GYP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006675">
        <property type="entry name" value="HDIG_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01966">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00277">
        <property type="entry name" value="HDIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51831">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51832">
        <property type="entry name" value="HD_GYP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HD-GYP" evidence="2">
        <location>
            <begin position="10"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="domain" description="HD" evidence="1">
        <location>
            <begin position="32"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="212" mass="24042" checksum="CAE993C3A191C235" modified="2015-11-11" version="1">MLVDNLRRAAQQNFLSTTEALLQAIDAKDAYTAGHSKRVSELAAFVAKELGKNESEIEVLRYGAYLHDIGKIGVGDLVLTKPSYLTQEEFGLMKRHSEIGYKIIAPIKFMEKCLPIVRHHHEWYNGKGYPDGLQGSDIPFEASILSIVDAYDAITTDRHYHKKYSHQKACEIITQGIDTQFTPTLTEKVLAIINRYHEECIPGERTEYSLTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXQ0</accession>
    <name>A0A0M2UXQ0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00658</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000087">
        <property type="protein sequence ID" value="KKO20622.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20622">
        <property type="protein sequence ID" value="KKO20622"/>
        <property type="gene ID" value="BROFUL_00658"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="56"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20622.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="77" mass="8716" checksum="0128836792D5DF3F" modified="2015-11-11" version="1">MLLCGILFHKVIYEERYIFFPFPQRREVDNDHVEPVIEILAKASLPDKFFQVPFGSADDADVDGDSSSPPTRSNSLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXR2</accession>
    <name>A0A0M2UXR2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02059</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19259.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19259">
        <property type="protein sequence ID" value="KKO19259"/>
        <property type="gene ID" value="BROFUL_02059"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2565"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.30">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009091">
        <property type="entry name" value="RCC1/BLIP-II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000408">
        <property type="entry name" value="Reg_chr_condens"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00415">
        <property type="entry name" value="RCC1"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00633">
        <property type="entry name" value="RCCNDNSATION"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50985">
        <property type="entry name" value="SSF50985"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00626">
        <property type="entry name" value="RCC1_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50012">
        <property type="entry name" value="RCC1_3"/>
        <property type="match status" value="7"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19259.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="377" mass="39246" checksum="891C1171FCAE73E1" modified="2015-11-11" version="1">MHTRHSMAYGLVISFVLCLLSGQAAFAAVIIQISCGGFHSLALRSDGTVWAWGLNVHGQLGDGTNSDRKTPAPVKGLDNVAAIAGGVWHSLALKRDGTVWAWGANWAGQLGDGTTRSRNTPVPVTDLRGITAIATKGQHSIVLKSDGTVWAWGRNEYGQLGDGTTTDRQTPVPTRAMEDVTSLAVGGYHSLARKADGSVLAWGSNQYGQVGDASTADRVIPVSLRGLEGIIGINCGGDHSIALKNNGVVLTWGFNQYGQLGDATADSRSTPCPVEGLKNVIATDGGGDHTLALKSDGTVWAWGSNNLGQLGDATNMGRGLPTLVKNLDHVTSVSCGGQHSLALRSDGTVWAWGLNKNGQLGDGSASNRNAPVPVVIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXS6</accession>
    <name>A0A0M2UXS6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00896</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000109">
        <property type="protein sequence ID" value="KKO20375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20375">
        <property type="protein sequence ID" value="KKO20375"/>
        <property type="gene ID" value="BROFUL_00896"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="103" mass="12462" checksum="C0A73ED5957ACA64" modified="2015-11-11" version="1">MAEKQYLILLDIDARKRHYHATEGRRVAKFAVQLEIKSDDEWKVVIRYDCTHNYAHKDCYNIKGQCKKINLYMNYEDALTLADDDINENWELYRRKFIRGDFP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXW6</accession>
    <name>A0A0M2UXW6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01479</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000151">
        <property type="protein sequence ID" value="KKO19811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19811">
        <property type="protein sequence ID" value="KKO19811"/>
        <property type="gene ID" value="BROFUL_01479"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="95" mass="11108" checksum="CCE32C0138C3BC2C" modified="2015-11-11" version="1">MKYEALKTFTVKTKEGGSLTLKPGQTIILKEEKALKLIKEGKIKPLPYLENDILRIPFNSPGRFHWWNRGQSILDTLKELNANEEIIKRYKFFSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXX1</accession>
    <name>A0A0M2UXX1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">LAB_N domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00840</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000105">
        <property type="protein sequence ID" value="KKO20415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20415">
        <property type="protein sequence ID" value="KKO20415"/>
        <property type="gene ID" value="BROFUL_00840"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008915">
        <property type="term" value="F:lipid-A-disaccharide synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009245">
        <property type="term" value="P:lipid A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011499">
        <property type="entry name" value="Lipid_A_biosynth_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07578">
        <property type="entry name" value="LAB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01259">
        <property type="entry name" value="LAB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="23"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="55"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="82"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="domain" description="LAB_N" evidence="2">
        <location>
            <begin position="29"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM01259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="121" mass="13997" checksum="1DF56E83116DFD3E" modified="2015-11-11" version="1">MNYAVTLAVTWFGQEHRLFGLDWSYLAILGFLGNAIFSTRFLIQWIVSEKAGKSVIPISFWYWSIAGSIIMCAYWIMERSPVGILAYLPNSFIYMRNLHLIRKHTRMAIAPTLTQVPHNEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXX3</accession>
    <name>A0A0M2UXX3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Ribonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_01979</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19319.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19319">
        <property type="protein sequence ID" value="KKO19319"/>
        <property type="gene ID" value="BROFUL_01979"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2463"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019307">
        <property type="entry name" value="RNA-bd_AU-1/RNase_E/G"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004659">
        <property type="entry name" value="RNase_E/G"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022967">
        <property type="entry name" value="S1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003029">
        <property type="entry name" value="S1_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30001">
        <property type="entry name" value="PTHR30001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10150">
        <property type="entry name" value="RNase_E_G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00575">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00757">
        <property type="entry name" value="RNaseEG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50126">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="S1 motif" evidence="6">
        <location>
            <begin position="40"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19319.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="506" mass="58229" checksum="A33124C6CEAB7B5C" modified="2015-11-11" version="1">MDKKMLINAVEPEECRIAILENNVLEELYIERSSREQIAGNIYKGRVVNIEPSIEAAFVDIGLKKNGFLHASDVFIPSENGSQSPDTDAHGKPHREFRKIRDILHPGKEVLVQVTKESIGTKGPSLTTYISLPGRFLVLTPDVPRHGVSRKIASDEERLRLKKILAGLNPPANIGFIIRTAGEQQTKKEIHKDFHYLLKLWKNIEKRTKDVKAPATIYQESDLVIRVIRDIFSTNIQEIIVDTEAVYERTRDFLRMIMPKSEKLLTRYSEDKPLFHKYNIEQEIEEINCKKIRLPRGGSIVIEQTEALVAIDVNSGKFKEECDPEETAFKTNLKAAKEIARQIRLRDLGGMIVIDFIDMRTESHIRAIEKVIVDALKRDKARTKMLKMSKFGTIELTRQRIRSSLRDVLFEECKFCRGTGYAKTVESLCLNAMRDLKFAMYSPQISKIEIFANPAVANYLQNQKRKQMIEIEESYNKKIHIFSTSNHEYGKVDIRYLNQKDEPVVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY03</accession>
    <name>A0A0M2UY03_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00308</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000035">
        <property type="protein sequence ID" value="KKO20973.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20973">
        <property type="protein sequence ID" value="KKO20973"/>
        <property type="gene ID" value="BROFUL_00308"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20973.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="34" mass="4070" checksum="BF0CE929C62A3B25" modified="2015-11-11" version="1">MFTIPCRGEAFAIHWHTGIHTPVRQMLRPYLFKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY41</accession>
    <name>A0A0M2UY41_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00482</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000065">
        <property type="protein sequence ID" value="KKO20792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20792">
        <property type="protein sequence ID" value="KKO20792"/>
        <property type="gene ID" value="BROFUL_00482"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20792.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="45" mass="5006" checksum="E229253F6C9221F3" modified="2015-11-11" version="1" fragment="single">PHVIKDIASVIARVLSEAISRFHKGEVVAAVPRYAILKMLVKCEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYA9</accession>
    <name>A0A0M2UYA9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00673</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20555">
        <property type="protein sequence ID" value="KKO20555"/>
        <property type="gene ID" value="BROFUL_00673"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="88" mass="9923" checksum="668AC13C3D5FA181" modified="2015-11-11" version="1">MFVGEGLLRFARNDNVPYVIKGIASVIARVLSEAISRFHNGELVAALLRYEISCAEIRAICAICSFKRFYFFAIRLAMAFLLSRTSSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYB4</accession>
    <name>A0A0M2UYB4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Cytochrome c nitrate reductase small subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01309</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000138">
        <property type="protein sequence ID" value="KKO19961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19961">
        <property type="protein sequence ID" value="KKO19961"/>
        <property type="gene ID" value="BROFUL_01309"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1617"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022900">
        <property type="term" value="P:electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3820.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036280">
        <property type="entry name" value="Multihaem_cyt_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005126">
        <property type="entry name" value="NapC/NirT_cyt_c_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038266">
        <property type="entry name" value="NapC/NirT_cytc_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017571">
        <property type="entry name" value="NrfH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03264">
        <property type="entry name" value="Cytochrom_NNT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48695">
        <property type="entry name" value="SSF48695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03153">
        <property type="entry name" value="cytochr_NrfH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="21"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrom_NNT" evidence="4">
        <location>
            <begin position="32"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="174" mass="19905" checksum="3E61FADC8383AF79" modified="2015-11-11" version="1">MFAQRKSRLFIPIQRRGPMRILSGLKLFAMSLCCCGGIFVGLCCYTFYYANGASYLSNEPAACVNCHIMREQYDDWQKANHHAVATCNDCHIPHEFIAKYVTKLKNGFWHSKGFTLQDFHEPIRILPANRVVLQKNCLYCHRAFVSEIATHPGNDQQMLDCIHCHSRVGHGPSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYD9</accession>
    <name>A0A0M2UYD9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Type IV fimbrial assembly protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01255</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GSP E family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO19986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19986">
        <property type="protein sequence ID" value="KKO19986"/>
        <property type="gene ID" value="BROFUL_01255"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1552"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001482">
        <property type="entry name" value="T2SS/T4SS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037257">
        <property type="entry name" value="T2SS_E_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007831">
        <property type="entry name" value="T2SS_GspE_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00437">
        <property type="entry name" value="T2SSE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05157">
        <property type="entry name" value="T2SSE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160246">
        <property type="entry name" value="SSF160246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00662">
        <property type="entry name" value="T2SP_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="T2SP_E" evidence="2">
        <location>
            <begin position="399"/>
            <end position="413"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS00662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="582" mass="65062" checksum="31097D3723EF5BF2" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYF0</accession>
    <name>A0A0M2UYF0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01277</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20006.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20006">
        <property type="protein sequence ID" value="KKO20006"/>
        <property type="gene ID" value="BROFUL_01277"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20006.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="146" mass="17417" checksum="C38AD72F6530286B" modified="2015-11-11" version="1">MYIIWFYNLGNTIEKPILVPVEVFLMTDTGEKYLDAYYPEIMEHVAQLDGDYKEGKKYQYAAIARGELPPKTLKHCVAMFEDIDPKARRLDIFVTGISHFFFWRWRVVDYSYKITYEKEQNYWKLIEHGMTKDASHRANDLESGNW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYL6</accession>
    <name>A0A0M2UYL6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01720</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000178">
        <property type="protein sequence ID" value="KKO19569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19569">
        <property type="protein sequence ID" value="KKO19569"/>
        <property type="gene ID" value="BROFUL_01720"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038717">
        <property type="entry name" value="Tc1-like_DDE_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13358">
        <property type="entry name" value="DDE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0814">Transposable element</keyword>
    <feature type="domain" description="DDE_3" evidence="2">
        <location>
            <begin position="222"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="365"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="365" mass="42184" checksum="3AE56A398F14C557" modified="2015-11-11" version="1" fragment="single">SLSPEQLCKLENTARSRTAPLREVKRAQVLLKKYQEESITAIQKSIGLSRETIYKYIEKALALGPEEALRDKYHRPKEPTITENAKMWVVNIACTKPKDHGYAAELWTQSLLAKHTRKYAPQEGYACLSKASKATIHRILKEHPVQPHKIRYYLEKRDPEFKRKMEDVLMVYQEVNLQNKQDASEKISGNRTITVSVDEKPGVQAIKNIAPDLKPIAGKCPQVLRDYEYKRLGTVSILAALDLHTGHVIAQVHERHRSKEFIELLKELDAFYPSAYTIRIVLDNHSAHISKETLRYLSSRPNRFVYVHTPKHGSWLNLVETLFGKMARTFLKHIRVDSVVELRNRILKGISEINEAPVIHRWKKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYN7</accession>
    <name>A0A0M2UYN7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">ATP synthase subunit c</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">ATP synthase F(0) sector subunit c</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">F-type ATPase subunit c</fullName>
            <shortName evidence="13">F-ATPase subunit c</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">Lipid-binding protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13 15" type="primary">atpE</name>
        <name evidence="15" type="ORF">BROFUL_01696</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12 13">F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.</text>
    </comment>
    <comment type="function">
        <text evidence="13">Key component of the F(0) channel; it plays a direct role in translocation across the membrane. A homomeric c-ring of between 10-14 subunits forms the central stalk rotor element with the F(1) delta and epsilon subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="13">Cell membrane</location>
            <topology evidence="13">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 13">Belongs to the ATPase C chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000176">
        <property type="protein sequence ID" value="KKO19589.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19589">
        <property type="protein sequence ID" value="KKO19589"/>
        <property type="gene ID" value="BROFUL_01696"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2101"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045263">
        <property type="term" value="C:proton-transporting ATP synthase complex, coupling factor F(o)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008289">
        <property type="term" value="F:lipid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01396">
        <property type="entry name" value="ATP_synth_c_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005953">
        <property type="entry name" value="ATP_synth_csu_bac/chlpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000454">
        <property type="entry name" value="ATP_synth_F0_csu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020537">
        <property type="entry name" value="ATP_synth_F0_csu_DDCD_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038662">
        <property type="entry name" value="ATP_synth_F0_csu_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002379">
        <property type="entry name" value="ATPase_proteolipid_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035921">
        <property type="entry name" value="F/V-ATP_Csub_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10031">
        <property type="entry name" value="PTHR10031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00137">
        <property type="entry name" value="ATP-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00124">
        <property type="entry name" value="ATPASEC"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81333">
        <property type="entry name" value="SSF81333"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01260">
        <property type="entry name" value="ATP_synt_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00605">
        <property type="entry name" value="ATPASE_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11 13" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="13" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 13" id="KW-0138">CF(0)</keyword>
    <keyword evidence="6 13" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="15" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8 13" id="KW-0406">Ion transport</keyword>
    <keyword evidence="9 13" id="KW-0446">Lipid-binding</keyword>
    <keyword evidence="10 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 13" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 13" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="54"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-synt_C" evidence="14">
        <location>
            <begin position="13"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="site" description="Reversibly protonated during proton transport" evidence="13">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022547"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00025198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01396"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF00137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KKO19589.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="88" mass="9148" checksum="8BF568BAE181425C" modified="2015-11-11" version="1">MDAKTVVISVSIIAAALVMAIGGYGPAKALGKALTEALDAIARQPEASDKIMRALFVGMALIESIAIYAFVIALIVLFANPLIGYIVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYY3</accession>
    <name>A0A0M2UYY3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01616</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19684">
        <property type="protein sequence ID" value="KKO19684"/>
        <property type="gene ID" value="BROFUL_01616"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019270">
        <property type="entry name" value="DUF2283"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10049">
        <property type="entry name" value="DUF2283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="73" mass="8076" checksum="AC63256A9F8CAA2F" modified="2015-11-11" version="1">MEAIKILEKKENLNWDYDEEADVLYISVGEPQKALGVDIGEGAVVRYIEATGEVVGLTLIGVKERVLRSLKSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ30</accession>
    <name>A0A0M2UZ30_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_01572</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000164">
        <property type="protein sequence ID" value="KKO19724.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19724">
        <property type="protein sequence ID" value="KKO19724"/>
        <property type="gene ID" value="BROFUL_01572"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1935"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025662">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025944">
        <property type="entry name" value="Sigma_54_int_dom_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00158">
        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01590">
        <property type="entry name" value="HTHFIS"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00675">
        <property type="entry name" value="SIGMA54_INTERACT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00688">
        <property type="entry name" value="SIGMA54_INTERACT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="7">
        <location>
            <begin position="4"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="6">
        <location>
            <begin position="143"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="5">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19724.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="462" mass="52511" checksum="BEA0F93DC428EDB1" modified="2015-11-11" version="1">MGSKVLIVDDEKLMRISLESQLRKDGYQVKSVDNATEGLKMVKSEDYDVVVTDLRLSGMNGMELLKEIKKYNQEIIVVIMTAYGTLESAVSAIKDGAYDYIAKPFSTDELMIKLQRALHHKNTAAEVNRLRGEIQAEFEFCNIVGKSESMKKVLEIVKSVSERDTTVLIRGESGTGKEKIAGAIHYHSSRKTGPFIRVSCAALNREILESELFGHEKGAFTGAIKTRRGRFELADGGSIFLDDVDDIPVDMQVKLLRVLQERTFERVGGEETLGVNVRIICATKKDLLERVKEGYFREDLFYRLNVVQISIPSLRERKEDIPLLINYFLRKFVSQYEDALPDVSPEAKEVLMAYDWPGNVRELENVIEHAVAFSKSKGISLETLPEYLRKYDVNTDLLSMDLYNKQSINLQDALTEVEKKLIQWAHQKTNGNQVKMAEILGVPRTTLRNRLVRLQLFDKSMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZA2</accession>
    <name>A0A0M2UZA2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Thioredoxin reductase</fullName>
            <ecNumber evidence="3">1.8.1.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_00970</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>[thioredoxin]-dithiol + NADP(+) = [thioredoxin]-disulfide + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:20345"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.8.1.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
        <text evidence="4">Binds 1 FAD per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.8.1.9" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000117">
        <property type="protein sequence ID" value="KKO20296.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20296">
        <property type="protein sequence ID" value="KKO20296"/>
        <property type="gene ID" value="BROFUL_00970"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1218"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004791">
        <property type="term" value="F:thioredoxin-disulfide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019430">
        <property type="term" value="P:removal of superoxide radicals"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008255">
        <property type="entry name" value="Pyr_nucl-diS_OxRdtase_2_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005982">
        <property type="entry name" value="Thioredox_Rdtase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01292">
        <property type="entry name" value="TRX_reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00573">
        <property type="entry name" value="PYRIDINE_REDOX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4" id="KW-0521">NADP</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2 3" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="5">
        <location>
            <begin position="5"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20296.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="318" mass="34355" checksum="6C9764545C0D4C84" modified="2015-11-11" version="1">MNTDYDVIIVGGGPAALAAAVYTCRALLKTVIFEKQVVGGQLVGTDLIENYPGFPEVISGVDLIQRMEAQAKRFGAEIRYEEVLKLQVENGLKIVTTDTDTYGSHAVILAAGAEPKKLGVPGEKEFYGRGISYCATCDGAFYRGKDVVVVGGGDSAITEAIFLTKYANTVQIIHRRDAFRATKIYLDEALSNPKIKVVFNTIVESIHGQDKVDGIVTQHVITKEKKDMPCQGVFVFIGSVPNTGFLGNLLCVDVGCHIETNIHMETAIEGLYAVGDIRKNSYRQIATAIGEGVTAAIAAEHKLSELRALGMAKKRNLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0F9</accession>
    <name>A0A0M2V0F9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00607</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000084">
        <property type="protein sequence ID" value="KKO20666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20666">
        <property type="protein sequence ID" value="KKO20666"/>
        <property type="gene ID" value="BROFUL_00607"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="492" mass="48075" checksum="73783C0EBDA3805B" modified="2015-11-11" version="1">MNISGAITLTAPTAATTNLTVGAGVLNAASITIPGSATASRFATVSVSTGTITITGSITFSGTAAQARFISTGASTVNVGGNFGSGGNLNTSATGTINFNGSVAQSIGAYTTYYNIAINNTSGGVSFLGTTTIGGTLTVTTGTLTFGAVTTTVSGATSITGVVTISSTTGTKIFTGLVTINPGGVWNNTANEAVSFRGGITHNGTTFTAGTGVHTFDTNSRAIGGTTAISIPSVTVTGVTLTNNTTLTVNTALSGSGGLTQGSGATLNIGGTSAITTLTASVNPNTVNYTSTAANQTVVGTTYHHLAINKSARTATLGGNIIINGDLTITTGTLNTGSNACIVNGTTNITGTLGITNATWTKSFVGLVTVNAGGTWNNSANSAVTFQGGITHNGTTFTAGTGVYTFDTNNQALGGTTAISIPSVTVTGVTLTNNTTLTVNTALGGTGGLTQGSGATLNIGGTSTIVSLDASVDSNTINYTSATAVQTVVGTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0H9</accession>
    <name>A0A0M2V0H9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Radical SAM superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_00593</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000082">
        <property type="protein sequence ID" value="KKO20686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20686">
        <property type="protein sequence ID" value="KKO20686"/>
        <property type="gene ID" value="BROFUL_00593"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.747"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023885">
        <property type="entry name" value="4Fe4S-binding_SPASM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13186">
        <property type="entry name" value="SPASM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="5">
        <location>
            <begin position="81"/>
            <end position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="326" mass="37846" checksum="0AB53094E5C5A43E" modified="2015-11-11" version="1">MCCPAWLDTSIGNLQDQSVQEIWNGKKAQEIRRSILDGSFTYCNHSRCAFLQTVSGPVAKVEDVKDEDLHAVIEKELTILPYGPRQIICTYDKSCNLSCPSCRTKLIIERRNKKQILKIQDKIQNEAIQDAYYLHITGSGDPFGSPFFRKWLQTMKREDIPRVKIIHLQTNAQLWTPKMWGTIAKDIQHLIKNADISIDAANPETYAINRRGGSFERLLNNLEFISTLRKNGPLEWVGISMVVQENNFREMPDFVRLGKRFHFDTVYFSQLVNYGTYSEEEFRNRAIHFPTHSRYSEFLGILKDEIFHDPLVHLGNLTETMRRSDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0S4</accession>
    <name>A0A0M2V0S4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_00961</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000116">
        <property type="protein sequence ID" value="KKO20329.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20329">
        <property type="protein sequence ID" value="KKO20329"/>
        <property type="gene ID" value="BROFUL_00961"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022791">
        <property type="entry name" value="L-PG_synthase/AglD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03706">
        <property type="entry name" value="LPG_synthase_TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00374">
        <property type="entry name" value="TIGR00374"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="46"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="123"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="157"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="232"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="318"/>
            <end position="335"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20329.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="355" mass="40247" checksum="BCA620A17F674277" modified="2015-11-11" version="1">MAFRPITIKKGLKIFIGLTVLAICLLLVFTSDIKTLQTLKLIDHRFLLLSLTLICLSWFFDVLRFRVLTKIAGTKTPFLYGTKALLSYTFVSNITPSSAGGETVLIYLLNQSGVALGKATAIIFLRTIITMIFFAIGGLLTIYFYYDLLSNASLKILFHYVAIFLAITVIVIIYLLFAPLSARKGLNFLFLYFEKITFFKKNFSWLRHRLFRVVNDFKSSLKEVVQEERWRLLLVIFYTVLMIAAQFLVAPLLLAGLGCKVNVMNTVRIQFVLNFLLYYMPTPGGSGASEGVGYALFSPLVPSSTIGVFLVLWKFLTMYVWTVIGGIIIAKTIGMKHLEELSKNRETFHQNEKKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0U3</accession>
    <name>A0A0M2V0U3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00498</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000069">
        <property type="protein sequence ID" value="KKO20771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20771">
        <property type="protein sequence ID" value="KKO20771"/>
        <property type="gene ID" value="BROFUL_00498"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="172" mass="19214" checksum="D2CCFD77D428F1FB" modified="2015-11-11" version="1">MAKRTKKLDLIDTLARVKECLSCLPGEAEKQRMSQMIPEIIKELGVLQEGIGRFPDASEKHQVSHAIHTLVSFFDTLKDKPLLAEILLPKKTKPGKTKGAAVDINTLQNQLENLPTEKILEELTKLKKDVLVELSARLNITVNKKLTKDALADRIFKLGFANTRGYNLLSGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V118</accession>
    <name>A0A0M2V118_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00426</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000057">
        <property type="protein sequence ID" value="KKO20841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20841">
        <property type="protein sequence ID" value="KKO20841"/>
        <property type="gene ID" value="BROFUL_00426"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="250" mass="27368" checksum="97E022B031ABCDBD" modified="2015-11-11" version="1">MKNRFCQTGSLKGFIAWLGIALITGSVAIQNPVNAEGQTKYSRDFFDTGELIKMKDPLASMLGAMDKGDVFVYTYADAVKFAGHSCPAVAGAYKSTQMALKALYGNEIPVRGNIRVTFKGGVDYKVNGPISQIVTMITGAAAESGFRGFGPAGKHERRNLMTFDQEHTPEPIATCAMTFQRTDTGKKAEIMYCVDHVPSNERMDKLIPLALSGKASEDELKEFGNLWQERVKTILLNPPEGAFIVKEVKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V153</accession>
    <name>A0A0M2V153_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00388</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000051">
        <property type="protein sequence ID" value="KKO20881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20881">
        <property type="protein sequence ID" value="KKO20881"/>
        <property type="gene ID" value="BROFUL_00388"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20881.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="81" mass="9452" checksum="4C3BA4AFFC4C72BF" modified="2015-11-11" version="1">MIDPEKIIYSINIDDIQNVAEQELERKLTAKELRLVEGKVGDYINWYEASLMQLMQQILNHEDLAAKRLKPIVSRTGLRLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1A9</accession>
    <name>A0A0M2V1A9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycosyltransferase family 2</fullName>
            <ecNumber evidence="2">2.4.1.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00771</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.-" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000098">
        <property type="protein sequence ID" value="KKO20504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20504">
        <property type="protein sequence ID" value="KKO20504"/>
        <property type="gene ID" value="BROFUL_00771"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.977"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="12"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="808" mass="90518" checksum="5DA33825AECE215F" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1Q1</accession>
    <name>A0A0M2V1Q1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4062 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00194</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000022">
        <property type="protein sequence ID" value="KKO21076.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21076">
        <property type="protein sequence ID" value="KKO21076"/>
        <property type="gene ID" value="BROFUL_00194"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025139">
        <property type="entry name" value="DUF4062"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13271">
        <property type="entry name" value="DUF4062"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4062" evidence="1">
        <location>
            <begin position="31"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13271"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21076.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="342" mass="39015" checksum="045666DF5ABFDD7B" modified="2015-11-11" version="1">MQKRCTLHLNIGAATPQSISITMKDKKEISVFIASPGDVTAERTVVREICEDLNKSALLKPYGISFQAIGWEDAFPSPGRPQELINRLVEECDIFVCIFHKRFGSPTGKEASGTLEEFLLAYDSWKSLKKPHIMTYFKEVQIRSRKEQEDPQLTKVLDLKDKIEEEKLLLFEEFSTTDDFCVKIKDHLEKWTAESAKGWEKINGKISKLIPETELPLIIPPTYKNWISMRCEKMDIDKLVDTKDKGLISLTLPETFIPLYAAPPDKKTKAEMFIPFYTEQIGKKTKQEQKEIEKGQSAVDIETLIAEHEYLLISGQAGSGKTTLLKYLAYTIEPAHKLKNKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1R0</accession>
    <name>A0A0M2V1R0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00660</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000087">
        <property type="protein sequence ID" value="KKO20624.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20624">
        <property type="protein sequence ID" value="KKO20624"/>
        <property type="gene ID" value="BROFUL_00660"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.838"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021737">
        <property type="entry name" value="Phage_phiKZ_Orf197"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11750">
        <property type="entry name" value="DUF3307"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="99"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="131"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="184"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="224"/>
            <end position="247"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20624.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="269" mass="30458" checksum="C60FCA837E58E068" modified="2015-11-11" version="1">MYHPLSQSDISLLLRLVVAHVVADFFLQQDSKMEQWPGNTWRSCWLYLHGICAGALAYTLAGIWNALWLPFVIFIAHVLRDALKPQGEDTARFFALDHLGHGIIILGCWILLIPGTLSDIVLFLFTFTSSVRFWTVILAYILVIWPAGALIGKITKPWRSEITKETPFQGLEKAGLWIGRLERVLILTFILLNHFEAIGFLIAAKSILRFGETRTLKGRKEAEYILIGTMISFVISIILGIFTSWMLHYPLVMDQGNLDNVGQGNLFEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V3G4</accession>
    <name>A0A0M2V3G4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative geranylgeranyl reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00043</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000007">
        <property type="protein sequence ID" value="KKO21204.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21204">
        <property type="protein sequence ID" value="KKO21204"/>
        <property type="gene ID" value="BROFUL_00043"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21204.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="930" mass="104999" checksum="C9FA688824B95290" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQA4</accession>
    <name>A0A0M2UQA4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">dTDP-4-dehydrorhamnose reductase</fullName>
            <ecNumber evidence="2">1.1.1.133</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03238</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>dTDP-beta-L-rhamnose + NADP(+) = dTDP-4-dehydro-beta-L-rhamnose + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:21796"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57510"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:62830"/>
            <dbReference type="EC" id="1.1.1.133"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Carbohydrate biosynthesis; dTDP-L-rhamnose biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the dTDP-4-dehydrorhamnose reductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.133" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000296">
        <property type="protein sequence ID" value="KKO18067.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18067">
        <property type="protein sequence ID" value="KKO18067"/>
        <property type="gene ID" value="BROFUL_03238"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3990"/>
    <dbReference type="UniPathway" id="UPA00124"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008831">
        <property type="term" value="F:dTDP-4-dehydrorhamnose reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019305">
        <property type="term" value="P:dTDP-rhamnose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005913">
        <property type="entry name" value="dTDP_dehydrorham_reduct"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029903">
        <property type="entry name" value="RmlD-like-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10491">
        <property type="entry name" value="PTHR10491"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04321">
        <property type="entry name" value="RmlD_sub_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0521">NADP</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RmlD_sub_bind" evidence="3">
        <location>
            <begin position="3"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010944"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU364082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF04321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18067.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="290" mass="31753" checksum="065DE52F9BCC5B78" modified="2015-11-11" version="1">MKKLLVTGACGFLGWNICQAARQTWEITGTAFSHVEAIAGVKITKVDLTDFAALKKLFQTVRPDAVIHTAAKTSLNFCQTHRAESQRVNVDASVNIAGLCADYGIPCVFTSTDMVFDGLNPPYREEDPVCPVNFYGEQKALAEEGMMKRHPMTAVCRLSLMFGISGPGATSFIQPMIAAMREGRELQLFTDEFRTPVSADTAASGIFLSLEKVHGPLHIGGNERISRYEFGAMLMNTLNISAARLIPSRQKEVIMAAPRPPDVSLDNTKARSLGFRPLPLSEEMKKLVTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQR8</accession>
    <name>A0A0M2UQR8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Antitoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03110</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Antitoxin component of a type II toxin-antitoxin (TA) system.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the phD/YefM antitoxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000286">
        <property type="protein sequence ID" value="KKO18212.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18212">
        <property type="protein sequence ID" value="KKO18212"/>
        <property type="gene ID" value="BROFUL_03110"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006442">
        <property type="entry name" value="Antitoxin_Phd/YefM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036165">
        <property type="entry name" value="YefM-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02604">
        <property type="entry name" value="PhdYeFM_antitox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143120">
        <property type="entry name" value="SSF143120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009981"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18212.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="97" mass="10710" checksum="56BF4210100EA97B" modified="2015-11-11" version="1">MKTAAISELKASISEYLSKVRAGEEVLVTDRGKPIAKLIPLDRDETDVPAHLLMLEKAGLVRIGRGKIKASFWDLARPKDEKGLALKALISERGEER</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQU5</accession>
    <name>A0A0M2UQU5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Phosphate starvation-induced protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03298</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000301">
        <property type="protein sequence ID" value="KKO18020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18020">
        <property type="protein sequence ID" value="KKO18020"/>
        <property type="gene ID" value="BROFUL_03298"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4066"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003714">
        <property type="entry name" value="PhoH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02562">
        <property type="entry name" value="PhoH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PhoH" evidence="3">
        <location>
            <begin position="126"/>
            <end position="329"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="330" mass="36782" checksum="82B2BAB838EA0B84" modified="2015-11-11" version="1">MNQKVNVQKDSGIKEYFHNPFAHQNTLILENDAEASILYGSNDRYLRLVRDAFQIQLVARHGVLKLEGEKERVSASRKVLSGLLEIVRTTGRLDADDVEQAIVDVKGETGDETAQTIDVFQRGLFIKPKTEGQAKYIEAIKKNDLVFCIGPAGTGKTYLAVAMALSFLKSGRIRRIVLARPAVEAGEKLGYLPGDIKAKVNPYLRPLYDAIADMMDVGHVKKYLESDIIEILPLAYMRGRTLNDAFIILDEAQNCTVKQMKTFLTRLGVKSKVVVTGDITQVDLPGGELSGLIDVQERLMAIQDISFVYLTKADIIRHKLVQDIVDAYEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR01</accession>
    <name>A0A0M2UR01_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Rubrerythrin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03246</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000296">
        <property type="protein sequence ID" value="KKO18075.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18075">
        <property type="protein sequence ID" value="KKO18075"/>
        <property type="gene ID" value="BROFUL_03246"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4001"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01041">
        <property type="entry name" value="Rubrerythrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012347">
        <property type="entry name" value="Ferritin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009040">
        <property type="entry name" value="Ferritin-like_diiron"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024934">
        <property type="entry name" value="Rubredoxin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003251">
        <property type="entry name" value="Rubrerythrin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02915">
        <property type="entry name" value="Rubrerythrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50905">
        <property type="entry name" value="FERRITIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50903">
        <property type="entry name" value="RUBREDOXIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ferritin-like diiron" evidence="2">
        <location>
            <begin position="1"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="domain" description="Rubredoxin-like" evidence="1">
        <location>
            <begin position="129"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18075.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="163" mass="18152" checksum="1C17B6598B3E25B8" modified="2015-11-11" version="1">MSTKDNLKDAFAGESQANRKYLAFAKKADEEGFKQVAKLFRAAAEAETVHAHNHLRVLGGIKTTKENIQEAVEGETYEFTKMYPQFIEEAKKEGNKEALRSFEIANKVENIHAGLYQKALQNLGKNEDVDYYVCQVCGNTVEKAAPDTCPICGAPKSRFTKVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR61</accession>
    <name>A0A0M2UR61_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02956</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000278">
        <property type="protein sequence ID" value="KKO18357.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18357">
        <property type="protein sequence ID" value="KKO18357"/>
        <property type="gene ID" value="BROFUL_02956"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009740">
        <property type="term" value="P:gibberellic acid mediated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006597">
        <property type="entry name" value="Sel1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001440">
        <property type="entry name" value="TPR_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00515">
        <property type="entry name" value="TPR_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00671">
        <property type="entry name" value="SEL1"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="5"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0939">Gibberellin signaling pathway</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0802">TPR repeat</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="5">
        <location>
            <begin position="59"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="5">
        <location>
            <begin position="93"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="5">
        <location>
            <begin position="127"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="5">
        <location>
            <begin position="161"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="5">
        <location>
            <begin position="195"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00019143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18357.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="251" mass="28416" checksum="00C4DD4B8353B2B8" modified="2015-11-11" version="1">MLIVFKRSHVMRTHIYIGIVLMLFILGNTGYTQDQGKDDSLDAAINSFLQAVEKNPHHADAHYNLGILYSEKGMREEAVAEYKKTLELEPNYVKAHNNLGVIYYETDRFDEAIECFKKALAASPEYLEAQYNLGIAYYGKKQYADAVAAFKKAVEINPKFEKGYYNLGVTYATMDSPDDSLAAFKKTVSINPQFSDAYYNMGVIYTKKNQLDEAIKSLQKALELNPNDDKSHFALGVIYQVKRKTKLSGGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR63</accession>
    <name>A0A0M2UR63_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02726</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000253">
        <property type="protein sequence ID" value="KKO18578.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18578">
        <property type="protein sequence ID" value="KKO18578"/>
        <property type="gene ID" value="BROFUL_02726"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="120"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18578.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="155" mass="16977" checksum="51A07C61213FF5CD" modified="2015-11-11" version="1">METSVLISLLTCAFALGTMIAGIVGYYVGYLINRAKLPAPRRVAILKDLLIEVSRQIAEVHKSTHEKTMQFQECTIEVAFEAESQTDLKSKSEIPQVYAVELGGSSKETHSNKITLKYQPIANQPAPQAPAIPVNSAENLPPGWTIQPPDTSKKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URG3</accession>
    <name>A0A0M2URG3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Phosphomannomutase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_02604</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the phosphohexose mutase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18653">
        <property type="protein sequence ID" value="KKO18653"/>
        <property type="gene ID" value="BROFUL_02604"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3231"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016868">
        <property type="term" value="F:intramolecular transferase activity, phosphotransferases"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005844">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016055">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-I/II/III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005845">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005846">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005843">
        <property type="entry name" value="A-D-PHexomutase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036900">
        <property type="entry name" value="A-D-PHexomutase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016066">
        <property type="entry name" value="A-D-PHexomutase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005841">
        <property type="entry name" value="Alpha-D-phosphohexomutase_SF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02878">
        <property type="entry name" value="PGM_PMM_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02879">
        <property type="entry name" value="PGM_PMM_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02880">
        <property type="entry name" value="PGM_PMM_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00408">
        <property type="entry name" value="PGM_PMM_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00509">
        <property type="entry name" value="PGMPMM"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53738">
        <property type="entry name" value="SSF53738"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55957">
        <property type="entry name" value="SSF55957"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00710">
        <property type="entry name" value="PGM_PMM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4 6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PGM_PMM_I" evidence="8">
        <location>
            <begin position="64"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_II" evidence="9">
        <location>
            <begin position="227"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_III" evidence="10">
        <location>
            <begin position="319"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_IV" evidence="7">
        <location>
            <begin position="432"/>
            <end position="498"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO18653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="510" mass="57265" checksum="BBECC542CB780FA6" modified="2015-11-11" version="1">MKKGFISEKADERQYRCPGESYTITDSVCKGRQRVNYPKCNVCLERVEMRNSSQSHTEPKLSRDIFKSYDIRGKYPAELNDTAAHKIGTSIAQFFKEQDPGVKNIAVGRDMRTSSKSLANALIEGLCTAGLNVVNLGVVSTEMTYFAVGHYQYDGGIMVTASHNPAEYNGFKICRKQAIPVSFETGISRISKLTSQYHPPRGEQLGKVVQNDIFGDYKKHVLKFAGNLRHLRIVVDAGNGMAGKTIPVVCEGLPLEIIPLYFELDGTFPNHEANPLNPENMVDLQKKVRETRAHLGVAFDGDADRCFFVDETGRIIGCDIITALIARQVLEREKGATILYDLRSSWVVPEEIKAGGGVPYRERVGHAYMKATLREKNAFFGGELSGHYYFKNNYYSDSGMIAFLMVLDILSAKRVPFSNIVSPLRRYYSTGEINFEVDDKDEKIAEIARKFSDGNVDYLDGVTVEYQDWWFNVRKSNTEPLLRLNVEGKTPEIMEKGKKLLISIIHGKSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URS9</accession>
    <name>A0A0M2URS9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02720</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000253">
        <property type="protein sequence ID" value="KKO18572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18572">
        <property type="protein sequence ID" value="KKO18572"/>
        <property type="gene ID" value="BROFUL_02720"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="84" mass="10102" checksum="1A4D5DA1D87B017A" modified="2015-11-11" version="1" fragment="single">MNEKSNTVTIGFRTRGIWTTNDLTLLSTSIGNIYDLFLTKNIFHKSQVSYWENLDHWFHEYEKYIVSERKRTFCKSARSIFYLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URW7</accession>
    <name>A0A0M2URW7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02474</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal stress protein A family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18813">
        <property type="protein sequence ID" value="KKO18813"/>
        <property type="gene ID" value="BROFUL_02474"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006015">
        <property type="entry name" value="Universal_stress_UspA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006016">
        <property type="entry name" value="UspA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00582">
        <property type="entry name" value="Usp"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01438">
        <property type="entry name" value="UNVRSLSTRESS"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Usp" evidence="2">
        <location>
            <begin position="1"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="domain" description="Usp" evidence="2">
        <location>
            <begin position="159"/>
            <end position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008791"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="282" mass="30534" checksum="D416CCFE662E45C4" modified="2015-11-11" version="1">MIKRILVPTDGSDNSLAAADYAVAIAGLFKASIRGLFVKDVKVLTGPLIHDIGTSIGGMVPYGTFNQTIREMLESQADAALALVEGKCAQAGVSFAQEIREGVVSHEIVKSADDCDLISMGKMGIHAEWRDVFLGTNVEFVVRQTHKPVLISPSEYKPFTRMLIAYDGSAFADKALRSGAEIAVAMKLPITVVCVADKKDAALEPLSKAKTFLEGYQLTVNTVAKEGADHAKGILELCNDEDEKFDILVMGAYGHSRIQEMILGSTTVRVMRSTHCPILLYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US21</accession>
    <name>A0A0M2US21_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Hydroxylamine oxidoreductase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">hao_6</name>
        <name evidence="2" type="ORF">BROFUL_02419</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000231">
        <property type="protein sequence ID" value="KKO18873.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18873">
        <property type="protein sequence ID" value="KKO18873"/>
        <property type="gene ID" value="BROFUL_02419"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3008"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023155">
        <property type="entry name" value="Cyt_c-552/4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036280">
        <property type="entry name" value="Multihaem_cyt_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13435">
        <property type="entry name" value="Cytochrome_C554"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48695">
        <property type="entry name" value="SSF48695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cytochrome_C554" evidence="1">
        <location>
            <begin position="100"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome_C554" evidence="1">
        <location>
            <begin position="186"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18873.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="558" mass="62233" checksum="8C2205F464575CED" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US37</accession>
    <name>A0A0M2US37_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADPH-dependent FMN reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02603</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18652">
        <property type="protein sequence ID" value="KKO18652"/>
        <property type="gene ID" value="BROFUL_02603"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005025">
        <property type="entry name" value="FMN_Rdtase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03358">
        <property type="entry name" value="FMN_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FMN_red" evidence="1">
        <location>
            <begin position="3"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="192" mass="21106" checksum="247BF3FE891FE7A2" modified="2015-11-11" version="1">MKKIVAIFGSPRADGNSDILLNHAIQGAVSDGVEVQKIVVRDLHIAPCNSCGGCFEKGVCVIRDDMQQLYSFFVEADGIIIASPIYFMGVSAQLKALIDRCQAFWARKYILHLPVREGARTANGFFIATAARSSGEELFTGAIKTMKAFFHVLDTKYVGDLLCCGLEEKGMVSTKRHLLEKAFDAGKQLLIW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USD8</accession>
    <name>A0A0M2USD8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Deoxyribonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02757</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000258">
        <property type="protein sequence ID" value="KKO18550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18550">
        <property type="protein sequence ID" value="KKO18550"/>
        <property type="gene ID" value="BROFUL_02757"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3411"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006935">
        <property type="entry name" value="Helicase/UvrB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04851">
        <property type="entry name" value="ResIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="1">
        <location>
            <begin position="181"/>
            <end position="341"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="454" mass="52482" checksum="6140309B33CDD396" modified="2015-11-11" version="1">MSNKKDLSERDICTQFILPALVKSGWDVEKQVREEVFFTDGRIFVKGKKTVRGKRKRADFILYLKPNIPLAVIEAKDNNHSVGAGLQQALEYAEMLDVPVAFSSNGDGFVQHDRSGFSAQIETELSLDAFPSSAELWKLYKKYKRIETPEQEEIASFNYFFDGSGRAPRYYQQRAINRTVEAVARGQNRILLVMATGTGKTYTAFQIIYRLWKNGRKKRILFLADRNVLIDQTRRNDFKHFKDRMTVIKKKKIDKAFEIYLALYQGLTNYNEDKDAYKEFSRDFFDLVVVDECHRGSAAADSAWRAILDYFRSATHIGLTATPRETREISNIAYFGEPVYTYTLRQGIEDGFLAPYKVIRVGFNVDLEGWRPEAGKTDKDGIEVDDRIYNTRDFDKNLVIDERTKLVAKKVSEYLRKTNRYDKTIVFCVDIEHAERMRQAIANENPDLALENGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USK7</accession>
    <name>A0A0M2USK7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Putative undecaprenyl-phosphate galactose phosphotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_02229</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial sugar transferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19048">
        <property type="protein sequence ID" value="KKO19048"/>
        <property type="gene ID" value="BROFUL_02229"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2784"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003362">
        <property type="entry name" value="Bact_transf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017475">
        <property type="entry name" value="EPS_sugar_tfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02397">
        <property type="entry name" value="Bac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03025">
        <property type="entry name" value="EPS_sugtrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 9" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="46"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="77"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="111"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="280"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="domain" description="Bac_transf" evidence="8">
        <location>
            <begin position="275"/>
            <end position="463"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02397"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="469" mass="54380" checksum="259C597AA6EA0B12" modified="2015-11-11" version="1">MLKEHHVAFKWLMIFVDLVIVMVTFFAGFFLRNKFDVSYEDISTCVMVLPTVLVIWGVLLHYFGMYDSFRTRPVVDILLIVAETAFVGVGLFGSFVFVVKIESLGRLHTAYSFLLAAMFLSIEKVLLVLWFRYQRKKGLNTRNMLIVGTGKRTQRFLALINKHAEWGIHVVGLVDEDRDKMNSTIYGHKVIGSFSDMPDIIKKNVVDEVLFIVPRSWLDKIEELMYQCEIEGLRVRLALDFFDLKLSKAKYTYIENFPILTFESAPDQTIFLLLKRLLDIIFSGMALIVLSPVFVVTALLIKITSKGEVFFKQQRCSLYGRRFLVYKFRTMVEDAEAKLKDLLAYNEMDGPVFKMENDPRVTKIGKILRKFSIDELPQLLNVFKGDMSLVGPRPPLPGEVDQYKPWQRRRLSMRPGMTCLWQAYGRNEITDFNEWMKLDLNYIDNWSLWLDFKILLKTIPSVLSGIGAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USM6</accession>
    <name>A0A0M2USM6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02701</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000250">
        <property type="protein sequence ID" value="KKO18600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18600">
        <property type="protein sequence ID" value="KKO18600"/>
        <property type="gene ID" value="BROFUL_02701"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3341"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2310.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007712">
        <property type="entry name" value="RelE/ParE_toxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035093">
        <property type="entry name" value="RelE/ParE_toxin_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05016">
        <property type="entry name" value="ParE_toxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143011">
        <property type="entry name" value="SSF143011"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-1277">Toxin-antitoxin system</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18600.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="84" mass="10197" checksum="5CF189F8CA42E5AB" modified="2015-11-11" version="1">MYKLIMKKSARKELDNISNPFFLKIDEAILALKNNPHPYPQSKKLKGEDKYRLRVGDFRVIYTVDEKQKIISIYRIRHRKDIYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USP9</accession>
    <name>A0A0M2USP9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Cation-transporting ATPase PacL</fullName>
            <ecNumber evidence="9">3.6.1.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">pacL</name>
        <name evidence="9" type="ORF">BROFUL_02418</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.-" evidence="9"/>
    <dbReference type="EMBL" id="LAQJ01000231">
        <property type="protein sequence ID" value="KKO18872.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18872">
        <property type="protein sequence ID" value="KKO18872"/>
        <property type="gene ID" value="BROFUL_02418"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3007"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006068">
        <property type="entry name" value="ATPase_P-typ_cation-transptr_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004014">
        <property type="entry name" value="ATPase_P-typ_cation-transptr_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023299">
        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018303">
        <property type="entry name" value="ATPase_P-typ_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008250">
        <property type="entry name" value="ATPase_P-typ_transduc_dom_A_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001757">
        <property type="entry name" value="P_typ_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044492">
        <property type="entry name" value="P_typ_ATPase_HD_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00689">
        <property type="entry name" value="Cation_ATPase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00690">
        <property type="entry name" value="Cation_ATPase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00120">
        <property type="entry name" value="HATPASE"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00027">
        <property type="entry name" value="p-type_atpase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00831">
        <property type="entry name" value="Cation_ATPase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81653">
        <property type="entry name" value="SSF81653"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81660">
        <property type="entry name" value="SSF81660"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="SSF81665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01494">
        <property type="entry name" value="ATPase_P-type"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00154">
        <property type="entry name" value="ATPASE_E1_E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="56"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="87"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="252"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="282"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="700"/>
            <end position="720"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="732"/>
            <end position="751"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="772"/>
            <end position="796"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="825"/>
            <end position="843"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="863"/>
            <end position="882"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="894"/>
            <end position="914"/>
        </location>
    </feature>
    <feature type="domain" description="Cation_ATPase_N" evidence="8">
        <location>
            <begin position="9"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18872.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="922" mass="100596" checksum="BAE958E0AD3EB256" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USZ8</accession>
    <name>A0A0M2USZ8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03203</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000293">
        <property type="protein sequence ID" value="KKO18101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18101">
        <property type="protein sequence ID" value="KKO18101"/>
        <property type="gene ID" value="BROFUL_03203"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="233" mass="27572" checksum="56A2DB7DD7C7746E" modified="2015-11-11" version="1">MIESKKLRKEYSQNFNILELIKYFFPWWISQNGEKSALSDKRPWIVFTAIKYLDAILTKDMMVFEYGSGGSTLFFAERVKTVISVEHDKSWWKVVSDKVNVLGHGNSHLWLIEPTISDKSQYENIADIDSYKSEDKNYRGQSFEKYVKKIDEYPDEYFDLVMVDGRARPSCFKHAVSKVRLGGYFVLDNAEREYYFNIHENLNNTNWEKIDFYGPGPYCSYFWRTSIWLKVGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT22</accession>
    <name>A0A0M2UT22_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">zf-RING_7 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03175</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18126.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18126">
        <property type="protein sequence ID" value="KKO18126"/>
        <property type="gene ID" value="BROFUL_03175"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003743">
        <property type="entry name" value="Zf-RING_7"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02591">
        <property type="entry name" value="zf-RING_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="zf-RING_7" evidence="2">
        <location>
            <begin position="198"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="32"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="118"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02591"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18126.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="245" mass="28351" checksum="59908A8D91FC89DE" modified="2015-11-11" version="1">MSERIEVLRRLQSIDTKLRRSEDDKLYRGHDVQKKLALIQQKKTELLKLNDEIKNYQKDVGIKELDLKSAEAEIAKLRLQMNQVKTNKEYSAIKTEIGGKEANKSVLEEEIIGMMTKCEEMNQRYRVFEKTIEQENSQFKELQKQVEADMKTIDAEMHELTTMRNKYATLLDSDALQHYNRLVSHKDAVAIVPVVNRVCQGCFMSVTAQTLNQLLSGKDLTFCNSCGRILYLNNGNEVLTEEEEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTF3</accession>
    <name>A0A0M2UTF3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01947</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000199">
        <property type="protein sequence ID" value="KKO19348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19348">
        <property type="protein sequence ID" value="KKO19348"/>
        <property type="gene ID" value="BROFUL_01947"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="41" mass="4894" checksum="76200C4C6B989B8D" modified="2015-11-11" version="1">MQQSIAIGLDVIAVEFFLHFLRDEKFFKKSFCFNEHKVQAM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTI2</accession>
    <name>A0A0M2UTI2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5 7">50S ribosomal protein L15</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rplO</name>
        <name evidence="10" type="ORF">BROFUL_01905</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Binds to the 23S rRNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the universal ribosomal protein uL15 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19378.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19378">
        <property type="protein sequence ID" value="KKO19378"/>
        <property type="gene ID" value="BROFUL_01905"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2374"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01341">
        <property type="entry name" value="Ribosomal_L15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036227">
        <property type="entry name" value="L18e/L15P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030878">
        <property type="entry name" value="Ribosomal_L15"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005749">
        <property type="entry name" value="Ribosomal_L15_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001196">
        <property type="entry name" value="Ribosomal_L15_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021131">
        <property type="entry name" value="Ribosomal_L18e/L15P"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12934">
        <property type="entry name" value="PTHR12934"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00828">
        <property type="entry name" value="Ribosomal_L27A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52080">
        <property type="entry name" value="SSF52080"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01071">
        <property type="entry name" value="rplO_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00475">
        <property type="entry name" value="RIBOSOMAL_L15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_L18e/L15P" evidence="9">
        <location>
            <begin position="2"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00029547"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01341"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003888"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00828"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19378.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="121" mass="13059" checksum="79732787105CE9AA" modified="2015-11-11" version="1">MGKTSCRGGKGATARSGNETKIQFEGGQTPLFRRLPKRGFNNPFKKKYVTVNVKDIASFDKGTVIDAERLMNAGIIKKVLDGIKILGDGEIKNALTVVAHKFSKVAQEKIQAAGGEVKVIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTN4</accession>
    <name>A0A0M2UTN4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02113</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000212">
        <property type="protein sequence ID" value="KKO19172.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19172">
        <property type="protein sequence ID" value="KKO19172"/>
        <property type="gene ID" value="BROFUL_02113"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19172.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="109" mass="12450" checksum="A4E21347F4ADA357" modified="2015-11-11" version="1" fragment="single">KTVPPEKGFVKNLQKKKFLYSNTITQHNLNQVPSAGRTGVLDCLYDVNRGRLTCLRGFKGGVKLAKKERFYTVILYNLQRNWKILDVEDNNVIIPKFVTPIDRGKVCPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTQ1</accession>
    <name>A0A0M2UTQ1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyltransferase fused to TPR-repeat domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">waaE_4</name>
        <name evidence="3" type="ORF">BROFUL_01827</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000190">
        <property type="protein sequence ID" value="KKO19448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19448">
        <property type="protein sequence ID" value="KKO19448"/>
        <property type="gene ID" value="BROFUL_01827"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="5"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="200"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="319"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="353"/>
            <end position="386"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="401" mass="45612" checksum="D81987EBC7C08C68" modified="2015-11-11" version="1">MIQLSACLIVKNEAFLLPYCLDSIGAFVDEIIVVDTGSTDETIKIANKYKAKVSQFPWTEDFSAARNHSISCARGEWILYIDADEAIDRVNAGKIHDAIKRKDIMGITVRQCIPQRINNIATAYYSEYCRIFRRHKDVRFKGKIHEQILPSIERLGGKVLRTDIVFNHWAYGINEEKKRRRAERNLRYLLDEVENAPYDPFVYFNLGITYCELGKKDAAICSLQRTIDLYTGNIKRELIGQAHLWLAKLYLELDNFTKTEYHARMVSSYDPANPLSAYILATIAVVKEQYKTAIEHLEHAIQISKGETGLLPSVEMDLAQMYLELGSCRSASGDTLDAEKDFVRSLEYNPSGALPYVLLGNCRFLDGDKKEAEKMYERALAIDSSLVNASHGIELCRANKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTV1</accession>
    <name>A0A0M2UTV1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Amino_oxidase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02922</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18416.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18416">
        <property type="protein sequence ID" value="KKO18416"/>
        <property type="gene ID" value="BROFUL_02922"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002937">
        <property type="entry name" value="Amino_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01593">
        <property type="entry name" value="Amino_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amino_oxidase" evidence="1">
        <location>
            <begin position="15"/>
            <end position="449"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18416.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="479" mass="54601" checksum="83BC8602EDC0D0E3" modified="2015-11-11" version="1">MTKMRNIVVLGGGPCGLSAAWELSENGYDVTVLEKDSGVGGLCITHEYQGYRFDLGGHRFVSPNKGFVDRVCRMMGDELLTAERKSVILLNGKTFQYPLSARDLFAKIGFRTGIMAFFSFMKEAVIAVFLRKKEVSFYDWVTHRFGRILYDLFFGPYTEKVWGISPKLISSDWASQRIALLNLSDVCLRLSGLKEDTPRTYARTYFYPRKGIGQIFEVMAKVVRQNGGRIVTHADVSGVEVCGGTVKKIRYMHHGFLREIDCDGVISTMPLPDLIHALPEHLVRDILPDARGLRYRAIRFMNMLVGRSDISDNTWMYVAEKKYVMTRIQEPRRRSPFNAPDGKTSLMLEMPCDVNDDLWNYGDEELLARCLTDLCELGINVRDDVTGYFTSRVTHGYPVYSLDYRSHQGRLLNFLDQFDNLITCGRQGAFRYIFMDTAMEMGIAAARHIVSERHYEKGQIQDMRSGAGLLEKDFISVSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTV9</accession>
    <name>A0A0M2UTV9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two-component sensor kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_03402</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000311">
        <property type="protein sequence ID" value="KKO17914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17914">
        <property type="protein sequence ID" value="KKO17914"/>
        <property type="gene ID" value="BROFUL_03402"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="1 2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="5"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="143"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="3">
        <location>
            <begin position="406"/>
            <end position="620"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO17914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="626" mass="69484" checksum="9EEF7CFA9FECB352" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTX5</accession>
    <name>A0A0M2UTX5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Agmatinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02875</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the arginase family. Agmatinase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000270">
        <property type="protein sequence ID" value="KKO18441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18441">
        <property type="protein sequence ID" value="KKO18441"/>
        <property type="gene ID" value="BROFUL_02875"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3559"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016813">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901564">
        <property type="term" value="P:organonitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005925">
        <property type="entry name" value="Agmatinase-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006035">
        <property type="entry name" value="Ureohydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023696">
        <property type="entry name" value="Ureohydrolase_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11358">
        <property type="entry name" value="PTHR11358"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00491">
        <property type="entry name" value="Arginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036979">
        <property type="entry name" value="Arginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52768">
        <property type="entry name" value="SSF52768"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01230">
        <property type="entry name" value="agmatinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51409">
        <property type="entry name" value="ARGINASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="308" mass="34765" checksum="431BEFFB19395305" modified="2015-11-11" version="1">MLRFIKEHTLNSLQFGAFPSDYQDDDEAYESSRVVILGVPFDGTATYQSGTKLGPNAILNASVNVEPYDEELEEIYPIGIFTIGTLNIEEIHTDVKKVVDTLYRVSKGIVKDNKFLVTLGGEHSISQGIIRAYKEKYRKLSVLQLDAHLDLMDQFGGTQFSHASVSRRVVDDLKCKVTSFGVRVVSKEELSFARKRKDAISVFYAKDIHDNDDWHDQALETLEDHVYITLDVDGFDTSIMPATGTPVPGGLSWYRTIDFLRKVYKNKKVVGFDVVELKPNPGNEAPNFLAVNLVYKNIGFYKKYTLCL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTZ6</accession>
    <name>A0A0M2UTZ6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Selenocysteine-specific translation elongation factor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01760</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000182">
        <property type="protein sequence ID" value="KKO19533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19533">
        <property type="protein sequence ID" value="KKO19533"/>
        <property type="gene ID" value="BROFUL_01760"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2182"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001514">
        <property type="term" value="P:selenocysteine incorporation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015190">
        <property type="entry name" value="Elong_fac_SelB-wing-hlx_typ-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015191">
        <property type="entry name" value="Elong_fac_SelB-wing-hlx_typ-3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009001">
        <property type="entry name" value="Transl_elong_EF1A/Init_IF2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004535">
        <property type="entry name" value="Transl_elong_SelB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09106">
        <property type="entry name" value="SelB-wing_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09107">
        <property type="entry name" value="SelB-wing_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50465">
        <property type="entry name" value="SSF50465"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00475">
        <property type="entry name" value="selB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="2" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="3">
        <location>
            <begin position="15"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="677" mass="74625" checksum="6D93234079883CB4" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU35</accession>
    <name>A0A0M2UU35_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01952</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000200">
        <property type="protein sequence ID" value="KKO19337.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19337">
        <property type="protein sequence ID" value="KKO19337"/>
        <property type="gene ID" value="BROFUL_01952"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19337.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="165" mass="18464" checksum="CF9C8B625F23E817" modified="2015-11-11" version="1">MKPTLITGISGVGKTSVVGELWCRGFQCIDMDEPGWSSMDAEGHLHWNMDCLEQAMTEAGTNRLFVSGCAEEQADLYDRFGSIILLSAPRDIMTERIRSRSNNAFGQTPAEMARILTDLEQIEPLLRERYTHEIKTTVPVKDVVDRILGLNCPTSSCTRRRASRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU88</accession>
    <name>A0A0M2UU88_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4">Elongation factor Tu</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_02740</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000255">
        <property type="protein sequence ID" value="KKO18561.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18561">
        <property type="protein sequence ID" value="KKO18561"/>
        <property type="gene ID" value="BROFUL_02740"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3388"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01884">
        <property type="entry name" value="EF_Tu"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03697">
        <property type="entry name" value="EFTU_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041709">
        <property type="entry name" value="EF-Tu_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004161">
        <property type="entry name" value="EFTu-like_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033720">
        <property type="entry name" value="EFTU_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031157">
        <property type="entry name" value="G_TR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004541">
        <property type="entry name" value="Transl_elong_EFTu/EF1A_bac/org"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03144">
        <property type="entry name" value="GTP_EFTU_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00485">
        <property type="entry name" value="EF-Tu"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00301">
        <property type="entry name" value="G_TR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 6" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="2" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1 6" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="5">
        <location>
            <begin position="10"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00029554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU004061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18561.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="343" mass="37579" checksum="39E8EF9C6D0D1999" modified="2015-11-11" version="1">MGKEVFKRTKPHVNVGTIGHVDHGKTTLTAVITHVLAKQGLAKERPYDSIDKAPEERERGITIAISHVEYETQKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAPDGPMPQTREHILLARQVGVPRIVVFMNKVDMLEDKELLDLVEMEVRELLSKYNFPGDEIPVVRGSALKANECGCGSATCANCGPILKLMEAVDAYIPDPVREIDKPFLMSVEDVFSIKGRGTVGTGRVERGRVKVGEEVDIVGIKPDVKKSVVTGVEMFNKTLDEGQAGDNLGVLLRGVEKEDLERGQVLAKPGSITPHKKYEAEAYILTKEEGGSIRRSLMGIGRSFTSGRRM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU93</accession>
    <name>A0A0M2UU93_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative RNA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02734</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000254">
        <property type="protein sequence ID" value="KKO18566.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18566">
        <property type="protein sequence ID" value="KKO18566"/>
        <property type="gene ID" value="BROFUL_02734"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019300">
        <property type="entry name" value="CooT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10133">
        <property type="entry name" value="CooT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18566.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="72" mass="8053" checksum="4B83E4FD0E54D757" modified="2015-11-11" version="1">MCQASVYLNDEKIMEDVIWVKPVAGGIQIRTFFEEPVVVKGAISGVDLLKHRILLVSAEENQLCARQEGNRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUD2</accession>
    <name>A0A0M2UUD2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Lipoprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01631</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the MlaA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000170">
        <property type="protein sequence ID" value="KKO19653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19653">
        <property type="protein sequence ID" value="KKO19653"/>
        <property type="gene ID" value="BROFUL_01631"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2012"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007428">
        <property type="entry name" value="MlaA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30035">
        <property type="entry name" value="PTHR30035"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04333">
        <property type="entry name" value="MlaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01805">
        <property type="entry name" value="VACJLIPOPROT"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644020" evidence="4">
        <location>
            <begin position="25"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="33"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="37"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="277" mass="30949" checksum="447AEC5049E69F90" modified="2015-11-11" version="1">MRNGVTGMFFFGLTVLFSMHALQAESVPVSAPAESSYGELNEDNASNMDTGSGGAEGESDEAGQAGTEAEIPLVKDTFQPFNRAMFAFNDKAFHYFFKPIYTGYNSMIPVQARVSVKNFYTNIRMPIRFFNCLFQSNFKGAGTEMLRFVVNSTVGVAGFLDPAKSKFHLEKQERDFGQTLGKYNMQSGTYFVWPFLGPSNTRDTIGFVGDTVLDPLTWVSYFFLKPIESIGNYTYESVNKLSVDTGDTYESVTKPAIDPYIALQDAYLQNRVKKIKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUG8</accession>
    <name>A0A0M2UUG8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glyco_trans_2-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03216</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000293">
        <property type="protein sequence ID" value="KKO18114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18114">
        <property type="protein sequence ID" value="KKO18114"/>
        <property type="gene ID" value="BROFUL_03216"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3962"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="23"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="273" mass="32011" checksum="FDA2E5BEBFE95DF0" modified="2015-11-11" version="1">MEDGIYIHQKTRKISEPKEPQISVITVVYNGKKHLEQTILSVLNQRYNKIEYIIIDGNSTDGTLDIIKKYEDQIDYWLSEPDNGIYDAMNKGIDLAKGEWINFMNAGDKFYESNTIEKVFKECDLHADFIYGHHQINYDQNFSKIQKALPIQNLWKGMVFCHQSLFVKASLMKRYKFNRKNTMNADYEFIYSAYINNFRFYNTGIVVSSILAGGLSDSGCLRRVKDHWSIARTYSKSIKIDIYYMLLLTDTFLKKILKDILPKKFVNSMRSKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUL4</accession>
    <name>A0A0M2UUL4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02632</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the HicA mRNA interferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18681">
        <property type="protein sequence ID" value="KKO18681"/>
        <property type="gene ID" value="BROFUL_02632"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.920.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012933">
        <property type="entry name" value="HicA_mRNA_interferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038570">
        <property type="entry name" value="HicA_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07927">
        <property type="entry name" value="HicA_toxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-1277">Toxin-antitoxin system</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006620"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="72" mass="8386" checksum="C0F3CDE624C7AF57" modified="2015-11-11" version="1">MEKLKPVTWQEFVSRMKELGFEGPFFGGKHPKMKKGTQTVIIPNKHESEIGIGFLTRLLRQAEITKDEWLNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUM7</accession>
    <name>A0A0M2UUM7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01985</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19325.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19325">
        <property type="protein sequence ID" value="KKO19325"/>
        <property type="gene ID" value="BROFUL_01985"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19325.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="188" mass="21753" checksum="6D7954310BAF8FEC" modified="2015-11-11" version="1">MPMDKEFIKSKIHSKEDIALKTLTDIIAYKIYESLEDKGPEANFLAAAEAVAQYVSEQFKDFDSFKGHVSQLGKEMKTINQFADTVYNYYQDKQLLSFDIVKNMISSVKDFNLKVITDIVAYKIYQSPEDKDPELNFISAETFVAQYVSENFKNIREFRRCLSDLGKGPYALEAFADLVYRYYCQKKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUP0</accession>
    <name>A0A0M2UUP0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribonuclease H</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01759</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000182">
        <property type="protein sequence ID" value="KKO19532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19532">
        <property type="protein sequence ID" value="KKO19532"/>
        <property type="gene ID" value="BROFUL_01759"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50879">
        <property type="entry name" value="RNASE_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="66"/>
            <end position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="200" mass="22473" checksum="2E749B88A7994997" modified="2015-11-11" version="1">MGNMSPQEFIMLISKYLDAEKLIRENPAVTREMINAFFREICQTEERGQDDSCSAPEELPRRGQKDFCKLIIHTDGASRGNPGKAGIGVAIFDKDYHLIEEVCGFLGETTNNVAEYQAMILAARKAVACHAKEVIFRTDSELLVRQLHGAYRVKSANILPLYQELVKLLDKIPAWKIQHVRREDNVIADALANQGIDSRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUR9</accession>
    <name>A0A0M2UUR9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HDOD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02568</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000238">
        <property type="protein sequence ID" value="KKO18736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18736">
        <property type="protein sequence ID" value="KKO18736"/>
        <property type="gene ID" value="BROFUL_02568"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006675">
        <property type="entry name" value="HDIG_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013976">
        <property type="entry name" value="HDOD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08668">
        <property type="entry name" value="HDOD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00277">
        <property type="entry name" value="HDIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51833">
        <property type="entry name" value="HDOD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HDOD" evidence="1">
        <location>
            <begin position="16"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="297" mass="33413" checksum="93B5B85C34955EBD" modified="2015-11-11" version="1">MSFDKISVLISRISSLPALPTVACRVIEITADPNSSANDLTEVIVSDISLTTKLLKMANSPFFGAIRRVATLQHAITVLGFKEVRNLVISAVVFESFTKIEKNGNYDIGKFWKHSFMCGLAAKIIATDLKKESNEFFVAGLIHDIGKLVIYLTLPNEFIKLIETTGHLKWKFRAFEAEKEIIGMAHDEVGMKLLKKWMFPENLLTAIGFHHRLQETDQKTLLPAIVHIADILVHIYEMQPVVEDDVSLEIASLYADIIKLVQAYGIKWDASVLHRLQQVLAESIEKEAGTFRLFFGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUX9</accession>
    <name>A0A0M2UUX9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01862</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000192">
        <property type="protein sequence ID" value="KKO19430.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19430">
        <property type="protein sequence ID" value="KKO19430"/>
        <property type="gene ID" value="BROFUL_01862"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2318"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003718">
        <property type="entry name" value="OsmC/Ohr_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036102">
        <property type="entry name" value="OsmC/Ohrsf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02566">
        <property type="entry name" value="OsmC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82784">
        <property type="entry name" value="SSF82784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19430.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="200" mass="22537" checksum="093DA098D0A6FEA6" modified="2015-11-11" version="1">MIHLYDIGYKERRRDMAQEKKVNGVDVEQLFSTIEGIKKKPEIAKFKFRATNKWVDGTHNRATIKDFYGAGKEDNSREPLVFELDEPPVLLGKNEGANPVEYLLVALSGCLTTSLIAHASAKGIKVRAVESRLEGDLDLRGFLGISEDVKVGFEKIRVYFKIDADISAQQKEDLIRMAQKYSPVYNSIANPVPVIVQHEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV39</accession>
    <name>A0A0M2UV39_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Carbon monoxide dehydrogenase</fullName>
            <ecNumber evidence="6">1.2.7.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_02449</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>CO + H2O + 2 oxidized [2Fe-2S]-[ferredoxin] = CO2 + 2 H(+) + 2 reduced [2Fe-2S]-[ferredoxin]</text>
            <dbReference type="Rhea" id="RHEA:21040"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:17245"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="EC" id="1.2.7.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.2.7.4" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000232">
        <property type="protein sequence ID" value="KKO18856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18856">
        <property type="protein sequence ID" value="KKO18856"/>
        <property type="gene ID" value="BROFUL_02449"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3044"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018492">
        <property type="term" value="F:carbon-monoxide dehydrogenase (acceptor) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043885">
        <property type="term" value="F:carbon-monoxide dehydrogenase (ferredoxin) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016151">
        <property type="term" value="F:nickel cation binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006091">
        <property type="term" value="P:generation of precursor metabolites and energy"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1270.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2030">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016101">
        <property type="entry name" value="CO_DH_a-bundle"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010047">
        <property type="entry name" value="CODH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004137">
        <property type="entry name" value="HCP/CODH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016099">
        <property type="entry name" value="Prismane-like_a/b-sand"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011254">
        <property type="entry name" value="Prismane-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30109">
        <property type="entry name" value="PTHR30109"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03063">
        <property type="entry name" value="Prismane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005023">
        <property type="entry name" value="CODH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56821">
        <property type="entry name" value="SSF56821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01702">
        <property type="entry name" value="CO_DH_cata"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6 7" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="4 6 7" id="KW-0408">Iron</keyword>
    <keyword evidence="5 6 7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3 6 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0533">Nickel</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="7">
        <location>
            <position position="35"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="43"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="44"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="47"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="52"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="66"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="257"/>
        </location>
        <ligand>
            <name>[Ni-4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:47739"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="293"/>
        </location>
        <ligand>
            <name>[Ni-4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:47739"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="331"/>
        </location>
        <ligand>
            <name>[Ni-4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:47739"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="444"/>
        </location>
        <ligand>
            <name>[Ni-4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:47739"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="475"/>
        </location>
        <ligand>
            <name>[Ni-4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:47739"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="516"/>
        </location>
        <ligand>
            <name>[Ni-4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:47739"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR005023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR005023-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="653" mass="70936" checksum="25EB4D34764ED30F" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV60</accession>
    <name>A0A0M2UV60_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Methionine adenosyltransferase</fullName>
            <ecNumber evidence="6">2.5.1.6</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">BROFUL_01814</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O + L-methionine = diphosphate + phosphate + S-adenosyl-L-methionine</text>
            <dbReference type="Rhea" id="RHEA:21080"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="EC" id="2.5.1.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4">Amino-acid biosynthesis; S-adenosyl-L-methionine biosynthesis; S-adenosyl-L-methionine from L-methionine: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the AdoMet synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.6" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000189">
        <property type="protein sequence ID" value="KKO19475.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19475">
        <property type="protein sequence ID" value="KKO19475"/>
        <property type="gene ID" value="BROFUL_01814"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2255"/>
    <dbReference type="UniPathway" id="UPA00315">
        <property type="reaction ID" value="UER00080"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004478">
        <property type="term" value="F:methionine adenosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006730">
        <property type="term" value="P:one-carbon metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006556">
        <property type="term" value="P:S-adenosylmethionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022631">
        <property type="entry name" value="ADOMET_SYNTHASE_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022630">
        <property type="entry name" value="S-AdoMet_synt_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002133">
        <property type="entry name" value="S-AdoMet_synthetase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022636">
        <property type="entry name" value="S-AdoMet_synthetase_sfam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11964">
        <property type="entry name" value="PTHR11964"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02773">
        <property type="entry name" value="S-AdoMet_synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55973">
        <property type="entry name" value="SSF55973"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00377">
        <property type="entry name" value="ADOMET_SYNTHASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="12" id="KW-0460">Magnesium</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="13" id="KW-0630">Potassium</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="S-AdoMet_synt_C" evidence="14">
        <location>
            <begin position="1"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00009685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012828"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF02773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KKO19475.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="153" mass="16470" checksum="5BAA9F8D4029C680" modified="2015-11-11" version="1">MGGPQGDCGLTGRKIIVDTYGGWGRHGGGAFSGKDPTKVDRSACYAARHIAKNVVASGLADRCEAQVAYAIGVAKPLAVHITTEGTGKVPDEKLTQICEKVFDMTPKGIIDRLKLRRPIYKITARHGHFGRSEDSFTWEKTDMVDALRKAAGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV63</accession>
    <name>A0A0M2UV63_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01590</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000168">
        <property type="protein sequence ID" value="KKO19702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19702">
        <property type="protein sequence ID" value="KKO19702"/>
        <property type="gene ID" value="BROFUL_01590"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="50"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="177" mass="20694" checksum="A19AA19A0D210F4B" modified="2015-11-11" version="1">MVDQTTKGLSVNAKTLIVILLFVNVGFATKMLNKYYRMKEAGYVREKTFHQQLENRVMKAFGSMEELNKMISDITRQKEEAEKLTASFKEHDEQLKLANEKLEDIKAMLEEEKARLQKEIWGLEDSLSLARKTLNSKDLSIQELLKNIETTKKENVTLRKQLEEPLKAPEEWRLPHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV96</accession>
    <name>A0A0M2UV96_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Hydroxylamine oxidoreductase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01550</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000161">
        <property type="protein sequence ID" value="KKO19737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19737">
        <property type="protein sequence ID" value="KKO19737"/>
        <property type="gene ID" value="BROFUL_01550"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="119" mass="13592" checksum="0777D826AF9B87EB" modified="2015-11-11" version="1">MMTKEAKAVEIITHWVPHEVYGQIGEPDNNGKVFFSGLGAKYMGYPKDSGAPPYPGKYSKFWKTLPAYRYYIPDYMYNRDEVRPSNPIKGTFQLEQCIACHSVMTPGIVRIIRRARTPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVF6</accession>
    <name>A0A0M2UVF6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative phage transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01480</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000151">
        <property type="protein sequence ID" value="KKO19812.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19812">
        <property type="protein sequence ID" value="KKO19812"/>
        <property type="gene ID" value="BROFUL_01480"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041657">
        <property type="entry name" value="HTH_17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010093">
        <property type="entry name" value="SinI_DNA-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12728">
        <property type="entry name" value="HTH_17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01764">
        <property type="entry name" value="excise"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH_17" evidence="1">
        <location>
            <begin position="13"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19812.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="67" mass="7724" checksum="18C3F4EE1200F526" modified="2015-11-11" version="1">MTELKVVEDGGGLMTMQEASDYLKIKVSTLYDMCMRKKVPVVKIGRLNRFKLSDLEAFINRNRQEAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVG6</accession>
    <name>A0A0M2UVG6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">60 kDa outer membrane protein</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Cysteine-rich outer membrane protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_02818</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="1">Part of a disulfide cross-linked outer membrane complex (COMC) composed of the major outer membrane porin (MOMP), the small cysteine-rich protein (OmcA) and the large cysteine-rich periplasmic protein (OmcB).</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000265">
        <property type="protein sequence ID" value="KKO18494.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18494">
        <property type="protein sequence ID" value="KKO18494"/>
        <property type="gene ID" value="BROFUL_02818"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005201">
        <property type="term" value="F:extracellular matrix structural constituent"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003506">
        <property type="entry name" value="Chlam_OMP6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001434">
        <property type="entry name" value="DUF11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01345">
        <property type="entry name" value="DUF11"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01336">
        <property type="entry name" value="CHLAMIDIAOM6"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01451">
        <property type="entry name" value="B_ant_repeat"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF11" evidence="5">
        <location>
            <begin position="194"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="domain" description="DUF11" evidence="5">
        <location>
            <begin position="303"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="domain" description="DUF11" evidence="5">
        <location>
            <begin position="425"/>
            <end position="505"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="35"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="37"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00030804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00033131"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18494.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="530" mass="57397" checksum="C881DC4DE652A581" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVG7</accession>
    <name>A0A0M2UVG7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01465</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000150">
        <property type="protein sequence ID" value="KKO19822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19822">
        <property type="protein sequence ID" value="KKO19822"/>
        <property type="gene ID" value="BROFUL_01465"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="120" mass="13204" checksum="EDA506C40317D3FF" modified="2015-11-11" version="1">MCCMPLKNNYIKLSKKFGGTHVLISKGLKRSIIDSIMRGSDISVSNTYEVAKILGVSVERLLADEDRYLVLPEQKINEEEGYSVPLVAGYISGGMGSIPIEHIIEKTLDTEEISSITGWA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVI2</accession>
    <name>A0A0M2UVI2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">ATP synthase subunit beta</fullName>
            <ecNumber evidence="10">7.1.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">ATP synthase F1 sector subunit beta</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">F-ATPase subunit beta</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10 12" type="primary">atpD</name>
        <name evidence="12" type="ORF">BROFUL_01692</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>ATP + 4 H(+)(in) + H2O = ADP + 5 H(+)(out) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:57720"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="7.1.2.2"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell membrane</location>
            <topology evidence="10">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 10">Belongs to the ATPase alpha/beta chains family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.1.2.2" evidence="10"/>
    <dbReference type="EMBL" id="LAQJ01000176">
        <property type="protein sequence ID" value="KKO19585.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19585">
        <property type="protein sequence ID" value="KKO19585"/>
        <property type="gene ID" value="BROFUL_01692"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2097"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045261">
        <property type="term" value="C:proton-transporting ATP synthase complex, catalytic core F(1)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046961">
        <property type="term" value="F:proton-transporting ATPase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1140.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01347">
        <property type="entry name" value="ATP_synth_beta_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005722">
        <property type="entry name" value="ATP_synth_F1_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020003">
        <property type="entry name" value="ATPase_a/bsu_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004100">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036121">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000194">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_nucl-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024034">
        <property type="entry name" value="ATPase_F1/V1_b/a_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00006">
        <property type="entry name" value="ATP-synt_ab"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02874">
        <property type="entry name" value="ATP-synt_ab_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50615">
        <property type="entry name" value="SSF50615"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01039">
        <property type="entry name" value="atpD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00152">
        <property type="entry name" value="ATPASE_ALPHA_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 10" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="4 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 10" id="KW-0139">CF(1)</keyword>
    <keyword evidence="10" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="12" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6 10" id="KW-0406">Ion transport</keyword>
    <keyword evidence="7 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 10" id="KW-1278">Translocase</keyword>
    <keyword evidence="2 10" id="KW-0813">Transport</keyword>
    <feature type="domain" description="AAA" evidence="11">
        <location>
            <begin position="166"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="174"/>
            <end position="181"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO19585.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="479" mass="52869" checksum="4231441B6FCDC773" modified="2015-11-11" version="1">MYDTATIHLDRKTFENQRSYVTIAFMKGVIIAIHGDVIEIEFSEGLPNINDSLVVKKTDETNIILEVHDHISSTSVKAIALGFTQGLKRGMTVVSSGSSLKIPAGKNCLGRAFNVFGEPIDGKPPLENSHLIPIHKASPVLEEQIPASGILETGIKIIDLLSPFPRGGKIGLFGGAGVGKTVLLMEFIYKIAKVYSGTSIFCGVGERMREGHELWREMERQDIIGNAILVFGQMCESPGIRFRTPLTAIALAEFFRDEMGSDILFLMDNIYRFVQAGNEVSVLLGRLSSRVGYQPTLLSEIAEVEERIVSTQKGSITSVQAIYVPADDITDPAVANVFPHLDTTVVLSREIASKGLYPAIDPLLSTSKFLSPEDAGERHYEISRKAKEHLSRYKELLDIIAMLGIEELSPADRLIVKRARRLEMFLTQPFFLTEEFTGRKGKHVPLSKTLDGCEMILSGKMDDTSENAFFMIGDMGEIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVP5</accession>
    <name>A0A0M2UVP5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01160</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000125">
        <property type="protein sequence ID" value="KKO20118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20118">
        <property type="protein sequence ID" value="KKO20118"/>
        <property type="gene ID" value="BROFUL_01160"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1434"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003346">
        <property type="entry name" value="Transposase_20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002525">
        <property type="entry name" value="Transposase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01548">
        <property type="entry name" value="DEDD_Tnp_IS110"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02371">
        <property type="entry name" value="Transposase_20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DEDD_Tnp_IS110" evidence="1">
        <location>
            <begin position="4"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01548"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="286" mass="33312" checksum="C381409D4AA328A7" modified="2015-11-11" version="1">MVESTYNWYWLVDGLQAAKYKVHLANPAEMQQYSGMKYTDDTWDSYWLAHMLRLGILPEGYIYPKEIRPVRDLLRKRTMLVRHRTAHLLSLQNMVNRNTGRKVNVNDAKRLSEEKISEQLTDKHHKMAVQSDKAVIDFFHEQIDRIEKAVLKEVKLRYPYEELLTVPGIGKILGITIMLETGDINRFPTVSDYSSYCRCVSSQKISNGKKKGEGNKKNGNKYLAWAYVEAANFMRRYSEPARSWHQRKAAKTNKIVAIKALSNKVARACYFIIKDQTPFDPKKLFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVT3</accession>
    <name>A0A0M2UVT3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01612</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19680">
        <property type="protein sequence ID" value="KKO19680"/>
        <property type="gene ID" value="BROFUL_01612"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="112" mass="13376" checksum="F6EE939A3A8B5CE1" modified="2015-11-11" version="1">MTMTFNELPEFAKEFKQKIKKYKSLSDDLEEFKRVLTVEPLGNSKHFNIITKNDRCTVVKARLFCRYLKGSSLRIIYAFHCNDLRVDFIEIYFKGDKENENCERIKAYLNSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVW1</accession>
    <name>A0A0M2UVW1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Glycine--tRNA ligase alpha subunit</fullName>
            <ecNumber evidence="8">6.1.1.14</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Glycyl-tRNA synthetase alpha subunit</fullName>
            <shortName evidence="8">GlyRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">glyQ</name>
        <name evidence="9" type="ORF">BROFUL_01576</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly)</text>
            <dbReference type="Rhea" id="RHEA:16013"/>
            <dbReference type="Rhea" id="RHEA-COMP:9664"/>
            <dbReference type="Rhea" id="RHEA-COMP:9683"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78522"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.14"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="8">Tetramer of two alpha and two beta subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.14" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000165">
        <property type="protein sequence ID" value="KKO19715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19715">
        <property type="protein sequence ID" value="KKO19715"/>
        <property type="gene ID" value="BROFUL_01576"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1943"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004820">
        <property type="term" value="F:glycine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006426">
        <property type="term" value="P:glycyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00733">
        <property type="entry name" value="GlyRS_alpha_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00254">
        <property type="entry name" value="Gly_tRNA_synth_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006194">
        <property type="entry name" value="Gly-tRNA-synth_heterodimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002310">
        <property type="entry name" value="Gly-tRNA_ligase_asu"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02091">
        <property type="entry name" value="tRNA-synt_2e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01044">
        <property type="entry name" value="TRNASYNTHGA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00388">
        <property type="entry name" value="glyQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50861">
        <property type="entry name" value="AA_TRNA_LIGASE_II_GLYAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="5 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 8" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 8" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="299" mass="35062" checksum="F5C51FF307067B48" modified="2015-11-11" version="1">MTFQEIILKLQNYWADYGCVLWQPYDMEKGAGTFNPATFLRALGPEPWKCAYVEPSRRPTDGRYGENPNRLQHYYQFQVIIKPAPDDAQDIYLNSLRFLGIDLVKHDVRFVEDDWESPTLGATGLGWEVWLDGMEVTQFTYFQQVGGFELEPITLELTYGLERIAMFIQEKESVFDLEWVKGYTYGDIHKQDEVQFSTYNFKVADTTMLFQLFDAYEKECQRLLKEDLVLPAYDYVLKCSHTFNLLDARGAIGVTQRTGYIGRVRNLARRCAESYVQLRETLHWPLLKEFKAKKYEYAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVW4</accession>
    <name>A0A0M2UVW4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative RNA polymerase alpha subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01053</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20203.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20203">
        <property type="protein sequence ID" value="KKO20203"/>
        <property type="gene ID" value="BROFUL_01053"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1317"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed 5'-3' RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011260">
        <property type="entry name" value="RNAP_asu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001440">
        <property type="entry name" value="TPR_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013105">
        <property type="entry name" value="TPR_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03118">
        <property type="entry name" value="RNA_pol_A_CTD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00515">
        <property type="entry name" value="TPR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07719">
        <property type="entry name" value="TPR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0802">TPR repeat</keyword>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="92"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="160"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="194"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="228"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="domain" description="RNA_pol_A_CTD" evidence="3">
        <location>
            <begin position="287"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="domain" description="RNA_pol_A_CTD" evidence="3">
        <location>
            <begin position="372"/>
            <end position="433"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20203.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="455" mass="51758" checksum="AE54A06824916010" modified="2015-11-11" version="1">MPTAIADVDLDKLLEAETLSRETVTHIKEQVYSSPELREELDEKIAALRGSIKKGHEGQEGKDITLLLGILTWVIGNIKEASEFLKEVKTRKIGAYYLGKCYQELGDYNQAVECFERAKKTDTEEFDICMDIAETKRLAGKNEDALKLIKSFSQSHGNNPEFHYQLGHCLDALGEYDDAFNHYEQSLRIDPNHQKSLFRMGFNYDLNGEDEKAIECYEQCIDLYPHHKNAFINLGILYEDKGNFDDAIYCFETVLDAEPNDPRALLFLKDAKASMNMYYDEEISKKQGKESEVLNIPISDFELSVRSKNCLEKMNIRTLRDLTRITEIDLLSFKNFGETSLNEIKAILSQKGLHLGQALESDHETEIFRNKNAEKKNETVKTVDELGFSTRCRNALSKAGVEAIKDLTEKTELELDQLGIKPNYIDEIRDKLSEIGLILKTAGNDTSSADESITE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVX6</accession>
    <name>A0A0M2UVX6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF45 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02159</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000214">
        <property type="protein sequence ID" value="KKO19116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19116">
        <property type="protein sequence ID" value="KKO19116"/>
        <property type="gene ID" value="BROFUL_02159"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2695"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002725">
        <property type="entry name" value="YgjP-like_metallopeptidase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01863">
        <property type="entry name" value="DUF45"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF45" evidence="1">
        <location>
            <begin position="22"/>
            <end position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="233" mass="28268" checksum="3B3556BDA3D9CEF7" modified="2015-11-11" version="1">MLQIKLSNLPIDVIQKDIKHIHLSVYPPIGRVRISAPLRMDLETIRVFALSKLNWIKKQQQKLLDQERETPREYVTQESHYYLGKRYLMKVIEHNAAPRVVLKHSAIELYIRPDISREKKRAVLDEWYRQKLKEIVPEYIAYWKEKMKLEGIEYAIKKMKTKWGTCNREAKRIWLNLELAKKPKECIEYIIVHEMVHLLERHHNERFIAYVDKYLPKWRFYKEGLNKRPLGHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW59</accession>
    <name>A0A0M2UW59_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">ZnF_CHCC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01478</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000151">
        <property type="protein sequence ID" value="KKO19810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19810">
        <property type="protein sequence ID" value="KKO19810"/>
        <property type="gene ID" value="BROFUL_01478"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003896">
        <property type="term" value="F:DNA primase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01029">
        <property type="entry name" value="TOPRIM_primases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036977">
        <property type="entry name" value="DNA_primase_Znf_CHC2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034154">
        <property type="entry name" value="TOPRIM_DnaG/twinkle"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002694">
        <property type="entry name" value="Znf_CHC2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01807">
        <property type="entry name" value="zf-CHC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00400">
        <property type="entry name" value="ZnF_CHCC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="ZnF_CHCC" evidence="5">
        <location>
            <begin position="31"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="609"/>
            <end position="695"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="631"/>
            <end position="673"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00400"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="695" mass="78333" checksum="7F5148C4D6086ADC" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW78</accession>
    <name>A0A0M2UW78_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01455</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000149">
        <property type="protein sequence ID" value="KKO19830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19830">
        <property type="protein sequence ID" value="KKO19830"/>
        <property type="gene ID" value="BROFUL_01455"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="72" mass="8538" checksum="292D752DA9460D37" modified="2015-11-11" version="1">MNALFMLENKATNIPRKSKRYIGVKFDCCHVYTRVYMNKEETAYEGRCPKCLRRIGIKIHKDGVNYRFFSAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWC0</accession>
    <name>A0A0M2UWC0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00889</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000109">
        <property type="protein sequence ID" value="KKO20368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20368">
        <property type="protein sequence ID" value="KKO20368"/>
        <property type="gene ID" value="BROFUL_00889"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="172" mass="19406" checksum="54A2990E54779ABE" modified="2015-11-11" version="1">MIKRILRQINRKGLLDTINLSCHIVSGLMGFYLNPSSKKQSKLPPQNYEKIRSDFESSGITVIPYRVNVDEFNNWLDKASFPKEYVNHYGNVFIEKALEHYVGAQLLELKEGDKLIDIAASSSPWFEISERLYGCTAYALDLAYPKGINGNKIGADATDIPLPDNFAAVFEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWC2</accession>
    <name>A0A0M2UWC2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02022</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000206">
        <property type="protein sequence ID" value="KKO19266.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19266">
        <property type="protein sequence ID" value="KKO19266"/>
        <property type="gene ID" value="BROFUL_02022"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19266.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="81" mass="9022" checksum="F0DAD8403AB71071" modified="2015-11-11" version="1">MRKGNSGELPFSFYEDSLIVMKALVFTGEVPAKNTKPTGYFQTVKQSPEKQRAKMLAQALNDSRLNLLIGADKIAVNRGEY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWD2</accession>
    <name>A0A0M2UWD2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01139</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000123">
        <property type="protein sequence ID" value="KKO20137.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20137">
        <property type="protein sequence ID" value="KKO20137"/>
        <property type="gene ID" value="BROFUL_01139"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20137.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="271" mass="31930" checksum="DDE39CF932D7FE12" modified="2015-11-11" version="1">MGRRKRNVFLLVLLCGIFFVNVWIASFRNTSETDVVRYDPTESIPLLLMGGFRGIAVDFLWARAIARHEEKKYYELLAVNNLIAKLQPNFPAVWIFQAWNMAYNIVSEWDAPQNKWKWISTGLNFAKKGAVKNPDSGDLFFELGYMYFHLFDQRFFPYASYYREQLKTELGEDNYEESLYWLRQSLVHKQKLRNTLAVERTIGHVLWRAALCFETEGDIDKALHYAESAVEEWNGYQMNHPEDVSINVEELIRIMKEKKAFLQGISKKNTW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWE3</accession>
    <name>A0A0M2UWE3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00885</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000108">
        <property type="protein sequence ID" value="KKO20388.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20388">
        <property type="protein sequence ID" value="KKO20388"/>
        <property type="gene ID" value="BROFUL_00885"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20388.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="141" mass="15027" checksum="B9627DBE1EE8C9DB" modified="2015-11-11" version="1">MGILKRYVSLSIVWCMLAIIVFSGVLTLPIPGAVYAYAEHSGTISTNQTWHASDNPHVVTGNVLVEGAGLVTLTIEPGCMVKFNPATGLSVGRYGTNTGALNAQGTEGNPIIFTSNAASPTLVYRHINNETYKCCFATRYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWS0</accession>
    <name>A0A0M2UWS0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Ferredoxin:thioredoxin reductase</fullName>
            <ecNumber evidence="5">1.8.7.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">Ferredoxin-thioredoxin reductase subunit B</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">BROFUL_01878</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalytic subunit of the ferredoxin-thioredoxin reductase (FTR), which catalyzes the two-electron reduction of thioredoxins by the electrons provided by reduced ferredoxin.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[thioredoxin]-disulfide + 2 H(+) + 2 reduced [2Fe-2S]-[ferredoxin] = [thioredoxin]-dithiol + 2 oxidized [2Fe-2S]-[ferredoxin]</text>
            <dbReference type="Rhea" id="RHEA:42336"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="EC" id="1.8.7.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="12">Heterodimer of subunit A (variable subunit) and subunit B (catalytic subunit). Heterodimeric FTR forms a complex with ferredoxin and thioredoxin.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the ferredoxin thioredoxin reductase beta subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.8.7.2" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000194">
        <property type="protein sequence ID" value="KKO19416.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19416">
        <property type="protein sequence ID" value="KKO19416"/>
        <property type="gene ID" value="BROFUL_01878"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016730">
        <property type="term" value="F:oxidoreductase activity, acting on iron-sulfur proteins as donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004209">
        <property type="entry name" value="FTR_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036644">
        <property type="entry name" value="FTR_bsu_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35113">
        <property type="entry name" value="PTHR35113"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02943">
        <property type="entry name" value="FeThRed_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57662">
        <property type="entry name" value="SSF57662"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="11" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="9" id="KW-0408">Iron</keyword>
    <keyword evidence="10" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00003945"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00026011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00030295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KKO19416.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="100" mass="11744" checksum="A6D06561D3DFBDCC" modified="2015-11-11" version="1">MNDNREQEAIQIRKMLNEYTVRSHYKLNPDDAIVDRVVKGLAMRTIKFGYAYCPCRLVSGDKEKDRKIICPCVYHAEEIKRDGECHCNLFVGDNYQKKDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWS2</accession>
    <name>A0A0M2UWS2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Riboflavin biosynthesis protein RibD</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="10">Diaminohydroxyphosphoribosylaminopyrimidine deaminase</fullName>
                <shortName evidence="10">DRAP deaminase</shortName>
                <ecNumber evidence="10">3.5.4.26</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="10">Riboflavin-specific deaminase</fullName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="10">5-amino-6-(5-phosphoribosylamino)uracil reductase</fullName>
                <ecNumber evidence="10">1.1.1.193</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="10">HTP reductase</fullName>
            </alternativeName>
        </domain>
    </protein>
    <gene>
        <name evidence="15" type="ORF">BROFUL_00996</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 10">Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)-pyrimidine + H(+) + H2O = 5-amino-6-(5-phospho-D-ribosylamino)uracil + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:21868"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:58453"/>
            <dbReference type="ChEBI" id="CHEBI:58614"/>
            <dbReference type="EC" id="3.5.4.26"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>5-amino-6-(5-phospho-D-ribitylamino)uracil + NADP(+) = 5-amino-6-(5-phospho-D-ribosylamino)uracil + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:17845"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:58421"/>
            <dbReference type="ChEBI" id="CHEBI:58453"/>
            <dbReference type="EC" id="1.1.1.193"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10 13">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="10 13">Binds 1 zinc ion.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 10">Cofactor biosynthesis; riboflavin biosynthesis; 5-amino-6-(D-ribitylamino)uracil from GTP: step 2/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 10">Cofactor biosynthesis; riboflavin biosynthesis; 5-amino-6-(D-ribitylamino)uracil from GTP: step 3/4.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 10">In the C-terminal section; belongs to the HTP reductase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 10">In the N-terminal section; belongs to the cytidine and deoxycytidylate deaminase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.26" evidence="10"/>
    <dbReference type="EC" id="1.1.1.193" evidence="10"/>
    <dbReference type="EMBL" id="LAQJ01000118">
        <property type="protein sequence ID" value="KKO20287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20287">
        <property type="protein sequence ID" value="KKO20287"/>
        <property type="gene ID" value="BROFUL_00996"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1247"/>
    <dbReference type="UniPathway" id="UPA00275">
        <property type="reaction ID" value="UER00401"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008703">
        <property type="term" value="F:5-amino-6-(5-phosphoribosylamino)uracil reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008835">
        <property type="term" value="F:diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016192">
        <property type="entry name" value="APOBEC/CMP_deaminase_Zn-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002125">
        <property type="entry name" value="CMP_dCMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016193">
        <property type="entry name" value="Cytidine_deaminase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024072">
        <property type="entry name" value="DHFR-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004794">
        <property type="entry name" value="Eubact_RibD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011549">
        <property type="entry name" value="RibD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002734">
        <property type="entry name" value="RibDG_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00383">
        <property type="entry name" value="dCMP_cyt_deam_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01872">
        <property type="entry name" value="RibD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006769">
        <property type="entry name" value="RibD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53597">
        <property type="entry name" value="SSF53597"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53927">
        <property type="entry name" value="SSF53927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00326">
        <property type="entry name" value="eubact_ribD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00227">
        <property type="entry name" value="ribD_Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00903">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51747">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7 10 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="10 12" id="KW-0521">NADP</keyword>
    <keyword evidence="10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 10" id="KW-0686">Riboflavin biosynthesis</keyword>
    <keyword evidence="8 10 13" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="CMP/dCMP-type deaminase" evidence="14">
        <location>
            <begin position="4"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="11">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="53"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="78"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="87"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="157"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="171"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="173"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="187"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="199"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="203"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="207"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="210"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="296"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <begin position="298"/>
            <end position="304"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00007417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR006769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR006769-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR006769-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR006769-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KKO20287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="366" mass="39774" checksum="ED28610C4E4F2B9B" modified="2015-11-11" version="1">MTPDVDEKYMTIALELAEKGRGKVEPNPMVGAVLVKNGEIVGRGYHHAFGGPHAEIHAINEGGTNGKGATLYVSMEPCAHYGKTAPCVDAIIRAAIARVVMPVIDPNPITSGRGLQKLKETGIEVKLGIMESQARRLNAPFFKLMQTGLPYIIVKWAMSLDGKIATHGGDSRWITSEESRAYVHTIRGQVDGIIVGINTVLRDDPLLTCRLEGGRNPRRIIVDGNAVLPLHSRLIKTIGESEIMVAVTENAPHERIERLKHAGCKIIRTKGTDGRVDLQELFRYLGEMKLTNILVEGGSKIITSMIEGHFADKIIVFIAPVIIGGEGAMSPVRGKGVNIMGEAVKLAEINIRRFSNDIAVEGVPEY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWW6</accession>
    <name>A0A0M2UWW6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF2249 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00676</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20558">
        <property type="protein sequence ID" value="KKO20558"/>
        <property type="gene ID" value="BROFUL_00676"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.863"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018720">
        <property type="entry name" value="DUF2249"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10006">
        <property type="entry name" value="DUF2249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF2249" evidence="1">
        <location>
            <begin position="8"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="78" mass="9259" checksum="BFD06F2710E5BC3E" modified="2015-11-11" version="1">MNKTQPVVLDVRNIVPRERHPKIFNTFDALKKGEMMILINDHDPKPLKYQLDAERSGQLEWKYVEQGPEVWKVEITKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWZ3</accession>
    <name>A0A0M2UWZ3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Succinate--CoA ligase [ADP-forming] subunit beta</fullName>
            <ecNumber evidence="6">6.2.1.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Succinyl-CoA synthetase subunit beta</fullName>
            <shortName evidence="6">SCS-beta</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">sucC</name>
        <name evidence="9" type="ORF">BROFUL_01803</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>ATP + CoA + succinate = ADP + phosphate + succinyl-CoA</text>
            <dbReference type="Rhea" id="RHEA:17661"/>
            <dbReference type="ChEBI" id="CHEBI:30031"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57292"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.2.1.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="6">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Carbohydrate metabolism; tricarboxylic acid cycle; succinate from succinyl-CoA (ligase route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Heterotetramer of two alpha and two beta subunits.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the succinate/malate CoA ligase beta subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.2.1.5" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000188">
        <property type="protein sequence ID" value="KKO19491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19491">
        <property type="protein sequence ID" value="KKO19491"/>
        <property type="gene ID" value="BROFUL_01803"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2242"/>
    <dbReference type="UniPathway" id="UPA00223">
        <property type="reaction ID" value="UER00999"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004775">
        <property type="term" value="F:succinate-CoA ligase (ADP-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.261">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00558">
        <property type="entry name" value="Succ_CoA_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013650">
        <property type="entry name" value="ATP-grasp_succ-CoA_synth-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005811">
        <property type="entry name" value="CoA_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017866">
        <property type="entry name" value="Succ-CoA_synthase_bsu_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005809">
        <property type="entry name" value="Succ_CoA_synthase_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016102">
        <property type="entry name" value="Succinyl-CoA_synth-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11815">
        <property type="entry name" value="PTHR11815"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08442">
        <property type="entry name" value="ATP-grasp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00549">
        <property type="entry name" value="Ligase_CoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001554">
        <property type="entry name" value="SucCS_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52210">
        <property type="entry name" value="SSF52210"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01016">
        <property type="entry name" value="sucCoAbeta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01217">
        <property type="entry name" value="SUCCINYL_COA_LIG_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 6" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 6" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="domain" description="ATP-grasp_2" evidence="8">
        <location>
            <begin position="2"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="domain" description="Ligase_CoA" evidence="7">
        <location>
            <begin position="262"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding; shared with subunit alpha" evidence="6">
        <location>
            <begin position="321"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="46"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="53"/>
            <end position="55"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="99"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="102"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="107"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="199"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="213"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="264"/>
        </location>
        <ligand>
            <name>substrate</name>
            <note>ligand shared with subunit alpha</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00549"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF08442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="386" mass="41847" checksum="22433A9AE9DA30D7" modified="2015-11-11" version="1">MKLFEFQAKNILEAYGVCIPRGKVISQGDDVAKIFQEIGCNRCVIKAQILAGGRGKSGGVQFANSPEEAKIYVAGMLGSRLVTHQTGQRGTEIKYVLIEEALSIKRELYLAITIDRCLQSPVLIVSAEGGMEIEEVAKKTPGKIIKEPIDVFFGIHPFQVRRIASQLSISGTLATKLHALIVNLFDAFMEKDCSLLEINPLAVTVHDELCALDAKMDIDDNALYRHPEFNQFIPCQDISPAEALAREYRLSYIGLEGNIGCLVNGAGLAMATMDIIKLYGGEPANFLDVGGDASPEQVTQAFKIILSDPKVKAVLINIFGGIMKCDVIASGIIQAIHEIGIHIPLVIRLEGTNVEIAKKILEASGLKITSASDMKEAANLVVSKVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWZ6</accession>
    <name>A0A0M2UWZ6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Glucose-6-phosphate isomerase</fullName>
            <shortName evidence="7">GPI</shortName>
            <ecNumber evidence="7">5.3.1.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Phosphoglucose isomerase</fullName>
            <shortName evidence="7">PGI</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Phosphohexose isomerase</fullName>
            <shortName evidence="7">PHI</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">gpi</name>
        <name evidence="7" type="synonym">pgi</name>
        <name evidence="9" type="ORF">BROFUL_01792</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the reversible isomerization of glucose-6-phosphate to fructose-6-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 7 8">
            <text>alpha-D-glucose 6-phosphate = beta-D-fructose 6-phosphate</text>
            <dbReference type="Rhea" id="RHEA:11816"/>
            <dbReference type="ChEBI" id="CHEBI:57634"/>
            <dbReference type="ChEBI" id="CHEBI:58225"/>
            <dbReference type="EC" id="5.3.1.9"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Carbohydrate biosynthesis; gluconeogenesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 7 8">Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 2/4.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7 8">Belongs to the GPI family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.9" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000187">
        <property type="protein sequence ID" value="KKO19496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19496">
        <property type="protein sequence ID" value="KKO19496"/>
        <property type="gene ID" value="BROFUL_01792"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2222"/>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00181"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00138"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004347">
        <property type="term" value="F:glucose-6-phosphate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd05015">
        <property type="entry name" value="SIS_PGI_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd05016">
        <property type="entry name" value="SIS_PGI_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00473">
        <property type="entry name" value="G6P_isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001672">
        <property type="entry name" value="G6P_Isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018189">
        <property type="entry name" value="Phosphoglucose_isomerase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035476">
        <property type="entry name" value="SIS_PGI_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035482">
        <property type="entry name" value="SIS_PGI_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11469">
        <property type="entry name" value="PTHR11469"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00342">
        <property type="entry name" value="PGI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00662">
        <property type="entry name" value="G6PISOMERASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00765">
        <property type="entry name" value="P_GLUCOSE_ISOMERASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51463">
        <property type="entry name" value="P_GLUCOSE_ISOMERASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 7 8" id="KW-0312">Gluconeogenesis</keyword>
    <keyword evidence="4 7 8" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="5 7 8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton donor" evidence="7">
        <location>
            <position position="276"/>
        </location>
    </feature>
    <feature type="active site" evidence="7">
        <location>
            <position position="307"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006604"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00029321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000612"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="453" mass="50460" checksum="AF8B90B0CAD44FC8" modified="2015-11-11" version="1">MFRGEKINITENRAVLHVALRAPQGASILVDGKNVVPQVHAVLGKMADFSSRVRQGAWKGHTGKSIRNVVNIGIGGSDLGPVMAYEALKHYSDRRMTFRFVSNIDGTDFTEAVQDINPEETLFIISSKTFTTLETMTNAHTARAWLLKGLGGDEKSVAKHFVAVSTNETEVTKFGIDTVNMFGFWDWVGGRYSMDSAIGLSTMLAIGSDNFGAMLDGFHQMDEHFRITPFERNLPVLMALLTIWYTGFFDAHTIAVLPYEQYLRRFPAYLQQLTMESNGKYITLNGMKVDYQTSPVYWGEPGTNGQHSFYQLIHQGTRLIPCDFIAFDRSLNPPGRHHDILMANVFAQAEALAFGKTAEQVRAEGTPAGLCRIGFLRAIVLQILSWQTGSPLKYWENSLPSMSIVSSPRVLSGRLIRSISGVSNWARCWPSVLSPNLRANRSLSLPMTVRQIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX16</accession>
    <name>A0A0M2UX16_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 11">tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10 11">Glucose-inhibited division protein A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">mnmG</name>
        <name evidence="11" type="synonym">gidA</name>
        <name evidence="14" type="ORF">BROFUL_02225</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 11">NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 11">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="9 11">Homodimer. Heterotetramer of two MnmE and two MnmG subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 11">Belongs to the MnmG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19044.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19044">
        <property type="protein sequence ID" value="KKO19044"/>
        <property type="gene ID" value="BROFUL_02225"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2778"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002098">
        <property type="term" value="P:tRNA wobble uridine modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.570">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00129">
        <property type="entry name" value="MnmG_GidA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004416">
        <property type="entry name" value="MnmG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002218">
        <property type="entry name" value="MnmG-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020595">
        <property type="entry name" value="MnmG-rel_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026904">
        <property type="entry name" value="MnmG_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044920">
        <property type="entry name" value="MnmG_C_subdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040131">
        <property type="entry name" value="MnmG_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11806">
        <property type="entry name" value="PTHR11806"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11806:SF0">
        <property type="entry name" value="PTHR11806:SF0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01134">
        <property type="entry name" value="GIDA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13932">
        <property type="entry name" value="GIDA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00136">
        <property type="entry name" value="gidA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01280">
        <property type="entry name" value="GIDA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01281">
        <property type="entry name" value="GIDA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 11" id="KW-0274">FAD</keyword>
    <keyword evidence="5 11" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="8 11" id="KW-0520">NAD</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 11" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="GIDA" evidence="12">
        <location>
            <begin position="6"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="domain" description="GIDA_C" evidence="13">
        <location>
            <begin position="398"/>
            <end position="595"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="11"/>
            <end position="16"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="270"/>
            <end position="284"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007653"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00020461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00025948"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00031800"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00129"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF01134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF13932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KKO19044.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="604" mass="67287" checksum="074AC1EA6BA57AC3" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX54</accession>
    <name>A0A0M2UX54_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Sulfotransferase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01155</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000124">
        <property type="protein sequence ID" value="KKO20130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20130">
        <property type="protein sequence ID" value="KKO20130"/>
        <property type="gene ID" value="BROFUL_01155"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008476">
        <property type="term" value="F:protein-tyrosine sulfotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006478">
        <property type="term" value="P:peptidyl-tyrosine sulfation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026634">
        <property type="entry name" value="TPST"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12788">
        <property type="entry name" value="PTHR12788"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="343" mass="39484" checksum="A2A387D18515FE6E" modified="2015-11-11" version="1">METMESDNRVNALDCNAPLFVVGCYRSGTSLLRLILNAHSKIYIGGETGYIPIFGAQLNAFGDLSIDSNLFTLLHEINKYLKRRVHGWEKLPSAEVIIKRLKKRTFQDIVMNINAYFNTKSTVEIWGDKTPLYVNSIIFLGKLFPISKFINIVRDGRDVAVSALRAKLGGTNLADISLEWNECVLNGMLAERYFGPDRVMTVRYEDLVSDPKKTLLTICNYLKINYEESMLQYYASSDAQTASNIKHHGNVAKPIFSDSVGGYKKTLKQDQRKALELYMWNTLMTYGYDLEFDFMPPPPRYRRYLALLHSWVNLILRSTLLKFTRRIWAPHKKIEANNVLREK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX79</accession>
    <name>A0A0M2UX79_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">dTDP-4-dehydrorhamnose 3,5-epimerase</fullName>
            <ecNumber evidence="3">5.1.3.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Thymidine diphospho-4-keto-rhamnose 3,5-epimerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00601</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>dTDP-4-dehydro-6-deoxy-alpha-D-glucose = dTDP-4-dehydro-beta-L-rhamnose</text>
            <dbReference type="Rhea" id="RHEA:16969"/>
            <dbReference type="ChEBI" id="CHEBI:57649"/>
            <dbReference type="ChEBI" id="CHEBI:62830"/>
            <dbReference type="EC" id="5.1.3.13"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Carbohydrate biosynthesis; dTDP-L-rhamnose biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.1.3.13" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000083">
        <property type="protein sequence ID" value="KKO20673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20673">
        <property type="protein sequence ID" value="KKO20673"/>
        <property type="gene ID" value="BROFUL_00601"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.757"/>
    <dbReference type="UniPathway" id="UPA00124"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008830">
        <property type="term" value="F:dTDP-4-dehydrorhamnose 3,5-epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019305">
        <property type="term" value="P:dTDP-rhamnose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000888">
        <property type="entry name" value="dTDP_sugar_isom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21047">
        <property type="entry name" value="PTHR21047"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00908">
        <property type="entry name" value="dTDP_sugar_isom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01221">
        <property type="entry name" value="rmlC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="1">
        <location>
            <position position="133"/>
        </location>
    </feature>
    <feature type="site" description="Participates in a stacking interaction with the thymidine ring of dTDP-4-oxo-6-deoxyglucose" evidence="2">
        <location>
            <position position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR600888-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR600888-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU364069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="186" mass="21285" checksum="3E1879A5A1D81B95" modified="2015-11-11" version="1">MPFSFKKLAIPEVLLIEPAVFPDTRGAFAELYKYPDFFRAGIPKQIVQINYSRSDRYVLRGLHYQKNPMAQGKIMSVLSGEIFDVAVDIRQGSPSYRKWVCETLSSANMKMLYIPEGFAHGFCVLSEKAEITYQCTNTYSPEHERGILWNDPDLAIPWPLNHPLLSEKDGRFPPLKNADNNFVYGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX94</accession>
    <name>A0A0M2UX94_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00581</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000081">
        <property type="protein sequence ID" value="KKO20693.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20693">
        <property type="protein sequence ID" value="KKO20693"/>
        <property type="gene ID" value="BROFUL_00581"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005358">
        <property type="entry name" value="Puta_zinc/iron-chelating_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03692">
        <property type="entry name" value="CxxCxxCC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20693.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="143" mass="16825" checksum="49F5A4CFCAC1FF09" modified="2015-11-11" version="1">MGSPPALENLYSELEALYQRLEEELTVLNPGCNGCGTCCKFSTFDHVLYASSIEVDFIKRNREIPDFNVTDNVCPFLKDNQCSIRDFRTLGCRIFYCNPSYKQILCEMYEKYYRMIKELGIKYDVSWRYLPFLNQLVRFKSTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXG3</accession>
    <name>A0A0M2UXG3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">GTP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00500</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000069">
        <property type="protein sequence ID" value="KKO20773.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20773">
        <property type="protein sequence ID" value="KKO20773"/>
        <property type="gene ID" value="BROFUL_00500"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025529">
        <property type="entry name" value="DUF4416"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14385">
        <property type="entry name" value="DUF4416"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20773.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="136" mass="15466" checksum="F29414A4BEFBB4D9" modified="2015-11-11" version="1">MGHISKPKPVNLIIGVLTNIPGLPGEMEKTLTTSFGTIDLKSDILPFHFTEYYHEEMGEEIKRQFYSFQKLISPDEIAAIKVQTNSMEEAVADSRKYSVKRPVNIDPGYLNESRLILASTKDFSHRIYLQNGIYAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXI1</accession>
    <name>A0A0M2UXI1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Protein HflK</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_00989</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">HflC and HflK could encode or regulate a protease.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">HflC and HflK may interact to form a multimeric complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the band 7/mec-2 family. HflK subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000118">
        <property type="protein sequence ID" value="KKO20280.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20280">
        <property type="protein sequence ID" value="KKO20280"/>
        <property type="gene ID" value="BROFUL_00989"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03404">
        <property type="entry name" value="SPFH_HflK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001107">
        <property type="entry name" value="Band_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036013">
        <property type="entry name" value="Band_7/SPFH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010201">
        <property type="entry name" value="HflK"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43327:SF2">
        <property type="entry name" value="PTHR43327:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01145">
        <property type="entry name" value="Band_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00244">
        <property type="entry name" value="PHB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117892">
        <property type="entry name" value="SSF117892"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01933">
        <property type="entry name" value="hflK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="PHB" evidence="6">
        <location>
            <begin position="86"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU364113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20280.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="378" mass="43536" checksum="D1FE60E2F6BE2C78" modified="2015-11-11" version="1">MLRGISDRSHKRNNPLNLPLLRWAKEGCKKTEGKRYSSRKGENDMPSYDPYRKPQEIRLEDIPWGSIKKFIPPSLIIVFIIITGYTSFYTVKANEEAVVLRFGRYIKTVGPGLHSKIPYHIDRVLKGEVKRIYNEEFGFRTESRGASFAVNYDYPDAAEEKLMLTGDLNCAEVHWVIRYKIKLIEEYYFNVRNVRETIRGVSQAVMRTLVGDRSVDEVLTIGRTEIEQKAREDIQSVLDSYKCGIDIQTVLLKGVDPPAPVKDAFNAVNQAIQIRDRIVNDAEGQKNKILPAAEGKKEQVIKEAEGYRIRRVNEATGDVRAFLAVFEEYKKAEDVTRRRLFLETMAKILPKCEKLYVFDKEIEGFLPILGLHEEDVKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXI9</accession>
    <name>A0A0M2UXI9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02111</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000211">
        <property type="protein sequence ID" value="KKO19184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19184">
        <property type="protein sequence ID" value="KKO19184"/>
        <property type="gene ID" value="BROFUL_02111"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="73" mass="8188" checksum="8A6CDD34C60755BC" modified="2015-11-11" version="1">MLKVDYTTQNDTTGYYEEVQTSVSMKFDNAFLGLIARAASPILNRKLDKLITKLAAKTKKVVEDAYAKKKATK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXK0</accession>
    <name>A0A0M2UXK0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Histidine kinase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00974</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000117">
        <property type="protein sequence ID" value="KKO20300.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20300">
        <property type="protein sequence ID" value="KKO20300"/>
        <property type="gene ID" value="BROFUL_00974"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1222"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016772">
        <property type="term" value="F:transferase activity, transferring phosphorus-containing groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Histidine kinase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20300.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="142" mass="15700" checksum="7AC46D87FAB1272B" modified="2015-11-11" version="1">MSDLEIKIEQTGGTVKLGDLPIIDADPLQMRQLFQNLIGNALKFQRKGGSPVVDIRACMLDDQENGSDGNAHRPVCQITFEDNGIGFDEKYADRIFGVFQRLHGRDEYEGTGIGLSICKKIAERHDGKIEAKSAPGREPRLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXM0</accession>
    <name>A0A0M2UXM0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02063</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000208">
        <property type="protein sequence ID" value="KKO19219.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19219">
        <property type="protein sequence ID" value="KKO19219"/>
        <property type="gene ID" value="BROFUL_02063"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644071" evidence="1">
        <location>
            <begin position="19"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19219.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="73" mass="8159" checksum="068470C6105B18E7" modified="2015-11-11" version="1">MKRHLVMCCMIAYCVCCAHLIGCGGGGAEIKQTTTNTSLGQELQDLDTAYQKKIITEKEYKNAKEKLLKKYAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXQ3</accession>
    <name>A0A0M2UXQ3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">2-oxoglutarate ferredoxin oxidoreductase alpha subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00615</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20632">
        <property type="protein sequence ID" value="KKO20632"/>
        <property type="gene ID" value="BROFUL_00615"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.778"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07034">
        <property type="entry name" value="TPP_PYR_PFOR_IOR-alpha_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002880">
        <property type="entry name" value="Pyrv_Fd/Flavodoxin_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01855">
        <property type="entry name" value="POR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="POR_N" evidence="1">
        <location>
            <begin position="16"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="338" mass="38196" checksum="998CEB7E7650D1F8" modified="2015-11-11" version="1">MPKQLLQGNEAIVQAAEIAGLQFFAGYPITPASEIIHELVNKKDIKALQMEDEIASINAIIGASLAGLKAMTATSGPGFSLMQESIGLAHMMEVPLVIVNVQRVGPSTGMPTLPAQGDIIQCAHGSHGDYFPIVFYPNSVSELYRYTIAAFNAAEESMSPVILLSDGYISHLYETIEPRRDFAITIRNRPALGTGNRHFTGLSHEDSVPKTSDADNYRRLITRFREKQQTTARRHNYYEYLECSGETDTLLISYGVLSRIAYYFKNDFALYRPIRMFPVVEEIRSIAPRYKRLLMMEMNMGQYVYEIERILHREVEFIPILGGRIDLKEIKQSIYGQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXT6</accession>
    <name>A0A0M2UXT6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Protease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01508</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the peptidase S41A family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000155">
        <property type="protein sequence ID" value="KKO19781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19781">
        <property type="protein sequence ID" value="KKO19781"/>
        <property type="gene ID" value="BROFUL_01508"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1862"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008236">
        <property type="term" value="F:serine-type peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd07560">
        <property type="entry name" value="Peptidase_S41_CPP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041489">
        <property type="entry name" value="PDZ_6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004447">
        <property type="entry name" value="Peptidase_S41A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005151">
        <property type="entry name" value="Tail-specific_protease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17820">
        <property type="entry name" value="PDZ_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03572">
        <property type="entry name" value="Peptidase_S41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00228">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00245">
        <property type="entry name" value="TSPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="SSF50156"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00225">
        <property type="entry name" value="prc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50106">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 6" id="KW-0645">Protease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0720">Serine protease</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644077" evidence="4">
        <location>
            <begin position="22"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="domain" description="PDZ" evidence="5">
        <location>
            <begin position="99"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009179"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU004404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="324" mass="36245" checksum="5B35B650E681AEEE" modified="2015-11-11" version="1">MKQRPSFFVVFIILLLLNANAFGQAKVIEKPLTEVKEDVKEESKSVYEEFEEFLRIVKELQDKYVDELKLNTILTNAYRGMLSGLDPYSQYFGTEELEDLKIETEGEFEGLGIEVIIKEGLLIVITPILDSPAFKAGILVGDRIIRIDGASTENMSIREAVKKLRGKLGTKITLTVVHEGDTAPVDITIERAKIYVNSIRGARIVDDEYKIGYLAVSNFQENTVKDMDIAVQDLLKNGMKSMVLDLRFNPGGLLNAAVDMADKFLEKGIIVSTRGRDKTQNYVYQAHKKGTYPRFPLVILVNNGSASASEIVAGALKDHKRVYC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXV1</accession>
    <name>A0A0M2UXV1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00871</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000106">
        <property type="protein sequence ID" value="KKO20400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20400">
        <property type="protein sequence ID" value="KKO20400"/>
        <property type="gene ID" value="BROFUL_00871"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1102"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="121" mass="13503" checksum="411AAC9418CBD2DC" modified="2015-11-11" version="1">MADGERGAPYSRMYDLKTVETISGEVVSVDVITPVKGMCYGVHLMVKTEKETISVHLGPGWYIENQDTKIEPKDKVEVTGSRITLDGKPAIIATEVKKGEEILKLRDEKGVPLWSGWRKRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXW2</accession>
    <name>A0A0M2UXW2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01474</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000151">
        <property type="protein sequence ID" value="KKO19806.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19806">
        <property type="protein sequence ID" value="KKO19806"/>
        <property type="gene ID" value="BROFUL_01474"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644152" evidence="1">
        <location>
            <begin position="24"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19806.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="141" mass="15634" checksum="F463D146C9C2E2FE" modified="2015-11-11" version="1">MKAILIVLAACLTLSGCATIESAARNQFAFVNYEKTNYQAKPEGCPIDLFFGDKMPTRDYVVIGEINGFIIHEKNITPIIEEKTRQVGGDGVIQIRTTMRMRSGGTVAIPVGNLYVLDEQEQMETAISGKVIKYTDTEQRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY30</accession>
    <name>A0A0M2UY30_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01425</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000146">
        <property type="protein sequence ID" value="KKO19866.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19866">
        <property type="protein sequence ID" value="KKO19866"/>
        <property type="gene ID" value="BROFUL_01425"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19866.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="64" mass="7489" checksum="280CFDEC9AFD0FC1" modified="2015-11-11" version="1">MVQEMFAPSFNEIVNEQNYDIVMKKNRQKKSQANSIQRQICSYNLFVYCKKSLVVIIIDGESLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY83</accession>
    <name>A0A0M2UY83_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative cytochrome b6</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00219</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000027">
        <property type="protein sequence ID" value="KKO21048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21048">
        <property type="protein sequence ID" value="KKO21048"/>
        <property type="gene ID" value="BROFUL_00219"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.268"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022904">
        <property type="term" value="P:respiratory electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.810.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005797">
        <property type="entry name" value="Cyt_b/b6_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027387">
        <property type="entry name" value="Cytb/b6-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016174">
        <property type="entry name" value="Di-haem_cyt_TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00033">
        <property type="entry name" value="Cytochrome_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81342">
        <property type="entry name" value="SSF81342"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51002">
        <property type="entry name" value="CYTB_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="77"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="133"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="163"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="243"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="domain" description="CYTB_NTER" evidence="2">
        <location>
            <begin position="44"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO21048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="275" mass="31609" checksum="B57428ECDFB48FED" modified="2015-11-11" version="1">MIHKPTENIWTKYKALLKEKGCFGMLKEVTVNSQVWKSVFRHTFADTPKNRMLKVVSNVFMHLHPAKVKRHAPQLKFTWCMGGISFFLFLVLTFTGVLLMFYYRPTVHDAYWDIKDLEYQVPFGAILRNLHRWSAHLMVITVWFHMFRVFATGSYKPPREFNWCVGVVLLVLTLLLSFTGYLLTWDQLGFWAVTVGTNMARSTPLIGHEGPFGEQLGMTAHNDVRFALLGGSLVGGNALLRAYVWHCIGLPLIISIFMMVHFWRIRKDGGISGPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYG3</accession>
    <name>A0A0M2UYG3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01293</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20021">
        <property type="protein sequence ID" value="KKO20021"/>
        <property type="gene ID" value="BROFUL_01293"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="20"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="49"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="50"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="80" mass="8955" checksum="C6430B7D3FFA8501" modified="2015-11-11" version="1">MAYLTCFRVMLSNSISFFNQTAASVIMITIRAGLQIMATVIGAGDTFMKPPHRKTQEEIGNNERNKKDIPNVSFSVKVFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYM8</accession>
    <name>A0A0M2UYM8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00360</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000044">
        <property type="protein sequence ID" value="KKO20927.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20927">
        <property type="protein sequence ID" value="KKO20927"/>
        <property type="gene ID" value="BROFUL_00360"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013321">
        <property type="entry name" value="Arc_rbn_hlx_hlx"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20927.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="54" mass="6322" checksum="931A2BD62CCB9C82" modified="2015-11-11" version="1">MTDTERIILNIPKEMLERIDDFRRKQEVIPSRAAAIRHLLEKSLGTSKKETSKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYQ8</accession>
    <name>A0A0M2UYQ8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00321</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000039">
        <property type="protein sequence ID" value="KKO20952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20952">
        <property type="protein sequence ID" value="KKO20952"/>
        <property type="gene ID" value="BROFUL_00321"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="55" mass="6340" checksum="184D584BD2688535" modified="2015-11-11" version="1">MFTAIEKRLNGRTTSKVERVMRTVNLRVNVSKWSVTGALNVTKIRLAYYYNGFDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYR7</accession>
    <name>A0A0M2UYR7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8">Carbonic anhydrase</fullName>
            <ecNumber evidence="3 8">4.2.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_01176</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Reversible hydration of carbon dioxide.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>H(+) + hydrogencarbonate = CO2 + H2O</text>
            <dbReference type="Rhea" id="RHEA:10748"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="EC" id="4.2.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 8">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the alpha-carbonic anhydrase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.1" evidence="3 8"/>
    <dbReference type="EMBL" id="LAQJ01000126">
        <property type="protein sequence ID" value="KKO20101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20101">
        <property type="protein sequence ID" value="KKO20101"/>
        <property type="gene ID" value="BROFUL_01176"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1455"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004089">
        <property type="term" value="F:carbonate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03124">
        <property type="entry name" value="alpha_CA_prokaryotic_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.200.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041891">
        <property type="entry name" value="Alpha_CA_prokaryot-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001148">
        <property type="entry name" value="CA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036398">
        <property type="entry name" value="CA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023561">
        <property type="entry name" value="Carbonic_anhydrase_a-class"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018338">
        <property type="entry name" value="Carbonic_anhydrase_a-class_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18952">
        <property type="entry name" value="PTHR18952"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00194">
        <property type="entry name" value="Carb_anhydrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01057">
        <property type="entry name" value="Carb_anhydrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51069">
        <property type="entry name" value="SSF51069"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00162">
        <property type="entry name" value="ALPHA_CA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51144">
        <property type="entry name" value="ALPHA_CA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0456">Lyase</keyword>
    <keyword evidence="5 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0732">Signal</keyword>
    <keyword evidence="6 8" id="KW-0862">Zinc</keyword>
    <feature type="signal peptide" evidence="8">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5025087579" description="Carbonic anhydrase" evidence="8">
        <location>
            <begin position="27"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="domain" description="Alpha-carbonic anhydrase" evidence="9">
        <location>
            <begin position="35"/>
            <end position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012925"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00014628"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU367011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO20101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="262" mass="29677" checksum="39CEB7F1E524CB3F" modified="2015-11-11" version="1">MKTFKQVLLTSAIVFLSFIAATSLFAGVGEHLPPDHWDYEGEKGPDHWGELKRKYCKCRIGNMQSPINISITKKAKLNDIIFHYNPTPLRIINNGHTIQVNYKRGSSISIGHRTFELIQFHFHTPSEHLINGKSYAMEAHLVHRGKHGRLAVVAILIEEGHGNAFIETLWSNFPKEMGEEHIVSDVRICASQLLPKNTTAYYKYTGSLTTPPCSEIVSWFILKSPIEVSKTELSKFTSLFKHNARPIQPVHGRVVKENLVHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ19</accession>
    <name>A0A0M2UZ19_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00391</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000052">
        <property type="protein sequence ID" value="KKO20875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20875">
        <property type="protein sequence ID" value="KKO20875"/>
        <property type="gene ID" value="BROFUL_00391"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="203" mass="24489" checksum="03229869DC120FE1" modified="2015-11-11" version="1">MEKFLERYHNKITGVLSTFDRMLFKGHFLPFFQKSKRHQYLFQEKVLLKNFGTYAKKVSEVIKDNARELSSKESRPLIHLDSSRISKEDLARKIQEEDRVKEGLICVLKGVEPCVSFDVRGNKEKQKLEVVIRERKCLFLYFYYQHKEFGFMQVRIQTWFPFQIQIYINGREWLPNDWMERASGIKDTITAWFRLMMESGRKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ20</accession>
    <name>A0A0M2UZ20_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA (cytosine-5-)-methyltransferase</fullName>
            <ecNumber evidence="2">2.1.1.37</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">dcm_4</name>
        <name evidence="8" type="ORF">BROFUL_01575</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 2'-deoxycytidine in DNA + S-adenosyl-L-methionine = a 5-methyl-2'-deoxycytidine in DNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:13681"/>
            <dbReference type="Rhea" id="RHEA-COMP:11369"/>
            <dbReference type="Rhea" id="RHEA-COMP:11370"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:85452"/>
            <dbReference type="ChEBI" id="CHEBI:85454"/>
            <dbReference type="EC" id="2.1.1.37"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="6 7">Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.37" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000165">
        <property type="protein sequence ID" value="KKO19714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19714">
        <property type="protein sequence ID" value="KKO19714"/>
        <property type="gene ID" value="BROFUL_01575"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1942"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003886">
        <property type="term" value="F:DNA (cytosine-5-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001525">
        <property type="entry name" value="C5_MeTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00145">
        <property type="entry name" value="DNA_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00105">
        <property type="entry name" value="C5METTRFRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00675">
        <property type="entry name" value="dcm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51679">
        <property type="entry name" value="SAM_MT_C5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6 8" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0680">Restriction system</keyword>
    <keyword evidence="6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4 6 8" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000743"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="142" mass="15870" checksum="7DCE55F25749D506" modified="2015-11-11" version="1">MNTRNNHNCAGLRYIDLFCGIGGFRLAIEDVCRKNGVQAECVFSCEIDEECRKSYLANFSDLPHGDITQISEKAVPDHEILLAGFPYQPFSIIGKRKGFEDTRGTLFFDIARIIQAKQPTAFVLENVKLLSGHNQGKTLVTC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ39</accession>
    <name>A0A0M2UZ39_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">mRNA interferase</fullName>
            <ecNumber evidence="1">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00174</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Toxic component of a type II toxin-antitoxin (TA) system.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the PemK/MazF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="1"/>
    <dbReference type="EMBL" id="LAQJ01000018">
        <property type="protein sequence ID" value="KKO21092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21092">
        <property type="protein sequence ID" value="KKO21092"/>
        <property type="gene ID" value="BROFUL_00174"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003477">
        <property type="entry name" value="PemK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011067">
        <property type="entry name" value="Plasmid_toxin/cell-grow_inhib"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33988">
        <property type="entry name" value="PTHR33988"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02452">
        <property type="entry name" value="PemK_toxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF033490">
        <property type="entry name" value="MazF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR033490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="112" mass="12836" checksum="A9B4F281FDA87B87" modified="2015-11-11" version="1">MKQKEIWLINLDPSIGAEIKKTRPCVILNDDSIGVLPLKVVAPITDYKEKYEIVPWMVQLIPDKLNNLKKISVIDVFQVRSVSEKRLIRKLGVIREDDILKAKEALKLVFGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ61</accession>
    <name>A0A0M2UZ61_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cardiolipin synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">cls</name>
        <name evidence="3" type="ORF">BROFUL_01535</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000158">
        <property type="protein sequence ID" value="KKO19759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19759">
        <property type="protein sequence ID" value="KKO19759"/>
        <property type="gene ID" value="BROFUL_01535"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025202">
        <property type="entry name" value="PLD-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001736">
        <property type="entry name" value="PLipase_D/transphosphatidylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015679">
        <property type="entry name" value="PLipase_D_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18896">
        <property type="entry name" value="PTHR18896"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13091">
        <property type="entry name" value="PLDc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50035">
        <property type="entry name" value="PLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PLD phosphodiesterase" evidence="2">
        <location>
            <begin position="720"/>
            <end position="747"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="836" mass="95064" checksum="6116119B44DE7833" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ69</accession>
    <name>A0A0M2UZ69_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Reverse transcriptase (RNA-dependent DNA polymerase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00147</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000017">
        <property type="protein sequence ID" value="KKO21102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21102">
        <property type="protein sequence ID" value="KKO21102"/>
        <property type="gene ID" value="BROFUL_00147"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013597">
        <property type="entry name" value="Mat_intron_G2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08388">
        <property type="entry name" value="GIIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="SSF56672"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="2">
        <location>
            <begin position="1"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="26"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO21102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="199" mass="23581" checksum="F23C78986B619E3D" modified="2015-11-11" version="1">MWLSKHYPKASFVRYADDVVVHCTSKAEAERVLETIKERLAEVKLKIKEEKIRIAYCSDYRRKGSHEVVKFEFLGFSYQPGARKSIKDGKQYKAFAAEISQSNQKRIREVIREMRLWSNTVVEVSSIAKLPNAKLRGWIAYYGKYSIRSLRNTLLMIDRRLIKWLRKKHKIGYRKSVAKLNLIKQANPELFYHWKMGYC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZA8</accession>
    <name>A0A0M2UZA8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00975</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000117">
        <property type="protein sequence ID" value="KKO20301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20301">
        <property type="protein sequence ID" value="KKO20301"/>
        <property type="gene ID" value="BROFUL_00975"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1223"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="9"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="146" mass="16732" checksum="A4C04E577C0428F5" modified="2015-11-11" version="1">MSERKKPITILMADDDPDDRFMTKEAFREATLINDLRFVVDGEELLDYLYHRGRFADPADAPRPGLILLDLNMPRKDGREALAEIKTDPDLRRISVVILTTSKAEEDIIRTYDLGSNSYITKPVSFESLVAIMKALSKYWLEIVLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZE2</accession>
    <name>A0A0M2UZE2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ABC transporter ATP-binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_01451</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000147">
        <property type="protein sequence ID" value="KKO19849.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19849">
        <property type="protein sequence ID" value="KKO19849"/>
        <property type="gene ID" value="BROFUL_01451"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1788"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="20"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="65"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="137"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="166"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="253"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="39"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="343"/>
            <end position="577"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="376"/>
            <end position="383"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19849.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="589" mass="66912" checksum="A5F25EF5DD4260C4" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZN6</accession>
    <name>A0A0M2UZN6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Endonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00856</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000105">
        <property type="protein sequence ID" value="KKO20431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20431">
        <property type="protein sequence ID" value="KKO20431"/>
        <property type="gene ID" value="BROFUL_00856"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1082"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00085">
        <property type="entry name" value="HNHc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029471">
        <property type="entry name" value="HNH_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003615">
        <property type="entry name" value="HNH_nuc"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14279">
        <property type="entry name" value="HNH_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00507">
        <property type="entry name" value="HNHc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HNHc" evidence="1">
        <location>
            <begin position="105"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00507"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="211" mass="24644" checksum="E7B3E3AA1570C3EC" modified="2015-11-11" version="1">MQYIASLESSVLVLNKFFMALHIISAKRAFVLLCKETAEVVSVDEGKFNSYDFYGWKDVSLYKARSGLPEEDTTSWIKTVSFEIEVPKIIRLLFYDKHPQSNVKFNRRNIFARDENKCQYCGRRFPTMELSLDHIVPKAYNGKTTWTNIVCACTECNKLKGGRTPEEASMRLIRKPVKPRHSPILSLKLRSDRYRSWKQFLNEAYWSVPLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZR1</accession>
    <name>A0A0M2UZR1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4">Triosephosphate isomerase</fullName>
            <shortName evidence="3">TIM</shortName>
            <shortName evidence="3">TPI</shortName>
            <ecNumber evidence="3 4">5.3.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Triose-phosphate isomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">tpiA</name>
        <name evidence="5" type="ORF">BROFUL_00812</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 4">
            <text>D-glyceraldehyde 3-phosphate = dihydroxyacetone phosphate</text>
            <dbReference type="Rhea" id="RHEA:18585"/>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="5.3.1.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 4">Carbohydrate biosynthesis; gluconeogenesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 4">Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate from glycerone phosphate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 4">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3 4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the triosephosphate isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.1" evidence="3 4"/>
    <dbReference type="EMBL" id="LAQJ01000103">
        <property type="protein sequence ID" value="KKO20456.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20456">
        <property type="protein sequence ID" value="KKO20456"/>
        <property type="gene ID" value="BROFUL_00812"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1028"/>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00189"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00138"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004807">
        <property type="term" value="F:triose-phosphate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00311">
        <property type="entry name" value="TIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00147_B">
        <property type="entry name" value="TIM_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035990">
        <property type="entry name" value="TIM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022896">
        <property type="entry name" value="TrioseP_Isoase_bac/euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000652">
        <property type="entry name" value="Triosephosphate_isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020861">
        <property type="entry name" value="Triosephosphate_isomerase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21139">
        <property type="entry name" value="PTHR21139"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00121">
        <property type="entry name" value="TIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51351">
        <property type="entry name" value="SSF51351"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00419">
        <property type="entry name" value="tim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00171">
        <property type="entry name" value="TIM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51440">
        <property type="entry name" value="TIM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 3 4" id="KW-0312">Gluconeogenesis</keyword>
    <keyword evidence="3 4" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="2 3 4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="3">
        <location>
            <begin position="223"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="active site" description="Electrophile" evidence="3">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="156"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="162"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="202"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00147"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20456.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="242" mass="26679" checksum="BBCE421252118B89" modified="2015-11-11" version="1">MNLTLKQGREFAGLMKNSLRGRNEIECGICPPFVFLKEICDILEGSPICVAAQNIHSEKNGAYTGEVSALMVKEIGCTHVLIGHSERRHIFRETDAFIHAKIKTALAVNLKPIFCIGETLDEREAGRTKEVIQNQLKEGLRDIRADQLKELVIAYEPVWAIGTGKTALPEQANEVHSFIRNIVTAGYGENLARSISLQYGGSVKAENAKELMAQPEIDGLLVGGASIQWESFFKIIEAVSKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZU3</accession>
    <name>A0A0M2UZU3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Transcription termination factor Rho</fullName>
            <ecNumber evidence="8">3.6.4.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">ATP-dependent helicase Rho</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">rho</name>
        <name evidence="11" type="ORF">BROFUL_01286</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homohexamer. The homohexamer assembles into an open ring structure.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8 9">Belongs to the Rho family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.-" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20014">
        <property type="protein sequence ID" value="KKO20014"/>
        <property type="gene ID" value="BROFUL_01286"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1587"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008186">
        <property type="term" value="F:ATP-dependent activity, acting on RNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006353">
        <property type="term" value="P:DNA-templated transcription, termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04459">
        <property type="entry name" value="Rho_CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01128">
        <property type="entry name" value="rho_factor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01884">
        <property type="entry name" value="Rho"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000194">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_nucl-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011129">
        <property type="entry name" value="CSD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041703">
        <property type="entry name" value="Rho_factor_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011112">
        <property type="entry name" value="Rho_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036269">
        <property type="entry name" value="Rho_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011113">
        <property type="entry name" value="Rho_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004665">
        <property type="entry name" value="Term_rho"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46425">
        <property type="entry name" value="PTHR46425"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00006">
        <property type="entry name" value="ATP-synt_ab"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07498">
        <property type="entry name" value="Rho_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07497">
        <property type="entry name" value="Rho_RNA_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00357">
        <property type="entry name" value="CSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00959">
        <property type="entry name" value="Rho_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF68912">
        <property type="entry name" value="SSF68912"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00767">
        <property type="entry name" value="rho"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51856">
        <property type="entry name" value="RHO_RNA_BD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 8" id="KW-0347">Helicase</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8 9" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="7 8" id="KW-0804">Transcription</keyword>
    <keyword evidence="6 8" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="1 8" id="KW-0806">Transcription termination</keyword>
    <feature type="domain" description="Rho RNA-BD" evidence="10">
        <location>
            <begin position="76"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="194"/>
            <end position="199"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="206"/>
            <end position="211"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="237"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51856"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO20014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="444" mass="50346" checksum="F4B334BAFF234D7D" modified="2015-11-11" version="1">MSAPNGKKEPVVVDQETNEKYEEIKRGEMHITELQKMTIKELQETAKNEGIKEYTGLKKQDLIFKILKERVNQNGLMYGEGVVEVLPEGFGFLRSPDYNYLPCPDDIYISPSQIRRFGIRTGVIVSGQIRPPKDTERYFALLRVEAINFENPEIMGEKIVFDDLTPLHPTERIFLEKSPTEFETRIMDLVTPIGKGQRGLIVAPPRTGKTVLLQKIANSITKNHPEVYLIILLIDERPEEVTDMARSVEAEVIGSTFDEPASRHIQVAEMVIEKAKRMVEYGKDVVVLLDSITRLARAYNTEVPHSGKILSGGVDASALQKPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLADRRLFPAIDITRSGTRKEELIVNAEEIKRMWMLRKVLNEMNPIEAMELLKNRLAKSKTNAEFLMTMNIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZZ1</accession>
    <name>A0A0M2UZZ1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01164</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000126">
        <property type="protein sequence ID" value="KKO20089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20089">
        <property type="protein sequence ID" value="KKO20089"/>
        <property type="gene ID" value="BROFUL_01164"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="91"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="236" mass="27098" checksum="34BD73045C018C40" modified="2015-11-11" version="1">MILSALFRFITTHSRNHVPLQKRGEGGGKKTGKKSGILRGNMIAILPLFLLPFAGCTTTSRIGTDNWRDYFKPGHTKEEIARDFNLYRGKWWNYYVRGRWFAEGGFYDEAAQDFRKAISLRSQDQRSARSYGMHFWEYFAHRELGVIYYHQGKYEDAKKELEMSRSTADSARAKYYLNKSNEAMIKMTKMDIKPPEIRITSHTNGQVVNTPAAHIRGVATDDAYVNGMSIQGRSCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0C2</accession>
    <name>A0A0M2V0C2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">YHS domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01027</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20179">
        <property type="protein sequence ID" value="KKO20179"/>
        <property type="gene ID" value="BROFUL_01027"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.620.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012348">
        <property type="entry name" value="RNR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011017">
        <property type="entry name" value="TRASH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010507">
        <property type="entry name" value="Znf_MYM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06467">
        <property type="entry name" value="zf-FCS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00746">
        <property type="entry name" value="TRASH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644214" evidence="1">
        <location>
            <begin position="22"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="domain" description="TRASH" evidence="2">
        <location>
            <begin position="47"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="95" mass="10324" checksum="DE22DDD1541B6442" modified="2015-11-11" version="1">MKRIVHFASAAALAFFPTAFYVNSTIIAGECCSAKQVSTAEKAETKCVACGKAISDKEKAVKVEHEGKSIYLCCEGCADKFKKNPGECMRDKDHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1C4</accession>
    <name>A0A0M2V1C4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00314</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000037">
        <property type="protein sequence ID" value="KKO20956.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20956">
        <property type="protein sequence ID" value="KKO20956"/>
        <property type="gene ID" value="BROFUL_00314"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20956.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="29" mass="3482" checksum="10DE4F59642D3723" modified="2015-11-11" version="1" fragment="single">MAVEDATVAHRRFLQREVWGMFGQRITEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1Q6</accession>
    <name>A0A0M2V1Q6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00192</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000021">
        <property type="protein sequence ID" value="KKO21081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21081">
        <property type="protein sequence ID" value="KKO21081"/>
        <property type="gene ID" value="BROFUL_00192"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010686">
        <property type="entry name" value="OBAP-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31360">
        <property type="entry name" value="PTHR31360"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06884">
        <property type="entry name" value="DUF1264"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="251" mass="28167" checksum="97397F375DF2E2B1" modified="2015-11-11" version="1">MLRCSCRTIVNTLAFVAGIAFLSLLFVPGKGAGAEKEEHGVENVNKLKYADPIKDIHLYLCAFHIAKDNPKFEIEAHHYCSMRNLSVKGSDIHQCVIYDSREAPARLLGIEYIISNEAYQTLPAEEKKYWHPHAYEIISGQLIVPDLADMGDKALGGFLTSWGKTFHTWPDPTTEIPMGEPLLMWSAGADGQISKGMIDKRDKQFGISSDELRERRKSYGYQVPKVAVPKSIDEIGRQWTSKGSDKPEKLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1W7</accession>
    <name>A0A0M2V1W7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Chromosome partitioning protein ParA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">parA_1</name>
        <name evidence="2" type="ORF">BROFUL_00167</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000017">
        <property type="protein sequence ID" value="KKO21121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21121">
        <property type="protein sequence ID" value="KKO21121"/>
        <property type="gene ID" value="BROFUL_00167"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.206"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025669">
        <property type="entry name" value="AAA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13614">
        <property type="entry name" value="AAA_31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_31" evidence="1">
        <location>
            <begin position="4"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="263" mass="29009" checksum="34A20AA15442F1C5" modified="2015-11-11" version="1">MYGMRSIALLNQKGGVGKTTTTANLGACLSILGKKVLTIDMDPQANLSVHLGVDIHNLKHSVYHLIMGECKPEEVIVHTKVPGLDIIPSNIELSGAEIELVGIVGRETVLKEYLGDVLDQYDYVLVDCPPSLGLLTLNVLTFVRELFIPLQTEFFALQGVSKLLDTFEVVRKRLNNHLEITGIIFCMYTSRARLCNEVIEKVKEYPPLGDKAFNTIIRKNVKLSESPSHGKPIIAYAPGSHGSEDYLALAKEVLQQENGKKVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1X1</accession>
    <name>A0A0M2V1X1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00127</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000016">
        <property type="protein sequence ID" value="KKO21126.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21126">
        <property type="protein sequence ID" value="KKO21126"/>
        <property type="gene ID" value="BROFUL_00127"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21126.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="55" mass="6556" checksum="F74B2C677AAF6AA7" modified="2015-11-11" version="1">MDILKQVAELKEFLGKIYCFIEDNEDSFKDGVEAEDIKSETWRWMQELAKFLPEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1Z8</accession>
    <name>A0A0M2V1Z8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Probable nicotinate-nucleotide adenylyltransferase</fullName>
            <ecNumber evidence="6">2.7.7.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Deamido-NAD(+) diphosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Deamido-NAD(+) pyrophosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Nicotinate mononucleotide adenylyltransferase</fullName>
            <shortName evidence="6">NaMN adenylyltransferase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">nadD</name>
        <name evidence="8" type="ORF">BROFUL_00555</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 6">Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>ATP + H(+) + nicotinate beta-D-ribonucleotide = deamido-NAD(+) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:22860"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57502"/>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
            <dbReference type="EC" id="2.7.7.18"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 6">Cofactor biosynthesis; NAD(+) biosynthesis; deamido-NAD(+) from nicotinate D-ribonucleotide: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the NadD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.18" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000077">
        <property type="protein sequence ID" value="KKO20719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20719">
        <property type="protein sequence ID" value="KKO20719"/>
        <property type="gene ID" value="BROFUL_00555"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.696"/>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00332"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004515">
        <property type="term" value="F:nicotinate-nucleotide adenylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02165">
        <property type="entry name" value="NMNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00244">
        <property type="entry name" value="NaMN_adenylyltr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004821">
        <property type="entry name" value="Cyt_trans-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005248">
        <property type="entry name" value="NadD/NMNAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01467">
        <property type="entry name" value="CTP_transf_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00125">
        <property type="entry name" value="cyt_tran_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00482">
        <property type="entry name" value="TIGR00482"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 6" id="KW-0520">NAD</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="4 6" id="KW-0662">Pyridine nucleotide biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="CTP_transf_like" evidence="7">
        <location>
            <begin position="5"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001785"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="214" mass="24642" checksum="D234BDEC170B7595" modified="2015-11-11" version="1">MDIGVFGGSFNPIHIGHLIVAEEVYQQRRLSKVIFVPTGISPHKEERNLLDSFHRYQMVKYAIKDNEHFEVSDLEIKRAGKSYTIDTICALKDGYGKHHNLFLIMGTDMIIEISTWKDIDLLSRMCHFVVVNRFPMMPNGSNPSFPSQTSNLRCTEIFSPEKKAEIEQLKVTIPHIGISSTEIRERLQNGRSIRYLVPRCVEEYIRASNIYVKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V262</accession>
    <name>A0A0M2V262_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00465</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000061">
        <property type="protein sequence ID" value="KKO20809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20809">
        <property type="protein sequence ID" value="KKO20809"/>
        <property type="gene ID" value="BROFUL_00465"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.580"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glycos_transf_1" evidence="1">
        <location>
            <begin position="209"/>
            <end position="376"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="407" mass="45557" checksum="11DCC7B44AC020E8" modified="2015-11-11" version="1">MPKITEYEPIVGPNTIEELRLLAGKLQGKIIQNVNSTAVGGGVAEILNHMVPLLQELGVDARWDFIKGGESFFNATKKFHNALHGKPEEITPHMFETFMETSQRNIDEVKMYGDVMLIHDPQPIALVKKKDSMPGSKWIWRCHIDVSTPNKQVWDFLASFIHQYDGAVFSAPGFSQPLPIRQFLISPSIDPLSDKNKDLPQEAIDAVLEKYHITNDKPIITQVSRFDYLKDPIGVIEAYRLVKKRINCQLIIAGGTATDDPESTRVFGETREAAGNDPDIHILPVPSGSDLEINALQRASTVIVQKSLREGFGLTVTEALWKAKPIVASSTGGIPLQVKHKYSGLLCHSISGAAFAIKQLLNSPEYAKRLGENGREHVRQNFLLTRHLKDYMLLFLSMYHPEDIIYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2J1</accession>
    <name>A0A0M2V2J1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00357</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000044">
        <property type="protein sequence ID" value="KKO20924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20924">
        <property type="protein sequence ID" value="KKO20924"/>
        <property type="gene ID" value="BROFUL_00357"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="105" mass="12087" checksum="69E29F1F5473DB0F" modified="2015-11-11" version="1">MLNNKNEAKKKEGSFDPGCITDLQDKLLSHHYALRAFAVLLQDSDLTDFATQYPTPGCEERNYEAEALRLGLSQIIELYLEHQERIIEKHVEQYEEFAGKVKEDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2K3</accession>
    <name>A0A0M2V2K3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00336</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000042">
        <property type="protein sequence ID" value="KKO20934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20934">
        <property type="protein sequence ID" value="KKO20934"/>
        <property type="gene ID" value="BROFUL_00336"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.413"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032568">
        <property type="entry name" value="DUF4926"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16277">
        <property type="entry name" value="DUF4926"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="83" mass="9138" checksum="71865B39DE998211" modified="2015-11-11" version="1">MAYKLFEEVVLLKDIPEKRLKRGDVATIVEHHPVSKGEDGYSLEVFNALGDTIAVIIVPESAIEPLTENEIFSIRSLTAGGKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPZ0</accession>
    <name>A0A0M2UPZ0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03161</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000290">
        <property type="protein sequence ID" value="KKO18153.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18153">
        <property type="protein sequence ID" value="KKO18153"/>
        <property type="gene ID" value="BROFUL_03161"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008309">
        <property type="entry name" value="UCP025560"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07027">
        <property type="entry name" value="DUF1318"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005643910" evidence="1">
        <location>
            <begin position="27"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18153.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="126" mass="14246" checksum="C2C6E676BD7EB5E3" modified="2015-11-11" version="1">MKTKRSMSFFIITVIGIILASAPSRAQDINAIKVQMEKRLPHIVELKSKGIVGEDKMGYLQFVGGKRENDDVVQAENQDRKKVYEAIAQKEGATVEQVGQRRALQIAAKAKKGEWLQDQNGKWYQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ87</accession>
    <name>A0A0M2UQ87_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 2">Biotin carboxyl carrier protein of acetyl-CoA carboxylase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03270</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Lipid metabolism; fatty acid biosynthesis.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000299">
        <property type="protein sequence ID" value="KKO18047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18047">
        <property type="protein sequence ID" value="KKO18047"/>
        <property type="gene ID" value="BROFUL_03270"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4031"/>
    <dbReference type="UniPathway" id="UPA00094"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009317">
        <property type="term" value="C:acetyl-CoA carboxylase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003989">
        <property type="term" value="F:acetyl-CoA carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001249">
        <property type="entry name" value="AcCoA_biotinCC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00364">
        <property type="entry name" value="Biotin_lipoyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01071">
        <property type="entry name" value="ACOABIOTINCC"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00531">
        <property type="entry name" value="BCCP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0092">Biotin</keyword>
    <keyword evidence="2" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="2" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="2" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="2" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lipoyl-binding" evidence="3">
        <location>
            <begin position="74"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00017562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU364072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="154" mass="16994" checksum="F60B9093CB2EA3C3" modified="2015-11-11" version="1">MSIIDKVKQLISIMNENELSEIEIQEDVTKIRLKKSDAGYTHTVASAVAVPPLYTSSLEQRHQVPVLSKEGENTKEIISPMVGTFYRANAPGAEPCANVGDVVNEETVVCIIEAMKIMNEVKAEMVGEIVDIYVNDGEAVEFGQPLFRVRRSAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQD0</accession>
    <name>A0A0M2UQD0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Primosomal protein N'</fullName>
            <ecNumber evidence="9">3.6.4.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">ATP-dependent helicase PriA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">priA</name>
        <name evidence="13" type="ORF">BROFUL_03025</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Component of the primosome.</text>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the helicase family. PriA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.-" evidence="9"/>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18298">
        <property type="protein sequence ID" value="KKO18298"/>
        <property type="gene ID" value="BROFUL_03025"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3733"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990077">
        <property type="term" value="C:primosome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006269">
        <property type="term" value="P:DNA replication, synthesis of RNA primer"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006268">
        <property type="term" value="P:DNA unwinding involved in DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1440.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00983">
        <property type="entry name" value="PriA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005259">
        <property type="entry name" value="PriA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041222">
        <property type="entry name" value="PriA_3primeBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042115">
        <property type="entry name" value="PriA_3primeBD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041236">
        <property type="entry name" value="PriA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040498">
        <property type="entry name" value="PriA_CRR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17764">
        <property type="entry name" value="PriA_3primeBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18074">
        <property type="entry name" value="PriA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18319">
        <property type="entry name" value="PriA_CRR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00595">
        <property type="entry name" value="priA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 9" id="KW-0235">DNA replication</keyword>
    <keyword evidence="8 9" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6 9" id="KW-0347">Helicase</keyword>
    <keyword evidence="5 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1 9" id="KW-0639">Primosome</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <keyword evidence="9" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="11">
        <location>
            <begin position="249"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="12">
        <location>
            <begin position="501"/>
            <end position="696"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="C4-type" evidence="9">
        <location>
            <begin position="477"/>
            <end position="489"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="C4-type" evidence="9">
        <location>
            <begin position="504"/>
            <end position="520"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO18298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="772" mass="87540" checksum="0B847EDCC6A79D70" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQH1</accession>
    <name>A0A0M2UQH1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">TonB-dependent receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_03166</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the TonB-dependent receptor family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="SMR" id="A0A0M2UQH1"/>
    <dbReference type="EnsemblBacteria" id="KKO18117">
        <property type="protein sequence ID" value="KKO18117"/>
        <property type="gene ID" value="BROFUL_03166"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039426">
        <property type="entry name" value="BtuB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012910">
        <property type="entry name" value="Plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037066">
        <property type="entry name" value="Plug_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30069">
        <property type="entry name" value="PTHR30069"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07715">
        <property type="entry name" value="Plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="2 4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0675">Receptor</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0798">TonB box</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="30"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="domain" description="Plug" evidence="7">
        <location>
            <begin position="119"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="domain" description="TonB_dep_Rec" evidence="6">
        <location>
            <begin position="310"/>
            <end position="679"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="689"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF07715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="689" mass="77468" checksum="7DC08003E41E68BA" modified="2015-11-11" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQH3</accession>
    <name>A0A0M2UQH3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02947</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000278">
        <property type="protein sequence ID" value="KKO18348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18348">
        <property type="protein sequence ID" value="KKO18348"/>
        <property type="gene ID" value="BROFUL_02947"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="151" mass="17834" checksum="2DBD37665EDAF1B0" modified="2015-11-11" version="1">MGKKIRIFDYPQFAQGLRDELIAHAKKIASENNLSIQYLPKKNFRQEECIAEVLKRHGTHPGLVHIFSVQESCASYTPWHDKNTHKTFLKYDPSGRCLHYYFYFIHEILGLCYVRVPTWIPFRLQVYFNGHNWLGEQKGSPRNRKGSNLYC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQM9</accession>
    <name>A0A0M2UQM9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03121</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000287">
        <property type="protein sequence ID" value="KKO18172.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18172">
        <property type="protein sequence ID" value="KKO18172"/>
        <property type="gene ID" value="BROFUL_03121"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.210">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038071">
        <property type="entry name" value="UROD/MetE-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51726">
        <property type="entry name" value="SSF51726"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18172.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="348" mass="38769" checksum="414E4F74FCF91EB0" modified="2015-11-11" version="1">MLTNFKGNFSATAIGSLPHTNIETACELMFKSLPEIPCWPQLPKISAKEEMCIQYTEGLPCLKIHGDGKTVSIEISGDSSGALAGFYEDYLKNDPRLFHISPGCAAGFYAMIDRLNKSPQNSFRALKGQVVGPITLAGSLKLSTGITALYNEEFFDAVIKLMSMKAYWQFTKLSRYGLPVIIFADEPYLTSFGSAFMNISRERAIRALNEVYETIQSHGGLTGTHCCGNTDWAMLMDSKVDIISFDAYEFMDKYLMFWREIQAFLDRGGYMAWGIVPTSHKINTTSLNDLAKRLEEGIQFLVRKGISRTLIQERSIITPSCGTGTLTIEEAERVMMLTHAVSLSMKNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQV8</accession>
    <name>A0A0M2UQV8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02830</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000266">
        <property type="protein sequence ID" value="KKO18473.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18473">
        <property type="protein sequence ID" value="KKO18473"/>
        <property type="gene ID" value="BROFUL_02830"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18473.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="76" mass="8736" checksum="C586533A0FBFB609" modified="2015-11-11" version="1">MDNIKLIKYHLFKSKTALEISPEIYEALQSITAKNPRLSVDLLVDIALDYISNLKEEDLLKLITDYYGRKHTAPSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR42</accession>
    <name>A0A0M2UR42_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02973</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the HepT RNase toxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000280">
        <property type="protein sequence ID" value="KKO18337.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18337">
        <property type="protein sequence ID" value="KKO18337"/>
        <property type="gene ID" value="BROFUL_02973"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3677"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0110001">
        <property type="term" value="C:toxin-antitoxin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008201">
        <property type="entry name" value="HepT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037038">
        <property type="entry name" value="HepT-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01934">
        <property type="entry name" value="DUF86"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-1277">Toxin-antitoxin system</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00024207"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18337.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="129" mass="14435" checksum="F53B77BED4B46D9A" modified="2015-11-11" version="1">MPDKNLVLSILQQIDESLEKIKGRAVQIYSADDFTNSPSGMEKLDSICMQFIAVGEALKKIDKITGGGLLSKYPEIDWKGVMGFRDIIAHHYFDIDAEEIFWICAHELSPLSAAIKSMIKEMMQGGLRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR75</accession>
    <name>A0A0M2UR75_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Chromosome partition protein Smc</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">smc</name>
        <name evidence="5" type="ORF">BROFUL_02936</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Required for chromosome condensation and partitioning.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="3">Contains large globular domains required for ATP hydrolysis at each terminus and a third globular domain forming a flexible hinge near the middle of the molecule. These domains are separated by coiled-coil structures.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the SMC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000276">
        <property type="protein sequence ID" value="KKO18372.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18372">
        <property type="protein sequence ID" value="KKO18372"/>
        <property type="gene ID" value="BROFUL_02936"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3634"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030261">
        <property type="term" value="P:chromosome condensation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007062">
        <property type="term" value="P:sister chromatid cohesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01894">
        <property type="entry name" value="Smc_prok"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003395">
        <property type="entry name" value="RecF/RecN/SMC_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024704">
        <property type="entry name" value="SMC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010935">
        <property type="entry name" value="SMC_hinge"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036277">
        <property type="entry name" value="SMC_hinge_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011890">
        <property type="entry name" value="SMC_prok"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06470">
        <property type="entry name" value="SMC_hinge"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02463">
        <property type="entry name" value="SMC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005719">
        <property type="entry name" value="SMC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00968">
        <property type="entry name" value="SMC_hinge"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75553">
        <property type="entry name" value="SSF75553"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02168">
        <property type="entry name" value="SMC_prok_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1 3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SMC hinge" evidence="4">
        <location>
            <begin position="552"/>
            <end position="668"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="194"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="310"/>
            <end position="379"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="422"/>
            <end position="512"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="708"/>
            <end position="973"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="1052"/>
            <end position="1079"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="59"/>
            <end position="66"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18372.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1234" mass="140195" checksum="3C0F1E4A63D087E4" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URI5</accession>
    <name>A0A0M2URI5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two-component sensor kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02801</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000265">
        <property type="protein sequence ID" value="KKO18477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18477">
        <property type="protein sequence ID" value="KKO18477"/>
        <property type="gene ID" value="BROFUL_02801"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3463"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019825">
        <property type="term" value="F:oxygen binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01068">
        <property type="entry name" value="globin_sensor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.490.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009050">
        <property type="entry name" value="Globin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044398">
        <property type="entry name" value="Globin-sensor_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012292">
        <property type="entry name" value="Globin/Proto"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039379">
        <property type="entry name" value="Protoglobin_sensor_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11563">
        <property type="entry name" value="Protoglobin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46458">
        <property type="entry name" value="SSF46458"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="1 2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Histidine kinase" evidence="3">
        <location>
            <begin position="200"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="442"/>
            <end position="555"/>
        </location>
    </feature>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="566"/>
            <end position="682"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="491"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="615"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="686" mass="77480" checksum="327BFC993BF70661" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URU2</accession>
    <name>A0A0M2URU2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative septum formation initiator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02959</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000278">
        <property type="protein sequence ID" value="KKO18360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18360">
        <property type="protein sequence ID" value="KKO18360"/>
        <property type="gene ID" value="BROFUL_02959"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007060">
        <property type="entry name" value="FtsL/DivIC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04977">
        <property type="entry name" value="DivIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="41"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="149"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="66"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18360.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="187" mass="22118" checksum="89321C73BC9402A6" modified="2015-11-11" version="1">MQDVTIDRYDGEKKSFPLLKEPSLSEEKSRYADGNPYFRKFVLIVFITASIVIFFSWVISKTRQERIRMLETKTALEEQAARLEAENSRLENEYAALKKDPLRIEKEARELLGYTGDGEIVYEKYRFRIKSAAEKEPEVIASRNRWKVFLFDGAFPWQLPAFIILVATAYYLLSYHYEYRKLRKSNC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URV5</accession>
    <name>A0A0M2URV5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4">N5-carboxyaminoimidazole ribonucleotide mutase</fullName>
            <shortName evidence="3 4">N5-CAIR mutase</shortName>
            <ecNumber evidence="3 4">5.4.99.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">5-(carboxyamino)imidazole ribonucleotide mutase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">purE</name>
        <name evidence="7" type="ORF">BROFUL_02464</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 4">Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 4">
            <text>5-carboxyamino-1-(5-phospho-D-ribosyl)imidazole + H(+) = 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate</text>
            <dbReference type="Rhea" id="RHEA:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58730"/>
            <dbReference type="ChEBI" id="CHEBI:77657"/>
            <dbReference type="EC" id="5.4.99.18"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 4">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate from 5-amino-1-(5-phospho-D-ribosyl)imidazole (N5-CAIR route): step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the AIR carboxylase family. Class I subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.18" evidence="3 4"/>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18803">
        <property type="protein sequence ID" value="KKO18803"/>
        <property type="gene ID" value="BROFUL_02464"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3061"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00943"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034023">
        <property type="term" value="F:5-(carboxyamino)imidazole ribonucleotide mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01929">
        <property type="entry name" value="PurE_classI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033747">
        <property type="entry name" value="PurE_ClassI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000031">
        <property type="entry name" value="PurE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024694">
        <property type="entry name" value="PurE_prokaryotes"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00731">
        <property type="entry name" value="AIRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001338">
        <property type="entry name" value="AIR_carboxylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01001">
        <property type="entry name" value="AIRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01162">
        <property type="entry name" value="purE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="1 3 4" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AIRC" evidence="6">
        <location>
            <begin position="4"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3 5">
        <location>
            <position position="12"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3 5">
        <location>
            <position position="15"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3 5">
        <location>
            <position position="42"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR001338"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR001338-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM01001"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="167" mass="17360" checksum="8A2D050A61DA25CF" modified="2015-11-11" version="1">MTGKNIGIVMGSDSDLATMKEAINVLREFGVGFDVNVISAHRSPERAHSYATDAEKKYDVIIAGAGGAAHLAGVIASLTPIPVIGVPMLTPELGGLDSLLSMVQMPSGVPVPTMGTGKSGAVNAALLAIQILSVSDPMLRQKLAVYKKKMADEVAKKDTAVRTEFGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URW1</accession>
    <name>A0A0M2URW1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02469</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18808">
        <property type="protein sequence ID" value="KKO18808"/>
        <property type="gene ID" value="BROFUL_02469"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071586">
        <property type="term" value="P:CAAX-box protein processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003675">
        <property type="entry name" value="Rce1-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02517">
        <property type="entry name" value="Rce1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="51"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="100"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="140"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="178"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="217"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="249" mass="28237" checksum="D87EF96FF2CAC958" modified="2015-11-11" version="1">MVLDCRWNLKDAAKVFLVYVVLMFFGMPVMVRLMNTLFGFHALNSIGQRNLILFLSLCINALICSYVFYVVCIEYRQSVTALGLSGVNLSENIKQGVKRYAVTLPLIILAGFVINLISSYYGQIPEMQDVVQWVLEEKSLFVLGSLIFFGIVIAPVMEEIMFRGFLQPALKNSFGGRYAVAITAFLFAAVHMDIFAFLQIFILGMLLGYLYERTQTLVASTIVHILHNSLTLVFLLYFKYFLKGKIPVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US26</accession>
    <name>A0A0M2US26_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Elongation factor P</fullName>
            <shortName evidence="7">EF-P</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">efp</name>
        <name evidence="11" type="ORF">BROFUL_02424</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Protein biosynthesis; polypeptide chain elongation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 7 8">Belongs to the elongation factor P family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000231">
        <property type="protein sequence ID" value="KKO18878.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18878">
        <property type="protein sequence ID" value="KKO18878"/>
        <property type="gene ID" value="BROFUL_02424"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3013"/>
    <dbReference type="UniPathway" id="UPA00345"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04470">
        <property type="entry name" value="S1_EF-P_repeat_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd05794">
        <property type="entry name" value="S1_EF-P_repeat_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00141">
        <property type="entry name" value="EF_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015365">
        <property type="entry name" value="Elong-fact-P_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014722">
        <property type="entry name" value="Rib_L2_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020599">
        <property type="entry name" value="Transl_elong_fac_P/YeiP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013185">
        <property type="entry name" value="Transl_elong_KOW-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001059">
        <property type="entry name" value="Transl_elong_P/YeiP_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013852">
        <property type="entry name" value="Transl_elong_P/YeiP_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011768">
        <property type="entry name" value="Transl_elongation_fac_P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30053">
        <property type="entry name" value="PTHR30053"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01132">
        <property type="entry name" value="EFP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08207">
        <property type="entry name" value="EFP_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09285">
        <property type="entry name" value="Elong-fact-P_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005901">
        <property type="entry name" value="EF-P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01185">
        <property type="entry name" value="EFP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00841">
        <property type="entry name" value="Elong-fact-P_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="SSF50104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00038">
        <property type="entry name" value="efp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01275">
        <property type="entry name" value="EFP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 7 11" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="6 7" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="EFP" evidence="10">
        <location>
            <begin position="61"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="domain" description="Elong-fact-P_C" evidence="9">
        <location>
            <begin position="123"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00841"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM01185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO18878.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="179" mass="20363" checksum="82640D68376F9240" modified="2015-11-11" version="1">MKRGTVIKMDGELYLVVDYQHVTPGNWRGMVQAKLKSLKQGSVVQKRFRSTDKIEDVFLDHRVMEYLYKDGDNYCFMDTENYEQILLPKEAVEDAMPYMTLNSQAKIAFYEGKAISVELPTSVVLKIVETDPGMKGDTVVNVYKPAKLETGLVVKVPLFINNGEIIKVDTRTGEFLGRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USA8</accession>
    <name>A0A0M2USA8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8">6-carboxy-5,6,7,8-tetrahydropterin synthase</fullName>
            <ecNumber evidence="8">4.-.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_02795</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>7,8-dihydroneopterin 3'-triphosphate + H2O = 6-carboxy-5,6,7,8-tetrahydropterin + acetaldehyde + 2 H(+) + triphosphate</text>
            <dbReference type="Rhea" id="RHEA:27966"/>
            <dbReference type="ChEBI" id="CHEBI:15343"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:18036"/>
            <dbReference type="ChEBI" id="CHEBI:58462"/>
            <dbReference type="ChEBI" id="CHEBI:61032"/>
            <dbReference type="EC" id="4.1.2.50"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8 10">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="8 10">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Purine metabolism; 7-cyano-7-deazaguanine biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the PTPS family. QueD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.-.-.-" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000264">
        <property type="protein sequence ID" value="KKO18525.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18525">
        <property type="protein sequence ID" value="KKO18525"/>
        <property type="gene ID" value="BROFUL_02795"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00391"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070497">
        <property type="term" value="F:6-carboxy-5,6,7,8-tetrahydropterin synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008616">
        <property type="term" value="P:queuosine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007115">
        <property type="entry name" value="6-PTP_synth/QueD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038418">
        <property type="entry name" value="6-PTP_synth/QueD_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12589">
        <property type="entry name" value="PTHR12589"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01242">
        <property type="entry name" value="PTPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006113">
        <property type="entry name" value="PTP_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03367">
        <property type="entry name" value="queuosine_QueD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0456">Lyase</keyword>
    <keyword evidence="5 8 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0671">Queuosine biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8 10" id="KW-0862">Zinc</keyword>
    <feature type="active site" description="Proton acceptor" evidence="9">
        <location>
            <position position="23"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="9">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="9">
        <location>
            <position position="111"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="14"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="27"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="29"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001293"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00018141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRNR" id="PIRNR006113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR006113-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR006113-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO18525.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="121" mass="14135" checksum="9B06CE142100D18D" modified="2015-11-11" version="1">MFELIIETDFSAAHNLREYKGQCERLHGHNWKVQVILKAEKLDTLGMVMDFRDAKRVVGEIINRFDHIYLNELADFAEVNPTTENLSKILYEELRRELPAGVKVEKVTTWESDRCGASYFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USC6</accession>
    <name>A0A0M2USC6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02763</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000260">
        <property type="protein sequence ID" value="KKO18540.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18540">
        <property type="protein sequence ID" value="KKO18540"/>
        <property type="gene ID" value="BROFUL_02763"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026350">
        <property type="entry name" value="GxxExxY"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13366">
        <property type="entry name" value="PDDEXK_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04256">
        <property type="entry name" value="GxxExxY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18540.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="160" mass="18101" checksum="659013390B694E4A" modified="2015-11-11" version="1">MNPRITQMDADKKDSETYLIIGAAMAVHRELGNGFLEAVYQEALEKEFSRQGISYVREQELKICYRGQELKTCYKADFVCFGNIIVELKALQQLSGNEESQIINYLKASGLNKGLLLNFGTRQLQYKRFVFNLRESASSADGGKGMSPQMTQILADKRTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USI9</accession>
    <name>A0A0M2USI9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Elongation factor G</fullName>
            <shortName evidence="6">EF-G</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">fusA</name>
        <name evidence="8" type="ORF">BROFUL_02271</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000224">
        <property type="protein sequence ID" value="KKO19028.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19028">
        <property type="protein sequence ID" value="KKO19028"/>
        <property type="gene ID" value="BROFUL_02271"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2833"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16262">
        <property type="entry name" value="EFG_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01434">
        <property type="entry name" value="EFG_mtEFG1_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03713">
        <property type="entry name" value="EFG_mtEFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00054_B">
        <property type="entry name" value="EF_G_EF_2_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041095">
        <property type="entry name" value="EFG_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009022">
        <property type="entry name" value="EFG_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035647">
        <property type="entry name" value="EFG_III/V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035649">
        <property type="entry name" value="EFG_V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000640">
        <property type="entry name" value="EFG_V-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004161">
        <property type="entry name" value="EFTu-like_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031157">
        <property type="entry name" value="G_TR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004540">
        <property type="entry name" value="Transl_elong_EFG/EF2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005517">
        <property type="entry name" value="Transl_elong_EFG/EF2_IV"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00679">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14492">
        <property type="entry name" value="EFG_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03764">
        <property type="entry name" value="EFG_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03144">
        <property type="entry name" value="GTP_EFTU_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00838">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00889">
        <property type="entry name" value="EFG_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54980">
        <property type="entry name" value="SSF54980"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00484">
        <property type="entry name" value="EF-G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00301">
        <property type="entry name" value="G_TR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 6 8" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="5 6" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 6" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="7">
        <location>
            <begin position="4"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="13"/>
            <end position="20"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="77"/>
            <end position="81"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="131"/>
            <end position="134"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19028.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="684" mass="75606" checksum="9443D0C77D5F6053" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USJ2</accession>
    <name>A0A0M2USJ2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02468</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0047 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18807.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18807">
        <property type="protein sequence ID" value="KKO18807"/>
        <property type="gene ID" value="BROFUL_02468"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3067"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.460">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001602">
        <property type="entry name" value="UPF0047"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035917">
        <property type="entry name" value="YjbQ-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30615">
        <property type="entry name" value="PTHR30615"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01894">
        <property type="entry name" value="UPF0047"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004681">
        <property type="entry name" value="UCP004681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111038">
        <property type="entry name" value="SSF111038"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00149">
        <property type="entry name" value="TIGR00149_YjbQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01314">
        <property type="entry name" value="UPF0047"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18807.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="132" mass="14740" checksum="86726BBE04460CDC" modified="2015-11-11" version="1">MEKIQVTTHARAELIDITREVEKLLVKQTMKEGICYLYVPHTTAAITINENADPSVREDILHDLSRLIPWNGSYTHGEGNAAAHIKSTLVGSSVSVPVSSGKLALGTWQGIYFCEFDGPRRREVFVQIMKNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USQ6</accession>
    <name>A0A0M2USQ6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03277</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000300">
        <property type="protein sequence ID" value="KKO18031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18031">
        <property type="protein sequence ID" value="KKO18031"/>
        <property type="gene ID" value="BROFUL_03277"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="60" mass="6555" checksum="41C2A2DE28AD70E1" modified="2015-11-11" version="1" fragment="single">MRAMFSILCRGMVSNLPLRDNSIPSAAQPQPNFLYESGEIASENALAMTATMHFDGTLHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USR1</accession>
    <name>A0A0M2USR1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02428</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000231">
        <property type="protein sequence ID" value="KKO18882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18882">
        <property type="protein sequence ID" value="KKO18882"/>
        <property type="gene ID" value="BROFUL_02428"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007462">
        <property type="entry name" value="COV1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31876">
        <property type="entry name" value="PTHR31876"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04367">
        <property type="entry name" value="DUF502"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="71"/>
            <end position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="229" mass="25781" checksum="608DBBED6B86014D" modified="2015-11-11" version="1">MKEKEQGVFSHFRKDVRKRMLTGLLLILPVYVTFFVVKFLFSFVGGTLAPVVKRVLQFLGVALPKTSLDEFIITFFGLILTFIALYFLGIFATNIVGKFIIHYFENLLTRTPVVRNIYSSAKQIIHAVTLPGKQAFKRVVFIDFPKEGTKSIGFVTGATQYNQDRKFISVFIPTTPNPTTGFLIYTTEDAVIDTTLTVEEAFKTLFSGGVLTPKDITTPLTVERTQTSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USZ6</accession>
    <name>A0A0M2USZ6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02365</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18972.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18972">
        <property type="protein sequence ID" value="KKO18972"/>
        <property type="gene ID" value="BROFUL_02365"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18972.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="39" mass="4530" checksum="7DE9D832B13C9F22" modified="2015-11-11" version="1">MGLNVPHDIKMKIKVVSIMYLVYYSWFLSKSSLKLSVPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT25</accession>
    <name>A0A0M2UT25_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02086</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000209">
        <property type="protein sequence ID" value="KKO19208.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19208">
        <property type="protein sequence ID" value="KKO19208"/>
        <property type="gene ID" value="BROFUL_02086"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19208.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="30" mass="3395" checksum="C4413063B09ED10E" modified="2015-11-11" version="1">MTKREMDVEGRNILECAFAPPIGKEDGEEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTC2</accession>
    <name>A0A0M2UTC2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Prephenate dehydratase</fullName>
            <ecNumber evidence="3">4.2.1.51</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_02201</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H(+) + prephenate = 3-phenylpyruvate + CO2 + H2O</text>
            <dbReference type="Rhea" id="RHEA:21648"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:18005"/>
            <dbReference type="ChEBI" id="CHEBI:29934"/>
            <dbReference type="EC" id="4.2.1.51"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-phenylalanine biosynthesis; phenylpyruvate from prephenate: step 1/1.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.51" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000220">
        <property type="protein sequence ID" value="KKO19087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19087">
        <property type="protein sequence ID" value="KKO19087"/>
        <property type="gene ID" value="BROFUL_02201"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00121">
        <property type="reaction ID" value="UER00345"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004664">
        <property type="term" value="F:prephenate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009094">
        <property type="term" value="P:L-phenylalanine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001086">
        <property type="entry name" value="Preph_deHydtase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00800">
        <property type="entry name" value="PDT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="5" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-0584">Phenylalanine biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Prephenate dehydratase" evidence="8">
        <location>
            <begin position="12"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013147"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023222"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00800"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="186" mass="20872" checksum="AE02A637CD85A29C" modified="2015-11-11" version="1">MERKFDQNIHKVGTLGPQGTSSEQAAIHFVQKTLRGKGTIVLKDTFEEVFTDLTEGTVDYAIVPVAYPGINQFYMTQYIEDILSYRFDTPVYELVTNKNDIVKTNQVTVALHPATKPLIPFLCEDYLAVSLVTATSTAVAAKLAKDCKVDLAITNEESRKRHQLTVLKPWGRIGMSWIVFGNKNFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTR5</accession>
    <name>A0A0M2UTR5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF58 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01837</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000190">
        <property type="protein sequence ID" value="KKO19458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19458">
        <property type="protein sequence ID" value="KKO19458"/>
        <property type="gene ID" value="BROFUL_01837"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2285"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002881">
        <property type="entry name" value="DUF58"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01882">
        <property type="entry name" value="DUF58"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF58" evidence="1">
        <location>
            <begin position="37"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19458.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="291" mass="33597" checksum="361F766E8B324DEC" modified="2015-11-11" version="1">MVTKDILKKIQQIEIHTRHLVNESFIGEYHSVFKGRGMEFDEVREYQPGDEIRTIDWNVTARMGRPFIKRYVEERELTVMLLVDVSASGNFGSVRQLKNEIAIEVCALLAFSAIRNNDKVGMIMFTDRIEKFIPPKKGAKHVLRVIRELLCAEPAGKGTNISVALEYMDKISTRRTISFLVSDFLASDYAHALRIANKRHDVIAITVIDPREQELPNVGFVELRDAESGEILLVDTANPLARKEFCALNARQRQERTRLFRSMGVDEIVISTDRHYVEPIVRFFRVREKRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTU1</accession>
    <name>A0A0M2UTU1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_01822</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000189">
        <property type="protein sequence ID" value="KKO19483.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19483">
        <property type="protein sequence ID" value="KKO19483"/>
        <property type="gene ID" value="BROFUL_01822"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2266"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001610">
        <property type="entry name" value="PAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013656">
        <property type="entry name" value="PAS_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013767">
        <property type="entry name" value="PAS_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01590">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13185">
        <property type="entry name" value="GAF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00989">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08448">
        <property type="entry name" value="PAS_4"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00065">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00086">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 11" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="6"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="190"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="10">
        <location>
            <begin position="215"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="8">
        <location>
            <begin position="498"/>
            <end position="568"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="9">
        <location>
            <begin position="554"/>
            <end position="619"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="8">
        <location>
            <begin position="620"/>
            <end position="689"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="9">
        <location>
            <begin position="691"/>
            <end position="743"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="8">
        <location>
            <begin position="744"/>
            <end position="801"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="8">
        <location>
            <begin position="1037"/>
            <end position="1115"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="9">
        <location>
            <begin position="1108"/>
            <end position="1161"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="7">
        <location>
            <begin position="1174"/>
            <end position="1395"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO19483.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1395" mass="158433" checksum="AB52F0895D39EA8D" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTU5</accession>
    <name>A0A0M2UTU5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Pirin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_03410</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the pirin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000312">
        <property type="protein sequence ID" value="KKO17899.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17899">
        <property type="protein sequence ID" value="KKO17899"/>
        <property type="gene ID" value="BROFUL_03410"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4187"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012093">
        <property type="entry name" value="Pirin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008778">
        <property type="entry name" value="Pirin_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003829">
        <property type="entry name" value="Pirin_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13903">
        <property type="entry name" value="PTHR13903"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02678">
        <property type="entry name" value="Pirin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05726">
        <property type="entry name" value="Pirin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006232">
        <property type="entry name" value="Pirin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pirin" evidence="3">
        <location>
            <begin position="22"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="Pirin_C" evidence="4">
        <location>
            <begin position="178"/>
            <end position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003457"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02678"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF05726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO17899.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="304" mass="34434" checksum="CB3E7557AF0F760D" modified="2015-11-11" version="1">MTETRKIRQVLKSKPAIEGAGVHLKRAFGRSQVPMFDPFLLLDDFRSDNPEDYIKGFPWHPHRGIETITYVLQGDVEHGDSMGNKGVISSGDIQWMTAGSGIIHQEMPKGDPKGVMLGFQLWANLPKVYKMMEPRYRDVKSGQIPEVMLDNGSKVRVICGKAGGQQGPVRDIITDPEYLDITVTARSEFVHPTKRGHTVFAYVIEGKGYFCKEKLPFSYEIEGVNYFDLQRDPFVSNETLVLFDDGDQMMVSTEDDAVRFLLISGKPLGEPVAWYGPIVMNTEDELRIAFDEYHNGTFIKHRRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTU6</accession>
    <name>A0A0M2UTU6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Bifunctional purine biosynthesis protein PurH</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="8">Phosphoribosylaminoimidazolecarboxamide formyltransferase</fullName>
                <ecNumber evidence="8">2.1.2.3</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="8">AICAR transformylase</fullName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="8">IMP cyclohydrolase</fullName>
                <ecNumber evidence="8">3.5.4.10</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="8">ATIC</fullName>
            </alternativeName>
            <alternativeName>
                <fullName evidence="8">IMP synthase</fullName>
            </alternativeName>
            <alternativeName>
                <fullName evidence="8">Inosinicase</fullName>
            </alternativeName>
        </domain>
    </protein>
    <gene>
        <name evidence="8" type="primary">purH</name>
        <name evidence="10" type="ORF">BROFUL_02037</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>(6S)-10-formyltetrahydrofolate + 5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide = (6S)-5,6,7,8-tetrahydrofolate + 5-formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide</text>
            <dbReference type="Rhea" id="RHEA:22192"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:57454"/>
            <dbReference type="ChEBI" id="CHEBI:58467"/>
            <dbReference type="ChEBI" id="CHEBI:58475"/>
            <dbReference type="EC" id="2.1.2.3"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>H2O + IMP = 5-formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide</text>
            <dbReference type="Rhea" id="RHEA:18445"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <dbReference type="ChEBI" id="CHEBI:58467"/>
            <dbReference type="EC" id="3.5.4.10"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Purine metabolism; IMP biosynthesis via de novo pathway; 5-formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide (10-formyl THF route): step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 8">Purine metabolism; IMP biosynthesis via de novo pathway; IMP from 5-formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide: step 1/1.</text>
    </comment>
    <comment type="domain">
        <text evidence="8">The IMP cyclohydrolase activity resides in the N-terminal region.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the PurH family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.3" evidence="8"/>
    <dbReference type="EC" id="3.5.4.10" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19237.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19237">
        <property type="protein sequence ID" value="KKO19237"/>
        <property type="gene ID" value="BROFUL_02037"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2540"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00133"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003937">
        <property type="term" value="F:IMP cyclohydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004643">
        <property type="term" value="F:phosphoribosylaminoimidazolecarboxamide formyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.140.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00139">
        <property type="entry name" value="PurH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024051">
        <property type="entry name" value="AICAR_Tfase_dup_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016193">
        <property type="entry name" value="Cytidine_deaminase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011607">
        <property type="entry name" value="MGS-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036914">
        <property type="entry name" value="MGS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002695">
        <property type="entry name" value="PurH-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11692">
        <property type="entry name" value="PTHR11692"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01808">
        <property type="entry name" value="AICARFT_IMPCHas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02142">
        <property type="entry name" value="MGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000414">
        <property type="entry name" value="AICARFT_IMPCHas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00798">
        <property type="entry name" value="AICARFT_IMPCHas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00851">
        <property type="entry name" value="MGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52335">
        <property type="entry name" value="SSF52335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53927">
        <property type="entry name" value="SSF53927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00355">
        <property type="entry name" value="purH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51855">
        <property type="entry name" value="MGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8 10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7 8" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="5 8" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="MGS-like" evidence="9">
        <location>
            <begin position="1"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004844"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007667"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19237.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="525" mass="57544" checksum="3992781BE880DE77" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTX3</accession>
    <name>A0A0M2UTX3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cell shape determining protein RodA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_03380</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17929.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17929">
        <property type="protein sequence ID" value="KKO17929"/>
        <property type="gene ID" value="BROFUL_03380"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4156"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018365">
        <property type="entry name" value="Cell_cycle_FtsW-rel_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001182">
        <property type="entry name" value="FtsW/RodA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011923">
        <property type="entry name" value="RodA/MrdB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30474">
        <property type="entry name" value="PTHR30474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30474:SF1">
        <property type="entry name" value="PTHR30474:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01098">
        <property type="entry name" value="FTSW_RODA_SPOVE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02210">
        <property type="entry name" value="rodA_shape"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00428">
        <property type="entry name" value="FTSW_RODA_SPOVE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0133">Cell shape</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="79"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="106"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="130"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="221"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="254"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="285"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO17929.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="323" mass="35814" checksum="12A19DEE16F55074" modified="2015-11-11" version="1">MGFTLFFTLLYLDYLLVANYAYVIYGVVLLLLILLLVFGGSVKGSQRWFSVGSFSIQPSEFMKITLVITLAQFLRYPKYGLGFVDIGISLLLTGIPMALIVKQPDLGTALVMMPILVAILYTAGIRLYQLVIFIGAGIAVSPLLWLFLLKPYQKLRIVGFLWPDKTADWGAGYHRLQSLIAIGSGGLWGAGWGNGTQNQMRFLPERHTDFIFAVIAEEWGFLRSCFVLLLYIVFLTCGIGIARRTREPCGRLIVVGLVTMFATQIIANICMTLGIAPIVGITLPFMSYGGSSMLTSFIALSLIFNVKMRSKIDLASRRFHGLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU15</accession>
    <name>A0A0M2UU15_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03341</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000306">
        <property type="protein sequence ID" value="KKO17969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17969">
        <property type="protein sequence ID" value="KKO17969"/>
        <property type="gene ID" value="BROFUL_03341"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="46" mass="5406" checksum="49FB7F198FC1E276" modified="2015-11-11" version="1">MVQSKHENEEPEITFQEHAKIVVDAVKTWFYTTGIRMMLLREKGIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU29</accession>
    <name>A0A0M2UU29_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Glutamate dehydrogenase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_03327</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2 6">Belongs to the Glu/Leu/Phe/Val dehydrogenases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000305">
        <property type="protein sequence ID" value="KKO17984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17984">
        <property type="protein sequence ID" value="KKO17984"/>
        <property type="gene ID" value="BROFUL_03327"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4098"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004353">
        <property type="term" value="F:glutamate dehydrogenase [NAD(P)+] activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006520">
        <property type="term" value="P:cellular amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01076">
        <property type="entry name" value="NAD_bind_1_Glu_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046346">
        <property type="entry name" value="Aminiacid_DH-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006095">
        <property type="entry name" value="Glu/Leu/Phe/Val_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006096">
        <property type="entry name" value="Glu/Leu/Phe/Val_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006097">
        <property type="entry name" value="Glu/Leu/Phe/Val_DH_dimer_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014362">
        <property type="entry name" value="Glu_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033922">
        <property type="entry name" value="NAD_bind_Glu_DH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00208">
        <property type="entry name" value="ELFV_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02812">
        <property type="entry name" value="ELFV_dehydrog_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000185">
        <property type="entry name" value="Glu_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00082">
        <property type="entry name" value="GLFDHDRGNASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00839">
        <property type="entry name" value="ELFV_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53223">
        <property type="entry name" value="SSF53223"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0520">NAD</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ELFV_dehydrog" evidence="7">
        <location>
            <begin position="183"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="3">
        <location>
            <position position="106"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="70"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="94"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="190"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="221"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="349"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Important for catalysis" evidence="5">
        <location>
            <position position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR000185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000185-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000185-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000185-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO17984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="428" mass="47320" checksum="352F1EA94D2DB6D7" modified="2015-11-11" version="1">MEKNDILFETALEQFDTVAEILQLEDEIRERMRFPKRSLIVSVPVRLDNGTVKVFRGYRVQHDITLGPSKGGIRYHPNVDLNEVSALAMLMTWKCALMHMPYGGAKGGVQCNPEEMSQNELERMTRRYTTEIVQIIGPDRDIPAPDLYTNSQTMAWMMDTYSVQQGNTVPGVVTGKPLLLGGSLGRAEGTGRGVAYMVIEAARVLYKELRGLRVAIQGMGNVGSVATRLLYDQGCNIVAVSDVSGGAYNPKGILVPYLMHHIKEHKHVVGLREADAITNEELFELDCDVIIPAAIEGQITETNADKVRAKIIVEGANGPTTPEADKILFDKKVFLVPDILANAGGVTVSYFEWVQDIQYYFWSEEDIQKKLKDVMVGTFNRVLALSNKQGVDLRTAALMLGIGRVADAKKLRGLYLNGIMDFHGSAAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUB3</accession>
    <name>A0A0M2UUB3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative molybdopterin biosynthesis protein MoeB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01884</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000194">
        <property type="protein sequence ID" value="KKO19422.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19422">
        <property type="protein sequence ID" value="KKO19422"/>
        <property type="gene ID" value="BROFUL_01884"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2350"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008641">
        <property type="term" value="F:ubiquitin-like modifier activating enzyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045886">
        <property type="entry name" value="ThiF/MoeB/HesA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000594">
        <property type="entry name" value="ThiF_NAD_FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035985">
        <property type="entry name" value="Ubiquitin-activating_enz"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10953">
        <property type="entry name" value="PTHR10953"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00899">
        <property type="entry name" value="ThiF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69572">
        <property type="entry name" value="SSF69572"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ThiF" evidence="1">
        <location>
            <begin position="5"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19422.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="341" mass="38092" checksum="DA4FFACB1CAA2BD2" modified="2015-11-11" version="1">MFDRYARQVLFYGIGKEGQKTLMEKTAVLVGCGALGCTSANLLVRSGIKRLRIIDRDYIEESNLQRQSLFDEEDIKKNLPKAIVAQKKLQTINSLTQTESLVTDLNPSNIETLLHDAHIVVDGTDNFETRFLINDYCVKNGIPWIYGACIGSMGLTMNIIPSKTPCFRCVLDTLPPFGTSETCDTEGIIAPIASLIASIQVTEALKILTNNYDALSKGLFKIDLWRNEIKRIHTEDIRDKTDCITCKQNHYEFLAKDRYSMTTSLCGRNAIQILHPNGANLDLAKLAARLEKTGEVSYNSFLLRLKTGKYEITVFPDGRSIISGTHDFGTAKGLYAKYIGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUI8</accession>
    <name>A0A0M2UUI8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">1-deoxy-D-xylulose 5-phosphate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03183</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18134.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18134">
        <property type="protein sequence ID" value="KKO18134"/>
        <property type="gene ID" value="BROFUL_03183"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3925"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008661">
        <property type="term" value="F:1-deoxy-D-xylulose-5-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02007">
        <property type="entry name" value="TPP_DXS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005477">
        <property type="entry name" value="Dxylulose-5-P_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005475">
        <property type="entry name" value="Transketolase-like_Pyr-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43322">
        <property type="entry name" value="PTHR43322"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13292">
        <property type="entry name" value="DXP_synthase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02779">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00861">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00204">
        <property type="entry name" value="dxs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transket_pyr" evidence="3">
        <location>
            <begin position="319"/>
            <end position="447"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00861"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18134.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="447" mass="48832" checksum="BCC1C7E79E1EF9B1" modified="2015-11-11" version="1">MSKLLDSVEYPEDLKKLNLTDLPKLATEIREFIVDVVSKNPGHLSSNLGVVELTIALHYCFDFKKDKIVWDVGHQAYVHKILTGRKSKFLTLRQYKGLSGFPDKNESDYDPFTCGHSGDAISAALGLSCADAIRGEKRSIVAVVGDGAIGAGMSLEALNHAGDLKKNVLVVLNDNEMSISNTVGAFSKYLNKIRTAPIYADVRKEVHGLLKVVPVLGKPVEKTLERIVELIQRGGIPGQIFKDLGLNYFGPIDGHDFRILIDTLNNIKHLGGPVLLHVITEKGRGFEPAYQNPAQYHSAGKFEMCNGKIKTSSHDSQKIAYTKVFGNTLVELAKTDPNVVGITAAMPDGTGIVSFGKKFPDRFYDVGICEQHAVGLANGLSAGGIKPVVAIYSTFLQRAYDQVFHDICLQKHGVSLRSTGRGLWEMTGRPITGFLTLPIFVICPRLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUQ7</accession>
    <name>A0A0M2UUQ7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Site-specific DNA-methyltransferase (adenine-specific)</fullName>
            <ecNumber evidence="2">2.1.1.72</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01927</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 2'-deoxyadenosine in DNA + S-adenosyl-L-methionine = an N(6)-methyl-2'-deoxyadenosine in DNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:15197"/>
            <dbReference type="Rhea" id="RHEA-COMP:12418"/>
            <dbReference type="Rhea" id="RHEA-COMP:12419"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:90615"/>
            <dbReference type="ChEBI" id="CHEBI:90616"/>
            <dbReference type="EC" id="2.1.1.72"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.72" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000197">
        <property type="protein sequence ID" value="KKO19355.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19355">
        <property type="protein sequence ID" value="KKO19355"/>
        <property type="gene ID" value="BROFUL_01927"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008170">
        <property type="term" value="F:N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009007">
        <property type="term" value="F:site-specific DNA-methyltransferase (adenine-specific) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.30">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022749">
        <property type="entry name" value="D12N6_MeTrfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003356">
        <property type="entry name" value="DNA_methylase_A-5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038333">
        <property type="entry name" value="T1MK-like_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12161">
        <property type="entry name" value="HsdM_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02384">
        <property type="entry name" value="N6_Mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HsdM_N" evidence="4">
        <location>
            <begin position="11"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="domain" description="N6_Mtase" evidence="3">
        <location>
            <begin position="138"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF12161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19355.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="187" mass="20528" checksum="C48F48E78327B819" modified="2015-11-11" version="1" fragment="single">MAIKKSELYGSLWASCDELRGGMDASQYKDYVLVLLFIKYISDKYTGVPYAPITVPKGASFQDMVALKGKPTIGDDINKKIIGKIAEANKLTGTIDVADFNSADKLGSGKEMVDRLSNLIAIFENPALDFSKNRAEGDDILGDAYEYLMRHFATESGKSKGQFYTPAEVSRIMAKIITFNSKITPST</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUR8</accession>
    <name>A0A0M2UUR8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="13">NADH dehydrogenase I subunit G</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BROFUL_03075</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000285">
        <property type="protein sequence ID" value="KKO18229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18229">
        <property type="protein sequence ID" value="KKO18229"/>
        <property type="gene ID" value="BROFUL_03075"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043546">
        <property type="term" value="F:molybdopterin cofactor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042773">
        <property type="term" value="P:ATP synthesis coupled electron transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006657">
        <property type="entry name" value="MoPterin_dinucl-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006656">
        <property type="entry name" value="Mopterin_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006963">
        <property type="entry name" value="Mopterin_OxRdtase_4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000283">
        <property type="entry name" value="NADH_UbQ_OxRdtase_75kDa_su_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019574">
        <property type="entry name" value="NADH_UbQ_OxRdtase_Gsu_4Fe4S-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12838">
        <property type="entry name" value="Fer4_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04879">
        <property type="entry name" value="Molybdop_Fe4S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00384">
        <property type="entry name" value="Molybdopterin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01568">
        <property type="entry name" value="Molydop_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10588">
        <property type="entry name" value="NADH-G_4Fe-4S_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00926">
        <property type="entry name" value="Molybdop_Fe4S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00929">
        <property type="entry name" value="NADH-G_4Fe-4S_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="SSF50692"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51839">
        <property type="entry name" value="4FE4S_HC3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51669">
        <property type="entry name" value="4FE4S_MOW_BIS_MGD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00641">
        <property type="entry name" value="COMPLEX1_75K_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00642">
        <property type="entry name" value="COMPLEX1_75K_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="3 8" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="6 8" id="KW-0408">Iron</keyword>
    <keyword evidence="7 8" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="9">
        <location>
            <begin position="2"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S His(Cys)3-ligated-type" evidence="12">
        <location>
            <begin position="82"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="10">
        <location>
            <begin position="141"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="10">
        <location>
            <begin position="180"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S Mo/W bis-MGD-type" evidence="11">
        <location>
            <begin position="219"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="226"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="229"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="233"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="261"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO18229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="878" mass="97446" checksum="7CF6922AB315A293" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUX3</accession>
    <name>A0A0M2UUX3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Cobalt-precorrin-5B C(1)-methyltransferase</fullName>
            <ecNumber evidence="5">2.1.1.195</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Cobalt-precorrin-6A synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">cbiD</name>
        <name evidence="7" type="ORF">BROFUL_01887</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>Co-precorrin-5B + S-adenosyl-L-methionine = Co-precorrin-6A + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:26285"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:60063"/>
            <dbReference type="ChEBI" id="CHEBI:60064"/>
            <dbReference type="EC" id="2.1.1.195"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Cofactor biosynthesis; adenosylcobalamin biosynthesis; cob(II)yrinate a,c-diamide from sirohydrochlorin (anaerobic route): step 6/10.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the CbiD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.195" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000194">
        <property type="protein sequence ID" value="KKO19425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19425">
        <property type="protein sequence ID" value="KKO19425"/>
        <property type="gene ID" value="BROFUL_01887"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2353"/>
    <dbReference type="UniPathway" id="UPA00148">
        <property type="reaction ID" value="UER00227"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043780">
        <property type="term" value="F:cobalt-precorrin-5B C1-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046140">
        <property type="term" value="P:corrin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00787">
        <property type="entry name" value="CbiD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002748">
        <property type="entry name" value="CbiD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036074">
        <property type="entry name" value="CbiD_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35863">
        <property type="entry name" value="PTHR35863"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01888">
        <property type="entry name" value="CbiD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF026782">
        <property type="entry name" value="CbiD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111342">
        <property type="entry name" value="SSF111342"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00312">
        <property type="entry name" value="cbiD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 5" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="2 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 5" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="285"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="288"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="307"/>
            <end position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="418" mass="44899" checksum="F626D2A6D0C67541" modified="2015-11-11" version="1">MRFGYTTGSCATAAAKAAAIGLFHGNIPDEIEIDTPAGITLRLTITDKQLSEGFADCAVQKDAGDDPDVTHGCKVHARIERIIGETIEIDGGEGVGRVTKPGLQVPVGHAAINPVPRSMIEHAVREVIGKDTGAKVIISVPNGSALAEKTFNPKLGIVGGISIIGTTGIVRPMSEDAFKTSLLCGLDIAGGIGYETVVLVPGSLGERSILNLVDIPKDQIIQISNFVGFMLDEARKRHFKKIILAGHPGKLAKLLRGDFHTHSAVSKPANDIMFDIIKQHMQNRDQGSEVRCQESVAKNSPFDTSSPDSIKKRDESKSALSRNTKVKSPPLSGTMLKGFKEATTVEGMVELLQEYGNLSIMDKIAGMIEAKIYAFYQDGQQYIRPEVGVILFDMKGLIAGISDSAQVWLNHTKTRSLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV74</accession>
    <name>A0A0M2UV74_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01350</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000139">
        <property type="protein sequence ID" value="KKO19958.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19958">
        <property type="protein sequence ID" value="KKO19958"/>
        <property type="gene ID" value="BROFUL_01350"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="35"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19958.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="54" mass="6582" checksum="E2C414B5D9A87737" modified="2015-11-11" version="1">MKRYFKDDCSHCNEYPHECDVCSSEIKASIHFKSRHRSNKKRDFKKDDKIVYNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVD6</accession>
    <name>A0A0M2UVD6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter permease component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_02344</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18951">
        <property type="protein sequence ID" value="KKO18951"/>
        <property type="gene ID" value="BROFUL_02344"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2912"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="63"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="93"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="119"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="161"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="217"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="55"/>
            <end position="235"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="252" mass="28033" checksum="F7DE08F091C01C05" modified="2015-11-11" version="1">MYGMLKRTIFFTLLAGLWQLLFWLGIWPEYVLPSPVSVGKTLVNGFQDYSLLIGVAISMKRIAIGYGISLGVGIFAGLLIGRFRIFEDTLGSLISGLQTLPTICWLPLSLLWFGLNDKAIIFLVFMGAVLSIATGTDSGVKNVPPLYIRAAKTMGAKRWKLYLEVIIPAALPHIIIGMKQGWSFAWRSLMAGELLIVCLGLGHLLMLGRELNDMSQVIAVMLVIILIGILVDRLFFIKVERHIRERWGLVKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVE3</accession>
    <name>A0A0M2UVE3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Tetratricopeptide repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01494</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000154">
        <property type="protein sequence ID" value="KKO19792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19792">
        <property type="protein sequence ID" value="KKO19792"/>
        <property type="gene ID" value="BROFUL_01494"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1849"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13176">
        <property type="entry name" value="TPR_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="310"/>
            <end position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19792.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="365" mass="41336" checksum="FA7BBDD11793A51D" modified="2015-11-11" version="1">MVDRFLMEQHKNWFSLHPIVREIGLQKLALSPADLQQAHSSVAPYYTRHFEAKQIVGWGALGGHFVEARYHLTKAEKAEDLRDIASRFQSYIFSTLSASSPIPHNAEELDERIAVLSAILESPGPKSLEYHLARLFLARNQRNDLRRGLHHAHRAKSKSDNVQSWLLCSEILSKMGKHEDAIEVLKQGINQIPPNKALVDLYDRCARLLTQSGRCNEATWTLNRGIDRIPPDKALVILYDNLARLLAQMQRYNEAITILKQGIDRIPPDKALAVLYISCCELLVQKERYEESLAILKQGVACVPPSKAAVDVYYRYGELLAQRGQYSDAIAVLKQGIDRIPPIKGFRLSMLFVVSCCLKVVSRKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVS2</accession>
    <name>A0A0M2UVS2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01602</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19670">
        <property type="protein sequence ID" value="KKO19670"/>
        <property type="gene ID" value="BROFUL_01602"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="165" mass="18617" checksum="FB5A90B65DD19F87" modified="2015-11-11" version="1">MIVFDSSTLILLAKTDLLELFVLDFRGKVFIPPKVKTEACIEKREETPLIVTLIKDKRIEVLEAKNSRQIKKFMDDFNIDAGEAEALTRAIQEGAGIVATDDRNAIRACKILKLDFVSAIAVLIRAFEKNLIDRDEAVVKLQKLASIGRYSRTIIEDAIKKIKEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVV3</accession>
    <name>A0A0M2UVV3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Fosmidomycin resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">fsr</name>
        <name evidence="7" type="ORF">BROFUL_01577</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000166">
        <property type="protein sequence ID" value="KKO19705.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19705">
        <property type="protein sequence ID" value="KKO19705"/>
        <property type="gene ID" value="BROFUL_01577"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1945"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="58"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="111"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="150"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="177"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="225"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="264"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="295"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="319"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="351"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="382"/>
            <end position="405"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="24"/>
            <end position="405"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19705.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="424" mass="46354" checksum="9CAAEC92B7188A24" modified="2015-11-11" version="1">MKNTKTVKEQLAKNVKSNGAVFSILFSLSAAHLLNDALQSVLPSIYPLLKTDYKLSFTQIGLITLTYQLTASILQPLVGYFTDKKPQPYSLAIGMCFTLMSLSSLAYSSSFVTVLISGALVGIGSSVFHPESSRVARYASGGRAGMAQSVFQVGGNTGTAIGPLLAAAIIVPFGQRYIVFFSLLAFIAIIILWRVGNWSKRQDFQKRERTNPDMQNVSRVSKYKIVLALGILMILMFSKFFYMASMQNYLTFYMIHHFGVSIQSSQIFLFIFLFAVAAGTIIGGPLGDRYGRKKIIWISILGIAPFALLLPYANLIWTAILTAFIGMTLASAFPAIIVYGQELIPEKLGMVSGLFFGFAFGMGAVGSAALGALADKTGIEFVFKICSFLPLLGLFAGFLPTLEHFSKKNKKNRKKGKKKKSNKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVV6</accession>
    <name>A0A0M2UVV6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01251</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO19982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19982">
        <property type="protein sequence ID" value="KKO19982"/>
        <property type="gene ID" value="BROFUL_01251"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="16"/>
            <end position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="127" mass="14029" checksum="D3C00E5BF11F93BE" modified="2015-11-11" version="1">MIIYQKIPKLQNDKGFLLIETILAIALIAIGLFSVMSLTIGVIRGNSHSKMVTAATTLAQDKMEYFKGIDYDSIADTSTISTDYYLEAIVQNNTPGIDSKTVTINVYWNPGEVTSNHKVTLHTIFAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVY1</accession>
    <name>A0A0M2UVY1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Molybdenum cofactor biosynthesis protein A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">moaA_1</name>
        <name evidence="6" type="ORF">BROFUL_02610</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18659">
        <property type="protein sequence ID" value="KKO18659"/>
        <property type="gene ID" value="BROFUL_02610"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3237"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023885">
        <property type="entry name" value="4Fe4S-binding_SPASM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13186">
        <property type="entry name" value="SPASM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="5">
        <location>
            <begin position="26"/>
            <end position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="367" mass="41698" checksum="218DD8E46D56720B" modified="2015-11-11" version="1">MGELVLDGHKLAWHKDRVDAWLQGERIAPVTIDCALTRSCTYRCVYCYGMLQSNDIKRMTRDVIFRFLDDAAEIGVKGISFVSDGESTCSPHLYDAILRGRQNGLDMALGTNGYLLKEERLEEALAALTYLRFNISAAEADRYTGIHGCEEGCYGRVINVIKACVKIKKEKNLEVTLGLQMVLLPEFADQIIPLAKLGRELGVDYLVIKHCSDDERGSLGVDYSKYYELAEVLKKAETYSDDKYLVKAKWSKILSGGKRNYSRCYGPPFIMQFSGSGLVAPCGMLFNERYKEYHMGNIADTSFKKIWQSDRYWEVVNLIASEKFDARTMCGSLCLQHKVNECLWALRHENAILTREDARPPMHINFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVZ8</accession>
    <name>A0A0M2UVZ8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative phage protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02625</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18674.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18674">
        <property type="protein sequence ID" value="KKO18674"/>
        <property type="gene ID" value="BROFUL_02625"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3257"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011101">
        <property type="entry name" value="DUF5131"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07505">
        <property type="entry name" value="DUF5131"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18674.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="75" mass="8770" checksum="2EB706023D1AEBE4" modified="2015-11-11" version="1">MKKEWVVQIRGQCIEQGVPFFFKQWGGINKKKTGRLLEGRTWDEIPLKLIELEEEIEHDKSLRLTAIPLALHSGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW08</accession>
    <name>A0A0M2UW08_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01536</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000158">
        <property type="protein sequence ID" value="KKO19760.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19760">
        <property type="protein sequence ID" value="KKO19760"/>
        <property type="gene ID" value="BROFUL_01536"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19760.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="226" mass="25478" checksum="CB88758E03654A5B" modified="2015-11-11" version="1">MGIDMQYLNLAKDAIREVVNLAPDLNKAIAKGEEQATTRDGVIQTINEMCDALQLASDLISKELSTSITEFNRIRPEKEEVLQAYFERVATKFSEPSLRLLLHEGTVCGELHKLGDRFEQPFSKETTSGVSWWENVRTFFSRSNSMANVLHGLIEGERNYLRSFSEFLDDVRDSAETATQVPWENNATLRTKGEELVKLMRQKRSGLQSKLSEIRVAADAALGALH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW10</accession>
    <name>A0A0M2UW10_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NAD-dependent epimerase/dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02134</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19151">
        <property type="protein sequence ID" value="KKO19151"/>
        <property type="gene ID" value="BROFUL_02134"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2661"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Epimerase" evidence="1">
        <location>
            <begin position="5"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="312" mass="34823" checksum="76ED1B8811A815A6" modified="2015-11-11" version="1">MSYKILVTGGAGYIGSILVPELLKQGHKVTVLDNFMFGQNSLLECCAYNHFDVFRGDARDESILKPLLQKHDYIIPLAALVGAPLCSRDKIGTVTTSRDAALSLVKLASAEHRIIIPTTNSGYGVGQKGVYCTEETPLKPISLYGIVKAEAEKIVLDRGNAISFRLATVFGMSPRMRIDLLVNDFTYRAVNDRFVVIFEGHFKRNYIHIRDVARAFLHAINNFEGMKNEPYNVGMSDANLSKLELCAKIKECIPDFVYLESPVGEDPDKRDYVVSNEKIEKTGFKPLYSLEAGIKELIKGYRIITNSKYGNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW21</accession>
    <name>A0A0M2UW21_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Protein-glutamate O-methyltransferase</fullName>
            <ecNumber evidence="2">2.1.1.80</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">cheR</name>
        <name evidence="7" type="ORF">BROFUL_02578</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>L-glutamyl-[protein] + S-adenosyl-L-methionine = [protein]-L-glutamate 5-O-methyl ester + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:24452"/>
            <dbReference type="Rhea" id="RHEA-COMP:10208"/>
            <dbReference type="Rhea" id="RHEA-COMP:10311"/>
            <dbReference type="ChEBI" id="CHEBI:29973"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:82795"/>
            <dbReference type="EC" id="2.1.1.80"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.80" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000239">
        <property type="protein sequence ID" value="KKO18699.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18699">
        <property type="protein sequence ID" value="KKO18699"/>
        <property type="gene ID" value="BROFUL_02578"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3201"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008983">
        <property type="term" value="F:protein-glutamate O-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.155.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026024">
        <property type="entry name" value="Chemotaxis_MeTrfase_CheR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022642">
        <property type="entry name" value="CheR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000780">
        <property type="entry name" value="CheR_MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022641">
        <property type="entry name" value="CheR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036804">
        <property type="entry name" value="CheR_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01739">
        <property type="entry name" value="CheR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03705">
        <property type="entry name" value="CheR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000410">
        <property type="entry name" value="CheR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00996">
        <property type="entry name" value="CHERMTFRASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00138">
        <property type="entry name" value="MeTrc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50123">
        <property type="entry name" value="CHER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="CheR-type methyltransferase" evidence="6">
        <location>
            <begin position="1"/>
            <end position="277"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18699.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="277" mass="32771" checksum="B0390E1832E5D27E" modified="2015-11-11" version="1">MDIDINDKEFGLFQRLIYNKSGINLTPAKKELLKSRLIKRLRERSLTSFKEYYQYVTEEDTTGEELVSMLDCISTNLTEFFRESAHFDFLSENVLPVLLENKRKNREKKIRIWCAGCSTGEEPYSISMILSERIEQLSKWDIKILATDLSTRVLKKATQGIYAKERLRDIPLQMLNTYFKKESHNLKDCYQINDFLKGLIAFRRLNLTDEIFPFKGQFDFIFCRNVMIYFDKQTQSELVSKFYKHLAPEGYLFIGHSESLAGTETRFRYVRPTVYQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW31</accession>
    <name>A0A0M2UW31_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00982</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000118">
        <property type="protein sequence ID" value="KKO20273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20273">
        <property type="protein sequence ID" value="KKO20273"/>
        <property type="gene ID" value="BROFUL_00982"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="130" mass="14805" checksum="E4821B53D2FA11B4" modified="2015-11-11" version="1">MTTAILENSMVQGDISKENIQILIEEKINAFDSAIERHEFLEIDGDILGNTPKEDCIKIINHKLECAFAIDVDSVIRQDVESVIHALETGITTRLYGVTRIVGYYSRVSNWNKSKIGELHDRHMGRYSVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWA7</accession>
    <name>A0A0M2UWA7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02051</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19251.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19251">
        <property type="protein sequence ID" value="KKO19251"/>
        <property type="gene ID" value="BROFUL_02051"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19251.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="37" mass="4069" checksum="97203988C2482C62" modified="2015-11-11" version="1">MFIFSAYSVAICLFFGYKVTKIATAVHDLEIAKKGGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWE8</accession>
    <name>A0A0M2UWE8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00884</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000107">
        <property type="protein sequence ID" value="KKO20393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20393">
        <property type="protein sequence ID" value="KKO20393"/>
        <property type="gene ID" value="BROFUL_00884"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071704">
        <property type="term" value="P:organic substance metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001539">
        <property type="entry name" value="Peptidase_U32"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01136">
        <property type="entry name" value="Peptidase_U32"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="682" mass="76693" checksum="218F0580C2BDBE96" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWG6</accession>
    <name>A0A0M2UWG6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Hydrogenase expression/formation protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01371</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000141">
        <property type="protein sequence ID" value="KKO19920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19920">
        <property type="protein sequence ID" value="KKO19920"/>
        <property type="gene ID" value="BROFUL_01371"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="81" mass="9269" checksum="6AF5411E01D6DA0F" modified="2015-11-11" version="1">MKYFPVRKLNFNLLEKRLNANPITYQRIIIGPRIDENAAVIDFGKKHLVAKTNPVTFTTQGIIIHTGTADIILCRFAKVWT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWH6</accession>
    <name>A0A0M2UWH6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Intracellular proteinase I</fullName>
            <ecNumber evidence="2">3.4.-.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01030</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.-.-" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20182.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20182">
        <property type="protein sequence ID" value="KKO20182"/>
        <property type="gene ID" value="BROFUL_01030"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002818">
        <property type="entry name" value="DJ-1/PfpI"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01965">
        <property type="entry name" value="DJ-1_PfpI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DJ-1_PfpI" evidence="1">
        <location>
            <begin position="36"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20182.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="202" mass="21283" checksum="1063809503ACE83F" modified="2015-11-11" version="1">MRNFLPGLVIAPFLLSGLFIDPIMGDSVMQSIKGKKAVMIIACNNFRDEELLQPKEVLEKNGVTVTVASSSLKESTGMLGAKVKPEILFTDIHASDYDAVIFVGGSGANEYWDNPIAHKIANDAHTAKKIVGAICIAPVTLAKAGLLKSKKATTYSSTVKEIQSAGANYTGADVERDGNIITASGPAAAQKFGETIAKALSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWJ5</accession>
    <name>A0A0M2UWJ5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Heme chaperone HemW</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02425</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the anaerobic coproporphyrinogen-III oxidase family. HemW subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000231">
        <property type="protein sequence ID" value="KKO18879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18879">
        <property type="protein sequence ID" value="KKO18879"/>
        <property type="gene ID" value="BROFUL_02425"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3014"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004109">
        <property type="term" value="F:coproporphyrinogen oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006779">
        <property type="term" value="P:porphyrin-containing compound biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034505">
        <property type="entry name" value="Coproporphyrinogen-III_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010723">
        <property type="entry name" value="HemN_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004559">
        <property type="entry name" value="HemW-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13932">
        <property type="entry name" value="PTHR13932"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06969">
        <property type="entry name" value="HemN_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00562">
        <property type="entry name" value="HemN-like__clustered_with_heat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00539">
        <property type="entry name" value="hemN_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="2" id="KW-0143">Chaperone</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0349">Heme</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="3">
        <location>
            <begin position="9"/>
            <end position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU364116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="385" mass="44301" checksum="B05943360ADBA806" modified="2015-11-11" version="1">MYSFRMTEKIDIAPHALYIHVPFCARKCNYCDFHSMVSDTGMIDRYLHALEKELALLPGEYLFQTVYIGGGTPSVLKESQLEKLLSCIIRCIPASEIREYTVEVNPGTLTKNKVELLKGYRVNRISLGVQSFQNKQLELLGRIHSGDDARDAFALLRKNGFQNVNIDLIFGCPEQTPDDWERDLRTAVELNPEHLSAYSLTYEEGTPLAVDLKNAVVDKLEECVELEMYKMAIDYLTRNRYHHYEISNFARDGYECCHNRVYWENREYVGVGTGAHSFLHGMRTANEKDVLKYIQRIQENTSIKLFGECLPPDRLASETVIMSLRLRQGISNAVFYKRFGYALEDQFGDQINRLRAHGLVAFEDERLKLTEKGLFVADTVMTEFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWK0</accession>
    <name>A0A0M2UWK0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">4-hydroxythreonine-4-phosphate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02431</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000231">
        <property type="protein sequence ID" value="KKO18884.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18884">
        <property type="protein sequence ID" value="KKO18884"/>
        <property type="gene ID" value="BROFUL_02431"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3021"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005255">
        <property type="entry name" value="PdxA_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30004">
        <property type="entry name" value="PTHR30004"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04166">
        <property type="entry name" value="PdxA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00557">
        <property type="entry name" value="pdxA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18884.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="321" mass="34462" checksum="5592A1E77E29F99B" modified="2015-11-11" version="1">MGDPCGIGPEIILKSLNAPAIRECAQYVIIGNQGVFDLTARELDLPLSYREISQLPDRDSAHPVSLLNMGEINQGIMKQKKPTAEGGDVSVQCVIRGINLAMSGHIDALVTAPICKEAIHLGGYGYPGHTEMLQIFSGAKRVVMLMVGGKLRVAFATTHIALREVPQSITAESILETITITDHHLKQYFGIKEPKIAVCGLNPHAGEEGIFGDEERKVIMPAIEKARKKGIDCDGPVSADTIYYKSLKGACDAVVAIYHDQGAIPLKLHAFETGVNITLGIPFIRTSPDHGTAYDIAGRGIANPHSMMEALKMAVGMAGCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWK6</accession>
    <name>A0A0M2UWK6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01950</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000199">
        <property type="protein sequence ID" value="KKO19351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19351">
        <property type="protein sequence ID" value="KKO19351"/>
        <property type="gene ID" value="BROFUL_01950"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025522">
        <property type="entry name" value="DUF4410"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14366">
        <property type="entry name" value="DUF4410"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="110" mass="11016" checksum="2125D3F075D5B18C" modified="2015-11-11" version="1" fragment="single">GSAVKRMTIGFGSGSSKLQVVAEGYQVTAQGLRKLGGGTVEAGGSKGPGTALGAAGWIATANPAGLIVSGGMKVYGEASGKAKIGGRAKQVAKEIADHLKTRFKEQGWID</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWK7</accession>
    <name>A0A0M2UWK7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01067</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20217">
        <property type="protein sequence ID" value="KKO20217"/>
        <property type="gene ID" value="BROFUL_01067"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="67" mass="7746" checksum="19FD5BABADE617EF" modified="2015-11-11" version="1">MALRFFADHCISNVIIKTLQDAGNEVLRLRDYISSDSTDQIVISKAVESDAAKREKRKQERDKDIRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWL0</accession>
    <name>A0A0M2UWL0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02395</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000229">
        <property type="protein sequence ID" value="KKO18894.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18894">
        <property type="protein sequence ID" value="KKO18894"/>
        <property type="gene ID" value="BROFUL_02395"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18894.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="59" mass="7034" checksum="301277FB0864E230" modified="2015-11-11" version="1">MPCPAIHHRCPFAMVDTGRWVTLYEQGMFCCRRNAMRNFTGKEAAKNTLYLRFHERQEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWM4</accession>
    <name>A0A0M2UWM4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02388</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000228">
        <property type="protein sequence ID" value="KKO18909.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18909">
        <property type="protein sequence ID" value="KKO18909"/>
        <property type="gene ID" value="BROFUL_02388"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2968"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039448">
        <property type="entry name" value="Beta_helix"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006626">
        <property type="entry name" value="PbH1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13229">
        <property type="entry name" value="Beta_helix"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00710">
        <property type="entry name" value="PbH1"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="SSF51126"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Beta_helix" evidence="1">
        <location>
            <begin position="324"/>
            <end position="416"/>
        </location>
    </feature>
    <feature type="domain" description="Beta_helix" evidence="1">
        <location>
            <begin position="428"/>
            <end position="558"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18909.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="691" mass="77189" checksum="81F6526C052D4B01" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWU6</accession>
    <name>A0A0M2UWU6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">DNA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00732</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the bacterial histone-like protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000092">
        <property type="protein sequence ID" value="KKO20538.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20538">
        <property type="protein sequence ID" value="KKO20538"/>
        <property type="gene ID" value="BROFUL_00732"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.926"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030527">
        <property type="term" value="F:structural constituent of chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.520.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000119">
        <property type="entry name" value="Hist_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020816">
        <property type="entry name" value="Histone-like_DNA-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010992">
        <property type="entry name" value="IHF-like_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33175">
        <property type="entry name" value="PTHR33175"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00216">
        <property type="entry name" value="Bac_DNA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01727">
        <property type="entry name" value="DNABINDINGHU"/>
    </dbReference>
    <dbReference type="SMART" id="SM00411">
        <property type="entry name" value="BHL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47729">
        <property type="entry name" value="SSF47729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00045">
        <property type="entry name" value="HISTONE_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20538.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="91" mass="9774" checksum="4350C983DBCEA360" modified="2015-11-11" version="1">MNKQELIDIVAKECEVSKACGEAAVNAVLNGIKNGVKKSKEVRLIGFGTFSVRARKARKGRNPQTGAVINIKASKAIKFTAGQDFKNAVNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWW0</accession>
    <name>A0A0M2UWW0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two-component sensor kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00964</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000116">
        <property type="protein sequence ID" value="KKO20332.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20332">
        <property type="protein sequence ID" value="KKO20332"/>
        <property type="gene ID" value="BROFUL_00964"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13426">
        <property type="entry name" value="PAS_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PAS" evidence="3">
        <location>
            <begin position="4"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="4">
        <location>
            <begin position="73"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="2">
        <location>
            <begin position="170"/>
            <end position="380"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20332.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="382" mass="43291" checksum="FBF9D8EFEBDC24D0" modified="2015-11-11" version="1">MDVSERFLQTALDGIHDCINIVDKNFQIIFVNEAASKRAGKNWRSLLGNTCYAQLWGKNAPCENCVTRKAFETGKPQQTIKWEIGNDGKKHFMEHFVFPIVEKDDTVEYTVEIFRDITERKLLEEEREQQRLELGKRIRELRHAYEELKSLQNQLLQAEKMASVGLLASSLAHELDTPLATISGYCELLAEGIDDNHLLGHVKTISEQVTKCQKTTRSLLDFSRKSNGERKWCNIHHLISSILSLVEHRLILHKIKLHTLFDNQLPLLFVDGNQIQQVILNLVNNAVDAQPQGGDIFIETRMNHATKSVELLFEDNGVGIPHENRKHIFSPFFTTKDPGKGTGLGLSICKNIIIAHDGRITLENRNGNGTKFVISLPVSEAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWX6</accession>
    <name>A0A0M2UWX6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 11">Replicative DNA helicase</fullName>
            <ecNumber evidence="3 11">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BROFUL_00686</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the helicase family. DnaB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="3 11"/>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20568.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20568">
        <property type="protein sequence ID" value="KKO20568"/>
        <property type="gene ID" value="BROFUL_00686"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.873"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990077">
        <property type="term" value="C:primosome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006269">
        <property type="term" value="P:DNA replication, synthesis of RNA primer"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00984">
        <property type="entry name" value="DnaB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.860.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036185">
        <property type="entry name" value="DNA_heli_DnaB-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007692">
        <property type="entry name" value="DNA_helicase_DnaB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007694">
        <property type="entry name" value="DNA_helicase_DnaB-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007693">
        <property type="entry name" value="DNA_helicase_DnaB-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016136">
        <property type="entry name" value="DNA_helicase_N/primase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00772">
        <property type="entry name" value="DnaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03796">
        <property type="entry name" value="DnaB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48024">
        <property type="entry name" value="SSF48024"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00665">
        <property type="entry name" value="DnaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51199">
        <property type="entry name" value="SF4_HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 11" id="KW-0235">DNA replication</keyword>
    <keyword evidence="10 11" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8 11 13" id="KW-0347">Helicase</keyword>
    <keyword evidence="7 11" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-0639">Primosome</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SF4 helicase" evidence="12">
        <location>
            <begin position="180"/>
            <end position="443"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008428"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00021957"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU362085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51199"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO20568.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="445" mass="50018" checksum="C7401CA01702F2C6" modified="2015-11-11" version="1">MVVESILERTLPQSIEAEMSVLGAMLLDNEVISLVIPTLAKNSFYKTAHQELYQTIVEVYDKGQMIDLVVLREELKKRSLLEKVGGTEYLMELEEAVPTIGNVEFYANIVREKAIKRNLIEVAASIQKQAFDESSDTGQLLDSSERAIFDITQKKFHVASSKLNEILKETFSRIENLHDRQNRLTGLSTGFYDLDDLTCGLQASELIIVAARPSMGKTSLALNILEHAGVIDKKPVVLFSLEMSAQQVAQNMLCSHARIDAHKLRKGFLEDKQWSDLSYGLGSLSEAPIFIDDTPGLSVLEVRAKARRLKAQYDIQMIAVDYLQLMEATRAENRQQEISVISRGLKSLARELSIPVIVVSQLNRSVESREGHRPRMSDLRESGSIEQDADVVILLHREDYYDPERKDGTAELIIAKQRNGPIGVVKLAFLSHYMRFENLASIGNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX46</accession>
    <name>A0A0M2UX46_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Lipopolysaccharide core biosynthesis protein</fullName>
            <ecNumber evidence="3">2.4.1.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rfaG_2</name>
        <name evidence="3" type="ORF">BROFUL_02245</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.-" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19064">
        <property type="protein sequence ID" value="KKO19064"/>
        <property type="gene ID" value="BROFUL_02245"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028098">
        <property type="entry name" value="Glyco_trans_4-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13439">
        <property type="entry name" value="Glyco_transf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_4-like_N" evidence="2">
        <location>
            <begin position="15"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="domain" description="Glycos_transf_1" evidence="1">
        <location>
            <begin position="194"/>
            <end position="353"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="384" mass="43974" checksum="C46201A5F6EB538B" modified="2015-11-11" version="1">MKIAFVVYQFIREKGGVESYVWNASKQLLDRGHEVHIFAHRSCPDPDKRLIFHRIPAITFWSPLKYWTFAVNAPKIIKNSAIAFDLIHGFTQTLSQDIYRVGGGCHWDYMMHTYPLMQSRLGKIFMCMNPRHFSLLLLEKIIFKKKCYKQITCISEQCKGELIRHYQLSPDDIEVIYNGVDVKVFTPHNRPIYRDRIRAQYAITPDEVLVLFVGSGFKRKGLRHVINALSLFGASQKIKLLVVGRGNVREYQRFAKKKGVLDKLVFAGVCKHIHEIYAAGDIFIFPSEYDAFGTACLEAMASGLPVIVSSASGVSEIVTHGEDGFTVRHPIDAEEIAKYLRALLNKEAREHMGFLARLKAERYSFQANIEKTLQVYRKVSNIHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX66</accession>
    <name>A0A0M2UX66_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02214</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000221">
        <property type="protein sequence ID" value="KKO19079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19079">
        <property type="protein sequence ID" value="KKO19079"/>
        <property type="gene ID" value="BROFUL_02214"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="48" mass="5544" checksum="ADCE03D1FB33B8E5" modified="2015-11-11" version="1">MMISFLPTENHQIPLSHLAHDHGEFFPIAGIAYDFGYYCYTEDTSLYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXB4</accession>
    <name>A0A0M2UXB4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Thymidylate kinase</fullName>
            <ecNumber evidence="3">2.7.4.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">dTMP kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">tmk</name>
        <name evidence="5" type="ORF">BROFUL_02186</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 3">
            <text>ATP + dTMP = ADP + dTDP</text>
            <dbReference type="Rhea" id="RHEA:13517"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58369"/>
            <dbReference type="ChEBI" id="CHEBI:63528"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.9"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the thymidylate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.9" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000216">
        <property type="protein sequence ID" value="KKO19104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19104">
        <property type="protein sequence ID" value="KKO19104"/>
        <property type="gene ID" value="BROFUL_02186"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2726"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004798">
        <property type="term" value="F:thymidylate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006233">
        <property type="term" value="P:dTDP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006235">
        <property type="term" value="P:dTTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00165">
        <property type="entry name" value="Thymidylate_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039430">
        <property type="entry name" value="Thymidylate_kin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018094">
        <property type="entry name" value="Thymidylate_kinase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02223">
        <property type="entry name" value="Thymidylate_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0545">Nucleotide biosynthesis</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thymidylate_kin" evidence="4">
        <location>
            <begin position="10"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="10"/>
            <end position="17"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02223"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="226" mass="25675" checksum="57410C07EFC919F8" modified="2015-11-11" version="1">MQGRLIVLTGIDGSGKTVQTKLLHKRLQEEGYPANITDFPQYGKTFFADMVTKYLKGEFGSADSVSPYLAALLYAGDRWECKDQIRGWLREGRIIVSNRYVCDNMAHQGGKMRGAAEKGEFFRWLDTLEYQIFGVPRSNLNILLYVPAEIACRLVEKKEQRAYLAGAKKDVHEEDINHLRCAQQTFLEIAQGKKDWITVDCTENGQLLPEQIIADKVWQVVKGILS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXG2</accession>
    <name>A0A0M2UXG2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_01005</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Endosome membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000119">
        <property type="protein sequence ID" value="KKO20260.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20260">
        <property type="protein sequence ID" value="KKO20260"/>
        <property type="gene ID" value="BROFUL_01005"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070161">
        <property type="term" value="C:anchoring junction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031410">
        <property type="term" value="C:cytoplasmic vesicle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008324">
        <property type="term" value="F:cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1510.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002524">
        <property type="entry name" value="Cation_efflux"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027469">
        <property type="entry name" value="Cation_efflux_TMD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026765">
        <property type="entry name" value="Tmem163"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31937">
        <property type="entry name" value="PTHR31937"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01545">
        <property type="entry name" value="Cation_efflux"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161111">
        <property type="entry name" value="SSF161111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0965">Cell junction</keyword>
    <keyword evidence="9" id="KW-0968">Cytoplasmic vesicle</keyword>
    <keyword evidence="4" id="KW-0967">Endosome</keyword>
    <keyword evidence="8 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="42"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="68"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="112"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="139"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004608"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023329"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO20260.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="242" mass="26993" checksum="B30B17FCBF63441A" modified="2015-11-11" version="1">MVNAQKYNAIVRSKWKCIPIVMVNQEPVKLQAKTYLYKRASILALVTIFYNIIEGIVSLLLGMEDETLSLFGFGLDSFVEVISGIGVWHMIHRFKKKNDTHPDRFEQQALRITGTAFYILVFGLTTTAILNLYQGHKPVTTFWGIVVALVSISSMWLLIHFKVKVGRQLNSQAILTDANCTKTCLYLSVVLLLTSIGYEYTGIGGMDAMGTLAIAFFSLKEGREAFQKAKGIACACHQKVQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXH0</accession>
    <name>A0A0M2UXH0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01634</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000170">
        <property type="protein sequence ID" value="KKO19656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19656">
        <property type="protein sequence ID" value="KKO19656"/>
        <property type="gene ID" value="BROFUL_01634"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2015"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030296">
        <property type="entry name" value="MlaF/Mkl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43023:SF6">
        <property type="entry name" value="PTHR43023:SF6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="2"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="34"/>
            <end position="41"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="248" mass="27397" checksum="57286201C51013A3" modified="2015-11-11" version="1">MIKVVDLFKSFKGQEVLRGVNLTIEEGCSMALIGGSGQGKSILLKHIIGLLRPDHGKVLIDNQDIGKLRGRPLKRLKERFGVVFQGGALFDSLTVFDNVAFPLREKTRLSESVIRDKVRQELKRVGLSGAEKKYPAEISGGMKKRAALARGLIMNPEIVFFDEPTTGLDPLISKAIHKLIRECQKSLNFTAIVVTHEIPAIFSIVDYIAMLYNGKIVFTGTPEEIKASPDPVVHQFIHGELEGPISIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXI6</accession>
    <name>A0A0M2UXI6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">FGE-sulfatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00994</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000118">
        <property type="protein sequence ID" value="KKO20285.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20285">
        <property type="protein sequence ID" value="KKO20285"/>
        <property type="gene ID" value="BROFUL_00994"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016187">
        <property type="entry name" value="CTDL_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005532">
        <property type="entry name" value="SUMF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042095">
        <property type="entry name" value="SUMF_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03781">
        <property type="entry name" value="FGE-sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56436">
        <property type="entry name" value="SSF56436"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FGE-sulfatase" evidence="1">
        <location>
            <begin position="13"/>
            <end position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20285.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="253" mass="28746" checksum="F3024EFD7E247367" modified="2015-11-11" version="1">MIRKSERGQDIPEGMVIVPEGQFFMGSTQQDIAKLLESDRNIEAERLENEVPQRTVSLNAYLIDKYPVTNAHYKLFVEAGGYTQKSLWSDAGWQYIVQAKPLENNELDAVFHGESDCPVVNISWYEAEAFAAWSGKRLPTEAEWEKAARGTDGRIYPWGNEFDKTRLNCAEAKIERPTPVTKYPQGQSVYGCFDMAGNVWEWTADWYDSQYYRHAPDKNPQGPGMAEENPYFGRPEEVGISIYDLKPSPAGRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXR5</accession>
    <name>A0A0M2UXR5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01532</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000158">
        <property type="protein sequence ID" value="KKO19756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19756">
        <property type="protein sequence ID" value="KKO19756"/>
        <property type="gene ID" value="BROFUL_01532"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="628" mass="70604" checksum="DC5D4C84A095070A" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXW4</accession>
    <name>A0A0M2UXW4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 10">3-oxoacyl-[acyl-carrier-protein] synthase 2</fullName>
            <ecNumber evidence="3 10">2.3.1.179</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">BROFUL_01969</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Involved in the type II fatty acid elongation cycle. Catalyzes the elongation of a wide range of acyl-ACP by the addition of two carbons from malonyl-ACP to an acyl acceptor. Can efficiently catalyze the conversion of palmitoleoyl-ACP (cis-hexadec-9-enoyl-ACP) to cis-vaccenoyl-ACP (cis-octadec-11-enoyl-ACP), an essential step in the thermal regulation of fatty acid composition.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>(9Z)-hexadecenoyl-[ACP] + H(+) + malonyl-[ACP] = 3-oxo-(11Z)-octadecenoyl-[ACP] + CO2 + holo-[ACP]</text>
            <dbReference type="Rhea" id="RHEA:55040"/>
            <dbReference type="Rhea" id="RHEA-COMP:9623"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="Rhea" id="RHEA-COMP:10800"/>
            <dbReference type="Rhea" id="RHEA-COMP:14074"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="ChEBI" id="CHEBI:78449"/>
            <dbReference type="ChEBI" id="CHEBI:83989"/>
            <dbReference type="ChEBI" id="CHEBI:138538"/>
            <dbReference type="EC" id="2.3.1.179"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>a fatty acyl-[ACP] + H(+) + malonyl-[ACP] = a 3-oxoacyl-[ACP] + CO2 + holo-[ACP]</text>
            <dbReference type="Rhea" id="RHEA:22836"/>
            <dbReference type="Rhea" id="RHEA-COMP:9623"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="Rhea" id="RHEA-COMP:9916"/>
            <dbReference type="Rhea" id="RHEA-COMP:14125"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="ChEBI" id="CHEBI:78449"/>
            <dbReference type="ChEBI" id="CHEBI:78776"/>
            <dbReference type="ChEBI" id="CHEBI:138651"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 10">Lipid metabolism; fatty acid biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 10 12">Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.179" evidence="3 10"/>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19309.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19309">
        <property type="protein sequence ID" value="KKO19309"/>
        <property type="gene ID" value="BROFUL_01969"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2452"/>
    <dbReference type="UniPathway" id="UPA00094"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004315">
        <property type="term" value="F:3-oxoacyl-[acyl-carrier-protein] synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00834">
        <property type="entry name" value="KAS_I_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017568">
        <property type="entry name" value="3-oxoacyl-ACP_synth-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000794">
        <property type="entry name" value="Beta-ketoacyl_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018201">
        <property type="entry name" value="Ketoacyl_synth_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014031">
        <property type="entry name" value="Ketoacyl_synth_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014030">
        <property type="entry name" value="Ketoacyl_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020841">
        <property type="entry name" value="PKS_Beta-ketoAc_synthase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11712">
        <property type="entry name" value="PTHR11712"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00109">
        <property type="entry name" value="ketoacyl-synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02801">
        <property type="entry name" value="Ketoacyl-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000447">
        <property type="entry name" value="KAS_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00825">
        <property type="entry name" value="PKS_KS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03150">
        <property type="entry name" value="fabF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00606">
        <property type="entry name" value="B_KETOACYL_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 10" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="8 10" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="5 10" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10 12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PKS_KS" evidence="13">
        <location>
            <begin position="7"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012356"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00014657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR000447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR000447-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU003694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="SMART" id="SM00825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KKO19309.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="414" mass="44333" checksum="FB7DCB8DFEA2F1F0" modified="2015-11-11" version="1">MRKRRRVVITGVGAITSLGQEKKELWSALCEGKSGIKPITSFDTTAFDVHFGGEVSDFEPTRWLDTKEARRLDRFAQFALIASILAVEDAELRFEGFDKTRGGVIIGSGMGGLLELEAQHEILLKKGPSRISPFLIPKLMVNAAPAQVAIRFGLKGPNYALVTACTTGGNAIGEAVRTIQREDADIMVAGSSEAVVTPLTLGGFSSMKALSTRNDAPQKASRPFDKDRDGFVLSEGAGVVVLEEFEFARKRGARIYAEVLGYGLNSDAYHIAAPEPHGEGAKRCMISALKDAQCNPEEVGYINAHATSTPIGDNIEMKAVKEVFGVHAPKIPISSTKSMLGHQLGASGSVEVIICALAITESVMPPTINYETPDPECMGLDFIPLVAREKKVKIALSNSFGFGGHNACIILGQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY69</accession>
    <name>A0A0M2UY69_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Succinyl-diaminopimelate desuccinylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00234</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000029">
        <property type="protein sequence ID" value="KKO21033.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21033">
        <property type="protein sequence ID" value="KKO21033"/>
        <property type="gene ID" value="BROFUL_00234"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010182">
        <property type="entry name" value="ArgE/DapE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036264">
        <property type="entry name" value="Bact_exopeptidase_dim_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011650">
        <property type="entry name" value="Peptidase_M20_dimer"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07687">
        <property type="entry name" value="M20_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55031">
        <property type="entry name" value="SSF55031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01910">
        <property type="entry name" value="DapE-ArgE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="M20_dimer" evidence="3">
        <location>
            <begin position="180"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO21033.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="385" mass="42057" checksum="AE2792C747B52563" modified="2015-11-11" version="1">MQREEKEIVDLACKLINAKTENPPGDEILAVRIVEDFFQSLRIPCKIFEKVKNRANIVGYLGGKGEWPSAPTLLVACHLDVVPAGDDWKRNPFEAWIEDGRIYGRGSSDNKGQMASMMAVARFLKEHESGLKGQLILAGVADEERGSALGLEYLLNECGIKADYAIIPDVAHNMKLIDVTEKGALFLEITSHGKQAHGSRPEAGINAIENMMPLLERIKQLKFQKTSHPLHTPPTINLGSIHSGTAPNIVPALCKAQLDIRYLPDDSADNIVHAIKNIIRETEARSHAKFDLKILSNQVPTAVPADNPLVELISKHAVSVLGTRPQPRGMSGATVTKQLIQKGIVAVGFGPGDETEAHATNESIRIQELVDFAQIMTLIALDMLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY72</accession>
    <name>A0A0M2UY72_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Precorrin-6 methyltransferase CbiE</fullName>
            <ecNumber evidence="6">2.1.1.132</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">cbiE</name>
        <name evidence="6" type="ORF">BROFUL_01886</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.132" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000194">
        <property type="protein sequence ID" value="KKO19424.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19424">
        <property type="protein sequence ID" value="KKO19424"/>
        <property type="gene ID" value="BROFUL_01886"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2352"/>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046025">
        <property type="term" value="F:precorrin-6Y C5,15-methyltransferase (decarboxylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008276">
        <property type="term" value="F:protein methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd11644">
        <property type="entry name" value="Precorrin-6Y-MT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014776">
        <property type="entry name" value="4pyrrole_Mease_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012818">
        <property type="entry name" value="CbiE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="SSF53790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02467">
        <property type="entry name" value="CbiE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 6" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TP_methylase" evidence="5">
        <location>
            <begin position="8"/>
            <end position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19424.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="219" mass="24368" checksum="DD58519E7EB834BF" modified="2015-11-11" version="1">MAESHKNKVIIVGCGPGLKAYMSPKALYNIKKADILVGSRRLLKLFPGVDADKVVLEKNYSVLAQKIAEWSCSKQVVVLVSGDPCFFSYTRMLVKKMGRERCTIIPGISSIQLAFAAAGESWDDACFISLHGRNDNYEQLIKKVREYNKVGILTDHKNTPAVIARHLLKNGIQKRQMFICKNLSLPDEFVSETDLASATQAPTRGATVVIIKNMNHETR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYG8</accession>
    <name>A0A0M2UYG8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_00656</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000087">
        <property type="protein sequence ID" value="KKO20620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20620">
        <property type="protein sequence ID" value="KKO20620"/>
        <property type="gene ID" value="BROFUL_00656"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="328"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="9">
        <location>
            <begin position="348"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="8">
        <location>
            <begin position="428"/>
            <end position="642"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="385"/>
            <end position="419"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO20620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="642" mass="71428" checksum="E41B14BDA43B85A3" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYH6</accession>
    <name>A0A0M2UYH6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Putative multidrug efflux pump</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_00618</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20635">
        <property type="protein sequence ID" value="KKO20635"/>
        <property type="gene ID" value="BROFUL_00618"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.783"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042908">
        <property type="term" value="P:xenobiotic transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2090.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027463">
        <property type="entry name" value="AcrB_DN_DC_subdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001036">
        <property type="entry name" value="Acrflvin-R"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004764">
        <property type="entry name" value="HAE1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000731">
        <property type="entry name" value="SSD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32063">
        <property type="entry name" value="PTHR32063"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00873">
        <property type="entry name" value="ACR_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00702">
        <property type="entry name" value="ACRIFLAVINRP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82714">
        <property type="entry name" value="SSF82714"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00915">
        <property type="entry name" value="2A0602"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50156">
        <property type="entry name" value="SSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="342"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="368"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="394"/>
            <end position="419"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="440"/>
            <end position="460"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="472"/>
            <end position="499"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="542"/>
            <end position="562"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="874"/>
            <end position="889"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="896"/>
            <end position="920"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="926"/>
            <end position="951"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="972"/>
            <end position="991"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="1003"/>
            <end position="1029"/>
        </location>
    </feature>
    <feature type="domain" description="SSD" evidence="5">
        <location>
            <begin position="372"/>
            <end position="497"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1051" mass="115020" checksum="29A78F1148AE3019" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYI4</accession>
    <name>A0A0M2UYI4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Pseudouridine synthase</fullName>
            <ecNumber evidence="3">5.4.99.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01245</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the pseudouridine synthase RsuA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.-" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000135">
        <property type="protein sequence ID" value="KKO20046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20046">
        <property type="protein sequence ID" value="KKO20046"/>
        <property type="gene ID" value="BROFUL_01245"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1542"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0120159">
        <property type="term" value="F:rRNA pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000455">
        <property type="term" value="P:enzyme-directed rRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1560">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042092">
        <property type="entry name" value="PsdUridine_s_RsuA/RluB/E/F_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006145">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000748">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluB/E/F"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018496">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020094">
        <property type="entry name" value="TruA/RsuA/RluB/E/F_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00849">
        <property type="entry name" value="PseudoU_synth_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01479">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00363">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00093">
        <property type="entry name" value="TIGR00093"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01149">
        <property type="entry name" value="PSI_RSU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S4" evidence="4">
        <location>
            <begin position="3"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008348"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20046.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="256" mass="29246" checksum="CC22160F52ACB80B" modified="2015-11-11" version="1">MAERLQKILAEAGLGSRRECERIIVAGKVTVDGERVTTLGTTVDADKSEIRCNGTLIRKQRKIYFLLNKPKGYVCTNRDELERLKAIDIIKNVTQRIYTIGRLDKESEGLIVVTNDGDLANKLSHPKYEVSKTYFVEVDGYLSDAAIEALESGIWLSFGKTQPVRVRNVRRGRQRSRFEMVLKEGKNREIRRMLVDCNYKVRILRRIKIGNLYDPSLKIGKYRKVTDNELARLHALAERGSARRATIQESLSHPKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYI5</accession>
    <name>A0A0M2UYI5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">BFN domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01740</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000181">
        <property type="protein sequence ID" value="KKO19539.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19539">
        <property type="protein sequence ID" value="KKO19539"/>
        <property type="gene ID" value="BROFUL_01740"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2156"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.690.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036104">
        <property type="entry name" value="BFN_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003729">
        <property type="entry name" value="Bi_nuclease_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02577">
        <property type="entry name" value="DUF151"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103256">
        <property type="entry name" value="SSF103256"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51658">
        <property type="entry name" value="BFN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BFN" evidence="1">
        <location>
            <begin position="1"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51658"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19539.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="135" mass="14952" checksum="DA120B43D4C9F2DE" modified="2015-11-11" version="1">MVPMELSKIIITETSDHQIIVLKERDGQRSFPIVIGLHEAWAIDRAVKGVTTPRPLTHDLIGSIIEGLHAGIIKVVISDLRNNTFFAKIVLQQNGLLVEIDSRPSDAIAVAMQKNTPIFVATKVLEEVCKLESEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYK3</accession>
    <name>A0A0M2UYK3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative enoyl-CoA hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00372</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000047">
        <property type="protein sequence ID" value="KKO20902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20902">
        <property type="protein sequence ID" value="KKO20902"/>
        <property type="gene ID" value="BROFUL_00372"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018376">
        <property type="entry name" value="Enoyl-CoA_hyd/isom_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00166">
        <property type="entry name" value="ENOYL_COA_HYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="266" mass="29570" checksum="02C18B7C0F59DB26" modified="2015-11-11" version="1">MNRGDNSGYDHIEFEEISGDHGKAIGIISMKKPPRNSIGSWLLDAIYDKMDQYEGDGKISAIIIASKLRGVFSDGADRDELFGSWISGLVAEKNYERFKRAHEMFVEIENCKKPVIAAINGVTIGAGLELAMLCDLRVASEISFFSLPEAKLELSIIPGLGGTQRLPRFIGAARAKEMLFLGKMIRAETALEWGLINQVVPHKEVLDHAIATAKILLERDARALKEMKKCINFAGENDIVKGIEYEVGLFAEMMRLKLANKDKQDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYK5</accession>
    <name>A0A0M2UYK5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Nitrite/formate transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_00598</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the FNT transporter (TC 2.A.44) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000083">
        <property type="protein sequence ID" value="KKO20670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20670">
        <property type="protein sequence ID" value="KKO20670"/>
        <property type="gene ID" value="BROFUL_00598"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.753"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1080.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023271">
        <property type="entry name" value="Aquaporin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000292">
        <property type="entry name" value="For/NO2_transpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024002">
        <property type="entry name" value="For/NO2_transpt_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30520">
        <property type="entry name" value="PTHR30520"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01226">
        <property type="entry name" value="Form_Nir_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01005">
        <property type="entry name" value="FORMATE_NITRITE_TP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="55"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="88"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="133"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="180"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="214"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="276"/>
            <end position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="306" mass="33110" checksum="0ECE61B567654372" modified="2015-11-11" version="1">MYERGNNMSDMQNNGTNQEYALPVIEIDAYAPAKMADRVGHVGVAKSQLSTLTTLALSILAGVFIALGMQLSMLVTHTATNNYGLNQLVGGVAFTLALILIVIAGAELFTGNCLIAMSFMARKITGRDLARNLIVAFVGNFIGALTLVLWIYNSNQWTINNYLLGAKIVLAANDKVNIPFGAAFCRGVLCNALVCLGIWLCYSGRSNLDKILALLWPISCLIACGFEHCVVNMWLIPMALILKGNSSVLEAIARIHEGPADLSHLTFFHGFLINNLVPVVLGNLFGGVVLIAGAYWFVYLRPSRTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYL9</accession>
    <name>A0A0M2UYL9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Metal-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01202</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the hemerythrin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000128">
        <property type="protein sequence ID" value="KKO20076.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20076">
        <property type="protein sequence ID" value="KKO20076"/>
        <property type="gene ID" value="BROFUL_01202"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd12107">
        <property type="entry name" value="Hemerythrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012312">
        <property type="entry name" value="Hemerythrin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035938">
        <property type="entry name" value="Hemerythrin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012827">
        <property type="entry name" value="Hemerythrin_metal-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01814">
        <property type="entry name" value="Hemerythrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47188">
        <property type="entry name" value="SSF47188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02481">
        <property type="entry name" value="hemeryth_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hemerythrin" evidence="4">
        <location>
            <begin position="13"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20076.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="135" mass="16205" checksum="691300CE663B7EFB" modified="2015-11-11" version="1">MEKIMWDEGFSVGVRDLDEQHKRIVNVVNTLLDMIDAKVDSEIISDTLTKMTQYASDHFKSEEQYMLDYHYPEYPSQKKQHQEFKKKTVDFCVETMVHKATVPAEIFMYLKSWWTNHILKEDMKYKEFFHAKGLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYS9</accession>
    <name>A0A0M2UYS9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">TIR domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00307</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000035">
        <property type="protein sequence ID" value="KKO20972.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20972">
        <property type="protein sequence ID" value="KKO20972"/>
        <property type="gene ID" value="BROFUL_00307"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003953">
        <property type="term" value="F:NAD+ nucleosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019677">
        <property type="term" value="P:NAD catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000157">
        <property type="entry name" value="TIR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035897">
        <property type="entry name" value="Toll_tir_struct_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13676">
        <property type="entry name" value="TIR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52200">
        <property type="entry name" value="SSF52200"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50104">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TIR" evidence="1">
        <location>
            <begin position="1"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20972.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="248" mass="27820" checksum="53F8FACE2ED67D4D" modified="2015-11-11" version="1">MEYDIFFSYPHKDAKEVQHILQALQAEGLNVWIDKSEIRDYESITRSIVGGLAHAKVLLAYYSLNYWRSRACQWELTAGFLAAQREGDARRRILVINPEEKAGHIHPVELRDELFQKAPADAEALRKLVQSVKAHVSGIKNTIGAIYALTQPRWYGRKGAGSNRFVGRLPDMWRIHSALHSSGVPVITGAVASAVVQVQGMGGVGKSLLAEEYAFAMQRHFQAVCFGSGRWGTMIQKLQWERSVRQST</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYX6</accession>
    <name>A0A0M2UYX6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01596</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19664.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19664">
        <property type="protein sequence ID" value="KKO19664"/>
        <property type="gene ID" value="BROFUL_01596"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1975"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03255">
        <property type="entry name" value="ABC_MJ0796_LolCDE_FtsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017911">
        <property type="entry name" value="MacB_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="8"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="44"/>
            <end position="51"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19664.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="233" mass="25523" checksum="AD9751C1E735ABDE" modified="2015-11-11" version="1">MKDKPPLVEIKNLNKSYRRGNQVVPVLENITFDIAEGEFLALMGPSGSGKSTLLNLIAGIDKSDSGIITVGGVDIAALSETELAQWRAANVGFIFQFYNLIPVLTAFGNVELPLLLTRLSRKERREHAEAALQMVNLSDRLHHYPSQLSGGQQQRVAIARAIVTDPTILVADEPTGDLDRVSANEILELIGRLNTELGKTIIMVTHDPHAAEKAHLIKHLEKGIFNASLQDHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ71</accession>
    <name>A0A0M2UZ71_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cytochrome c</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_01006</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000119">
        <property type="protein sequence ID" value="KKO20261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20261">
        <property type="protein sequence ID" value="KKO20261"/>
        <property type="gene ID" value="BROFUL_01006"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00034">
        <property type="entry name" value="Cytochrom_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0349">Heme</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="36"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="6">
        <location>
            <begin position="162"/>
            <end position="247"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="256" mass="29462" checksum="4996650009C6B5B2" modified="2015-11-11" version="1">MAVLRYVIWYQEGRLHVPSIKYEDVEMNNQRRSDRFFLSFMIILPLFLTVTNIAFVNAAENKTLTKEDRVAMGNHLFETKQCSYCHNSENIKKEQVPDLERWKELSSPVLWAAIMWNHVPEMVKAFTEAKKGIPKFENDELIYIFESLNTASEKHAQIKFTGNASRGSFLFSYLGCKVCHSINGEGGRVGPSLSGIAKNGGDVLRFASQLLSHAPYMCDKIEMQNMYWPMLQGNEIAHLFEYFKSVSNSVELRRSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ85</accession>
    <name>A0A0M2UZ85_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Fatty acid hydroxylase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00985</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000118">
        <property type="protein sequence ID" value="KKO20276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20276">
        <property type="protein sequence ID" value="KKO20276"/>
        <property type="gene ID" value="BROFUL_00985"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1234"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008610">
        <property type="term" value="P:lipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006694">
        <property type="entry name" value="Fatty_acid_hydroxylase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04116">
        <property type="entry name" value="FA_hydroxylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="53"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="94"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="148"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="257"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="domain" description="Fatty acid hydroxylase" evidence="2">
        <location>
            <begin position="95"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="325" mass="37323" checksum="1A3430767B6CB326" modified="2015-11-11" version="1">MNMSAFVLSHEVLIRLGAFFGVLAIMTLWELIAPRRTLTAPKMLRWMNNLGITFLNSFLLRIIFPAAAAGMATFAQKHGWGIFNYFRLPHSMVVVVSVIIMDFAIYLQHVMFHAVPVFWRMHRMHHADPDIDVTTGVRFHPFEIILSMLIKFAVIAALGTPVLAVVVFEVTLNATSLFNHGNVRILRSVDSVLRWFMVTPDMHRVHHSMEGYETNSNFGFNLPWWDRWLGTYRAQPRMGHEGMAIGLRDFQDTKRCITLPGMLAIPFIGKVTAYAITSRTWRNQKMAINLMRSRFVISDRESAALRFQEPYQGKSFSFNDDKSLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ87</accession>
    <name>A0A0M2UZ87_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Protein HflC</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00990</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">HflC and HflK could regulate a protease.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the band 7/mec-2 family. HflC subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000118">
        <property type="protein sequence ID" value="KKO20281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20281">
        <property type="protein sequence ID" value="KKO20281"/>
        <property type="gene ID" value="BROFUL_00990"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1240"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052547">
        <property type="term" value="P:regulation of peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03405">
        <property type="entry name" value="SPFH_HflC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001107">
        <property type="entry name" value="Band_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036013">
        <property type="entry name" value="Band_7/SPFH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010200">
        <property type="entry name" value="HflC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42911">
        <property type="entry name" value="PTHR42911"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01145">
        <property type="entry name" value="Band_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005651">
        <property type="entry name" value="HflC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00244">
        <property type="entry name" value="PHB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117892">
        <property type="entry name" value="SSF117892"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01932">
        <property type="entry name" value="hflC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PHB" evidence="3">
        <location>
            <begin position="22"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR005651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="320" mass="37023" checksum="D934D2F01847186C" modified="2015-11-11" version="1">MKKAAIIIALIVVASVIICLKASLYVVDVRQQAVITQFGRPVKTVTDPGLCVKTPFIQEVRYFDKRLLEWSGEPSDILTRDKENIGVGAWARWKISESLKFYTSLGTEERGMRVLDEVIESAVKNVVSSYTLKEVLRNSNRKLEYTTKELEEAEDIKKVQIIMGRDKISEEIKKMALRALEGRYGIELIDVRIKYINYVEAVIPKIYDRMRSERIRIANKYESEGRKEEAEILGSMKRELERIESEGYRTAEEIKGQADAEAVKIYAEAYEKAPEFYSFTKTLQTYETTFDKQTHLILTTDGDYFQYLKSFRQEGKRGQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZD5</accession>
    <name>A0A0M2UZD5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00089</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000009">
        <property type="protein sequence ID" value="KKO21182.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21182">
        <property type="protein sequence ID" value="KKO21182"/>
        <property type="gene ID" value="BROFUL_00089"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="24"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="26"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21182.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="72" mass="8416" checksum="D36FF143BD2C96C3" modified="2015-11-11" version="1">MLLPRKGYADSATAIAEIQDNRSTCQKQWENRKKDSTREYNPPTLRMNRKTSFYPLLHFSAFPYNGLAFSDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZZ7</accession>
    <name>A0A0M2UZZ7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Transcription antitermination protein NusB</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Antitermination factor NusB</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">nusB</name>
        <name evidence="8" type="ORF">BROFUL_01169</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the NusB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000126">
        <property type="protein sequence ID" value="KKO20094.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20094">
        <property type="protein sequence ID" value="KKO20094"/>
        <property type="gene ID" value="BROFUL_01169"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1448"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006353">
        <property type="term" value="P:DNA-templated transcription, termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031564">
        <property type="term" value="P:transcription antitermination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.940.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00073">
        <property type="entry name" value="NusB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035926">
        <property type="entry name" value="NusB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011605">
        <property type="entry name" value="NusB_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006027">
        <property type="entry name" value="NusB_RsmB_TIM44"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004013">
        <property type="entry name" value="PHP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003141">
        <property type="entry name" value="Pol/His_phosphatase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016195">
        <property type="entry name" value="Pol/histidinol_Pase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01029">
        <property type="entry name" value="NusB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02811">
        <property type="entry name" value="PHP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00481">
        <property type="entry name" value="POLIIIAc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48013">
        <property type="entry name" value="SSF48013"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89550">
        <property type="entry name" value="SSF89550"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01951">
        <property type="entry name" value="nusB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5 6" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 6" id="KW-0889">Transcription antitermination</keyword>
    <keyword evidence="4 6" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="POLIIIAc" evidence="7">
        <location>
            <begin position="158"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005952"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20094.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="427" mass="47837" checksum="1B784D3BF3F4FDBE" modified="2015-11-11" version="1">MRNRTIARELAIQALYQLDLRGDEILGEIESFCKRSTEKHDVYQFAIALTNGCRSHLKEIDEKISMVTEHWELRRMAIIDKNILRLGVYELLYRNDIPPKVSINEAIELAKKFSTKNSGTFVNGILDKIYTQGGDGKVKGEACPPPLQNVSEVQYGNADLHIHTNYSDGTMTPEEVVDDALRRGVSTISITDHDTVDGLVIALRYGQGKNIHIISGIEFSSYLSPSEVHILGYFIDVNNISLQKMIRQSRDDRVNRIHDMVDKLHALHVDIDAQEILALAGQGSPGRMHVAETLWKHGYCATIIESFTKYIGDNKPAYVPKKTLTSQQAIELIRDAGGVAVLAHPGLTQRDHIIGDLVQYGLQGIEVYYPSHSPQTVRKYLKVAKKYDLAVTGGSDFHGERRLDCPIAKITIPGDLVDKLRQRCPAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V025</accession>
    <name>A0A0M2V025_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Nitrogen regulatory protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00044</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the P(II) protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000007">
        <property type="protein sequence ID" value="KKO21205.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21205">
        <property type="protein sequence ID" value="KKO21205"/>
        <property type="gene ID" value="BROFUL_00044"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.57"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030234">
        <property type="term" value="F:enzyme regulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006808">
        <property type="term" value="P:regulation of nitrogen utilization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002187">
        <property type="entry name" value="N-reg_PII"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011322">
        <property type="entry name" value="N-reg_PII-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015867">
        <property type="entry name" value="N-reg_PII/ATP_PRibTrfase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017918">
        <property type="entry name" value="N-reg_PII_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30115">
        <property type="entry name" value="PTHR30115"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00543">
        <property type="entry name" value="P-II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00340">
        <property type="entry name" value="PIIGLNB"/>
    </dbReference>
    <dbReference type="SMART" id="SM00938">
        <property type="entry name" value="P-II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54913">
        <property type="entry name" value="SSF54913"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00638">
        <property type="entry name" value="PII_GLNB_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51343">
        <property type="entry name" value="PII_GLNB_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="modified residue" description="O-UMP-tyrosine" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR602187-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO21205.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="112" mass="12550" checksum="F6CFC1140BF54453" modified="2015-11-11" version="1">MKKIVAIVREDRFTMVKDALLDIGYPGMTVTEVKGHGHQKGITEQWRGRTYKTDLLKKIQMEMVVADRDVDTIVQCIVKEAKTGNIGDGKIFISSVDDVVRVRTGERGETAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V045</accession>
    <name>A0A0M2V045_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00025</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the cysteine dioxygenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000006">
        <property type="protein sequence ID" value="KKO21230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21230">
        <property type="protein sequence ID" value="KKO21230"/>
        <property type="gene ID" value="BROFUL_00025"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016702">
        <property type="term" value="F:oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010300">
        <property type="entry name" value="CDO_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12918">
        <property type="entry name" value="PTHR12918"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05995">
        <property type="entry name" value="CDO_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="2">
        <location>
            <position position="76"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="78"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="127"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006622"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR610300-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO21230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="173" mass="19718" checksum="7AE38DABD0D3885B" modified="2015-11-11" version="1">MDINLRAFINRLESLPDNPSHDGLKKCLREMDGRQVSIDEYVNFSEQGYKRNVVHVSSRCEISVLCFQTGQHTPIHDHGDSIGVTIIRQGTMTEELFDRQPTGMIVSTFTRRFQTEEFSCVNLTTIHRVSNAHSEGLVMINIYFPPLTVMNFYNLENASVEKWVADYSGVKGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V055</accession>
    <name>A0A0M2V055_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00715</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20596">
        <property type="protein sequence ID" value="KKO20596"/>
        <property type="gene ID" value="BROFUL_00715"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="46" mass="5366" checksum="712DBA40996E13D6" modified="2015-11-11" version="1">MMRRGRRSTQRSLADGICIGKTGKKEIKLACENESFYGIFDEWRKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V077</accession>
    <name>A0A0M2V077_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Putative 6-phosphogluconate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_00669</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 6-phosphogluconate dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000088">
        <property type="protein sequence ID" value="KKO20606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20606">
        <property type="protein sequence ID" value="KKO20606"/>
        <property type="gene ID" value="BROFUL_00669"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.852"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004616">
        <property type="term" value="F:phosphogluconate dehydrogenase (decarboxylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019521">
        <property type="term" value="P:D-gluconate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016054">
        <property type="term" value="P:organic acid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006098">
        <property type="term" value="P:pentose-phosphate shunt"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002204">
        <property type="entry name" value="3-OH-isobutyrate_DH-rel_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006114">
        <property type="entry name" value="6PGDH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006115">
        <property type="entry name" value="6PGDH_NADP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006183">
        <property type="entry name" value="Pgluconate_DH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11811">
        <property type="entry name" value="PTHR11811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00393">
        <property type="entry name" value="6PGD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03446">
        <property type="entry name" value="NAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00076">
        <property type="entry name" value="6PGDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00895">
        <property type="entry name" value="3_HYDROXYISOBUT_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0311">Gluconate utilization</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD_binding_2" evidence="5">
        <location>
            <begin position="10"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="domain" description="6PGD" evidence="4">
        <location>
            <begin position="193"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008419"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023064"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00393"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF03446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="260" mass="27818" checksum="02307D034B99906A" modified="2015-11-11" version="1">MILGRRIVMQLGMIGLGRMGGNMVRRLMRAGHEVVVYSATAKTREAFAKETGAFAAASIQELVARLRPPRVVWLMVPAAAVDATLKEVVGLVHKGDILIDGGNSYYIDDIRRAKELAPQGIHYVDCGTSGGVWGLERGYCLMIGGPKETVRYLDPIFKSLAPGTGTVPKTPGREKAGGTAEEGYLHCGPAGGGHFVKMVHNGIEYGLMAAYAEGSISCGTQMLEKRIMSSMPKLRPCATLIIISTILTWLILRNCGGGEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V084</accession>
    <name>A0A0M2V084_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 6">Thiazole synthase</fullName>
            <ecNumber evidence="4 6">2.8.1.10</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">thiG</name>
        <name evidence="8" type="ORF">BROFUL_00013</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 6">Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>1-deoxy-D-xylulose 5-phosphate + 2-iminoacetate + [sulfur-carrier protein ThiS]-C-terminal Gly-NH-CH2-C(O)SH = 2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate + [sulfur-carrier protein ThiS]-C-terminal Gly-Gly + 2 H(+) + 2 H2O</text>
            <dbReference type="Rhea" id="RHEA:26297"/>
            <dbReference type="Rhea" id="RHEA-COMP:12908"/>
            <dbReference type="Rhea" id="RHEA-COMP:12909"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
            <dbReference type="ChEBI" id="CHEBI:62899"/>
            <dbReference type="ChEBI" id="CHEBI:77846"/>
            <dbReference type="ChEBI" id="CHEBI:90619"/>
            <dbReference type="ChEBI" id="CHEBI:90778"/>
            <dbReference type="EC" id="2.8.1.10"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 6">Cofactor biosynthesis; thiamine diphosphate biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homotetramer. Forms heterodimers with either ThiH or ThiS.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the ThiG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.8.1.10" evidence="4 6"/>
    <dbReference type="EMBL" id="LAQJ01000003">
        <property type="protein sequence ID" value="KKO21260.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21260">
        <property type="protein sequence ID" value="KKO21260"/>
        <property type="gene ID" value="BROFUL_00013"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.21"/>
    <dbReference type="UniPathway" id="UPA00060"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990107">
        <property type="term" value="F:thiazole synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009229">
        <property type="term" value="P:thiamine diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd04728">
        <property type="entry name" value="ThiG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00443">
        <property type="entry name" value="ThiG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033983">
        <property type="entry name" value="Thiazole_synthase_ThiG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008867">
        <property type="entry name" value="ThiG"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34266">
        <property type="entry name" value="PTHR34266"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05690">
        <property type="entry name" value="ThiG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0704">Schiff base</keyword>
    <keyword evidence="5 6" id="KW-0784">Thiamine biosynthesis</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="ThiG" evidence="7">
        <location>
            <begin position="17"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="region of interest" description="DXP binding" evidence="6">
        <location>
            <begin position="195"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="region of interest" description="DXP binding" evidence="6">
        <location>
            <begin position="217"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with DXP" evidence="6">
        <location>
            <position position="108"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="169"/>
        </location>
        <ligand>
            <name>1-deoxy-D-xylulose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002834"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004948"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00443"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF05690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO21260.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="264" mass="28371" checksum="989FD2F016A3E1B2" modified="2015-11-11" version="1">MLAADKIEKRIENTPLKIGRYEFTSRLFVGTGKYPSMEIMKDALEASGAEVVTVAVRRVKISETTSLLDYIDTRRYKILPNTAGCYSAEEAIRTARLAREAGMSDMIKLEVLGDEKTLLPDPVETLKATETLVKEGFTVLVYTSDDPIIARKLEDAGATSVMPAGAPIGSGQGILNKNNIRIILESAKVPVIVDAGVGTASDVSLAMELGCEGVLLNTGIALAKDPVCMAKAMRLACEAGRLAFLSGRIPKRLYAKASSPEKDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0F3</accession>
    <name>A0A0M2V0F3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Flagellar protein FlaG</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00608</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000085">
        <property type="protein sequence ID" value="KKO20661.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20661">
        <property type="protein sequence ID" value="KKO20661"/>
        <property type="gene ID" value="BROFUL_00608"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005186">
        <property type="entry name" value="FlaG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035924">
        <property type="entry name" value="FlaG-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03646">
        <property type="entry name" value="FlaG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160214">
        <property type="entry name" value="SSF160214"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0966">Cell projection</keyword>
    <keyword evidence="1" id="KW-0969">Cilium</keyword>
    <keyword evidence="1" id="KW-0282">Flagellum</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20661.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="142" mass="16613" checksum="B0B9BFEF6744FE61" modified="2015-11-11" version="1">MMFRNEDMETHDIHNLITYNAYHNFSNISVSIRKTTNAENDKSIQEIQKALSFTNTNTRNNPTQYLKSSISYIPPLLETEITMSVEKDLNIIVTTVKNKNTDKVIRQIPNEELVERLKYLKKYNNQLIFQKEKDVPTSITTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0I9</accession>
    <name>A0A0M2V0I9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF1858 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00568</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000079">
        <property type="protein sequence ID" value="KKO20701.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20701">
        <property type="protein sequence ID" value="KKO20701"/>
        <property type="gene ID" value="BROFUL_00568"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3910.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015077">
        <property type="entry name" value="DUF1858"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038062">
        <property type="entry name" value="ScdA-like_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08984">
        <property type="entry name" value="DUF1858"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140683">
        <property type="entry name" value="SSF140683"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1858" evidence="1">
        <location>
            <begin position="21"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20701.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="90" mass="10270" checksum="C810378D64122600" modified="2015-11-11" version="1">MENHEYDPGGEITGSVKLTEIAKDTKVFDIVDQYPETLQIFLDFGFSQMANPVMRKTMGRVASIEMATKMHNVDTEKFLQALNDKIRSKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0P0</accession>
    <name>A0A0M2V0P0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PINc domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00522</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000072">
        <property type="protein sequence ID" value="KKO20751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20751">
        <property type="protein sequence ID" value="KKO20751"/>
        <property type="gene ID" value="BROFUL_00522"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002716">
        <property type="entry name" value="PIN_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01850">
        <property type="entry name" value="PIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PINc" evidence="1">
        <location>
            <begin position="4"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20751.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="77" mass="9080" checksum="6B673AA772617837" modified="2015-11-11" version="1">MKTFLDTSSLIKLYHQEEGADFVMDALSNDIEEILLSELAVLEFRSALWKKIREKEIEEKVAIEVIQCFQKDRDNFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0Z0</accession>
    <name>A0A0M2V0Z0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Precorrin-4 C11-methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_00450</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the precorrin methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000059">
        <property type="protein sequence ID" value="KKO20821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20821">
        <property type="protein sequence ID" value="KKO20821"/>
        <property type="gene ID" value="BROFUL_00450"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.563"/>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046026">
        <property type="term" value="F:precorrin-4 C11-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd11641">
        <property type="entry name" value="Precorrin-4_C11-MT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014776">
        <property type="entry name" value="4pyrrole_Mease_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006362">
        <property type="entry name" value="Cbl_synth_CobM/CibF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003043">
        <property type="entry name" value="Uropor_MeTrfase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="SSF53790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01465">
        <property type="entry name" value="cobM_cbiF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00839">
        <property type="entry name" value="SUMT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00840">
        <property type="entry name" value="SUMT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6 8" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4 6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TP_methylase" evidence="7">
        <location>
            <begin position="2"/>
            <end position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="241" mass="26607" checksum="7B1812B003ACEE66" modified="2015-11-11" version="1">MKVYFIGAGPGDPELITVRGLKIIQQSQYCIYAGSLVNPELLKALPPRAKIYDSSGMSLEDMGVVYKEAREQNLDVARIHSGDPSIYGAIQEQMQVLDTLGIPYEVIPGVSSFVASAAVLRQELTLPGVTQTIVITRMEGKTPIPEKEHLSVLAAATPTLCIFLSIDKIEEIVRTLLPHYGKDCPVAVVYKATWPEQKIVCTRLAEIASEVKRQSIKKSALVIVGWTLGKEFQRSVLYRQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V175</accession>
    <name>A0A0M2V175_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00800</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000102">
        <property type="protein sequence ID" value="KKO20469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20469">
        <property type="protein sequence ID" value="KKO20469"/>
        <property type="gene ID" value="BROFUL_00800"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="41" mass="4346" checksum="D7C7C30F24D95DA8" modified="2015-11-11" version="1" fragment="single">GEIASEKALAMTATMHFDGTLHVVIASEAKQSFTHKKNGTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V191</accession>
    <name>A0A0M2V191_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Site-specific tyrosine recombinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">xerC_2</name>
        <name evidence="3" type="ORF">BROFUL_00359</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000044">
        <property type="protein sequence ID" value="KKO20926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20926">
        <property type="protein sequence ID" value="KKO20926"/>
        <property type="gene ID" value="BROFUL_00359"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tyr recombinase" evidence="2">
        <location>
            <begin position="5"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="201" mass="22858" checksum="B6B2C03C64D2F434" modified="2015-11-11" version="1">MKPKRVSEFLTEDEICAALRVPDRRTLQGKRDYALLLLMFSTGLRKAEVCSLSVADITTYRNQPVVDVMGKGEKRRRIALDRDVMEAVLDYRKALLPLTPSEGGQFLFYTLGEHGNCDVRPLTHKAVDCLLRRVKKVALIAKRITPHTTRHTFATTLLDKGVDLKTVQELLGHSHIRTTEKYLHTSDEKKMDAIARLQFAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V192</accession>
    <name>A0A0M2V192_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Nucleoside permease NupX</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">nupX_2</name>
        <name evidence="3" type="ORF">BROFUL_00776</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000099">
        <property type="protein sequence ID" value="KKO20489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20489">
        <property type="protein sequence ID" value="KKO20489"/>
        <property type="gene ID" value="BROFUL_00776"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005337">
        <property type="term" value="F:nucleoside transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008276">
        <property type="entry name" value="C_nuclsd_transpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002668">
        <property type="entry name" value="CNT_N_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10590">
        <property type="entry name" value="PTHR10590"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01773">
        <property type="entry name" value="Nucleos_tra2_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="95"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="Nucleos_tra2_N" evidence="2">
        <location>
            <begin position="6"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="117" mass="12813" checksum="35CBCAC05DBE8A6C" modified="2015-11-11" version="1">MIQGIFGLAALIGIAWTMSETRWKVRFRDIPVRLAVQFIVAAIIIRVSVFKEFFHLLSKVALSLEEATQAGTSFVFGYLGGGALPFDEKTPGSSFIFALQALPLVLVISALSSLLFY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1D3</accession>
    <name>A0A0M2V1D3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00746</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000095">
        <property type="protein sequence ID" value="KKO20524.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20524">
        <property type="protein sequence ID" value="KKO20524"/>
        <property type="gene ID" value="BROFUL_00746"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20524.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="201" mass="22784" checksum="D7EE0DDE3DF4EEBC" modified="2015-11-11" version="1">MMVMKNVFAITAVFALEMCLFALKPTYAISLELSTEQIAEAVEYGQKNKRIEISLFSKPWTICKEKGLGTATLFTPFHNIAYKARKFAVEQREFTQKNIMQAAEIGDAFTFSVTVYGDEYDFCVHYTAKLYYKDDVIQPEFEFTPDIAEASEFWPDSPSHSARLVFKFPTKDIDLNGVVTLAVVAPGGEETVFDFDLSKMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1P6</accession>
    <name>A0A0M2V1P6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative ferredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00645</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000087">
        <property type="protein sequence ID" value="KKO20609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20609">
        <property type="protein sequence ID" value="KKO20609"/>
        <property type="gene ID" value="BROFUL_00645"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.480">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027980">
        <property type="entry name" value="RACo_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041414">
        <property type="entry name" value="Raco_middle"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042259">
        <property type="entry name" value="Raco_middle_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14574">
        <property type="entry name" value="RACo_C_ter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17651">
        <property type="entry name" value="Raco_middle"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Raco_middle" evidence="3">
        <location>
            <begin position="107"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="domain" description="RACo_C_ter" evidence="2">
        <location>
            <begin position="273"/>
            <end position="534"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="362"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="363"/>
            <end position="383"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF17651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="535" mass="57914" checksum="7E3AF39E84D9F8DE" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1U3</accession>
    <name>A0A0M2V1U3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glyco_trans_4-like_N domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00591</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000082">
        <property type="protein sequence ID" value="KKO20684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20684">
        <property type="protein sequence ID" value="KKO20684"/>
        <property type="gene ID" value="BROFUL_00591"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.745"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028098">
        <property type="entry name" value="Glyco_trans_4-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13439">
        <property type="entry name" value="Glyco_transf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_trans_4-like_N" evidence="1">
        <location>
            <begin position="29"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="356" mass="40935" checksum="8D8F0CC2B9C09978" modified="2015-11-11" version="1">MAINIHLIRTQRPHWGKYSGINQFLNYVDQDKYHINIYTASDNDEDFPVRNKTIRRWLRCAVQRKGMQYYKLSDLTAEIRALRKCLYKKADIVHYMDGEHSAQYLPWLCKLPRKMRPKIVATYHQPPELLNSLTNKKVISKLDHVTVVSPEQTSYFHGLLPPDKITVILHGINVDFFRPGSTPKTGKVFRCITVGHWLRDFKTIREVAEKLVEYKDIEFHIVTSKLTGPRQTGLEGLTNVILYRDTLDDAGLLAQYQQADLLFLPLLQSTANNALLEGIACGLPVVSTYLPSVKAYLPGKEAILIKDNDPKQLADAILHLAHNPWDQRNMAQEARKRLKSWIGVISLHTMKPFIQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UP56</accession>
    <name>A0A0M2UP56_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03369</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17918.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17918">
        <property type="protein sequence ID" value="KKO17918"/>
        <property type="gene ID" value="BROFUL_03369"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17918.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="86" mass="9739" checksum="0A156D542705A15E" modified="2015-11-11" version="1">MEIDIASGFCPFKNAHYALIISMKGVFCFILQGCKMLIIHGTNSSPNIPEIIITWYMGKKFLVCHLAFYQTMFDPYVKKPRSGKGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPZ4</accession>
    <name>A0A0M2UPZ4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pyruvate carboxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03334</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000306">
        <property type="protein sequence ID" value="KKO17962.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17962">
        <property type="protein sequence ID" value="KKO17962"/>
        <property type="gene ID" value="BROFUL_03334"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17962.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="54" mass="5814" checksum="B4CE74D3C4D5A6F0" modified="2015-11-11" version="1">MQYVVSAVDRLLKGFPLVMKVEATIYAEHDGEIGLVLIGAKGRVGARNLLADSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQF0</accession>
    <name>A0A0M2UQF0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Radical SAM core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02980</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000281">
        <property type="protein sequence ID" value="KKO18323.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18323">
        <property type="protein sequence ID" value="KKO18323"/>
        <property type="gene ID" value="BROFUL_02980"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034466">
        <property type="entry name" value="Methyltransferase_Class_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01123">
        <property type="entry name" value="methyltransferase_(Class_B)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Radical SAM core" evidence="2">
        <location>
            <begin position="77"/>
            <end position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18323.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="318" mass="35813" checksum="378270D0244EB2C1" modified="2015-11-11" version="1">MPEELLRYTGADWAILGDGEVVFPQLAASLSQGEFPNQIPGVAWLDDGIFRKNTGYVTRFSDGCLVPGFHRWIDTHAYLSRLSTVPIQTKLGCHFKCVYCTYRKIEGYDYRFCNPAVVVDTIERLAGKGFRDIEFVDNVFNSPYDHALAICNGLARARPDVRLQSLELNPLFIDDDLLTAMEEAGFVGMGITVESASGVVLDGLQKGFTVEHVYHAARVVQHHNIPCLWIFMLGGPCETQDTVQETLHFAEQFIRPKDVVFFNIGIRIYPGTELEQRARKEGVLALPSREMLEPVFYLSPGLDLDWLINTLRKALVHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQK7</accession>
    <name>A0A0M2UQK7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">1-acyl-sn-glycerol-3-phosphate acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02889</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18383">
        <property type="protein sequence ID" value="KKO18383"/>
        <property type="gene ID" value="BROFUL_02889"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002123">
        <property type="entry name" value="Plipid/glycerol_acylTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01553">
        <property type="entry name" value="Acyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00563">
        <property type="entry name" value="PlsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PlsC" evidence="1">
        <location>
            <begin position="35"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="220" mass="24701" checksum="3EA0D612E13E9C50" modified="2015-11-11" version="1">MFNTIERVFSRIAFKLLGMQVKIQGIENIPKDEPVIFISNHQSMMDIKLSLAFIPTNFSFISKDTVFHVPILGAYMVASGHIPIQRTDDRKAYETLLTAIRKLSSRKSLVVFPEGTRSEDGNLGPFKRGISLIILKSGRRVVPMAIYGSNQFMPKRGWLSHPGKRYVKISFGKPLSFDNSRADREYTIHVTNTLQAEVSKLLQNAALPQPKTASLSPPPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQN6</accession>
    <name>A0A0M2UQN6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02914</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18408">
        <property type="protein sequence ID" value="KKO18408"/>
        <property type="gene ID" value="BROFUL_02914"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="62" mass="7053" checksum="170FFB10B6CF5534" modified="2015-11-11" version="1">MSIINKTRTYLGSLLTVAGGAGAIMAGAYIFSRIREKHEKEARLERIEQILQKLTEEMEKEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQW7</accession>
    <name>A0A0M2UQW7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03051</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000283">
        <property type="protein sequence ID" value="KKO18262.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18262">
        <property type="protein sequence ID" value="KKO18262"/>
        <property type="gene ID" value="BROFUL_03051"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3766"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023614">
        <property type="entry name" value="Porin_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010870">
        <property type="entry name" value="Porin_O/P"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07396">
        <property type="entry name" value="Porin_O_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="44"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18262.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="464" mass="53834" checksum="DFB5DA0BE28EE250" modified="2015-11-11" version="1">MGRKWRRLVVLSALVIGDVFAGSMLPGVFAQQTAQTEEISGSERDYLQWQLKQMEEAFQKQQEQIQALKRRVEALTDEKPPVTREEIKHEIEDYLSTDEARKKMALGMPAMTTLYTPDEEKFSIGFKSADDNYSLGIGLRMQFRYTYKDRNEDVGRDDTNNMDVRRARLCFGGNIYSKMTHYYVEFDGDSFDVGVRDFYVYWTPMSELNAKLGYFKVPFNQQRMSTSAKLLFQDRAITSEEFDQDRDYGFDIYGKPFDGHLEYHAAMFQGAGEDDEDRGSEDNLDNELMYVFNVRYNPFGKYDTVDETDIKFTEKFKASVAASVVVNPKERDEKLEDTDGLQGVLELSMKYRGFSWHNEYFMRSADPEHGGDSFDSNGFFSQAGYFVIPKRLEVAARYSYLDRDKDVSDDIGREYSGGINYYFRPGVHRSKLQADVGHYENSDERGREQSGSENQVRLQYQIIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR29</accession>
    <name>A0A0M2UR29_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02979</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000281">
        <property type="protein sequence ID" value="KKO18322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18322">
        <property type="protein sequence ID" value="KKO18322"/>
        <property type="gene ID" value="BROFUL_02979"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3685"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012328">
        <property type="entry name" value="Chalcone/stilbene_synt_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013601">
        <property type="entry name" value="FAE1_typ3_polyketide_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011141">
        <property type="entry name" value="Polyketide_synthase_type-III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11877">
        <property type="entry name" value="PTHR11877"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02797">
        <property type="entry name" value="Chal_sti_synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08392">
        <property type="entry name" value="FAE1_CUT1_RppA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAE" evidence="3">
        <location>
            <begin position="28"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="domain" description="Chal_sti_synt_C" evidence="2">
        <location>
            <begin position="206"/>
            <end position="310"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02797"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="315" mass="34354" checksum="4A17A9CE3EE56205" modified="2015-11-11" version="1">MGSVAVTTPPYRVSQAHAEEFLVRAYADKLSKKNLAILRKIFAHPSVVHRHLALDDLKGLIHEHPDNRIARFTRWAVDLSSQAILKALTPVGLTPDDVSGLVVNTCTGYICPGISTYLIEKLRMSDKTRAHDLVGSGCGGGIPNLQICEDMAKSSDNGVIVGVSVEICSATYQMADDLSLIISNALFADGASASVLWRRSEGLELIASASYYKPESRDDIRYIYKNGQLRNQLSVSLPELAGKAVTRVITDLLKPRGLAPKDIQHWAFHPGGERVINAIRDEIGLPEGQLQATRSVLAKFGNMSSPTVFLCCVRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR32</accession>
    <name>A0A0M2UR32_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02755</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000258">
        <property type="protein sequence ID" value="KKO18548.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18548">
        <property type="protein sequence ID" value="KKO18548"/>
        <property type="gene ID" value="BROFUL_02755"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071586">
        <property type="term" value="P:CAAX-box protein processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003675">
        <property type="entry name" value="Rce1-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02517">
        <property type="entry name" value="Rce1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="61"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="105"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="137"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="195"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="220"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="246"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="284"/>
            <end position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18548.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="319" mass="36310" checksum="9E4B3F746B05720F" modified="2015-11-11" version="1">MNSWSGLKQYNKIFLLFFLVLVLSSLLAPLIKAILDTLLTSSPFIKSLLNFKQESYDFGRVMRRIMMAVAILLIFFLRKPLKIGSLIMSGIKPIRGWRKQLQTGFLLGTGMFVIYVAILWLSGIQTFRPDTRSFADIVVRLLTLILIAGLVGGIEELLFRGFIFQSMLVDMRAVSAIAISSLFFSSLHFFKVKYLVSSGIQPFIGFIIIYQSFKYIVIDFVAIWPALIGLFLVGAVLSYSCLRTKSLYLAIGLHAGWVFLMKTNKLLFDHHAGKHFEWLFGDHYIVTGVLGWIFLLFTFILIRFITKATYHGKDPARAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR89</accession>
    <name>A0A0M2UR89_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Divalent cation tolerance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">cut</name>
        <name evidence="2" type="ORF">BROFUL_02893</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CutA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18387.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18387">
        <property type="protein sequence ID" value="KKO18387"/>
        <property type="gene ID" value="BROFUL_02893"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010038">
        <property type="term" value="P:response to metal ion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004323">
        <property type="entry name" value="Ion_tolerance_CutA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011322">
        <property type="entry name" value="N-reg_PII-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015867">
        <property type="entry name" value="N-reg_PII/ATP_PRibTrfase_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23419">
        <property type="entry name" value="PTHR23419"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03091">
        <property type="entry name" value="CutA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54913">
        <property type="entry name" value="SSF54913"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18387.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="117" mass="13457" checksum="56867AF1D999D9B5" modified="2015-11-11" version="1">MQKTIVIFITTSSQDEAKKIGQILREENLIACCNIVPSIESIFTWQGRTLHEKETLMICKTREDLFDAVEKRVRQLHSYEVPEIIALPIIQGSKDYLDWVAQETKTITETEGTETTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URN6</accession>
    <name>A0A0M2URN6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02771</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000263">
        <property type="protein sequence ID" value="KKO18532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18532">
        <property type="protein sequence ID" value="KKO18532"/>
        <property type="gene ID" value="BROFUL_02771"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="SSF51126"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="187" mass="19916" checksum="92D4C6B40B1C4465" modified="2015-11-11" version="1" fragment="single">MTINKKSRTTPSLLSAMVFICAVFMVTLCGTGVTYGLTHSSNITSDETWYAADNPHIVTGGIHVYNNATLKIEAGCLVKFDPGAVLYIGYYSGAALNATGTSLNPITFTSNASTPAAGDWLGIVFFNSTVDSSTIMDYCTVEYGGYSSYNSNIYCDNASPTIQHCTIRHSDGYGIYCDNGSAPTLTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URQ6</accession>
    <name>A0A0M2URQ6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Universal stress protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02533</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal stress protein A family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18753.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18753">
        <property type="protein sequence ID" value="KKO18753"/>
        <property type="gene ID" value="BROFUL_02533"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015995">
        <property type="term" value="P:chlorophyll biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015979">
        <property type="term" value="P:photosynthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.550">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013580">
        <property type="entry name" value="LI-POR_suB-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042298">
        <property type="entry name" value="P-CP_red_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006015">
        <property type="entry name" value="Universal_stress_UspA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006016">
        <property type="entry name" value="UspA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08369">
        <property type="entry name" value="PCP_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00582">
        <property type="entry name" value="Usp"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01438">
        <property type="entry name" value="UNVRSLSTRESS"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Usp" evidence="2">
        <location>
            <begin position="1"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="domain" description="Usp" evidence="2">
        <location>
            <begin position="168"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="domain" description="PCP_red" evidence="3">
        <location>
            <begin position="389"/>
            <end position="433"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008791"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18753.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="445" mass="49875" checksum="40914AD8F8CCE4CE" modified="2015-11-11" version="1">MYKKIFVAVDNSCYSNFCIDAGVALSQKYGSLLVGCHVYDAALHQRRFRDMEKGLPPQYQDENVLQHQRDLHSSLINLGLKLISESYLNVFKQKCMEMAVPHEQLLLEGKNYHEIINEVQRNRYDLVILGVLGLAAVNEQMIGSVCERVVRRIKTDVLVVKNNGFDGKVVVAVDGSLASFAGFASAIQFAKSFNVKLVAVSVFDPHYHRVAFESIANVLSQEAGQIFRFKEQETLHEEIIDKGLAKIYQNHLDRAARMASDAGVELDTVLMEGKPYDKILRFLQKENPSTVIVGRTGIHNTNGLDLGSTTENLLRLAPCNVLLTGGNAEAEVNEPNGFLEFHRPLNEKKYASVTNTLESPHSADGFARVVKSDQKISDKHQIKRQIPVWTQEAQIQTERIPSFVRGVVKKKIEEFAQEKGYQEITTQIVDEAKALFMGDSSIHSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URX8</accession>
    <name>A0A0M2URX8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">RNA polymerase sigma 70 subunit RpoD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_02489</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18828">
        <property type="protein sequence ID" value="KKO18828"/>
        <property type="gene ID" value="BROFUL_02489"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3092"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000943">
        <property type="entry name" value="RNA_pol_sigma70"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009042">
        <property type="entry name" value="RNA_pol_sigma70_r1_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007624">
        <property type="entry name" value="RNA_pol_sigma70_r3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007630">
        <property type="entry name" value="RNA_pol_sigma70_r4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00140">
        <property type="entry name" value="Sigma70_r1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04539">
        <property type="entry name" value="Sigma70_r3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04545">
        <property type="entry name" value="Sigma70_r4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00046">
        <property type="entry name" value="SIGMA70FCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00716">
        <property type="entry name" value="SIGMA70_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0731">Sigma factor</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="RNA_pol_sigma70" evidence="5">
        <location>
            <begin position="448"/>
            <end position="474"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS00716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="493" mass="57458" checksum="DC844FAAD253DD2E" modified="2015-11-11" version="1">MNAFEYKIDHLTDEAYENYAAEDELNEGEALKEQIKYKDYDPVRLYLKEMANLPLLSREEELYLAKKIKIMSRLLHRRVLGFDYGLEKYVNILEQLDSESDLVQFVETSATRDQSKNEMVERIHGVARKIKDTLERNQTDYVKMQKQSVSKNMKARILKKIVARKRIAVKELEAVHIRAETILPVMRDLLDILEKVVACKGSAKGSVYKKKMHGKCLYYAYDIKLLSMRAIRETEKVIFAIKSINNEYESARNRFSEGNLRLVVSIAKRYRKRGLVFHDLIQEGNTGLMRAVDKYDYRMGFKFSTYATWWIKQAIIRAIDDKARTVRIPVHMTDVINKTNMVLKASQGDLERKPKIEAIAKEAKIPISEVYRVFRIASQPISLESPIGESGETMFEDFIQDKKTESPVTNAHKTLLKDQLEKVLNTLSYREREVIKLRFGISDGYTHTLEEIGERFNITRERIRQIESVAIRKLQHPLRSRKLEGFIEGVMTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US03</accession>
    <name>A0A0M2US03_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02881</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000271">
        <property type="protein sequence ID" value="KKO18425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18425">
        <property type="protein sequence ID" value="KKO18425"/>
        <property type="gene ID" value="BROFUL_02881"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="62" mass="7096" checksum="D3E13414611C5BA8" modified="2015-11-11" version="1">MKISIESKTRIKMIPESKHEEENLESLWKILIRCETDSKVLCPIGSYVASQDDGANFVIQDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USJ3</accession>
    <name>A0A0M2USJ3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02256</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000223">
        <property type="protein sequence ID" value="KKO19033.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19033">
        <property type="protein sequence ID" value="KKO19033"/>
        <property type="gene ID" value="BROFUL_02256"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025427">
        <property type="entry name" value="DUF4160"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13711">
        <property type="entry name" value="DUF4160"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19033.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="79" mass="9370" checksum="15ECA60DED8A67CC" modified="2015-11-11" version="1">MSPAIFKYKSYWLYFFSKEEARVNIHVKYPNGGAKFWLEPIVALANNYGLSPKQLNEIQKFIKEKADEITEAWENYFKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USV3</accession>
    <name>A0A0M2USV3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02319</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18927.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18927">
        <property type="protein sequence ID" value="KKO18927"/>
        <property type="gene ID" value="BROFUL_02319"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="272"/>
            <end position="291"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18927.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="421" mass="47562" checksum="29535485A8A8E9D2" modified="2015-11-11" version="1">MKIPFVNMFSQRAMGISLCGNDLIITTIWKKLIACSHETVKVKDFMFKDALQLKHAFLPKENFTGDIILSLPREFSIVREIEYPHANLKELRDALAYQLDSFIPFRNEDVYFDIHSLSHSRQNAKVLIIAMKKEELDNVLSRLQALGITPTRVIITPFAFLPIIEEKMGFIVLVSKTARSYSYNLYENNCLVLSSLVKTETELAHQIQTVLPEEILLENVSKDIVPQESKIPTQLLDEYLESYGAAQYGLSEYPCNLSLISSARKRLNPQTVLMFVFMGFLICFAFLIPYIRKVNNLAMLETVNAQIRAIKRDVSVVEKLQERIAVLDKAVSNILEVKGTYIPRIDVILELAKDLPGNAWAKAVTIVDDTFEVEGDAVSSTNLIPILENSPLFSGVGLASPVTKTQSGREKFRIKGNIKKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT23</accession>
    <name>A0A0M2UT23_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Pyruvate:ferredoxin-oxoacid:ferredoxin oxidoreductase delta subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_03180</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18131.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18131">
        <property type="protein sequence ID" value="KKO18131"/>
        <property type="gene ID" value="BROFUL_03180"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12838">
        <property type="entry name" value="Fer4_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="2"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="38"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18131.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="67" mass="7500" checksum="A029CC75719A3761" modified="2015-11-11" version="1">MAVIKIKENYCKGCLLCVPVCHNKAFVISDTINEQGLHPVKFREDAECDGCKKCAIMCPDVAIEIYH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTA6</accession>
    <name>A0A0M2UTA6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ribosomal protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02007</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000202">
        <property type="protein sequence ID" value="KKO19293.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19293">
        <property type="protein sequence ID" value="KKO19293"/>
        <property type="gene ID" value="BROFUL_02007"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2498"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd16377">
        <property type="entry name" value="23S_rRNA_IVP_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1440.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012657">
        <property type="entry name" value="23S_rRNA-intervening_sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036583">
        <property type="entry name" value="23S_rRNA_IVS_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38471">
        <property type="entry name" value="PTHR38471"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05635">
        <property type="entry name" value="23S_rRNA_IVP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158446">
        <property type="entry name" value="SSF158446"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02436">
        <property type="entry name" value="TIGR02436"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19293.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="121" mass="14068" checksum="6ABAE5908D92525C" modified="2015-11-11" version="1">MRHYRDLVVWQKSMVLVTNVYSITRLLPKEELYGLVSQIRRSAVSIPSNIAEGYGRYSTNDYVRFLQIAIGSLYELQTQLEICLNLGYLSKEHFEKIYEQSREIERMLSSLIKKVGNCLGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTD8</accession>
    <name>A0A0M2UTD8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Restriction endonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01988</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19328.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19328">
        <property type="protein sequence ID" value="KKO19328"/>
        <property type="gene ID" value="BROFUL_01988"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2474"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009036">
        <property type="term" value="F:type II site-specific deoxyribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.91.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011338">
        <property type="entry name" value="BamHI/BglII/BstY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015278">
        <property type="entry name" value="BglII"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09195">
        <property type="entry name" value="Endonuc-BglII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19328.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="196" mass="22608" checksum="308E8ACB2F6145D8" modified="2015-11-11" version="1">MSVDQLPKFIKEHYEIHEWRHAMAILRHDFTSEYGDICDVLTRFRLRKSWITIGGGRKSKVADWIDVELLQKGWKPKNFDTKITVDEKVMESPTHEVDCFKNRVALEIEWNNKDPFFDRDLNNFRLLFDLRAISVGVIITRCDELQEIFDSLGRGASYGASTTHMSKLLPRIQGGGGAGCPLLVFGIRRNLYAEDC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTI3</accession>
    <name>A0A0M2UTI3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">UPF0102 protein BROFUL_03028</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03028</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the UPF0102 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18301">
        <property type="protein sequence ID" value="KKO18301"/>
        <property type="gene ID" value="BROFUL_03028"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00048">
        <property type="entry name" value="UPF0102"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011856">
        <property type="entry name" value="tRNA_endonuc-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003509">
        <property type="entry name" value="UPF0102"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34039">
        <property type="entry name" value="PTHR34039"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02021">
        <property type="entry name" value="UPF0102"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00252">
        <property type="entry name" value="TIGR00252"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="151" mass="17403" checksum="10514620F1FD5E78" modified="2015-11-11" version="1">MQLFCAKYVTSFIQLFKQKIAETPHTRSKGAQGELLAIKFLKKKGYTILQRNYRRRNGEIDVICYDRGTIVFVEVKTRHSDTYGPPELSVTEAKRRQIVKVASHYVANKKIEGIDLRFDVVSIFYPPDKKQPTITLFSNAFTKSNTALVRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTI9</accession>
    <name>A0A0M2UTI9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02322</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18930">
        <property type="protein sequence ID" value="KKO18930"/>
        <property type="gene ID" value="BROFUL_02322"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012902">
        <property type="entry name" value="N_methyl_site"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07963">
        <property type="entry name" value="N_methyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02532">
        <property type="entry name" value="IV_pilin_GFxxxE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="144"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="151"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="165" mass="18571" checksum="CA552C5248A47DB7" modified="2015-11-11" version="1">MGTTRGEDDNGFTILEVMVALAIVGVSIGIFFSLIGNSSRLREKIDRHAELVLFARTKTEEAFLEMLGKKEEKGEKEKTFEGVTKSGLQWKITEVDKYEEAMDPIDFYKKVTDKNFQEIPPKGTTLLSTLVGEICIETVFFSKESDSVSETLESEDREEEEPSAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTP9</accession>
    <name>A0A0M2UTP9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative (3R)-hydroxymyristoyl-(Acyl-carrier-protein) dehydrase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02279</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO18985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18985">
        <property type="protein sequence ID" value="KKO18985"/>
        <property type="gene ID" value="BROFUL_02279"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2842"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013114">
        <property type="entry name" value="FabA_FabZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30272">
        <property type="entry name" value="PTHR30272"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07977">
        <property type="entry name" value="FabA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="138" mass="15380" checksum="315EFCBFEF75C4C5" modified="2015-11-11" version="1">MTVPYPSPRTALPHSYPFLLIDRILDLDEGKRIVCLKNVTINEEFFQGHFKDNPVMPGSLIIEAMAQTSGLMIVKEKSSMAYLGKIKDAKFRKMVVPGDQLIITSSLIDKFPPFYTFEVIASVGSEIVSEAEIILSLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTQ6</accession>
    <name>A0A0M2UTQ6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01832</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000190">
        <property type="protein sequence ID" value="KKO19453.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19453">
        <property type="protein sequence ID" value="KKO19453"/>
        <property type="gene ID" value="BROFUL_01832"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001440">
        <property type="entry name" value="TPR_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00515">
        <property type="entry name" value="TPR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0802">TPR repeat</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="103"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="164"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="180"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="250"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="271"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19453.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="309" mass="36851" checksum="0AA4829C506B5553" modified="2015-11-11" version="1">MTGILNKKRRMHTSGFFVRVFLVLVSLGWIDPLADKVREGNELYHRGAYDEALDKYVNAQIDSPQISQLDFNIADTQYQRKKYDEAAQWFDKVVQSGSPEMQAKASFNMGNTLYRQGKMKEAMEYYKKAVDFADDLKHKGNESIDTLKNDARYNYEYVERKIKENEQKQQQQQQQAEEDKKNQNQNDQQQKQQDDKDNKEDQRQKENKDEKKENDESQQDQQQPRPEDTPKNDKHSEENRQDQSDTDKQKEQQTQQQQQSQSQQPQGQRQMSKEEAERFLDALDHAEKETRQMMRDKQRLQHKSVEKDW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTS3</accession>
    <name>A0A0M2UTS3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02892</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18386">
        <property type="protein sequence ID" value="KKO18386"/>
        <property type="gene ID" value="BROFUL_02892"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="170" mass="19517" checksum="941F3C7C965B2524" modified="2015-11-11" version="1">MALFRNMDQMHYPDTNRIGNRRLVFIYAKEAKGYNQLMTRFIVLFIAAYVVYTIVKKSLKRTPSGNDAQQRTDKKSQPVVTHLKEIAYVCYSAANDDDTCDVCREFDGRHMLPNHKILQRVKPPHAGCKSPKGCRCTLVYVTRDEDGSSEVESLLKKHGGMCDRQTIERN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTT8</accession>
    <name>A0A0M2UTT8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Isoamylase</fullName>
            <ecNumber evidence="5">3.2.1.68</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02071</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyl hydrolase 13 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.68" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000208">
        <property type="protein sequence ID" value="KKO19227.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19227">
        <property type="protein sequence ID" value="KKO19227"/>
        <property type="gene ID" value="BROFUL_02071"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2582"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004133">
        <property type="term" value="F:glycogen debranching enzyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019156">
        <property type="term" value="F:isoamylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005980">
        <property type="term" value="P:glycogen catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02856">
        <property type="entry name" value="E_set_GDE_Isoamylase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044505">
        <property type="entry name" value="GlgX_Isoamylase_N_E_set"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006047">
        <property type="entry name" value="Glyco_hydro_13_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004193">
        <property type="entry name" value="Glyco_hydro_13_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011837">
        <property type="entry name" value="Glycogen_debranch_GlgX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014756">
        <property type="entry name" value="Ig_E-set"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00128">
        <property type="entry name" value="Alpha-amylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02922">
        <property type="entry name" value="CBM_48"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00642">
        <property type="entry name" value="Aamy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81296">
        <property type="entry name" value="SSF81296"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02100">
        <property type="entry name" value="glgX_debranch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="2 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aamy" evidence="4">
        <location>
            <begin position="168"/>
            <end position="575"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="473"/>
            <end position="500"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19227.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="705" mass="79257" checksum="3ABD3D41CBE037EE" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU11</accession>
    <name>A0A0M2UU11_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Malonyl CoA-acyl carrier protein transacylase</fullName>
            <ecNumber evidence="3">2.3.1.39</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01967</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 3">
            <text>holo-[ACP] + malonyl-CoA = CoA + malonyl-[ACP]</text>
            <dbReference type="Rhea" id="RHEA:41792"/>
            <dbReference type="Rhea" id="RHEA-COMP:9623"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57384"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="ChEBI" id="CHEBI:78449"/>
            <dbReference type="EC" id="2.3.1.39"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the fabD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.39" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19307.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19307">
        <property type="protein sequence ID" value="KKO19307"/>
        <property type="gene ID" value="BROFUL_01967"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2450"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004314">
        <property type="term" value="F:[acyl-carrier-protein] S-malonyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.366.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001227">
        <property type="entry name" value="Ac_transferase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014043">
        <property type="entry name" value="Acyl_transferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016035">
        <property type="entry name" value="Acyl_Trfase/lysoPLipase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024925">
        <property type="entry name" value="Malonyl_CoA-ACP_transAc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004410">
        <property type="entry name" value="Malonyl_CoA-ACP_transAc_FabD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016036">
        <property type="entry name" value="Malonyl_transacylase_ACP-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00698">
        <property type="entry name" value="Acyl_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000446">
        <property type="entry name" value="Mct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00827">
        <property type="entry name" value="PKS_AT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52151">
        <property type="entry name" value="SSF52151"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55048">
        <property type="entry name" value="SSF55048"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00128">
        <property type="entry name" value="fabD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PKS_AT" evidence="5">
        <location>
            <begin position="1"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="active site" evidence="4">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <feature type="active site" evidence="4">
        <location>
            <position position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR000446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000446-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19307.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="300" mass="32426" checksum="C6E831B30878D706" modified="2015-11-11" version="1">MGMGKDFYTHFKEAREVFNQANEILGFDIAAFCFQGKQEELNKTSLCQPAILVTSLAILEVLKTNTATSENECQAAAGLSLGEYTAHVAAGSMAFRNAVRLVSQRGLFMQEACNANPGGMVSVIGLADEKVEQICAEMMPAGVLCAANYNSPGQVVISGEKPLLEKASVLAKERGARMVVPLKVDGAFHSGLMAPASDKLARELEVTPISKPNIPVVANIYAQYVTEPDEIKVSLAKQLNSPVRWHQSISLLIHNGFNRFYEIGPGKTLSGLMKRIDATQEINSIDTIEAMENIGKSNSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU14</accession>
    <name>A0A0M2UU14_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01724</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000180">
        <property type="protein sequence ID" value="KKO19553.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19553">
        <property type="protein sequence ID" value="KKO19553"/>
        <property type="gene ID" value="BROFUL_01724"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19553.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="34" mass="3835" checksum="2D55B5C0C9058FAC" modified="2015-11-11" version="1">MDRNECLDKEVYVATGGALQERVLILSKEMILVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU26</accession>
    <name>A0A0M2UU26_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Protein involved in methylthiolation of isopentenylated A37 derivatives in tRNA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">miaB</name>
        <name evidence="5" type="ORF">BROFUL_01721</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000179">
        <property type="protein sequence ID" value="KKO19568.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19568">
        <property type="protein sequence ID" value="KKO19568"/>
        <property type="gene ID" value="BROFUL_01721"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006158">
        <property type="entry name" value="Cobalamin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036724">
        <property type="entry name" value="Cobalamin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020612">
        <property type="entry name" value="Methylthiotransferase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034466">
        <property type="entry name" value="Methyltransferase_Class_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02310">
        <property type="entry name" value="B12-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01123">
        <property type="entry name" value="methyltransferase_(Class_B)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52242">
        <property type="entry name" value="SSF52242"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01278">
        <property type="entry name" value="MTTASE_RADICAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="B12-binding" evidence="3">
        <location>
            <begin position="15"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="4">
        <location>
            <begin position="197"/>
            <end position="434"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19568.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="471" mass="53797" checksum="EF40896FF51BC749" modified="2015-11-11" version="1">MKKTKILLLSPPQGLSTGHVEVPKFQVHPLGLLYIASVLEKYRYNVKILDALNFCKSLDEIKKTIIDFMPDIVGISATTPSANDAYAVAKVIKQINHETAIVMGGPHVTAMHDEALNSRDIDIAVLGEGEFSMLEICENFEKKRNDLNNIGGIVFKSNGTIVKTNSRTKYDELNNIPFPAYHLLPNFKDYNPPPHWGKKGKFASIITSRGCPYDCSFCSVTRNWGRKYRYRSAENVINEIEYLNNNFGVNFISFRDSIATLHRRRLIDICKGIVEKKLKITWNCNARINEVNLELLTWMKKAGCKSIFYGIESGNEQILSQFKELKKEDIRQVVGLTHKVGIEPHGFFMFGLPGETKETMRDTINFAKSLKLHTAGFTTVTPFPGSRLWDYSLNYNLVLTTDWNQYNLKGKPVSKHSNLTAEEILDAQKKAFKEFYLRPKIIYYQLKNIKSLNDLSSYVQEGIINLFKKRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU91</accession>
    <name>A0A0M2UU91_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putrescine/spermidine ABC transporter ATPase protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01890</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000195">
        <property type="protein sequence ID" value="KKO19402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19402">
        <property type="protein sequence ID" value="KKO19402"/>
        <property type="gene ID" value="BROFUL_01890"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005116">
        <property type="entry name" value="Transp-assoc_OB_typ1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03459">
        <property type="entry name" value="TOBE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TOBE" evidence="1">
        <location>
            <begin position="98"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03459"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="163" mass="18199" checksum="AC47A363CEA4DDDC" modified="2015-11-11" version="1">MHTPRIAKVGLNNGTIEQFGSPDEVFYKPKTLFVAHFLNTENVLKGKIIHTFGNKVTIQINDIMLKIFTLLKLSEGDQVTVCIRPGAIHLSTHRIQPGRNVFTGVVESIHPIGRDLETKVLVTLHEVLKIRISRIVAKELGLTHGMQVNLSIDEAFVHLIPIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUN4</accession>
    <name>A0A0M2UUN4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01754</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000182">
        <property type="protein sequence ID" value="KKO19527.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19527">
        <property type="protein sequence ID" value="KKO19527"/>
        <property type="gene ID" value="BROFUL_01754"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19527.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="63" mass="7389" checksum="75AADF8FD4D31873" modified="2015-11-11" version="1">MKNKKAKKSICFGCNYAIVLDGKIVFCNILMRDVAYKSCTAFERNWQIDDIVPEKTKERKKEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUP6</accession>
    <name>A0A0M2UUP6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01521</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000157">
        <property type="protein sequence ID" value="KKO19763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19763">
        <property type="protein sequence ID" value="KKO19763"/>
        <property type="gene ID" value="BROFUL_01521"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="62" mass="7385" checksum="63EE31A049FD640C" modified="2015-11-11" version="1">MRRFRKIFQNARITRPLSDSEVTVNEMTKAVRFKGHEVFEVKRINQTDWGISIQKRDGVYSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUY7</accession>
    <name>A0A0M2UUY7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01647</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19612.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19612">
        <property type="protein sequence ID" value="KKO19612"/>
        <property type="gene ID" value="BROFUL_01647"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013424">
        <property type="entry name" value="PEP_exosort_dom"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02595">
        <property type="entry name" value="PEP_exosort"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644029" evidence="2">
        <location>
            <begin position="29"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19612.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="75" mass="8006" checksum="83EF8E327B190CFF" modified="2015-11-11" version="1">MRKRLLTFGGCLSALVLSTMIVINSADANGKKNKPPKPVPEPISYALFAAGGSALVGLRYLRSRWKSKGSDLSAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUZ7</accession>
    <name>A0A0M2UUZ7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01824</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000190">
        <property type="protein sequence ID" value="KKO19445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19445">
        <property type="protein sequence ID" value="KKO19445"/>
        <property type="gene ID" value="BROFUL_01824"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="124" mass="13968" checksum="C983EE4CA4D68A80" modified="2015-11-11" version="1" fragment="single">MRQAKIQLTEEERATLKSFRSKGQHMTREVNRAHILSALDQNVPEKHILSVLGVGRTAIWRTRSAYLEKGLDYALHDVVRPGQPVKYGTNQQAEVVALACSAPPKGARRWTIALLTEAIRQQLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV16</accession>
    <name>A0A0M2UV16_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative adenylate/guanylate cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01677</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19642">
        <property type="protein sequence ID" value="KKO19642"/>
        <property type="gene ID" value="BROFUL_01677"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2072"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004016">
        <property type="term" value="F:adenylate cyclase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009190">
        <property type="term" value="P:cyclic nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07302">
        <property type="entry name" value="CHD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1230">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001054">
        <property type="entry name" value="A/G_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00211">
        <property type="entry name" value="Guanylate_cyc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00044">
        <property type="entry name" value="CYCc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50125">
        <property type="entry name" value="GUANYLATE_CYCLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="10"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="domain" description="Guanylate cyclase" evidence="3">
        <location>
            <begin position="200"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="380" mass="43371" checksum="0A75D14A31B58EC7" modified="2015-11-11" version="1">MENTMSDKRCVMLVDDDPSMLLTTAAILENEGYDVLTCSGGKEAIDKFHEAVFTVVLDINMSDISGLKVSEFLKLKNQYIPIIFYSGDDEREKRVDIRKHFRPHAYVVKGSDPEQLLDTVAGAVESYKNIKENMKLNETLKERNSLIEEFNQSLEDKVRQQVEEIQRTSRLKRYVSPQIAESIISSGSDKYLTNARKLLTICFSDLKGFTEASESMEPEDTITLLNEYFTEMTKIVFQYGGTLDKFMGDGILVFFGDPIMYNNHAERAVRMAIDMRDKVHELQNHWVKTGSNIGIYFGINTGYATVGNIGSEIQMNYTVIGHQVNIAHRLQMEAKPSQILIAQRTFSEIKDLVEVEEIKALKLKGINKLVDVYNVLRFKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV17</accession>
    <name>A0A0M2UV17_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">ATP-dependent protease ATPase subunit HslU</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Unfoldase HslU</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">hslU</name>
        <name evidence="8" type="ORF">BROFUL_02492</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">A double ring-shaped homohexamer of HslV is capped on each side by a ring-shaped HslU homohexamer. The assembly of the HslU/HslV complex is dependent on binding of ATP.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the ClpX chaperone family. HslU subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18831">
        <property type="protein sequence ID" value="KKO18831"/>
        <property type="gene ID" value="BROFUL_02492"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3095"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009376">
        <property type="term" value="C:HslUV protease complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036402">
        <property type="term" value="F:proteasome-activating activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043335">
        <property type="term" value="P:protein unfolding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00249">
        <property type="entry name" value="HslU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011704">
        <property type="entry name" value="ATPase_dyneun-rel_AAA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019489">
        <property type="entry name" value="Clp_ATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004491">
        <property type="entry name" value="HslU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48102:SF3">
        <property type="entry name" value="PTHR48102:SF3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07724">
        <property type="entry name" value="AAA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07728">
        <property type="entry name" value="AAA_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10431">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01086">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00390">
        <property type="entry name" value="hslU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 5" id="KW-0143">Chaperone</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="6">
        <location>
            <begin position="49"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="domain" description="ClpB_D2-small" evidence="7">
        <location>
            <begin position="336"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="18"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="60"/>
            <end position="65"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="257"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="322"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="394"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM01086"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="444" mass="50394" checksum="AE31AEBC48E70350" modified="2015-11-11" version="1">MNELTPRRIVEALDKYIIGQKNAKRAVSIAIRNRWRRYQLSDELREEVLPKNIIMIGPTGVGKTEIARRMAALVKAPFLKVEASKYTEVGYHGRDVESMVRDITEIGVNMVKAEMIQSVQEKAEKMAEERLLDLLLPPVPKSTESSPAEVEEQHLSTREKFRKKLHDGELSNRIVELTVQEKPYVLQGFVAGVEEMGMDFQNMLEKMIPPRAQVRKVPVAEAKRILAHEEAEKLIDREKVIQEAIRRTEQFGIIFVDEIDKIAGRESAHGPDISRQGVQRDLLPIVDGTTVNTRYGVVKTDRILFIAAGAFHVSKPSDLIPELQGRFPIRVELEDLGKEEFLRILTEPKNALTKQYKALLETEGIKVRFENDAIETIAEIAVQVNKRTQNIGARRLHTVMEKLVEDVSFDASDMGGAEVIINAKYVQEKLQAIAQDEDLSRYIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV42</accession>
    <name>A0A0M2UV42_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02940</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000277">
        <property type="protein sequence ID" value="KKO18364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18364">
        <property type="protein sequence ID" value="KKO18364"/>
        <property type="gene ID" value="BROFUL_02940"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="3"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="134" mass="15222" checksum="B339E3B37AC8A663" modified="2015-11-11" version="1">MARILIVGGQGRIRRSLVSILTREGFGVCEETGWDGVLKVCEKAAYDLVMVDLDAKPPEGDKILKRIKRVNGSIEMVAIVSQNRYDAHQMNNDGVYDCLRKPFRQKEVVHLVKKALEKKQLADKVRNMEQIIDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV50</accession>
    <name>A0A0M2UV50_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01325</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000139">
        <property type="protein sequence ID" value="KKO19933.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19933">
        <property type="protein sequence ID" value="KKO19933"/>
        <property type="gene ID" value="BROFUL_01325"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019099">
        <property type="entry name" value="Uncharacterised_PGPGW_TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09656">
        <property type="entry name" value="PGPGW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19933.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="80" mass="8895" checksum="A90900F03BDB4DB8" modified="2015-11-11" version="1">MKKVAKNIAKNTGGVCLILIGCILIFTPGPGLLTILAGLYITSFPGKPALVAKVKRTKFYHRYVMKIESKIKSKFKRKNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV77</accession>
    <name>A0A0M2UV77_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Thiol-disulfide oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">ccsX_3</name>
        <name evidence="3" type="ORF">BROFUL_02910</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18404.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18404">
        <property type="protein sequence ID" value="KKO18404"/>
        <property type="gene ID" value="BROFUL_02910"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016209">
        <property type="term" value="F:antioxidant activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000866">
        <property type="entry name" value="AhpC/TSA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00578">
        <property type="entry name" value="AhpC-TSA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644037" evidence="1">
        <location>
            <begin position="28"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="domain" description="Thioredoxin" evidence="2">
        <location>
            <begin position="10"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18404.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="173" mass="19837" checksum="1C9122D73EE2B974" modified="2015-11-11" version="1">MSMVGQFRRALLLTLFAMLSLPGVGFARDVEVVTSTDLKEVIRSNKDKIVAVTFWATWCSICVEHLPELSTLYEKYKNKNVEIIGVSLDDKPKAVQQFIEKKGITFPVLMARDKEEMSYVYQVKKIPLICYYKDGELEHREEGYTDPQHIEEDLRSCLQGSEPPKKDASMPSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVE8</accession>
    <name>A0A0M2UVE8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">4-hydroxy-tetrahydrodipicolinate reductase</fullName>
            <shortName evidence="9">HTPA reductase</shortName>
            <ecNumber evidence="9">1.17.1.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">dapB</name>
        <name evidence="12" type="ORF">BROFUL_02354</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>(S)-2,3,4,5-tetrahydrodipicolinate + H2O + NAD(+) = (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:35323"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16845"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:67139"/>
            <dbReference type="EC" id="1.17.1.8"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>(S)-2,3,4,5-tetrahydrodipicolinate + H2O + NADP(+) = (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:35331"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16845"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:67139"/>
            <dbReference type="EC" id="1.17.1.8"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="9">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 4/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 9">Belongs to the DapB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Was originally thought to be a dihydrodipicolinate reductase (DHDPR), catalyzing the conversion of dihydrodipicolinate to tetrahydrodipicolinate. However, it was shown in E.coli that the substrate of the enzymatic reaction is not dihydrodipicolinate (DHDP) but in fact (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinic acid (HTPA), the product released by the DapA-catalyzed reaction.</text>
    </comment>
    <dbReference type="EC" id="1.17.1.8" evidence="9"/>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18961">
        <property type="protein sequence ID" value="KKO18961"/>
        <property type="gene ID" value="BROFUL_02354"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2923"/>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00018"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008839">
        <property type="term" value="F:4-hydroxy-tetrahydrodipicolinate reductase"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016726">
        <property type="term" value="F:oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019877">
        <property type="term" value="P:diaminopimelate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00102">
        <property type="entry name" value="DapB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022663">
        <property type="entry name" value="DapB_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000846">
        <property type="entry name" value="DapB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022664">
        <property type="entry name" value="DapB_N_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023940">
        <property type="entry name" value="DHDPR_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20836">
        <property type="entry name" value="PTHR20836"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05173">
        <property type="entry name" value="DapB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01113">
        <property type="entry name" value="DapB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000161">
        <property type="entry name" value="DHPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00036">
        <property type="entry name" value="dapB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01298">
        <property type="entry name" value="DAPB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 9" id="KW-0220">Diaminopimelate biosynthesis</keyword>
    <keyword evidence="8 9" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="7 9" id="KW-0520">NAD</keyword>
    <keyword evidence="4 9" id="KW-0521">NADP</keyword>
    <keyword evidence="6 9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DapB_N" evidence="10">
        <location>
            <begin position="4"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="DapB_C" evidence="11">
        <location>
            <begin position="125"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="region of interest" description="(S)-2,3,4,5-tetrahydrodipicolinate binding" evidence="9">
        <location>
            <begin position="162"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="9">
        <location>
            <position position="152"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="9">
        <location>
            <position position="156"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="8"/>
            <end position="13"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="34"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="35"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="95"/>
            <end position="97"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="119"/>
            <end position="122"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="153"/>
        </location>
        <ligand>
            <name>(S)-2,3,4,5-tetrahydrodipicolinate</name>
            <dbReference type="ChEBI" id="CHEBI:16845"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF01113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF05173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO18961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="265" mass="28270" checksum="6F2897A25A5B8CF6" modified="2015-11-11" version="1">MFGIAIHGVCGRVGARIAALAVEDPEVKLVAAVERSGHPSLGKDVGVVSGCGDTGIKITPSLDAQADVLIDFSSPESTVAIAEVCAKKKIALVVGTTGLNPRQYEKLQSVSQVIPCLVSPNMSVGVNILFNLVGQVARMVEKEFDIEIIETHHRFKKDAPSGTALRLAEKICEATGREMAKDVVYGRSGITGERPVDQIGMHAVRSGDVVGDHTVVFGSLGERIEITHKAHTRDTFVRGAIRAAKFIAKKSPGMYNMSDVLQIRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVS5</accession>
    <name>A0A0M2UVS5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA methylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01339</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000139">
        <property type="protein sequence ID" value="KKO19947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19947">
        <property type="protein sequence ID" value="KKO19947"/>
        <property type="gene ID" value="BROFUL_01339"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1655"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044260">
        <property type="term" value="P:cellular macromolecule metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043412">
        <property type="term" value="P:macromolecule modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044238">
        <property type="term" value="P:primary metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009537">
        <property type="entry name" value="DUF1156"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06634">
        <property type="entry name" value="DUF1156"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DUF1156" evidence="1">
        <location>
            <begin position="9"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1004" mass="114713" checksum="CC10787E9753B8F1" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVT9</accession>
    <name>A0A0M2UVT9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01132</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20173.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20173">
        <property type="protein sequence ID" value="KKO20173"/>
        <property type="gene ID" value="BROFUL_01132"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002829">
        <property type="entry name" value="DUF116"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43801">
        <property type="entry name" value="PTHR43801"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01976">
        <property type="entry name" value="DUF116"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20173.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="147" mass="16667" checksum="3EF3FE62726AB231" modified="2015-11-11" version="1">MEFIDKKVVSINNLMMKFRKKKCSPKNLLILFPHCIQSSQCKQNVKNDLNECKRCGKCKVKDLIEFSEKYGVHITLASGGRAALQRVMDEDIHGVIAIACEKELRTGLMAAMSKAIFAVPNLRPHGYCKDTDVYLDEVKEAIEKFLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVU1</accession>
    <name>A0A0M2UVU1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 10">DNA-directed RNA polymerase subunit omega</fullName>
            <shortName evidence="10">RNAP omega subunit</shortName>
            <ecNumber evidence="2 10">2.7.7.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">RNA polymerase omega subunit</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9 10">Transcriptase subunit omega</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">rpoZ</name>
        <name evidence="11" type="ORF">BROFUL_01622</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8 10">
            <text>a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:21248"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.6"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="10">The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 10">Belongs to the RNA polymerase subunit omega family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.6" evidence="2 10"/>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19690">
        <property type="protein sequence ID" value="KKO19690"/>
        <property type="gene ID" value="BROFUL_01622"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed 5'-3' RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.940.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00366">
        <property type="entry name" value="RNApol_bact_RpoZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003716">
        <property type="entry name" value="DNA-dir_RNA_pol_omega"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006110">
        <property type="entry name" value="Pol_omega/Rpo6/RPB6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036161">
        <property type="entry name" value="RPB6/omega-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01192">
        <property type="entry name" value="RNA_pol_Rpb6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63562">
        <property type="entry name" value="SSF63562"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 10" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="6 10" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 10" id="KW-0804">Transcription</keyword>
    <keyword evidence="5 10" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006711"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00024550"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00029924"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00366"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO19690.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="79" mass="8857" checksum="06BE9480E7C98A6F" modified="2015-11-11" version="1">MIYKNIDELAKQVGGSLRLTTLIISRARQIIKKSAVLVAVDTDDPVRIAFLELMQSKIKLRESGEQEKKVLESKKTEGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVX0</accession>
    <name>A0A0M2UVX0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02648</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000241">
        <property type="protein sequence ID" value="KKO18649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18649">
        <property type="protein sequence ID" value="KKO18649"/>
        <property type="gene ID" value="BROFUL_02648"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="89" mass="10511" checksum="37A05BCB8FD483E3" modified="2015-11-11" version="1">MIYTIIGALKRLFVVFTKFVLYYHLTSPYCCARNIDTSIMRNHLENQLPFMAAFHRRSLGKGGDLSINRHKKNKKQLFYSKTNEKLNKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVX9</accession>
    <name>A0A0M2UVX9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 2">Hypoxanthine phosphoribosyltransferase</fullName>
            <ecNumber evidence="1 2">2.4.2.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01273</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>diphosphate + IMP = 5-phospho-alpha-D-ribose 1-diphosphate + hypoxanthine</text>
            <dbReference type="Rhea" id="RHEA:17973"/>
            <dbReference type="ChEBI" id="CHEBI:17368"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <dbReference type="EC" id="2.4.2.8"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Purine metabolism; IMP biosynthesis via salvage pathway; IMP from hypoxanthine: step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the purine/pyrimidine phosphoribosyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.8" evidence="1 2"/>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20002">
        <property type="protein sequence ID" value="KKO20002"/>
        <property type="gene ID" value="BROFUL_01273"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00591">
        <property type="reaction ID" value="UER00648"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052657">
        <property type="term" value="F:guanine phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004422">
        <property type="term" value="F:hypoxanthine phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032264">
        <property type="term" value="P:IMP salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006166">
        <property type="term" value="P:purine ribonucleoside salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005904">
        <property type="entry name" value="Hxn_phspho_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01203">
        <property type="entry name" value="HGPRTase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 5" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-0660">Purine salvage</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="35"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="domain" description="Pribosyltran" evidence="4">
        <location>
            <begin position="14"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU364099"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="184" mass="21340" checksum="5247798DAED7BD28" modified="2015-11-11" version="1">MEKDVARVIINEKQIRDKLLELSKTLIRDYQDKDWTVIAILNGSLIFLADLIRLIPFPVRLDTIDAATYGESTLPQGETKVIRQFKIDIEGKHVLVIDDIADTGSTLKRVLEDIRKYHPRTLKSCVLLNRIGRRRYDIRPEYCCFDIGDDYVVGYGLDYNNKYRNLPFIAVLKDECYRGDGVVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW09</accession>
    <name>A0A0M2UW09_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01099</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20248">
        <property type="protein sequence ID" value="KKO20248"/>
        <property type="gene ID" value="BROFUL_01099"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="65" mass="6970" checksum="31A4FDC90435F0C0" modified="2015-11-11" version="1">MPQNANGNEVIPSARRLIKSLRDMGYDFASAVADLVDNSIEAGASLVAIDVEFDGDDSWVRIADS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW38</accession>
    <name>A0A0M2UW38_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">CMD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02593</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000239">
        <property type="protein sequence ID" value="KKO18714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18714">
        <property type="protein sequence ID" value="KKO18714"/>
        <property type="gene ID" value="BROFUL_02593"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051920">
        <property type="term" value="F:peroxiredoxin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029032">
        <property type="entry name" value="AhpD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003779">
        <property type="entry name" value="CMD-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02627">
        <property type="entry name" value="CMD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69118">
        <property type="entry name" value="SSF69118"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="75"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="domain" description="CMD" evidence="2">
        <location>
            <begin position="19"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02627"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="113" mass="12452" checksum="8ECF3BE0FD709013" modified="2015-11-11" version="1">MPKGKLPQPFLRIKKRHEKFFNAVEELGKVAKQEGPLDEKTIHLVQLAAAATIHSEGAVHSHVRRALEAGVTPEAIYHALLLLTSTIGFPTVIAAVTWAEDVIKGKKRQNTLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW39</accession>
    <name>A0A0M2UW39_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Cysteine desulfurase</fullName>
            <ecNumber evidence="4">2.8.1.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02108</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[sulfur carrier]-H + L-cysteine = [sulfur carrier]-SH + L-alanine</text>
            <dbReference type="Rhea" id="RHEA:43892"/>
            <dbReference type="Rhea" id="RHEA-COMP:14737"/>
            <dbReference type="Rhea" id="RHEA-COMP:14739"/>
            <dbReference type="ChEBI" id="CHEBI:29917"/>
            <dbReference type="ChEBI" id="CHEBI:35235"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="ChEBI" id="CHEBI:64428"/>
            <dbReference type="EC" id="2.8.1.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 5">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.8.1.7" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000211">
        <property type="protein sequence ID" value="KKO19181.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19181">
        <property type="protein sequence ID" value="KKO19181"/>
        <property type="gene ID" value="BROFUL_02108"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2629"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031071">
        <property type="term" value="F:cysteine desulfurase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006534">
        <property type="term" value="P:cysteine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06453">
        <property type="entry name" value="SufS_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000192">
        <property type="entry name" value="Aminotrans_V_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020578">
        <property type="entry name" value="Aminotrans_V_PyrdxlP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010969">
        <property type="entry name" value="Cys_dSase-rel_unknwn_funct"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010970">
        <property type="entry name" value="Cys_dSase_SufS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016454">
        <property type="entry name" value="Cysteine_dSase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00266">
        <property type="entry name" value="Aminotran_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005572">
        <property type="entry name" value="NifS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01977">
        <property type="entry name" value="am_tr_V_EF2568"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00595">
        <property type="entry name" value="AA_TRANSFER_CLASS_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminotran_5" evidence="6">
        <location>
            <begin position="2"/>
            <end position="370"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU004504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19181.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="382" mass="41615" checksum="45671530CE3AABBD" modified="2015-11-11" version="1">MIYLDNAATTYPKPEIVYKTMDTFYRTQGANPGRSGHRMAMAAEKEVEDARATVAQLFGIQDPRRLILTFNATDAINMGIKGFLKPGDHAITTFLEHNAVSRALHGLEKRAGITVTKVKNSQEGFVDPVDIRNAITSKTRLIVMTHAPNVLGTIQPIREIGRIARENNIMFMVDAAQTAGVCEIDVHECGIDMLAFTGHKGPLGPTGTGGLYVGDRLTLEPWREGGTGFEAASLSQPEELPFRLESGTPNTVGIAGLRAGIEYVVSKGIATIRAHEQHLTNKIIQAIQHDQRFVLYGTTDITKKVGILSMNVKGFKPQEIGAILDQSFQIAVRPGLHCAPFAHQMIGTFPDGAVRISPGCFNTEDDIDQLITALMKIANEKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW57</accession>
    <name>A0A0M2UW57_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Aerobic respiration control sensor protein ArcB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02566</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000238">
        <property type="protein sequence ID" value="KKO18734.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18734">
        <property type="protein sequence ID" value="KKO18734"/>
        <property type="gene ID" value="BROFUL_02566"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036641">
        <property type="entry name" value="HPT_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008207">
        <property type="entry name" value="Sig_transdc_His_kin_Hpt_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01627">
        <property type="entry name" value="Hpt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47226">
        <property type="entry name" value="SSF47226"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50894">
        <property type="entry name" value="HPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HPt" evidence="2">
        <location>
            <begin position="35"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="modified residue" description="Phosphohistidine" evidence="1">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18734.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="132" mass="15097" checksum="1115E11160C1D3AF" modified="2015-11-11" version="1">MKASANDISGCRKERWQNDETVFDKDEALEINGNEEEFLKELAEMFIDDFPEQISLVKKAVNSRDSNALEKSAHKLKGAVANFGKNIVYRAVLNLEAMGRENRWDDVEETYGALTREAERLMHALKKFAKSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW80</accession>
    <name>A0A0M2UW80_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Thermostable monoacylglycerol lipase</fullName>
            <ecNumber evidence="3">3.1.1.23</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02065</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.23" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000208">
        <property type="protein sequence ID" value="KKO19221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19221">
        <property type="protein sequence ID" value="KKO19221"/>
        <property type="gene ID" value="BROFUL_02065"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2575"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047372">
        <property type="term" value="F:acylglycerol lipase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022742">
        <property type="entry name" value="Hydrolase_4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12146">
        <property type="entry name" value="Hydrolase_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="domain" description="Hydrolase_4" evidence="2">
        <location>
            <begin position="123"/>
            <end position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="487" mass="55211" checksum="A00B2C08BCBB924F" modified="2015-11-11" version="1">MSVITLGKRIFTWIITLIGCLVAVIFTIILVRGFDARRMPDLKIWHTTRLTPEFKASDMKPGFTFEDYLKLEDQLFENVKVSVDQRIAKEDQHILNRYFAGSICHPDRQEKNWNRTFELSPEHPKGGILLLHGLSDGPYSMRALAHIFYRQGYYALVPRLPGHGTIPSSLKGPTWKDWVAAADVAAHHVRAVIGPDAPLFLGGYSNGGLIAVYYALNSVNDESIIRPQKLFLFSPAIGITRFAAFSGWHRALSFIPYFQKIAWESIMPEYDPFKYNSFPKIAGHQLFQLARVTQKKIEQLKNDGKLERLPPIQTFSSVVDSTVLAPSLVTHLYNQLKPNGHELILFDVNRFSALEPFIKDRHEAFLNNLKGASALPYAWTLITNQTPDTLRVVAETHDAGSDAATAEPLNIEWPKGIYSLSHVAVPFSPEDPLYGDREDLKKKGYFVLGLVEPRGEKGVLQVPVDQLMRLRYNPFFSYMERRIAESL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW85</accession>
    <name>A0A0M2UW85_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02544</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18764.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18764">
        <property type="protein sequence ID" value="KKO18764"/>
        <property type="gene ID" value="BROFUL_02544"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0129">CBS domain</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CBS" evidence="2">
        <location>
            <begin position="7"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="2">
        <location>
            <begin position="80"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18764.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="138" mass="15584" checksum="F0E5FFA15616B853" modified="2015-11-11" version="1">MLVKEVMKTQLVTLNDDSKLGFANDIMYLGRIRHLPVVKGEHIVGILTQRDLYRASLTSILTNWKENNEFLDSIKVSEVMTKHVVTISPEATIEEAAQSMIDKKVGALPVVKEKARLVGLITETDVLQYFVDESKKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWB5</accession>
    <name>A0A0M2UWB5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 14">Crossover junction endodeoxyribonuclease RuvC</fullName>
            <ecNumber evidence="11 14">3.1.21.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13 14">Holliday junction nuclease RuvC</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12 14">Holliday junction resolvase RuvC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="primary">ruvC</name>
        <name evidence="15" type="ORF">BROFUL_00920</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9 14">Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10 14">
            <text>Endonucleolytic cleavage at a junction such as a reciprocal single-stranded crossover between two homologous DNA duplexes (Holliday junction).</text>
            <dbReference type="EC" id="3.1.21.10"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="14">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="14">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 14">Belongs to the RuvC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.21.10" evidence="11 14"/>
    <dbReference type="EMBL" id="LAQJ01000110">
        <property type="protein sequence ID" value="KKO20363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20363">
        <property type="protein sequence ID" value="KKO20363"/>
        <property type="gene ID" value="BROFUL_00920"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1159"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008821">
        <property type="term" value="F:crossover junction endodeoxyribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16962">
        <property type="entry name" value="RuvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00034">
        <property type="entry name" value="RuvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020563">
        <property type="entry name" value="X-over_junc_endoDNase_Mg_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002176">
        <property type="entry name" value="X-over_junc_endoDNase_RuvC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30194">
        <property type="entry name" value="PTHR30194"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02075">
        <property type="entry name" value="RuvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00696">
        <property type="entry name" value="RSOLVASERUVC"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00228">
        <property type="entry name" value="ruvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01321">
        <property type="entry name" value="RUVC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 14" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7 14" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="8 14" id="KW-0234">DNA repair</keyword>
    <keyword evidence="5 14" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6 14" id="KW-0460">Magnesium</keyword>
    <keyword evidence="14" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 14" id="KW-0540">Nuclease</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="14">
        <location>
            <position position="7"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="67"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="140"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="143"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009518"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00014685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00025073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00029354"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00029488"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00030265"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00030973"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KKO20363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="157" mass="17098" checksum="04ABD28C22BEBF7E" modified="2015-11-11" version="1">MKILGIDPGTQVAGFGVIEKTGARIVTIEYGAIQAGKNQSFPQRLYTIYTKIMDIISKHQPDEMAIEEVFYSKNIKSAIRIGEGRGIVFLCAASANIPITEYAATVIKKAVVGNGNAHKEQVQEMVKIILNLPEIPGSRDASDALAIAICHSHNLRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWB6</accession>
    <name>A0A0M2UWB6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02460</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18799.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18799">
        <property type="protein sequence ID" value="KKO18799"/>
        <property type="gene ID" value="BROFUL_02460"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="107"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18799.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="174" mass="20082" checksum="42028CD741B37B94" modified="2015-11-11" version="1">MFGRKLVTLFLLIIATFLVLYSYGFYKKRQTVSQLDGKIKMGKYTDALASVQKLQESPVIRMISKLEKEDPVIAYNKGVIYVLMENKKKASAEFRRAMETDDPVLKARAIYNTANIIATDMDFSTAAMQYTEVLKIDPDDFQAKKNLERMRVGEQQFNTMFSRSNRNGKTELRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWE5</accession>
    <name>A0A0M2UWE5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">High-affinity branched-chain amino acid transport system permease protein LivH</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">livH</name>
        <name evidence="7" type="ORF">BROFUL_01111</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20152.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20152">
        <property type="protein sequence ID" value="KKO20152"/>
        <property type="gene ID" value="BROFUL_01111"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1379"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015658">
        <property type="term" value="F:branched-chain amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06581">
        <property type="entry name" value="TM_PBP1_LivM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043428">
        <property type="entry name" value="LivM-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30482">
        <property type="entry name" value="PTHR30482"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="36"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="61"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="87"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="131"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="183"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="218"/>
            <end position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20152.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="288" mass="31054" checksum="E30AAFB7D00C56BA" modified="2015-11-11" version="1">MEYFLHILVIAGIYIILTLGLNLIVGFTGLPSLGHIAFACVGAYASSLLALNYGISPWLGLVSGACIASLSGLVVGFASIRLKGDYLALATFGLGVIIYAVSKNWVDLTRGPMGLPGIPGFSLPGFEIQAVWTYLMLVIVFVFITPCIINRIAHSPFGRILKSIREDELASLSMGKDINKYKLLVFVIGAFFAGIAGSLYAHYITFIDPSSFTPMESIAVLLMVVFGGMGSMKGSFLGALILVIFPEMLRFLGMPGSVDAPLRQMIYGLLLIILIIKRPQGIVGKYRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWE7</accession>
    <name>A0A0M2UWE7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02490</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Fur family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18829">
        <property type="protein sequence ID" value="KKO18829"/>
        <property type="gene ID" value="BROFUL_02490"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07153">
        <property type="entry name" value="Fur_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002481">
        <property type="entry name" value="FUR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043135">
        <property type="entry name" value="Fur_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33202">
        <property type="entry name" value="PTHR33202"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01475">
        <property type="entry name" value="FUR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007957"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="142" mass="16606" checksum="E42012BCEC40F142" modified="2015-11-11" version="1">MYFVMETIEKLTKKLRSQGMKITPQRLMIFKVLENNTSHPSAENVYKRVKRIYPSVSFTTIYKTLETLRELGEVREFVIDGDRKHYDPNTNLHHHVICSSCKRILDVFEDFSPSVKLPDAVKKDYAVSGFQIFFHGICKECN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWG3</accession>
    <name>A0A0M2UWG3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">H+-driven flagellar motor component MotB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">motB_1</name>
        <name evidence="3" type="ORF">BROFUL_00879</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000106">
        <property type="protein sequence ID" value="KKO20408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20408">
        <property type="protein sequence ID" value="KKO20408"/>
        <property type="gene ID" value="BROFUL_00879"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025713">
        <property type="entry name" value="MotB_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036737">
        <property type="entry name" value="OmpA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13677">
        <property type="entry name" value="MotB_plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0966">Cell projection</keyword>
    <keyword evidence="3" id="KW-0969">Cilium</keyword>
    <keyword evidence="3" id="KW-0282">Flagellum</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="domain" description="MotB_plug" evidence="2">
        <location>
            <begin position="6"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="258" mass="28831" checksum="63D5E0920054C56F" modified="2015-11-11" version="1">MSDEGGSSGGHGGPVWLLTYCDLITLLVAFFVMMISFSTINVDKYKEDIPKIEESFDSERWSERFTGVFEEGLQTKGEGYSGGKTGESLLTGGKKPLETFFEKELEEERRFEEEDQHEENFVDPEEMYNFLSGFTKRGGLAKGIDIEDVKIGCRIKIPTDLCFKKGESALTGQAYDIFDVLGTALRTMRGKIVVATNAGKALQQGREFLSDVSVDRAANICDLLAMRENIEPKRIAISRHYSADTAEENMIAIVIFKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWQ0</accession>
    <name>A0A0M2UWQ0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 11">UDP-N-acetylmuramate--L-alanine ligase</fullName>
            <ecNumber evidence="4 11">6.3.2.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">UDP-N-acetylmuramoyl-L-alanine synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">murC</name>
        <name evidence="16" type="ORF">BROFUL_02327</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Cell wall formation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>ATP + L-alanine + UDP-N-acetyl-alpha-D-muramate = ADP + H(+) + phosphate + UDP-N-acetyl-alpha-D-muramoyl-L-alanine</text>
            <dbReference type="Rhea" id="RHEA:23372"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="ChEBI" id="CHEBI:70757"/>
            <dbReference type="ChEBI" id="CHEBI:83898"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.8"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 11">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the MurCDEF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.8" evidence="4 11"/>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18934">
        <property type="protein sequence ID" value="KKO18934"/>
        <property type="gene ID" value="BROFUL_02327"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2892"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008763">
        <property type="term" value="F:UDP-N-acetylmuramate-L-alanine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00046">
        <property type="entry name" value="MurC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036565">
        <property type="entry name" value="Mur-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004101">
        <property type="entry name" value="Mur_ligase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036615">
        <property type="entry name" value="Mur_ligase_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013221">
        <property type="entry name" value="Mur_ligase_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000713">
        <property type="entry name" value="Mur_ligase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005758">
        <property type="entry name" value="UDP-N-AcMur_Ala_ligase_MurC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01225">
        <property type="entry name" value="Mur_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02875">
        <property type="entry name" value="Mur_ligase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08245">
        <property type="entry name" value="Mur_ligase_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53244">
        <property type="entry name" value="SSF53244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53623">
        <property type="entry name" value="SSF53623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01082">
        <property type="entry name" value="murC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9 11" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="6 11" id="KW-0132">Cell division</keyword>
    <keyword evidence="7 11" id="KW-0133">Cell shape</keyword>
    <keyword evidence="10 11" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="5 11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="11 16" id="KW-0436">Ligase</keyword>
    <keyword evidence="12" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8 11" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="30"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase" evidence="13">
        <location>
            <begin position="31"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_M" evidence="15">
        <location>
            <begin position="134"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_C" evidence="14">
        <location>
            <begin position="334"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="136"/>
            <end position="142"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF01225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF02875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF08245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="KKO18934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="480" mass="52515" checksum="02ECE4ABBA4DF291" modified="2015-11-11" version="1">MNASERGKMASVSTSLLESQINCRPSRGHCVYFIGIGGIGMSAVARILIHEGCIVAGSDLRTSSLTSTLEEMGAKINTKQDGSFMSSETDMVVVSASISEDNLDLKTARKMGIKVVKYSQILGSLMKEKRGIAISGTHGKTTTSAMISTILKTAGLDPTFVIGGEVPDIGGNAHLGKGNLFVAEACEYDRSFLNLTPQVGVITNIEEDHLDYYGNIETIVHAFGDFASSISKEGLLVVNDNDNNIAAAVQKANCKVETYSLSNASDWYGEVLSGGSGLKRFRVLHNGKLFDEISLKIPGSHNVLNALAATAVCTFIGVDKDSIKNALSLFHGANRRFQIIGARNGITVIDDYAHHPTEIRVTLRAARELYPEKRIWCVFQPHQYSRTRHLLKEFSRSFQNANRVILADIYATRDNDYEKTAMNAMKLYEETRNTGMDIQYIPQLSDIVNVLYSGVRPGDIVMTMGAGDVWKVAYDLVSRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWQ2</accession>
    <name>A0A0M2UWQ2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">2-acyl-glycerophospho-ethanolamine acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_00780</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000099">
        <property type="protein sequence ID" value="KKO20493.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20493">
        <property type="protein sequence ID" value="KKO20493"/>
        <property type="gene ID" value="BROFUL_00780"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="54"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="87"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="115"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="152"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="178"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="21"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20493.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="210" mass="22631" checksum="5AB37A39607B6DEA" modified="2015-11-11" version="1">MAFVFTDIKEGMKYLCRDGRLIILIFFGAFFWLLGISFYIVLSDFAGKVWGFTSLMPLGLIFSLLGGGLVTGAVLTGKYGDRVKRNILYTGSVLMLACGIIVVAVVSSYTAASCTVFFVGIAGGAFLAPINADIQKITPDELRGRSFACKDIIMNATMIAPIPVIGKLTTFIAAREMMLSVGIGGLLAGIFVAWQSVKLNAIQEFAREDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWQ9</accession>
    <name>A0A0M2UWQ9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Chaperone protein DnaJ</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01281</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20010">
        <property type="protein sequence ID" value="KKO20010"/>
        <property type="gene ID" value="BROFUL_01281"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06257">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001623">
        <property type="entry name" value="DnaJ_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036869">
        <property type="entry name" value="J_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00226">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00625">
        <property type="entry name" value="JDOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00271">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46565">
        <property type="entry name" value="SSF46565"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50076">
        <property type="entry name" value="DNAJ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="7"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="30"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="93"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="125"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="domain" description="J" evidence="3">
        <location>
            <begin position="336"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="225"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20010.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="400" mass="46271" checksum="521E958A20ABAE36" modified="2015-11-11" version="1">MKEFIGFIAIIVTLLLLLLLAFGLLRVALITLPACIVAISVILLVLYLFRAQRIQYLNSRGVLSRILIVQFDGQKLNWEVDESQIELYAKAKLATFFCIILGMASIWLILGIVHNKGAFDNLTRLSSQANMIIGYIMSGMVVIITIIKAKPGETFKEAIWERGSYLVDRINTQLERIHELRSLETAIKSIAYQLKVSFPIDSNSGIQEFVNIHKNELLTDTTGLNNLIAENIKRAEEDRMHLEKANNHYRAAMKLYTIVAIEVNWTSSMPMIKEMEYDYEGLTSENLKSLLVDKKWDDFHDIVKEIMMDLQQLRELAIKYQEEGTTSYKKETEEEKAYRVMEISPHASNEDIKKAYRDLARNYHPDNAEQTTRGIKKLAEDRFKEINWAYNFLKEARNFW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWR5</accession>
    <name>A0A0M2UWR5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00986</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000118">
        <property type="protein sequence ID" value="KKO20277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20277">
        <property type="protein sequence ID" value="KKO20277"/>
        <property type="gene ID" value="BROFUL_00986"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="82" mass="9219" checksum="69183CD408338BD4" modified="2015-11-11" version="1">MKKENAPGRKQILAEISKIRDALAELDGFFRKADEDISLDPEDPRQGIGRLPGLDRLMFLIPCVIKRLAEDLSQIQEGDISL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWS3</accession>
    <name>A0A0M2UWS3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ABC transporter substrate binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02347</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18954.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18954">
        <property type="protein sequence ID" value="KKO18954"/>
        <property type="gene ID" value="BROFUL_02347"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18954.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="122" mass="14006" checksum="E9AD1A77E98BFDF3" modified="2015-11-11" version="1">MIVRTDFLKNHPDYVKRWLAAHVKITRWIHQHSRKARKIIGEEIKALSGVSLPEEVMNDAFSTLEATYDPIVPSLVSYAEMAYNAGFLGSQKFDISGLIDLELLNEVLKERSLPQVSEEYRM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWX0</accession>
    <name>A0A0M2UWX0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Beta-ketoacyl (Acyl carrier protein) synthase II</fullName>
            <ecNumber evidence="2">2.3.1.41</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">kas</name>
        <name evidence="2" type="ORF">BROFUL_02288</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.41" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO18994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18994">
        <property type="protein sequence ID" value="KKO18994"/>
        <property type="gene ID" value="BROFUL_02288"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004315">
        <property type="term" value="F:3-oxoacyl-[acyl-carrier-protein] synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000794">
        <property type="entry name" value="Beta-ketoacyl_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014030">
        <property type="entry name" value="Ketoacyl_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11712">
        <property type="entry name" value="PTHR11712"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00109">
        <property type="entry name" value="ketoacyl-synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Ketoacyl_synth_N" evidence="1">
        <location>
            <begin position="2"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="346" mass="36527" checksum="092E8FDD85867DE1" modified="2015-11-11" version="1">MTGVGMVTSMGIGKEQFWNNVVNGSSGIKRLTKFPTAHETYCGEISDFHFDVSISDNRFRRAADISKYTLTAVNLAISDAGTKTLDDKDTALVVGITHGALNYAQAFHKSLVMEGVDDISPIHFSDSVLNAPAGNVSIGFGIKGPIHTLVGGATTAIKAVMLASRMLSSGVVSKSIVVSSDELNELSLHCYSRLGIHTLSEGSGAVLIEKEGKITGTTPYCYLSSIASQCNPSNPCATLHEVINQCLEKADIGPKDIDLVMTDSCVPVKSDLHDIPVGCIIPLSGNAFSLTVILHIIVSSLAINNGAIPKAIIRNGISISDCLQNVLIYSTEEDGIASAMILSKCL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX57</accession>
    <name>A0A0M2UX57_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00631</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20648">
        <property type="protein sequence ID" value="KKO20648"/>
        <property type="gene ID" value="BROFUL_00631"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20648.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="81" mass="9481" checksum="2AC2E397B622AE4F" modified="2015-11-11" version="1">MITADFVVNAQSNDNNFIFWFLNPDNQYSSVSDFVSFYLFLSPPFINIPRILFLKGEVFNQTDQKIFAYNVYVLANCRFSC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXB3</accession>
    <name>A0A0M2UXB3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Bacterioferritin</fullName>
            <ecNumber evidence="2">1.16.3.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">bfr</name>
        <name evidence="5" type="ORF">BROFUL_00559</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>4 Fe(2+) + 4 H(+) + O2 = 4 Fe(3+) + 2 H2O</text>
            <dbReference type="Rhea" id="RHEA:11148"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
            <dbReference type="ChEBI" id="CHEBI:29034"/>
            <dbReference type="EC" id="1.16.3.1"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterioferritin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.16.3.1" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000077">
        <property type="protein sequence ID" value="KKO20723.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20723">
        <property type="protein sequence ID" value="KKO20723"/>
        <property type="gene ID" value="BROFUL_00559"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008199">
        <property type="term" value="F:ferric iron binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004322">
        <property type="term" value="F:ferroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006879">
        <property type="term" value="P:cellular iron ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006826">
        <property type="term" value="P:iron ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002024">
        <property type="entry name" value="Bacterioferritin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012347">
        <property type="entry name" value="Ferritin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009040">
        <property type="entry name" value="Ferritin-like_diiron"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008331">
        <property type="entry name" value="Ferritin_DPS_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00210">
        <property type="entry name" value="Ferritin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002560">
        <property type="entry name" value="Bacterioferritin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00601">
        <property type="entry name" value="BACFERRITIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50905">
        <property type="entry name" value="FERRITIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0349">Heme</keyword>
    <keyword evidence="2 3" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0409">Iron storage</keyword>
    <keyword evidence="2 3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ferritin-like diiron" evidence="4">
        <location>
            <begin position="2"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="19"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="51"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="3">
        <location>
            <position position="53"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="55"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="96"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="129"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR002560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR002560-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20723.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="156" mass="17881" checksum="10C466AF1EF46313" modified="2015-11-11" version="1">MGKINEKVYKVLCEVYAAEIGAVGIYMDQHTKCADMGYQKLADMLKNDAIDEMKHAEALAERILMLGSTVKYQKHIVPEEKQNDIVTMLKLNINIEIEAIERLNSGITICFHEKDHGSRMLLEEILKSEEKHLSELQTKVNNTEKFGNQYIVTHLM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXD3</accession>
    <name>A0A0M2UXD3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Glycogen synthase</fullName>
            <ecNumber evidence="7">2.4.1.21</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Starch [bacterial glycogen] synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">glgA</name>
        <name evidence="10" type="ORF">BROFUL_00525</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 7">Synthesizes alpha-1,4-glucan chains using ADP-glucose.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>[(1-&gt;4)-alpha-D-glucosyl](n) + ADP-alpha-D-glucose = [(1-&gt;4)-alpha-D-glucosyl](n+1) + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:18189"/>
            <dbReference type="Rhea" id="RHEA-COMP:9584"/>
            <dbReference type="Rhea" id="RHEA-COMP:9587"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15444"/>
            <dbReference type="ChEBI" id="CHEBI:57498"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.4.1.21"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Glycan biosynthesis; glycogen biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the glycosyltransferase 1 family. Bacterial/plant glycogen synthase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.21" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000073">
        <property type="protein sequence ID" value="KKO20743.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20743">
        <property type="protein sequence ID" value="KKO20743"/>
        <property type="gene ID" value="BROFUL_00525"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.659"/>
    <dbReference type="UniPathway" id="UPA00164"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033201">
        <property type="term" value="F:alpha-1,4-glucan synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004373">
        <property type="term" value="F:glycogen (starch) synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009011">
        <property type="term" value="F:starch synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005978">
        <property type="term" value="P:glycogen biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00484">
        <property type="entry name" value="Glycogen_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011835">
        <property type="entry name" value="GS/SS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013534">
        <property type="entry name" value="Starch_synth_cat_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08323">
        <property type="entry name" value="Glyco_transf_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02095">
        <property type="entry name" value="glgA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0320">Glycogen biosynthesis</keyword>
    <keyword evidence="4 7" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_transf_5" evidence="9">
        <location>
            <begin position="2"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="domain" description="Glycos_transf_1" evidence="8">
        <location>
            <begin position="295"/>
            <end position="451"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="15"/>
        </location>
        <ligand>
            <name>ADP-alpha-D-glucose</name>
            <dbReference type="ChEBI" id="CHEBI:57498"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF08323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO20743.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="488" mass="55492" checksum="170B347ECBB19FF2" modified="2015-11-11" version="1">MNVAYLSSEVAPFAKTGGLADMAGAIPRNLQKLGVKIMVLMPLYRSIKESACPLVKTDIRFEVRIGNKIKSGSVYKGFLPDSQVSVYFIDNEQYYGRDGLYNYPGIPKDFEDNSERFIFFSLGVLEVVERLRLRPDIVHCNDWQTGLVPVYLKTRYAGRSFFENTKSVMTIHNLAYQGCFWHWDMKLTGLDWSLFNAKQLEFYGKLNFLKGGIVFSDLITTVSKTYAAEIQTPEYGVGLDGVLRERAGDLYGIMNGIDYALWNPETDKFICANYGSKNLRGKQLCKKALQKKYNLPKRDCPLIGMITRLTDQKGLDLVVDKFQDLMKMDIQLVLLGTGDPWYHEVFKRYARTYPAKVAIQLSFDERSAHEIEAGADIFLMPSRYEPCGLNQLYSLKYGTVPVVRSTGGLADTITDVRQAPVKQGRANGFSFKNYNADLLFATIVRAVDLFKDKTQWKNLMINGMSQDWSLEKSAKEYLALYEKMVKKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXG8</accession>
    <name>A0A0M2UXG8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02147</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19164">
        <property type="protein sequence ID" value="KKO19164"/>
        <property type="gene ID" value="BROFUL_02147"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2676"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="88"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="339"/>
            <end position="454"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="624"/>
            <end position="791"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="914"/>
            <end position="947"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="948"/>
            <end position="981"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="982"/>
            <end position="1015"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1041" mass="117551" checksum="BF31CE6BEE4F4967" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXM2</accession>
    <name>A0A0M2UXM2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00423</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000057">
        <property type="protein sequence ID" value="KKO20838.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20838">
        <property type="protein sequence ID" value="KKO20838"/>
        <property type="gene ID" value="BROFUL_00423"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="59"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="59"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20838.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="82" mass="9594" checksum="8140329F74E84009" modified="2015-11-11" version="1">MIISSTIFSITCARVCCSYFQDTGDGARLRKGYDCPKHQFERDKKKRLAKLVKRGKKFPEYKREEKDKRGQPDCPRHTTGRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXM6</accession>
    <name>A0A0M2UXM6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Cyclic dehypoxanthine futalosine synthase</fullName>
            <shortName evidence="6">Cyclic DHFL synthase</shortName>
            <ecNumber evidence="6">1.21.98.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Dehypoxanthine futalosine cyclase</fullName>
            <shortName evidence="6">DHFL cyclase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Menaquinone biosynthetic enzyme MqnC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">mqnC</name>
        <name evidence="8" type="ORF">BROFUL_00428</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>dehypoxanthine futalosine + S-adenosyl-L-methionine = 5'-deoxyadenosine + cyclic dehypoxanthinylfutalosinate + H(+) + L-methionine</text>
            <dbReference type="Rhea" id="RHEA:33083"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:58864"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:64270"/>
            <dbReference type="EC" id="1.21.98.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="6">Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Quinol/quinone metabolism; menaquinone biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the radical SAM superfamily. MqnC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.21.98.1" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000057">
        <property type="protein sequence ID" value="KKO20843.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20843">
        <property type="protein sequence ID" value="KKO20843"/>
        <property type="gene ID" value="BROFUL_00428"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.532"/>
    <dbReference type="UniPathway" id="UPA00079"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046992">
        <property type="term" value="F:oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016765">
        <property type="term" value="F:transferase activity, transferring alkyl or aryl (other than methyl) groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009234">
        <property type="term" value="P:menaquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00992">
        <property type="entry name" value="MqnC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045567">
        <property type="entry name" value="CofH/MnqC-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022431">
        <property type="entry name" value="Cyclic_DHFL_synthase_mqnC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034405">
        <property type="entry name" value="F420"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020050">
        <property type="entry name" value="FO_synthase_su2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43076">
        <property type="entry name" value="PTHR43076"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19288">
        <property type="entry name" value="CofH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00343">
        <property type="entry name" value="aminofutalosine_synthase_(mqnE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03699">
        <property type="entry name" value="menaquin_MqnC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00423">
        <property type="entry name" value="TIGR00423"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 6" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="4 6" id="KW-0408">Iron</keyword>
    <keyword evidence="5 6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="6" id="KW-0474">Menaquinone biosynthesis</keyword>
    <keyword evidence="3 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="7">
        <location>
            <begin position="55"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="69"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="73"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="76"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20843.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="365" mass="41381" checksum="6432F7079377C848" modified="2015-11-11" version="1">MDTISCEIEEIIEKSIHGKRLSPEEGIRLFSVKDITILGIAADEVCKRKHPENYRTYIIDRNINYTNICTSGCKFCAFYKTSEHRDGYVIPRDALFKKIEETLSLGGRQILMQGGLHPSLILDFYTDLLMSIKKEFAVHIHAFSPPEIVHFSKLQGIPVRDVIERLKDAGLDSIPGGGAEILVDRCRSLLSPNKCTAQEWLDVMREAHKLGMRTTATMMFGHIETIEERIEHLEKIRGVQDETGGFTAFIAWTFQPRNTQLDPFLSSQYQDMGLIGSYDYLKTLAVARLYLDNISNIQASWVTQGAKIAQLSLKCGANDMGSTMIEENVVRAAGVSYQMGKDEIEFLINDLGYTARQRDLYYRVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXQ5</accession>
    <name>A0A0M2UXQ5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00912</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000110">
        <property type="protein sequence ID" value="KKO20355.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20355">
        <property type="protein sequence ID" value="KKO20355"/>
        <property type="gene ID" value="BROFUL_00912"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="5"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="48"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="82"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="192"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="338"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="447"/>
            <end position="480"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20355.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="523" mass="61467" checksum="9FAFD1CF90198F81" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY43</accession>
    <name>A0A0M2UY43_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">50S ribosomal protein L23</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rplW</name>
        <name evidence="6" type="ORF">BROFUL_01921</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the universal ribosomal protein uL23 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19394">
        <property type="protein sequence ID" value="KKO19394"/>
        <property type="gene ID" value="BROFUL_01921"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2390"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01369_B">
        <property type="entry name" value="Ribosomal_L23_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012678">
        <property type="entry name" value="Ribosomal_L23/L15e_core_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013025">
        <property type="entry name" value="Ribosomal_L25/23"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11620">
        <property type="entry name" value="PTHR11620"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00276">
        <property type="entry name" value="Ribosomal_L23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54189">
        <property type="entry name" value="SSF54189"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="93" mass="10790" checksum="186E66824F282642" modified="2015-11-11" version="1">MDAYHIIKRPLRTEKSVADGARTNSYHFEVDLKANKIQIKEAVEKFFNVKVADVRTLVKKGKQRRVRFKIGRTKDWKKAIVTLKEGNAIDLGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY65</accession>
    <name>A0A0M2UY65_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UPF0434 protein BROFUL_00245</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00245</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0434 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000030">
        <property type="protein sequence ID" value="KKO21028.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21028">
        <property type="protein sequence ID" value="KKO21028"/>
        <property type="gene ID" value="BROFUL_00245"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.302"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01187">
        <property type="entry name" value="UPF0434"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005651">
        <property type="entry name" value="Trm112-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03966">
        <property type="entry name" value="Trm112p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21028.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="60" mass="6755" checksum="F2A0410072C9C754" modified="2015-11-11" version="1">MITKELLDILACPLCKTDVCLEGDSIVCRTCGRRYPIRDDIPVMLVDEAKLPEEPKKIHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY93</accession>
    <name>A0A0M2UY93_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00215</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000026">
        <property type="protein sequence ID" value="KKO21058.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21058">
        <property type="protein sequence ID" value="KKO21058"/>
        <property type="gene ID" value="BROFUL_00215"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2010.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010428">
        <property type="entry name" value="Zincin_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038555">
        <property type="entry name" value="Zincin_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06262">
        <property type="entry name" value="Zincin_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="53"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="80"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21058.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="243" mass="27591" checksum="F17F3C49D8A866CB" modified="2015-11-11" version="1">MAKDLESLKYCNCGEAYHTGELNQREGMKCPGCGMELFPLVADKTSARDSYELCAVLGYFGIIALVGALGGVMVVHGWNFWVTFAMLGGILYLTARLFLGKYKISRMHEQTPDECIPGHQDTRHVTVFDQLVTDAMNELPRNLRNRLSNVSVVIEDRPDNFILEKMGLMKNRTLLGLFQGVPLSKKSVWQPAVLPERITIFRKNIENLCHSDEEIKRKITEVVRHEVAHFVGFTENEIRQLGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYL4</accession>
    <name>A0A0M2UYL4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00092</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000010">
        <property type="protein sequence ID" value="KKO21173.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21173">
        <property type="protein sequence ID" value="KKO21173"/>
        <property type="gene ID" value="BROFUL_00092"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.116"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008023">
        <property type="entry name" value="DUF748"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036737">
        <property type="entry name" value="OmpA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05359">
        <property type="entry name" value="DUF748"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21173.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="575" mass="62566" checksum="4EF79E32A51E60E2" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYR4</accession>
    <name>A0A0M2UYR4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative signal peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01649</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19614">
        <property type="protein sequence ID" value="KKO19614"/>
        <property type="gene ID" value="BROFUL_01649"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2037"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007557">
        <property type="entry name" value="PSP1_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04468">
        <property type="entry name" value="PSP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51411">
        <property type="entry name" value="PSP1_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PSP1 C-terminal" evidence="1">
        <location>
            <begin position="61"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51411"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="289" mass="33196" checksum="DDDAD515EC1368E9" modified="2015-11-11" version="1">MRHILTIRYGVLKNTSDFYTSFDALKKGDSVIIRSHRGVEFGEVVTKVKEINDDATTENLGEILRKATPDDREKQKKIHDELIPTEFKFCQKKIKDHNLVMKLASVEHLFGTKKIIFYYLANGRVDFRELVKDLAKEYQARIEMKQIGVRDEARLLADYEHCGRELCCRSFLKNLEPVTMKMAKNQKATLDPSKISGRCGRLMCCLRYEDKVYEELKYTVPRKGSVVKTTQGIGEVVSYDVLQQQVTIELENGSKISTSVSDIIDKVRDSVRQKETACDHLCEKDCGLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYS1</accession>
    <name>A0A0M2UYS1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01181</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000126">
        <property type="protein sequence ID" value="KKO20106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20106">
        <property type="protein sequence ID" value="KKO20106"/>
        <property type="gene ID" value="BROFUL_01181"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="52" mass="5608" checksum="AEC1E51A49AE4F29" modified="2015-11-11" version="1">MISFADWKKPATCGGGKKPKCRESSAKTEGIWLTMTLTNEISSFLKTTGIGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYT6</accession>
    <name>A0A0M2UYT6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00295</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000034">
        <property type="protein sequence ID" value="KKO20982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20982">
        <property type="protein sequence ID" value="KKO20982"/>
        <property type="gene ID" value="BROFUL_00295"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013656">
        <property type="entry name" value="PAS_4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08448">
        <property type="entry name" value="PAS_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PAS" evidence="2">
        <location>
            <begin position="10"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="3">
        <location>
            <begin position="80"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="158"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="180" mass="21136" checksum="080A0663FFC741BA" modified="2015-11-11" version="1">MSKVVYKLMENELMRLLFSGVTDLTYIYDMDGNILFVNKVFEKFTGHRPEEFYGRPFAALFDEENLKKAKDAFAETLKGKSPEYKLSFQNTRILCEYRNFPIKDQSGNLVGVMGIARDVTARGREEEQLKALNESLEKRVIEHTSRLVELNKELMRETNERERLEKELKHGMEKQKQSML</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYU4</accession>
    <name>A0A0M2UYU4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00480</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000064">
        <property type="protein sequence ID" value="KKO20795.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20795">
        <property type="protein sequence ID" value="KKO20795"/>
        <property type="gene ID" value="BROFUL_00480"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20795.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="440" mass="50989" checksum="58DCF7A2DAAECEF8" modified="2015-11-11" version="1" fragment="single">ASTDNAGDIITGVSESGFTYKDFISGNFRAQYEGRWADGNDDDHDTYDYLRFKTKPFFRDKITLSGSGRISADLDGREPESGAFRDVLDSYDHQYNGRIYYLHADIKDPVVEKSSLRIGRQYQYSIENILFDGAKYEQQIGPVESYIFGGLRVSHYSSAYYDTVAGSGVAFRPFVDTRTTLDYVRIVDDEFIDDEVGLNLWQKIHDDFNFYGRYTLLNTMSKDFLVKLSWDKFDWDANIQISYYRFLHSLGEESNNISPFFELLGTLQPFELISVTGYKGLGEKFGISGGFDYRSVIDKDDEDTFNHDYNRMFLSFDVNNLFFKESKASFTIEYWNVKGIDHTVDVGVDYDKKFGKLDVGVGTSYSVYKYNYVGSNDLQTVMDNEYTRDIEQKIDVRTYYLRIKYLLTKQSDITMRWSSEISDTDPDTFHQLLLSYSVNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYU6</accession>
    <name>A0A0M2UYU6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Protein metal binding site</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01669</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19634">
        <property type="protein sequence ID" value="KKO19634"/>
        <property type="gene ID" value="BROFUL_01669"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021655">
        <property type="entry name" value="Put_metal-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11617">
        <property type="entry name" value="Cu-binding_MopE"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644281" evidence="2">
        <location>
            <begin position="26"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="26"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="35"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="66"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="99"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="399" mass="43495" checksum="7069A400DDCA64E9" modified="2015-11-11" version="1">MHIVKGGLVVLLLYCLVAWVSANHARGNDADNSGSPVHDNDDDVDDITDKKQGVHDDDKNKEDDKRKKRKNKHKHNNKCKHKDKDDKDDDDDDDGSGHCDGDSDGYSRKTDCDDNDATVNPGATEIPYNGKDDDCNASTPDDDLDGDGYAKVKDCDDNNASVNPAAKEICDGVDNNCDGQIDEGLTTTFYEDADGDGYGNPQVATTACSQPAGSVANNTDCDDTNAAVNPGATEIKKNGVDDDCNASTPDDDTGVILPPDPGEAGKKTLLGIDTDGDGVRDDIQRYIHFTYPDDKKLRLGLTYYAMEFQCVLKDANDREAAYEHANKMARHGECLFYLKGEESIGIRRALRAKILNTRERSIAYIKYSDNLGGRIIMSAPQKEWKDSCSFDVDATGGDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYY5</accession>
    <name>A0A0M2UYY5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Cysteine synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01621</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 3">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19689.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19689">
        <property type="protein sequence ID" value="KKO19689"/>
        <property type="gene ID" value="BROFUL_01621"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2000"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004124">
        <property type="term" value="F:cysteine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006535">
        <property type="term" value="P:cysteine biosynthetic process from serine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005856">
        <property type="entry name" value="Cys_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005859">
        <property type="entry name" value="CysK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01139">
        <property type="entry name" value="cysK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01136">
        <property type="entry name" value="cysKM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PALP" evidence="5">
        <location>
            <begin position="9"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="3">
        <location>
            <begin position="179"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="75"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="267"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="4">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR605856-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR605856-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19689.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="309" mass="32638" checksum="E872692F2CE84A5A" modified="2015-11-11" version="1">MAKIYEDITKTIGDTPLVKLNNVTKGLGSTVVAKMESFNPLGSVKDRIGIAMIEAAEKAGLVGKSTIIIEPTSGNTGIALAFVAAARGYKLILTMPDTMSIERRDLLKAFGAEIVLTPGAEGMKGAVSKAEELQKNTPNSFIPQQFKNLANPEIHRKTTAEEIWNDTDGRIDIFVGGVGTGGTITGVGEVIKERKPSLKVVAVEPADSPVLSGGKPGPHKIQGLGAGFVPDILNMKVIDEIIAVKNEQAFAASRQLARQEGILAGISSGAAMHAALQVAARPENKGKLIVVVLPDTGERYLSTVLFKEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYZ3</accession>
    <name>A0A0M2UYZ3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Na+/H+ antiporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_01587</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000168">
        <property type="protein sequence ID" value="KKO19699.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19699">
        <property type="protein sequence ID" value="KKO19699"/>
        <property type="gene ID" value="BROFUL_01587"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015299">
        <property type="term" value="F:solute:proton antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006812">
        <property type="term" value="P:cation transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006153">
        <property type="entry name" value="Cation/H_exchanger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038770">
        <property type="entry name" value="Na+/solute_symporter_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00999">
        <property type="entry name" value="Na_H_Exchanger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="375"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="407"/>
            <end position="426"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="433"/>
            <end position="451"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="463"/>
            <end position="488"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="497"/>
            <end position="516"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="528"/>
            <end position="551"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="558"/>
            <end position="580"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="600"/>
            <end position="632"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="652"/>
            <end position="669"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="681"/>
            <end position="699"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="711"/>
            <end position="730"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="742"/>
            <end position="760"/>
        </location>
    </feature>
    <feature type="domain" description="Na_H_Exchanger" evidence="6">
        <location>
            <begin position="383"/>
            <end position="762"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="124"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="293"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="124"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="195"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="236"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="252"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="301"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="333"/>
            <end position="358"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00999"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19699.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="796" mass="86482" checksum="97DEBDA8462E1F45" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ12</accession>
    <name>A0A0M2UZ12_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MOSC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00401</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000054">
        <property type="protein sequence ID" value="KKO20865.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20865">
        <property type="protein sequence ID" value="KKO20865"/>
        <property type="gene ID" value="BROFUL_00401"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.500"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030151">
        <property type="term" value="F:molybdenum ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005302">
        <property type="entry name" value="MoCF_Sase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011037">
        <property type="entry name" value="Pyrv_Knase-like_insert_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005163">
        <property type="entry name" value="YiiM-like_3-alpha_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03475">
        <property type="entry name" value="3-alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03473">
        <property type="entry name" value="MOSC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50800">
        <property type="entry name" value="SSF50800"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51340">
        <property type="entry name" value="MOSC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MOSC" evidence="1">
        <location>
            <begin position="25"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51340"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20865.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="209" mass="23385" checksum="3DA8E8166CF575C3" modified="2015-11-11" version="1">MPRTMVGIHATGSPDKPWQTGIFKAPVYGHVWLGTLNLDGDAQADLSVHGGPHKAINAYPSEHYPYWKQTLHLPDMPYGAFGENFTTSGLLEDEVCIGDVFHAGEALVQVSQPRQPCWKIERRWEIQDFGARMKQTGKTGWYFRVLREGYVEAGNTLVLTGRSFPQWTVATAYAIMRNRRTDATAARELARCPALSPRWQENLIAATPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ80</accession>
    <name>A0A0M2UZ80_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ADP-heptose--LPS heptosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01016</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000119">
        <property type="protein sequence ID" value="KKO20271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20271">
        <property type="protein sequence ID" value="KKO20271"/>
        <property type="gene ID" value="BROFUL_01016"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009103">
        <property type="term" value="P:lipopolysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03789">
        <property type="entry name" value="GT9_LPS_heptosyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002201">
        <property type="entry name" value="Glyco_trans_9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011910">
        <property type="entry name" value="RfaF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01075">
        <property type="entry name" value="Glyco_transf_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02195">
        <property type="entry name" value="heptsyl_trn_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20271.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="348" mass="39081" checksum="EB810B9429DE814F" modified="2015-11-11" version="1">MEKPANIKNIIIRSPNWVGDVVMATPAFRCIRENFPDAKITLVLKSYVQRLIEDTPWFDEFLLLDKKDQASQRAHAISIIERIRSGKYDMGFLFPNSFSSACMFWFGGVKRRIGYRRDARSWLLTDGIRRLSENGRFLPTYMGDYYLRLCTEVGCEVKSKDLELFVSDAAECRADEIGKKYHLNNGHPFILLNPGAAYGSSKCWTAEGFAGTADLIKSQLECTIAVVGAPHEAQLATDIEQAAKSRVINLAHEVVSLDVLKALIKRCSLLITVDSGPRHIAVAFQRPVVTLMGPNDPRYTYTPAEIGEVIHANVDCLACHLKICPNDHRCMTQIQPEMVARSCLELLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZB4</accession>
    <name>A0A0M2UZB4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Beta_helix domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00113</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000015">
        <property type="protein sequence ID" value="KKO21152.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21152">
        <property type="protein sequence ID" value="KKO21152"/>
        <property type="gene ID" value="BROFUL_00113"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039448">
        <property type="entry name" value="Beta_helix"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006626">
        <property type="entry name" value="PbH1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13229">
        <property type="entry name" value="Beta_helix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00710">
        <property type="entry name" value="PbH1"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="SSF51126"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="73"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="domain" description="Beta_helix" evidence="2">
        <location>
            <begin position="221"/>
            <end position="410"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO21152.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="614" mass="67660" checksum="35712E9D863301CB" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZD0</accession>
    <name>A0A0M2UZD0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF1722 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01441</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000147">
        <property type="protein sequence ID" value="KKO19839.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19839">
        <property type="protein sequence ID" value="KKO19839"/>
        <property type="gene ID" value="BROFUL_01441"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1777"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007553">
        <property type="entry name" value="2-thiour_desulf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013560">
        <property type="entry name" value="DUF1722"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04463">
        <property type="entry name" value="2-thiour_desulf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08349">
        <property type="entry name" value="DUF1722"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1722" evidence="1">
        <location>
            <begin position="130"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19839.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="255" mass="29249" checksum="58BE800B4CDFE9BC" modified="2015-11-11" version="1">MGRPESPRLITIKTGIDHTEKMLQWTEKKLTELEQRNLCGFIFKSKSPSSGIAGVKVYKPSGVPSQRGVGIFGGAFMKRFPLTPVIDDVRLHNPQLRKNFIEGVCVFQRWQELLKSRDINDLVGFHTSHKLLMLAHSPRHYALLGQLVADAKGVKRKDLYASYIQGFMEGMRLLATPAKNANVLMRIAGYLKKFITADEKQELLEVIENYRQCLVPLIVPVTLVKHYARKYRIVYLEKQRYLNPHPVELMPQNHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZG3</accession>
    <name>A0A0M2UZG3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00249</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000031">
        <property type="protein sequence ID" value="KKO21000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21000">
        <property type="protein sequence ID" value="KKO21000"/>
        <property type="gene ID" value="BROFUL_00249"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009758">
        <property type="entry name" value="DUF1326"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07040">
        <property type="entry name" value="DUF1326"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="226" mass="25375" checksum="DB45D78A1537447E" modified="2015-11-11" version="1">MFLNRSLFAGCIVSILLCWFGRAVVAEPAWSIEGEYFEGCTCNPGCPCLFGSEPTHNKTCKISGVFHIRTGNYGQHTLDGQTVIGITDLTAQPDKNWIVFYLDEKAAAVQKNALLDIFKNHVFRFAKVPHDRITVRYVPLHVESSPWRKKAIAANNLTLDIELLRGVGDPGKPTQIVNKNFSLWAKEFDMALNMGKAATHRFQEGNREWNYDGRSGFATAFRFTGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZI6</accession>
    <name>A0A0M2UZI6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00897</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000109">
        <property type="protein sequence ID" value="KKO20376.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20376">
        <property type="protein sequence ID" value="KKO20376"/>
        <property type="gene ID" value="BROFUL_00897"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043707">
        <property type="entry name" value="DUF5647"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18882">
        <property type="entry name" value="DUF5647"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20376.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="90" mass="10404" checksum="0FDE725D905404D2" modified="2015-11-11" version="1">MIGKNIFVERNSMLVKEFDRYIIEHPEFADGIPDNALVVMQIEGDEEFNNWARETARGIAEKNTPIVYVTITELKPVRSRIEKLKLELVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZV4</accession>
    <name>A0A0M2UZV4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Chaperone protein DnaJ</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00161</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000017">
        <property type="protein sequence ID" value="KKO21115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21115">
        <property type="protein sequence ID" value="KKO21115"/>
        <property type="gene ID" value="BROFUL_00161"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.199"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031072">
        <property type="term" value="F:heat shock protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06257">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd10719">
        <property type="entry name" value="DnaJ_zf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001623">
        <property type="entry name" value="DnaJ_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008971">
        <property type="entry name" value="HSP40/DnaJ_pept-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001305">
        <property type="entry name" value="HSP_DnaJ_Cys-rich_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036410">
        <property type="entry name" value="HSP_DnaJ_Cys-rich_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036869">
        <property type="entry name" value="J_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00226">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00684">
        <property type="entry name" value="DnaJ_CXXCXGXG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00625">
        <property type="entry name" value="JDOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00271">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46565">
        <property type="entry name" value="SSF46565"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49493">
        <property type="entry name" value="SSF49493"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57938">
        <property type="entry name" value="SSF57938"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50076">
        <property type="entry name" value="DNAJ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51188">
        <property type="entry name" value="ZF_CR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0235">DNA replication</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="J" evidence="3">
        <location>
            <begin position="4"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="domain" description="CR-type" evidence="4">
        <location>
            <begin position="135"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="CR-type" evidence="2">
        <location>
            <begin position="135"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00546"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO21115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="229" mass="24662" checksum="52D522FFFF0759A6" modified="2015-11-11" version="1">MEEDFYKILGVDRNASGEEIKKAYRKIALKYHPDRNPGNKEAEQIFKKAAEAYGVLGDPDKKRKYDQFGMDGLKGTGAPGYSTFEDIFDAFGDIFGGGSIFEDFFGGGRARGKAARKGASLKCDIEVDFKDVATGVEKKIELTKREVCDVCRGSGARDGTSPAVCPYCRGKGEVQQSQGFFTLRTTCPKCHGAGKIIESPCAKCGGSGRCPKKSIISIQVPPGVEDSTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZX2</accession>
    <name>A0A0M2UZX2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative heme protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01214</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000132">
        <property type="protein sequence ID" value="KKO20064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20064">
        <property type="protein sequence ID" value="KKO20064"/>
        <property type="gene ID" value="BROFUL_01214"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036280">
        <property type="entry name" value="Multihaem_cyt_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48695">
        <property type="entry name" value="SSF48695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="256" mass="29050" checksum="4E69F99CFC6E5A0C" modified="2015-11-11" version="1">MITYFLRLIVCLGIVVLPRVAWGNDRHPAKPDNLSFPDGSCTDRCHVNYLTYYSLYEGEIFRHKSHSLSQGLECNRCHNNDAAHTKTHGGLLIQKKDCWACHHKRGYETTTGSFSKNQELSFYHGDCIRCHTQVKDYLKGEIQGMGIKIPDWMSAAVSCADCHKLESDGLSFKAVRNHCIACHNSDYGLLHDAWRETLDRQIKQFCENGAGTQGARDILRLVQSYGMHNFRLSQFLLKSIGNASEGEHTRNALFKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V015</accession>
    <name>A0A0M2V015_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Protein-L-isoaspartate O-methyltransferase</fullName>
            <ecNumber evidence="2">2.1.1.77</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">L-isoaspartyl protein carboxyl methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="2">Protein L-isoaspartyl methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="2">Protein-beta-aspartate methyltransferase</fullName>
            <shortName evidence="2">PIMT</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">pcm</name>
        <name evidence="4" type="ORF">BROFUL_00077</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>[protein]-L-isoaspartate + S-adenosyl-L-methionine = [protein]-L-isoaspartate alpha-methyl ester + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:12705"/>
            <dbReference type="Rhea" id="RHEA-COMP:12143"/>
            <dbReference type="Rhea" id="RHEA-COMP:12144"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:90596"/>
            <dbReference type="ChEBI" id="CHEBI:90598"/>
            <dbReference type="EC" id="2.1.1.77"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the methyltransferase superfamily. L-isoaspartyl/D-aspartyl protein methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.77" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000008">
        <property type="protein sequence ID" value="KKO21195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21195">
        <property type="protein sequence ID" value="KKO21195"/>
        <property type="gene ID" value="BROFUL_00077"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.95"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004719">
        <property type="term" value="F:protein-L-isoaspartate (D-aspartate) O-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030091">
        <property type="term" value="P:protein repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00090">
        <property type="entry name" value="PIMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000682">
        <property type="entry name" value="PCMT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11579">
        <property type="entry name" value="PTHR11579"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00080">
        <property type="entry name" value="pimt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01279">
        <property type="entry name" value="PCMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 4" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="32"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO21195.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="277" mass="30890" checksum="2DCAD3CBDEB18067" modified="2015-11-11" version="1">MNRCDDTGNPGQETIRCWRGKEFVKIGNRMRIISGAVLVLISSFIFMFFGNKNKVSAMGDAKSVMDEDAFTRQRKRMVEEQIACRGVKDTRVLEAMEFVPRHLFIPEETRFSSYYDQPVPVGFGQTISQPYIVAFMTELLQTQAGSVVLEVGTGSGYQAAVLARLVKQVYTIELVEELGKEARNRLKTLGYNNVEVMIGDGYKGWPEHAPFDAIIVTAAAEHIPQPLIDQLKPGGRMVIPVGGVYAVQDLMLITKDASSKVVKESVIPVRFVPLLRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V018</accession>
    <name>A0A0M2V018_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA helicase</fullName>
            <ecNumber evidence="3">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_00674</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the helicase family. UvrD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20556">
        <property type="protein sequence ID" value="KKO20556"/>
        <property type="gene ID" value="BROFUL_00674"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.860"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013986">
        <property type="entry name" value="DExx_box_DNA_helicase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014017">
        <property type="entry name" value="DNA_helicase_UvrD-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000212">
        <property type="entry name" value="DNA_helicase_UvrD/REP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014016">
        <property type="entry name" value="UvrD-like_ATP-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11070">
        <property type="entry name" value="PTHR11070"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00580">
        <property type="entry name" value="UvrD-helicase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13361">
        <property type="entry name" value="UvrD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51198">
        <property type="entry name" value="UVRD_HELICASE_ATP_BIND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51217">
        <property type="entry name" value="UVRD_HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 9" id="KW-0347">Helicase</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UvrD-like helicase ATP-binding" evidence="7">
        <location>
            <begin position="5"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="domain" description="UvrD-like helicase C-terminal" evidence="8">
        <location>
            <begin position="282"/>
            <end position="555"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="26"/>
            <end position="33"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="735" mass="83744" checksum="15C39A3042B8A56E" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V029</accession>
    <name>A0A0M2V029_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Lipoyl synthase</fullName>
            <ecNumber evidence="6">2.8.1.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Lip-syn</fullName>
            <shortName evidence="6">LS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Lipoate synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Lipoic acid synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Sulfur insertion protein LipA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">lipA</name>
        <name evidence="8" type="ORF">BROFUL_00049</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>[[Fe-S] cluster scaffold protein carrying a second [4Fe-4S](2+) cluster] + 4 H(+) + N(6)-octanoyl-L-lysyl-[protein] + 2 oxidized [2Fe-2S]-[ferredoxin] + 2 S-adenosyl-L-methionine = (R)-N(6)-dihydrolipoyl-L-lysyl-[protein] + 2 5'-deoxyadenosine + [[Fe-S] cluster scaffold protein] + 4 Fe(3+) + 2 hydrogen sulfide + 2 L-methionine + 2 reduced [2Fe-2S]-[ferredoxin]</text>
            <dbReference type="Rhea" id="RHEA:16585"/>
            <dbReference type="Rhea" id="RHEA-COMP:9928"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="Rhea" id="RHEA-COMP:10475"/>
            <dbReference type="Rhea" id="RHEA-COMP:14568"/>
            <dbReference type="Rhea" id="RHEA-COMP:14569"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:29034"/>
            <dbReference type="ChEBI" id="CHEBI:29919"/>
            <dbReference type="ChEBI" id="CHEBI:33722"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:78809"/>
            <dbReference type="ChEBI" id="CHEBI:83100"/>
            <dbReference type="EC" id="2.8.1.8"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="6">Binds 2 [4Fe-4S] clusters per subunit. One cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Protein modification; protein lipoylation via endogenous pathway; protein N(6)-(lipoyl)lysine from octanoyl-[acyl-carrier-protein]: step 2/2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the radical SAM superfamily. Lipoyl synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.8.1.8" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000007">
        <property type="protein sequence ID" value="KKO21210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21210">
        <property type="protein sequence ID" value="KKO21210"/>
        <property type="gene ID" value="BROFUL_00049"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.62"/>
    <dbReference type="UniPathway" id="UPA00538">
        <property type="reaction ID" value="UER00593"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016992">
        <property type="term" value="F:lipoate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102552">
        <property type="term" value="F:lipoyl synthase activity (acting on glycine-cleavage complex H protein"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102553">
        <property type="term" value="F:lipoyl synthase activity (acting on pyruvate dehydrogenase E2 protein)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009249">
        <property type="term" value="P:protein lipoylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00206">
        <property type="entry name" value="Lipoyl_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031691">
        <property type="entry name" value="LIAS_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003698">
        <property type="entry name" value="Lipoyl_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10949">
        <property type="entry name" value="PTHR10949"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16881">
        <property type="entry name" value="LIAS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005963">
        <property type="entry name" value="Lipoyl_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00271">
        <property type="entry name" value="lipoyl_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00510">
        <property type="entry name" value="lipA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 6" id="KW-0408">Iron</keyword>
    <keyword evidence="5 6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Radical SAM core" evidence="7">
        <location>
            <begin position="44"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="32"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="37"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="43"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="58"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="62"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="65"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="271"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO21210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="283" mass="31753" checksum="17ABAB998AD5B5BA" modified="2015-11-11" version="1">MRPPWLKVKLPSGKNFTEIKSILREEQLHTVCEEALCPNIGECFEQRTATFLILGDICSRQCGFCAVRKGQPSVADAGEPQRIAAAILKMKLTYVVITSVTRDDLSDGGASVYAEVITLIRKHIKDCKVEVLIPDFAGSSAALESVIYARPDVINHNVETVSRLYLQVRPTANYRRSLRILEQIHQKDPSLGIKSGFMVGLGETWDEILGVMRDIRNAHCDTLTIGQYLSPRGNALPIHRYYTPDEFERLRLEGERMGFHHVASGPLVRSSYHAKMQFKNRGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0D2</accession>
    <name>A0A0M2V0D2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Adenine-specific DNA methylase</fullName>
            <ecNumber evidence="5">2.1.1.72</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">dam_1</name>
        <name evidence="5" type="ORF">BROFUL_00639</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the N(4)/N(6)-methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.72" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20656">
        <property type="protein sequence ID" value="KKO20656"/>
        <property type="gene ID" value="BROFUL_00639"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.808"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008170">
        <property type="term" value="F:N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009007">
        <property type="term" value="F:site-specific DNA-methyltransferase (adenine-specific) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002941">
        <property type="entry name" value="DNA_methylase_N4/N6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002295">
        <property type="entry name" value="N4/N6-MTase_EcoPI_Mod-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01555">
        <property type="entry name" value="N6_N4_Mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00506">
        <property type="entry name" value="D21N6MTFRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N6_N4_Mtase" evidence="4">
        <location>
            <begin position="142"/>
            <end position="425"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="712" mass="81130" checksum="519C225B574E67FA" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0P5</accession>
    <name>A0A0M2V0P5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00515</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000071">
        <property type="protein sequence ID" value="KKO20756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20756">
        <property type="protein sequence ID" value="KKO20756"/>
        <property type="gene ID" value="BROFUL_00515"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="88" mass="9928" checksum="1F2348D71415F36C" modified="2015-11-11" version="1">MTKIITPEAVVAYSQCLRKAFLILCSERQGMPHDYVRLLQEQARRNRIKYVNLIEQEHPGVSTGNAAVLLNGEDVLLEVPLRLHDSAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0T3</accession>
    <name>A0A0M2V0T3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00926</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000112">
        <property type="protein sequence ID" value="KKO20344.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20344">
        <property type="protein sequence ID" value="KKO20344"/>
        <property type="gene ID" value="BROFUL_00926"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1166"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2020.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018841">
        <property type="entry name" value="DUF2442"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036782">
        <property type="entry name" value="NE0471-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10387">
        <property type="entry name" value="DUF2442"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143880">
        <property type="entry name" value="SSF143880"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="82"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20344.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="104" mass="11791" checksum="97725BE1AAC88329" modified="2015-11-11" version="1">MNPRVKAVKARDDYKLEITFSNGEVGMYDCSPLLNFGVFTELKDKIYFQQARAAHGTVVWPHEQDICPDTSYLDSVKIKKSPNKSLQRTGTKSRASTEFCRSAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1G0</accession>
    <name>A0A0M2V1G0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00294</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0751 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000034">
        <property type="protein sequence ID" value="KKO20981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20981">
        <property type="protein sequence ID" value="KKO20981"/>
        <property type="gene ID" value="BROFUL_00294"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016772">
        <property type="entry name" value="UCP020408"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10087">
        <property type="entry name" value="DUF2325"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF020408">
        <property type="entry name" value="UCP020408"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="100" mass="11490" checksum="67F05D5B11F81EE9" modified="2015-11-11" version="1">MKYKISVIIVGGDHLGSIPRELDKIGITEIQHLTGRGGQKMRGKIPENVDFIILLYDFVNHNLAYKVKRLAVNRKIPIIYAKRSWSSIYQKIKDSRITIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1I8</accession>
    <name>A0A0M2V1I8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00703</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20584.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20584">
        <property type="protein sequence ID" value="KKO20584"/>
        <property type="gene ID" value="BROFUL_00703"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004089">
        <property type="term" value="F:carbonate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1050.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036874">
        <property type="entry name" value="Carbonic_anhydrase_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53056">
        <property type="entry name" value="SSF53056"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20584.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="198" mass="22904" checksum="E4ECA084457F2ABC" modified="2015-11-11" version="1">MPHAKDLPRESILPFVIMLILLLVSVSRIHAALAADEPQNDNQPERPAKYSKFFDEKTKWCDSLIITCTDFRFASATQEFINNRLGFKGNYDYISIPGSIRNLLDRNTRDLVLNNFGVSVRLHHVKRVIILGHQDCGIGYGGSKNFQEPNDEYKAICKDLKKARTRMGIRFPHLKVYLYYATIVSKDHQRIYNFEQIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2A1</accession>
    <name>A0A0M2V2A1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00015</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000004">
        <property type="protein sequence ID" value="KKO21251.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21251">
        <property type="protein sequence ID" value="KKO21251"/>
        <property type="gene ID" value="BROFUL_00015"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.23"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21251.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="94" mass="10898" checksum="90AB711F3B4F6F7D" modified="2015-11-11" version="1">MEALWLKSQGEPHNKIAQLTGVSINVVTQYLREYEAGGIEKLKEINFYRPESKLIEYKQTIEDSFREQPPATIKEAMSAIEELTRLKRSEKQVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2C8</accession>
    <name>A0A0M2V2C8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00412</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000056">
        <property type="protein sequence ID" value="KKO20854.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20854">
        <property type="protein sequence ID" value="KKO20854"/>
        <property type="gene ID" value="BROFUL_00412"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20854.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="223" mass="25172" checksum="019E75C08C41834E" modified="2015-11-11" version="1">MISGRLRWVCVYLITLSLIFTSGCRGNKSPQEVAQYFWNAMKVQDVESCRKYATAKTRALIDPSGERFKNAVVTFGKIVIDGDLATIDTTARLSGHDAETSLPFQTILKKEDGEWRVDYVQTKETIREDNSFSEITKNLRDLGGKLSERVNEALGEMKQKMPEYEEKIKKLGDVASKKMDEALERCAAEIKKGIEKLDGIMDEILKKEGEQDKQEEPAGDVKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2H5</accession>
    <name>A0A0M2V2H5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Glucose-6-phosphate 1-dehydrogenase</fullName>
            <shortName evidence="5">G6PD</shortName>
            <ecNumber evidence="5">1.1.1.49</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">zwf</name>
        <name evidence="9" type="ORF">BROFUL_00374</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the oxidation of glucose 6-phosphate to 6-phosphogluconolactone.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>D-glucose 6-phosphate + NADP(+) = 6-phospho-D-glucono-1,5-lactone + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:15841"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:57955"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:61548"/>
            <dbReference type="EC" id="1.1.1.49"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Carbohydrate degradation; pentose phosphate pathway; D-ribulose 5-phosphate from D-glucose 6-phosphate (oxidative stage): step 1/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the glucose-6-phosphate dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.49" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000047">
        <property type="protein sequence ID" value="KKO20904.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20904">
        <property type="protein sequence ID" value="KKO20904"/>
        <property type="gene ID" value="BROFUL_00374"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.464"/>
    <dbReference type="UniPathway" id="UPA00115">
        <property type="reaction ID" value="UER00408"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004345">
        <property type="term" value="F:glucose-6-phosphate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006006">
        <property type="term" value="P:glucose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006098">
        <property type="term" value="P:pentose-phosphate shunt"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00966">
        <property type="entry name" value="G6PD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001282">
        <property type="entry name" value="G6P_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019796">
        <property type="entry name" value="G6P_DH_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022675">
        <property type="entry name" value="G6P_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022674">
        <property type="entry name" value="G6P_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23429">
        <property type="entry name" value="PTHR23429"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02781">
        <property type="entry name" value="G6PD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00479">
        <property type="entry name" value="G6PD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000110">
        <property type="entry name" value="G6PD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00079">
        <property type="entry name" value="G6PDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00871">
        <property type="entry name" value="zwf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00069">
        <property type="entry name" value="G6P_DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="1 5" id="KW-0313">Glucose metabolism</keyword>
    <keyword evidence="2 5" id="KW-0521">NADP</keyword>
    <keyword evidence="3 5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="G6PD_N" evidence="7">
        <location>
            <begin position="24"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="domain" description="G6PD_C" evidence="8">
        <location>
            <begin position="209"/>
            <end position="508"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="5">
        <location>
            <position position="260"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="27"/>
            <end position="34"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="61"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="103"/>
            <end position="104"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="168"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="198"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <position position="202"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="236"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="255"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="360"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022526"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20904.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="512" mass="58577" checksum="611BF8F7F033060A" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2W7</accession>
    <name>A0A0M2V2W7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8">Nicotinate phosphoribosyltransferase</fullName>
            <ecNumber evidence="4 8">6.3.4.21</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BROFUL_00246</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>5-phospho-alpha-D-ribose 1-diphosphate + ATP + H2O + nicotinate = ADP + diphosphate + nicotinate beta-D-ribonucleotide + phosphate</text>
            <dbReference type="Rhea" id="RHEA:36163"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:32544"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57502"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.4.21"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Cofactor biosynthesis; NAD(+) biosynthesis; nicotinate D-ribonucleotide from nicotinate: step 1/1.</text>
    </comment>
    <comment type="PTM">
        <text evidence="8">Transiently phosphorylated on a His residue during the reaction cycle. Phosphorylation strongly increases the affinity for substrates and increases the rate of nicotinate D-ribonucleotide production. Dephosphorylation regenerates the low-affinity form of the enzyme, leading to product release.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the NAPRTase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.21" evidence="4 8"/>
    <dbReference type="EMBL" id="LAQJ01000030">
        <property type="protein sequence ID" value="KKO21029.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21029">
        <property type="protein sequence ID" value="KKO21029"/>
        <property type="gene ID" value="BROFUL_00246"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.304"/>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00457"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004516">
        <property type="term" value="F:nicotinate phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004514">
        <property type="term" value="F:nicotinate-nucleotide diphosphorylase (carboxylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041525">
        <property type="entry name" value="N/Namide_PRibTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041619">
        <property type="entry name" value="NAPRTase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040727">
        <property type="entry name" value="NAPRTase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007229">
        <property type="entry name" value="Nic_PRibTrfase-Fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006405">
        <property type="entry name" value="Nic_PRibTrfase_pncB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036068">
        <property type="entry name" value="Nicotinate_pribotase-like_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11098">
        <property type="entry name" value="PTHR11098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04095">
        <property type="entry name" value="NAPRTase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17956">
        <property type="entry name" value="NAPRTase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17767">
        <property type="entry name" value="NAPRTase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000484">
        <property type="entry name" value="NAPRT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51690">
        <property type="entry name" value="SSF51690"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01513">
        <property type="entry name" value="NAPRTase_put"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6 8" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7 8" id="KW-0662">Pyridine nucleotide biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 13" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NAPRTase_N" evidence="11">
        <location>
            <begin position="24"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="domain" description="NAPRTase" evidence="10">
        <location>
            <begin position="170"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="domain" description="NAPRTase_C" evidence="12">
        <location>
            <begin position="395"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="445"/>
            <end position="465"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="450"/>
            <end position="465"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004952"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU365100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF04095"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF17767"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF17956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO21029.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="465" mass="51384" checksum="9F2568514A8A201D" modified="2015-11-11" version="1">MCVTTRIMNGPKSLFLPEDSLGILTDLYQLTMAAGYFEQKMQGVATFELFVRHLPKNRSYLVAAGLEQALHYLTHIKFSAGTIGFLRQLPVFHQVSDDFFEYLRNFTFHGAVYAMPEGTIAFAEEPLVRVTAPIIETQIIETYLLATINFQTSIATKASRVVTAAQGREVIDFGTRRAHGMQAGVLAARASFIGGCKGTSNVFAACELGIPAVGTLAHSWILAFENEQDAFGKFYETFPDHTILLIDTYDTVAGARHAATIGRKLKGVRLDSGNLSELSRQVRRILDAEGLSDARIIASGDLNEDRIDDLLQQGAPIDSFGVGTEMVTSKDAPALGGVYKLVEQEQNGEIIPKMKFSEDKLTYPCKKQVYRIHDENDCFVKDIIGLEGEDVEGIPLLLPVITEGKISCHLPSIHEIQRTASDGLARLPEPYRRLKDAQPYPVMKSSGLEAKRSAVEERLRDRNIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2X3</accession>
    <name>A0A0M2V2X3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00235</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000029">
        <property type="protein sequence ID" value="KKO21034.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21034">
        <property type="protein sequence ID" value="KKO21034"/>
        <property type="gene ID" value="BROFUL_00235"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.288"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21034.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="58" mass="6453" checksum="791374409ACA188D" modified="2015-11-11" version="1">MKNVEFSVEGNMLNIKIDLSKEFGPSSSGKNIIVASTEGNVTIPNREEKIGLNVYRRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V3D8</accession>
    <name>A0A0M2V3D8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00086</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000009">
        <property type="protein sequence ID" value="KKO21179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21179">
        <property type="protein sequence ID" value="KKO21179"/>
        <property type="gene ID" value="BROFUL_00086"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="183" mass="20445" checksum="B88BF20CE47EA480" modified="2015-11-11" version="1">MLKMVLRNYSSKSTRPFAREVSHHKTPSGLSVSYLALLAAFLPLRTHLFPIYDRCDTKEEYLVGHVSRGMAYFEMSSIWQLRIRSGKLSLRDIVAITRFFQQNSTPFTPASGGQALFSIQREVKGGCLKSLNMHRGGISDNLTAPDFLQSIPRTVSTQSVPLLPIPFSGMSSQDFCGSLLRLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UP16</accession>
    <name>A0A0M2UP16_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03431</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000313">
        <property type="protein sequence ID" value="KKO17883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17883">
        <property type="protein sequence ID" value="KKO17883"/>
        <property type="gene ID" value="BROFUL_03431"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="158" mass="18706" checksum="368C483F903FD61B" modified="2015-11-11" version="1">MPTLQFKGKNICKDITRERIKRTIEKYDYDSGFQYLRVGQPLDAETLLEGKLPDYKIFARYAYYLCTGENLKDEKKISEKKFFVGDFGNQTIYLIYKQDYEALTRMALNLEIAERIIAEQPNKERIVYAPACFLDEEYMESNQIEFVSIPYNLFQRNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPJ8</accession>
    <name>A0A0M2UPJ8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03266</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000299">
        <property type="protein sequence ID" value="KKO18043.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18043">
        <property type="protein sequence ID" value="KKO18043"/>
        <property type="gene ID" value="BROFUL_03266"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013217">
        <property type="entry name" value="Methyltransf_12"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08242">
        <property type="entry name" value="Methyltransf_12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_12" evidence="1">
        <location>
            <begin position="33"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18043.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="206" mass="23451" checksum="63C90892095F4F62" modified="2015-11-11" version="1">MLVGPAHLWKMKRDFQIRFLKDMGLKPEYYLFEIGCGTLRGGIPLIDYLQDGHYFGDEVRATVLDEGQKELREARLEGKNPTFLLSPDISQLTVDRKFDYIWAFSVLIHMSDKILNDTLAFVSSHLSKEGAFYANVNIGERKEGHWQGFPLVARTFDFYSQACTTNGLVVSDIGPLKKFGHVSNVEPQDNQRMLRITKNGPTRCCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPT1</accession>
    <name>A0A0M2UPT1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">HEPN domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03200</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000293">
        <property type="protein sequence ID" value="KKO18098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18098">
        <property type="protein sequence ID" value="KKO18098"/>
        <property type="gene ID" value="BROFUL_03200"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007842">
        <property type="entry name" value="HEPN_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05168">
        <property type="entry name" value="HEPN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00748">
        <property type="entry name" value="HEPN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50910">
        <property type="entry name" value="HEPN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HEPN" evidence="1">
        <location>
            <begin position="1"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="111" mass="13242" checksum="E12026F37E36EA69" modified="2015-11-11" version="1">MYKTGRYIYVVYMAQQAIEKVVKALIEAEGKIIPFEHNLRRLLNITGSIRDFPDDWWTKIDFLSQYYLNARYKEDITILQNKITSEVAKEFLNFAKEVTEWCTLRIKSIEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPU2</accession>
    <name>A0A0M2UPU2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03210</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000293">
        <property type="protein sequence ID" value="KKO18108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18108">
        <property type="protein sequence ID" value="KKO18108"/>
        <property type="gene ID" value="BROFUL_03210"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3956"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="10"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="228" mass="26720" checksum="1254379C3BF1FC1F" modified="2015-11-11" version="1">MELAPIALFVYNRPWHLRQTVESLNKNELAEFSELFVFSDGPKSEADKEKVLAVRKYIKTISGFKSVNIVEREQNLGLGNSIITGVTEIINRYGRIIVLEDDMISSPYFLRFMNEALEFYEDEERVASIHGYIYPLKTLLPETFFLRGADCWGWATWKRGWNLFETDGSKLLYELKKNNLLRKFDLNGTYPYTRMLKDQAKGKNHSWAIRWHASLFLKEKLTLYPACR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ68</accession>
    <name>A0A0M2UQ68_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03305</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000301">
        <property type="protein sequence ID" value="KKO18027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18027">
        <property type="protein sequence ID" value="KKO18027"/>
        <property type="gene ID" value="BROFUL_03305"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012505">
        <property type="entry name" value="YbbR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07949">
        <property type="entry name" value="YbbR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="333" mass="37434" checksum="E8B6BF05A9E28B96" modified="2015-11-11" version="1">MKNIFTENLPTKLMALVMAFALWLYAINRHTGDLSATVSLTVSVPEGIAIVEQSTEEVTIHVQGPQNVIDTVDGMIKDHKIWAQYVIRESPDGIEDQLKQSIFIRREHLDLPPAVKLVSVYPDKIDVVLGKLQKKKLKVVLQKKGEPAVGYSVVNEFIFPGEVEVTGPLSALKEVSSINTVPVDISGISGEQNRTFPWRIEIDKRVAIRRGDKTVSLPVECKEDVRVWLQIVEQQDTRVLGKIKIKIISPAEYPYLIKLQDEFVEVKVKGPKLLLDKLNTDDVILYIDVTSLKPPGPYKQPIKSILPKNVEIADKLPEAHLDIRETQRSAEAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ86</accession>
    <name>A0A0M2UQ86_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_03058</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the MlaE permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000284">
        <property type="protein sequence ID" value="KKO18248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18248">
        <property type="protein sequence ID" value="KKO18248"/>
        <property type="gene ID" value="BROFUL_03058"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3776"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003453">
        <property type="entry name" value="ABC_MlaE_Proteobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030802">
        <property type="entry name" value="Permease_MalE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036513">
        <property type="entry name" value="STAS_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30188">
        <property type="entry name" value="PTHR30188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02405">
        <property type="entry name" value="MlaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52091">
        <property type="entry name" value="SSF52091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00056">
        <property type="entry name" value="TIGR00056"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="175"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="210"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="269"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="318"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="350"/>
            <end position="375"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU362044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="381" mass="40895" checksum="17714DE5C2CA9368" modified="2015-11-11" version="1">MSAKIQNKSEIKFSHPSQDTLVVHFAGDWLLETASPSTELFENEIKSVKTLRTVNYDTKNLTNWDSSLLLFLSKASDICVQRNIHIGMEGIPQGVRKLLDLASPKRQRKGITGKAGKKSFLVRVADTTLDFIRTSKEMSAFIGEAALAFGKLLCGKANFRRSDFMNVIQDSGAQALPIVTLISALVGLIFAFVGALQLKLFGAQIYVADIVGIAMVRVMGAIMTGIIMAGRTGASFAAQIGTMQVNEEVDALKTLGISPMEFLVLPRMLALALMMPLLCLYADLMGIIGGMVVGVFMLDLNFMEYFNQTKSAIALTHLWVGLFHSAVFGVLIALAGCLKGMQCGRSASAVGTATTSAVVTSIVSIIISTAIITIVCEVLGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR09</accession>
    <name>A0A0M2UR09_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UVR domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02793</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000264">
        <property type="protein sequence ID" value="KKO18523.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18523">
        <property type="protein sequence ID" value="KKO18523"/>
        <property type="gene ID" value="BROFUL_02793"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001943">
        <property type="entry name" value="UVR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036876">
        <property type="entry name" value="UVR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025542">
        <property type="entry name" value="YacH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38430">
        <property type="entry name" value="PTHR38430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02151">
        <property type="entry name" value="UVR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015034">
        <property type="entry name" value="YacH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46600">
        <property type="entry name" value="SSF46600"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50151">
        <property type="entry name" value="UVR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UVR" evidence="1">
        <location>
            <begin position="126"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18523.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="165" mass="18696" checksum="8A7DC1E75B2843C4" modified="2015-11-11" version="1">MKCESCNKKHATVHLTEIIGEMKKERHLCEDCAQGINKQIAKIPSPTEILTSLINQVAPEINEMSKIICPVCGLSYLEFRSHGRLGCPMDYTIFRKGLIPLLEKMHGSTQHVGKVPSRAGKELIKKNELMQLRSELNKAVEKEDYEKAAELRDRIYELSGDTNED</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR99</accession>
    <name>A0A0M2UR99_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03163</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000290">
        <property type="protein sequence ID" value="KKO18155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18155">
        <property type="protein sequence ID" value="KKO18155"/>
        <property type="gene ID" value="BROFUL_03163"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3903"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0110001">
        <property type="term" value="C:toxin-antitoxin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008201">
        <property type="entry name" value="HepT-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01934">
        <property type="entry name" value="DUF86"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-1277">Toxin-antitoxin system</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="91" mass="10780" checksum="6CBA330AA28684BB" modified="2015-11-11" version="1">MRDEIIKYLFDIKEASLAIFQFVHGKKFEDYEQDELLRSGVERKFEIIGEALNRIKNEDAAVLDKIRDYRNIVSFRNILAHGYDTVDDRIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URE7</accession>
    <name>A0A0M2URE7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02655</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000243">
        <property type="protein sequence ID" value="KKO18638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18638">
        <property type="protein sequence ID" value="KKO18638"/>
        <property type="gene ID" value="BROFUL_02655"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3293"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="464" mass="53240" checksum="937478C8F9DEF0A4" modified="2015-11-11" version="1">MKPSNRGFPSEFDWKLYPHAEDLLAGHIDKFLHNNNFARELASAIERDTSTRFPDWIDHMVLPEDVLSATAMKEAGFEEAGHPEAPPGMRVFIHRGAIFFPVLLTKKRFTEVALKPERLDHFIQVMGKGFSLQGSIYGPYRKAIVSAQGDHILSAVERRGYNGFCVSEKATEDTGEYRQALEGFFCRQRYYESLEDGMHAVQKLIEDTCKRLTPARATDAFFRAERAYWERRNWAGQIQKARQDRLGLGWGNHDHHTYRSSRENFTRLIKIFETLGFVCREQFFAGEEAGWGAQVLEHPECNIVLFTDIDLLKEERDKDFAREGLTQTSHRGTVGLWVELHGESILQSGLHHLAARFDFEKLSAGLKQSNVNTMPPFSYFEFLKQAFTDGETWRVDTKRLDDLLKKGSITGTQRETFHKTGAISSHLENIQRTQGFKGFNQHSVSAIITATDPRKYKVQETQRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URL0</accession>
    <name>A0A0M2URL0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">Flagellar basal body rod protein FlgB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">flgB</name>
        <name evidence="7" type="ORF">BROFUL_03002</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 5">Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">The basal body constitutes a major portion of the flagellar organelle and consists of a number of rings mounted on a central rod.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 5">Bacterial flagellum basal body</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the flagella basal body rod proteins family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18275">
        <property type="protein sequence ID" value="KKO18275"/>
        <property type="gene ID" value="BROFUL_03002"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3709"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030694">
        <property type="term" value="C:bacterial-type flagellum basal body, rod"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001444">
        <property type="entry name" value="Flag_bb_rod_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006300">
        <property type="entry name" value="FlgB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30435:SF12">
        <property type="entry name" value="PTHR30435:SF12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00460">
        <property type="entry name" value="Flg_bb_rod"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002889">
        <property type="entry name" value="Rod_FlgB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01396">
        <property type="entry name" value="FlgB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="7" id="KW-0966">Cell projection</keyword>
    <keyword evidence="7" id="KW-0969">Cilium</keyword>
    <keyword evidence="7" id="KW-0282">Flagellum</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flg_bb_rod" evidence="6">
        <location>
            <begin position="21"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00014376"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00024934"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR002889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="125" mass="14094" checksum="7A9C5568BFC7BD91" modified="2015-11-11" version="1">MITDVDKSISLLGKMLDVSAIKHKVIANNIANINTPGYKKMEVSFSDQLEKVLRDTSVDKFDTFQPKIVIAEKEKNETVRNDGNNVDVDKEISSLMKNTLSYNIYSQLLAKKMELVKSAIENSRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URL4</accession>
    <name>A0A0M2URL4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Yop protein translocation protein L</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">yscL</name>
        <name evidence="3" type="ORF">BROFUL_03007</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18280.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18280">
        <property type="protein sequence ID" value="KKO18280"/>
        <property type="gene ID" value="BROFUL_03007"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3715"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018035">
        <property type="entry name" value="Flagellar_FliH/T3SS_HrpE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02108">
        <property type="entry name" value="FliH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="FliH" evidence="2">
        <location>
            <begin position="87"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18280.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="227" mass="26127" checksum="695C5CCA94E1F62D" modified="2015-11-11" version="1">MKSKKVYISPAVKGVHILQSVEHQSNPSPKDYELKEDCEKEKEKDNEKMIAEFKAREDEAYRNGKLDAEKGFQRELEEIKNNNASLITMLHDAVKHFVERREKLWEECEPEIMNLVLAIAGKAVGYEIKNDSMNVTQQVMKDALTYAKEKKIIVIRLSCDDVKKMNESEEIKIAEQSIKFIEDKTISPGGCVIETDFGSIDSRIETRWEEIIKALSENKNDKTAHSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URM6</accession>
    <name>A0A0M2URM6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Protein-arginine kinase</fullName>
            <ecNumber evidence="5">2.7.14.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">mcsB</name>
        <name evidence="9" type="ORF">BROFUL_02792</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the specific phosphorylation of arginine residues in proteins.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>ATP + L-arginyl-[protein] = ADP + H(+) + N(omega)-phospho-L-arginyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:43384"/>
            <dbReference type="Rhea" id="RHEA-COMP:10532"/>
            <dbReference type="Rhea" id="RHEA-COMP:10533"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29965"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83226"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.14.1"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="5 6 7">Belongs to the ATP:guanido phosphotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.14.1" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000264">
        <property type="protein sequence ID" value="KKO18522.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18522">
        <property type="protein sequence ID" value="KKO18522"/>
        <property type="gene ID" value="BROFUL_02792"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3452"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004111">
        <property type="term" value="F:creatine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046314">
        <property type="term" value="P:phosphocreatine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd07930">
        <property type="entry name" value="bacterial_phosphagen_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00602">
        <property type="entry name" value="Prot_Arg_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023660">
        <property type="entry name" value="Arg_Kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000749">
        <property type="entry name" value="ATP-guanido_PTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022415">
        <property type="entry name" value="ATP-guanido_PTrfase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022414">
        <property type="entry name" value="ATP-guanido_PTrfase_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11547">
        <property type="entry name" value="PTHR11547"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00217">
        <property type="entry name" value="ATP-gua_Ptrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="SSF55931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00112">
        <property type="entry name" value="PHOSPHAGEN_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51510">
        <property type="entry name" value="PHOSPHAGEN_KINASE_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5 6" id="KW-0418">Kinase</keyword>
    <keyword evidence="2 5 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 5 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Phosphagen kinase C-terminal" evidence="8">
        <location>
            <begin position="23"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <begin position="26"/>
            <end position="30"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <position position="89"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <position position="123"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <begin position="174"/>
            <end position="178"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <begin position="205"/>
            <end position="210"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00602"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51510"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18522.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="350" mass="39953" checksum="68A07647BC991965" modified="2015-11-11" version="1">MKISDLADNTGEWLRGTGAESDIVISSRIRLARNVARFPFLSRANIKQKRELEEIVRDKIKEAEITADLRYINLADIDPVDRLFLVERHLISREHAGGEGERGVAFGKSETISLMVNEEDHLRIQVIRSGFELKEAWKTIDEVDNKLEKRLSYAYSSRFGYLTACPTNVGTGMRASVMMHLPALGMTHHIEKVFNAVMKLGLVVRGLYGEGTQVSGDLYQISNQFTLGKSEIEIIEIIEGVIPRITSYERMARKALISENREQLEDRIWRSYGMLKVARIISSEEIMHLLSQVRMGVNLGIINDIEMKTLNELFILTLPGHLQKLEGRELTSQQRNIIRAAYVRKRLEMI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URQ1</accession>
    <name>A0A0M2URQ1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02977</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000281">
        <property type="protein sequence ID" value="KKO18320.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18320">
        <property type="protein sequence ID" value="KKO18320"/>
        <property type="gene ID" value="BROFUL_02977"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18320.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="49" mass="5727" checksum="9E4F48864F5004C6" modified="2015-11-11" version="1">MLGTGIHKFLDYAIELKESQPNMFYELISDYELSFQIRNIRSGGEEKQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US01</accession>
    <name>A0A0M2US01_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">SIS domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02674</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SIS family. PHI subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000246">
        <property type="protein sequence ID" value="KKO18617.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18617">
        <property type="protein sequence ID" value="KKO18617"/>
        <property type="gene ID" value="BROFUL_02674"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901135">
        <property type="term" value="P:carbohydrate derivative metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05005">
        <property type="entry name" value="SIS_PHI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017552">
        <property type="entry name" value="PHI/rmpB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001347">
        <property type="entry name" value="SIS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43443">
        <property type="entry name" value="PTHR43443"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01380">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03127">
        <property type="entry name" value="RuMP_HxlB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51464">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SIS" evidence="2">
        <location>
            <begin position="36"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18617.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="192" mass="20881" checksum="641AD3E2BB23886D" modified="2015-11-11" version="1">MKIEADSTGIKAITRIILDEIHSVLEKIDEHDYEEFLSSLLSANNIFVTGQGRSGLVSRTFAMRLTHIGLNAYCVGDATTPNIDQGDLLIACSSSGSTHITRYIAGLAKKAHAIVAAVTSQKNSPLAGQADIVVELPVKEVSTNHKDCGSIQFRSTLFEQACLVYLDGIILSLVKKLKSSENEMHKRHSNLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UST0</accession>
    <name>A0A0M2UST0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02194</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000218">
        <property type="protein sequence ID" value="KKO19098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19098">
        <property type="protein sequence ID" value="KKO19098"/>
        <property type="gene ID" value="BROFUL_02194"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013406">
        <property type="entry name" value="CHP02574_addiction_mod"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09720">
        <property type="entry name" value="Unstab_antitox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02574">
        <property type="entry name" value="stabl_TIGR02574"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="74" mass="8350" checksum="5D4664D67F87F4D9" modified="2015-11-11" version="1">MKTKDLIAEAISLPVKEMAMVIDSLLKSLNSPEAEIDKKWASVAKRRLEELHSGKVKAVPGEEVFKRILNRFSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USZ3</accession>
    <name>A0A0M2USZ3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02567</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000238">
        <property type="protein sequence ID" value="KKO18735.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18735">
        <property type="protein sequence ID" value="KKO18735"/>
        <property type="gene ID" value="BROFUL_02567"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3187"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037522">
        <property type="entry name" value="HD_GYP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51832">
        <property type="entry name" value="HD_GYP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="2"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="3">
        <location>
            <begin position="169"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="domain" description="HD-GYP" evidence="4">
        <location>
            <begin position="331"/>
            <end position="527"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18735.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="542" mass="61954" checksum="2333C94831FCF30F" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT12</accession>
    <name>A0A0M2UT12_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putative cytochrome c</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02535</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18755.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18755">
        <property type="protein sequence ID" value="KKO18755"/>
        <property type="gene ID" value="BROFUL_02535"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00034">
        <property type="entry name" value="Cytochrom_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13442">
        <property type="entry name" value="Cytochrome_CBB3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0349">Heme</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644007" evidence="5">
        <location>
            <begin position="30"/>
            <end position="493"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="6">
        <location>
            <begin position="146"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="6">
        <location>
            <begin position="302"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="6">
        <location>
            <begin position="405"/>
            <end position="487"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18755.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="493" mass="55794" checksum="4A8E469686194B93" modified="2015-11-11" version="1">MRLRSIVNLQKRWLTLILVCLPFAACLHASFGQERKIDSMFLELDKKYRMPEQWSALPFELEDPYKRVKNGPPLVNVIYKANVEWLSRWIANPKTVVQNAKMPNLGLDFDEIKAVIVFLGSIAEKDVPQVAWDEFLLKKEDALSEDEYDKMEKVFNAGKGVWGRARCTICHPIKGVGGNVGVGPDLGEITTKINRNWLHAWLGNTKSHFPDTMMAQYRFTDQDVRWLVEFIMRDTQFIPEEKDEEEGTAQPKVETPVLTEKEFSGLRNDAALIEKGRSVVEKARCFVCHDIKGISELMPVIERKREGLSGFEKLLYEIRCLACHRIQEKGGTYAPNLTFAGSKIKMNWEGEFLQAPDIIRPLSQQMPKFNLTEDEAKAATEYIEKSLLTKEPLPDPFKDGPPTAEIIAAGEKLFYEKGCNTCHAENITKGGGVVGPNLATVGDRLQPAYILHHLKNPQQVNPQGVEPNFGLSDEELKQLVGFLVDHVKKKEGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT15</accession>
    <name>A0A0M2UT15_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">3-oxoacyl-(Acyl-carrier-protein) synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02286</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO18992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18992">
        <property type="protein sequence ID" value="KKO18992"/>
        <property type="gene ID" value="BROFUL_02286"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2849"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004315">
        <property type="term" value="F:3-oxoacyl-[acyl-carrier-protein] synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00834">
        <property type="entry name" value="KAS_I_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000794">
        <property type="entry name" value="Beta-ketoacyl_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018201">
        <property type="entry name" value="Ketoacyl_synth_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014031">
        <property type="entry name" value="Ketoacyl_synth_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014030">
        <property type="entry name" value="Ketoacyl_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020841">
        <property type="entry name" value="PKS_Beta-ketoAc_synthase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11712">
        <property type="entry name" value="PTHR11712"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00109">
        <property type="entry name" value="ketoacyl-synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02801">
        <property type="entry name" value="Ketoacyl-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00825">
        <property type="entry name" value="PKS_KS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00606">
        <property type="entry name" value="B_KETOACYL_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PKS_KS" evidence="3">
        <location>
            <begin position="8"/>
            <end position="396"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="396" mass="42967" checksum="9B2FCEF186D21CA8" modified="2015-11-11" version="1">MKSLKDTVVVTGIGVITPLKPFREVDEFWNSLCSGEDAIKRMSLPLLDMDRKWLMAGIDQSRFPNSISPENKLQWIAEEALCMAMKDANLEEYGNAGLSLGTVLGNVLAKEKRLLENKKQQSKWDNEEESLSHITAYLAAQHNLSGPTITISTACTSGTDAIGIAARKIMTGKTSMMFAGGVDVLSDFAILGFHVLQALTEEKVRPFDKNRSGLALGEGAAFVVLESEKHAIHRQAKIYGKVMGYASRADANHLAGPHREGRGLADAINRAISEYALEPQEIDYINAHGTGTVYNDLMETKAIKKVFGKAAYDIPISSTKSMLGHSFGASGAIEAICCLLSMKNKVVPPTINFHEKDPECDLDYVPNVSRYHDVNTAISLSAGFGGQNAAILFGQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT20</accession>
    <name>A0A0M2UT20_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Pantoate--beta-alanine ligase (AMP-forming)</fullName>
            <ecNumber evidence="4">6.3.2.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">panC</name>
        <name evidence="6" type="ORF">BROFUL_02081</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(R)-pantoate + ATP + beta-alanine = (R)-pantothenate + AMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10912"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15980"/>
            <dbReference type="ChEBI" id="CHEBI:29032"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57966"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.2.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cofactor biosynthesis; (R)-pantothenate biosynthesis; (R)-pantothenate from (R)-pantoate and beta-alanine: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the pantothenate synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.1" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000209">
        <property type="protein sequence ID" value="KKO19203.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19203">
        <property type="protein sequence ID" value="KKO19203"/>
        <property type="gene ID" value="BROFUL_02081"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2597"/>
    <dbReference type="UniPathway" id="UPA00028">
        <property type="reaction ID" value="UER00005"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004592">
        <property type="term" value="F:pantoate-beta-alanine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015940">
        <property type="term" value="P:pantothenate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003721">
        <property type="entry name" value="Pantoate_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042176">
        <property type="entry name" value="Pantoate_ligase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21299:SF1">
        <property type="entry name" value="PTHR21299:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02569">
        <property type="entry name" value="Pantoate_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00018">
        <property type="entry name" value="panC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-0566">Pantothenate biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004990"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009256"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012219"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022655"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19203.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="238" mass="26035" checksum="5DB01E8FBCE3D64C" modified="2015-11-11" version="1">MSVFVNPLQFGKNEDFARYPRTLDNDCNLLSQEGVSIVFSPGAAEMYPAGFCTAVVPESLEDKLCGKSRPGHFRGVAVVVLKLFNLIQPDVAYFGQKDFQQTVVIKRIVSDLSVGVAIKVLPTIRDQNGLALSSRNAYLSETERNDAFCLYTALTKAKAMVNTGMTDTEKILREMEEIITRCKSATIDYIAIVNPETLGAVPKARNGDVVALAVRIGKTRLIDNVILILMIALCCLGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT33</accession>
    <name>A0A0M2UT33_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03190</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18141">
        <property type="protein sequence ID" value="KKO18141"/>
        <property type="gene ID" value="BROFUL_03190"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="54" mass="6365" checksum="A77F633DE7E1BB9E" modified="2015-11-11" version="1">MYIVNLSLASKDTTRSRVINDTFYNLFNDNSEFPYSTNISRSVKPNYYYILPFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTA0</accession>
    <name>A0A0M2UTA0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03109</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000286">
        <property type="protein sequence ID" value="KKO18211.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18211">
        <property type="protein sequence ID" value="KKO18211"/>
        <property type="gene ID" value="BROFUL_03109"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18211.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="144" mass="16099" checksum="F0ED5514D49C10B8" modified="2015-11-11" version="1">MFWDASAIIPLCIDGLQTKVVKGILKKDSSMAVWWGSVVECHSAFARLRRDNALKHPEEDRVRDILAILANAWTEVEPSGDIRDIASRLLLTHPLRAADSLQLAAALVWANKIPKGNYLVCLDHRLRDAARKEGFILMPSAFPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTB1</accession>
    <name>A0A0M2UTB1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01958</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19298">
        <property type="protein sequence ID" value="KKO19298"/>
        <property type="gene ID" value="BROFUL_01958"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2439"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="5"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="5">
        <location>
            <begin position="131"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="3">
        <location>
            <begin position="131"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="227" mass="25776" checksum="F6C162E02B428DB7" modified="2015-11-11" version="1">MSKEKILIVDDEQDLLKLIRYHLEKDGYKVLCAYNGEDALFLTRKERPELVLLDLMLPRIDGLEVCKKIKADQELAHTAIVMLTAKGDESDITMGLKLGADDYITKPFSPKELVARVQAVLRRTKNASAAQEYITMGDLTIDLYKHEVTVKNEPIQLTLTEFKLLHQLASKPGRVFARDQLLDAISGSETFVIDRTIDVHIASLRKKLKSYANRITTIRGIGYKFKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTC7</accession>
    <name>A0A0M2UTC7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FG-GAP repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02206</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000220">
        <property type="protein sequence ID" value="KKO19092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19092">
        <property type="protein sequence ID" value="KKO19092"/>
        <property type="gene ID" value="BROFUL_02206"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013517">
        <property type="entry name" value="FG-GAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028994">
        <property type="entry name" value="Integrin_alpha_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13517">
        <property type="entry name" value="FG-GAP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69318">
        <property type="entry name" value="SSF69318"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="602" mass="68653" checksum="6C46392B22687A2D" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTK5</accession>
    <name>A0A0M2UTK5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 7">Transcriptional regulator MraZ</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">mraZ</name>
        <name evidence="10" type="ORF">BROFUL_02338</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="7">Forms oligomers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
            <location evidence="7">Nucleoid</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the MraZ family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18945">
        <property type="protein sequence ID" value="KKO18945"/>
        <property type="gene ID" value="BROFUL_02338"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009295">
        <property type="term" value="C:nucleoid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16321">
        <property type="entry name" value="MraZ_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1550.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01008">
        <property type="entry name" value="MraZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003444">
        <property type="entry name" value="MraZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035644">
        <property type="entry name" value="MraZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020603">
        <property type="entry name" value="MraZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038619">
        <property type="entry name" value="MraZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007159">
        <property type="entry name" value="SpoVT-AbrB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037914">
        <property type="entry name" value="SpoVT-AbrB_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34701">
        <property type="entry name" value="PTHR34701"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02381">
        <property type="entry name" value="MraZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89447">
        <property type="entry name" value="SSF89447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51740">
        <property type="entry name" value="SPOVT_ABRB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 7 8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="6 7" id="KW-0804">Transcription</keyword>
    <keyword evidence="4 7" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="SpoVT-AbrB" evidence="9">
        <location>
            <begin position="36"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00013860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51740"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO18945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="99" mass="11558" checksum="B62342EF51902565" modified="2015-11-11" version="1">MFTPSSWQSVVSKIEQHSFADMKARQFQRLFFSAAQKIPECDPQGRILIPQILKDYAKIKKNVVIAGLNRRIEIWNEKSWNDFTSEYGKAYEEIAEGLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTK7</accession>
    <name>A0A0M2UTK7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative heme protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01865</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000194">
        <property type="protein sequence ID" value="KKO19403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19403">
        <property type="protein sequence ID" value="KKO19403"/>
        <property type="gene ID" value="BROFUL_01865"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023155">
        <property type="entry name" value="Cyt_c-552/4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036280">
        <property type="entry name" value="Multihaem_cyt_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13435">
        <property type="entry name" value="Cytochrome_C554"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48695">
        <property type="entry name" value="SSF48695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005643999" evidence="1">
        <location>
            <begin position="26"/>
            <end position="477"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome_C554" evidence="2">
        <location>
            <begin position="67"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="477" mass="52113" checksum="D5376E6388090026" modified="2015-11-11" version="1">MRLNVKFTLSFLAGLFLVTLNVAYASDPREWSPTRKLPETKRPNNILDLPITIPGDVRASQFFSPISCGACHPEIYKMWSGSTHANAWRNPLFQALYQLGKKTAVGESEKKNIESCVRCHVPIGHSSGDENLPSPDDEKGGVICDFCHSVKATSGIGNAPYILSPGNAAAMEGGTKYGPFDDCPETIHQSKFSELHTRSEFCGGCHDVSHAGNAILIEQTYTEWEQSPYNTGDPKTSVHCQDCHMRQRPGFPSTGSTERPDNPGFASPEIMGGKKRPHIWTHYFVGGSTNPVSLPSGADINKQLATDRLKNAATLELSLAPGYKKGDVLNFDVIIKNTGAGHYLPTGLTELRQMWLSVSITDAEGKQLYQSGKVNEKGVIDPNTSVYHTVFGDKDGKPTLHVWSATQILSDNRVPPKGQKTESFTCLIPQDAKSPLRLTAVLNYRSAPQEVVDALLGDKSVKFPIVDMAEISKEISL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTS2</accession>
    <name>A0A0M2UTS2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Universal stress protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02090</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the universal stress protein A family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000209">
        <property type="protein sequence ID" value="KKO19212.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19212">
        <property type="protein sequence ID" value="KKO19212"/>
        <property type="gene ID" value="BROFUL_02090"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006015">
        <property type="entry name" value="Universal_stress_UspA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006016">
        <property type="entry name" value="UspA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00582">
        <property type="entry name" value="Usp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006276">
        <property type="entry name" value="UspA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01438">
        <property type="entry name" value="UNVRSLSTRESS"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Usp" evidence="3">
        <location>
            <begin position="5"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008791"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR006276"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19212.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="153" mass="17355" checksum="DBF0A508C48CB10D" modified="2015-11-11" version="1">MICIKNILCPIDYSVYSEMALKYAIEFAEKYQAKLCLIHVLDIRVYDINNPDLYDVNIVDEETIAKLRERLLRCVTDDTRGKIAVEARIIQGVPFAEIIRAAKEYKADMIVIGTHGRTGISHAIMGSVAEKVVRKAPCPVLTIRHPEHDFIMP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTX8</accession>
    <name>A0A0M2UTX8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycolate oxidase subunit GlcD</fullName>
            <ecNumber evidence="2">1.1.3.15</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">glcD</name>
        <name evidence="2" type="ORF">BROFUL_03385</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.3.15" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17934">
        <property type="protein sequence ID" value="KKO17934"/>
        <property type="gene ID" value="BROFUL_03385"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003973">
        <property type="term" value="F:(S)-2-hydroxy-acid oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006094">
        <property type="entry name" value="Oxid_FAD_bind_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01565">
        <property type="entry name" value="FAD_binding_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="1">
        <location>
            <begin position="44"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO17934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="111" mass="11906" checksum="A5E5A44E4DF08ECF" modified="2015-11-11" version="1">MDTVAGKKLTTDGLSRELSRLVGKKNVLSALEDRICYSCDGSKQRYVPDIVVRPQSAQDVSATVQFAHENDMPVYPRGAGSGLTGGAVPVKGGIVLDFTQMNHIVEISLKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTY1</accession>
    <name>A0A0M2UTY1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase</fullName>
            <ecNumber evidence="3">2.7.7.60</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">4-diphosphocytidyl-2C-methyl-D-erythritol synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">MEP cytidylyltransferase</fullName>
            <shortName evidence="3">MCT</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">ispD</name>
        <name evidence="4" type="ORF">BROFUL_02028</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>2-C-methyl-D-erythritol 4-phosphate + CTP + H(+) = 4-CDP-2-C-methyl-D-erythritol + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:13429"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <dbReference type="ChEBI" id="CHEBI:57823"/>
            <dbReference type="ChEBI" id="CHEBI:58262"/>
            <dbReference type="EC" id="2.7.7.60"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 2/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.60" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000206">
        <property type="protein sequence ID" value="KKO19272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19272">
        <property type="protein sequence ID" value="KKO19272"/>
        <property type="gene ID" value="BROFUL_02028"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2529"/>
    <dbReference type="UniPathway" id="UPA00056">
        <property type="reaction ID" value="UER00093"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050518">
        <property type="term" value="F:2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019288">
        <property type="term" value="P:isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02516">
        <property type="entry name" value="CDP-ME_synthetase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00108">
        <property type="entry name" value="IspD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001228">
        <property type="entry name" value="IspD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034683">
        <property type="entry name" value="IspD/TarI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01128">
        <property type="entry name" value="IspD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00453">
        <property type="entry name" value="ispD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="2 3 4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3 4" id="KW-0808">Transferase</keyword>
    <feature type="site" description="Transition state stabilizer" evidence="3">
        <location>
            <position position="15"/>
        </location>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="3">
        <location>
            <position position="22"/>
        </location>
    </feature>
    <feature type="site" description="Positions MEP for the nucleophilic attack" evidence="3">
        <location>
            <position position="155"/>
        </location>
    </feature>
    <feature type="site" description="Positions MEP for the nucleophilic attack" evidence="3">
        <location>
            <position position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="228" mass="25413" checksum="8E8A0B8251F2D670" modified="2015-11-11" version="1">MNVSVVLVGAGLGLRMGGSVKKPFLQIRGKPIFLYTIERFSQIETVGEIILVVGQTEIPSLRDQWQNTLIAHKVKKIVPGGKRRQDSVYNGLCQTETDAEVVLIHDIVRPLVRKEHIETVISKAKESHAAILAAPMKATVKEASGNLCIRQTIPRNNLWMAQTPQGFNRELILKVFGQFKTEEREFTDDAEMVEKAGYRVEIVPGTDDNIKITTPEDIRIAEALLTNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTZ4</accession>
    <name>A0A0M2UTZ4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">CRISPR-associated protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02001</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000202">
        <property type="protein sequence ID" value="KKO19287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19287">
        <property type="protein sequence ID" value="KKO19287"/>
        <property type="gene ID" value="BROFUL_02001"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043571">
        <property type="term" value="P:maintenance of CRISPR repeat elements"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006482">
        <property type="entry name" value="Cas7_Csh2/Csh2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05107">
        <property type="entry name" value="Cas_Cas7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="237"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="200"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="200"/>
            <end position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="261" mass="29455" checksum="D939F217584ECCFA" modified="2015-11-11" version="1">MSNELHHNIVTLPNGKVASGVVTERHDMVLLFDAKKANPNGDPDAENMPRIQPNTLKGMVTDVCLKRKIRNFFSLYKTDGNLKDNPESGYDIFIKENAILQQLMEAAPINASAKRIFIDIYKQNETAFKKGNEFWDISHRDALCQTYFDLRAFGGVISTEGPLKGSFYGQVRGPIQFSFAESLDKVLQLDATITRCCSTSEKEKKEQEKQSEGDEKTGGNRTMGENIILTMDSIERISIFLLPSLQKPALLILIWIIFFLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU18</accession>
    <name>A0A0M2UU18_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Peptidase M15</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01729</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000180">
        <property type="protein sequence ID" value="KKO19558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19558">
        <property type="protein sequence ID" value="KKO19558"/>
        <property type="gene ID" value="BROFUL_01729"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1380.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019262">
        <property type="entry name" value="DUF2272"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009045">
        <property type="entry name" value="Hedgehog_sig/DD-Pept_Zn-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013230">
        <property type="entry name" value="Peptidase_M15A_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10030">
        <property type="entry name" value="DUF2272"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08291">
        <property type="entry name" value="Peptidase_M15_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55166">
        <property type="entry name" value="SSF55166"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_M15_3" evidence="3">
        <location>
            <begin position="1029"/>
            <end position="1132"/>
        </location>
    </feature>
    <feature type="domain" description="DUF2272" evidence="4">
        <location>
            <begin position="1479"/>
            <end position="1593"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="952"/>
            <end position="995"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="1368"/>
            <end position="1395"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="952"/>
            <end position="966"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF10030"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1640" mass="180607" checksum="AC5B3CA957496D47" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU55</accession>
    <name>A0A0M2UU55_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Phosphatidylglycerol-prolipoprotein diacylglyceryl transferase</fullName>
            <ecNumber evidence="3">2.4.-.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">lgt</name>
        <name evidence="3" type="ORF">BROFUL_03292</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Lgt family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.-.-" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000301">
        <property type="protein sequence ID" value="KKO18014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18014">
        <property type="protein sequence ID" value="KKO18014"/>
        <property type="gene ID" value="BROFUL_03292"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008961">
        <property type="term" value="F:phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042158">
        <property type="term" value="P:lipoprotein biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001640">
        <property type="entry name" value="Lgt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30589">
        <property type="entry name" value="PTHR30589"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01790">
        <property type="entry name" value="LGT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="3" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="51"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="92"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="140" mass="16124" checksum="6CA0A367F641E633" modified="2015-11-11" version="1">MRKVLLEIPLPFFHKGIPIYAYGFMLMVAFLVAITIARWRAKKEGLDPNKITDLGIYLVCAGILGARLFFIIQFYKEYQHHLLSIFKIYEGGLVYYGGLFAGIVTLFVYVRKNHLPSLRLLISLYLQPHWDLPLAVSDAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUC6</accession>
    <name>A0A0M2UUC6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative transporter protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03232</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000295">
        <property type="protein sequence ID" value="KKO18084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18084">
        <property type="protein sequence ID" value="KKO18084"/>
        <property type="gene ID" value="BROFUL_03232"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3980"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032317">
        <property type="entry name" value="HlyD_D23"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006143">
        <property type="entry name" value="RND_pump_MFP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16576">
        <property type="entry name" value="HlyD_D23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01730">
        <property type="entry name" value="RND_mfp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644012" evidence="2">
        <location>
            <begin position="21"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="domain" description="HlyD_D23" evidence="3">
        <location>
            <begin position="51"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="387" mass="42933" checksum="BC6CFAF6F34EC507" modified="2015-11-11" version="1">MNPFLIIRCSFILGIITLAAACSPGAKEKHAMPAAIPVVVAIAEQKDIPIQIHTIGNVEAYSTVSVKARVEGELLRVYFKEGQEVKKGDLLFLIDSRPFKASLKQFEANLARDTAQMKKAEADVLRYNALLKSGVVSKQEYDQYHTNFEAFRATVKADEAAVVNARLQLGYCNIRSPIDGRIGRLEVNQGNIVKDIDTILVTINQTKPIYVTFSLPEQELSEVRRYMAQKNLKVEAIVPKDEMDSVAGELTFINNEVHESTGTILLKAIFVNEDESLWPKQFVNVVLTLTTQPGAVVIPSQAIQIGQEGNYVFVVRPDFTVEFRPVVLGNRFNQETIIAKGLQPGEKVVTDGQFQLVQGSKVEIKNILESLAQSSSGIHNQKVDTYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUC7</accession>
    <name>A0A0M2UUC7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01852</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000191">
        <property type="protein sequence ID" value="KKO19437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19437">
        <property type="protein sequence ID" value="KKO19437"/>
        <property type="gene ID" value="BROFUL_01852"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045781">
        <property type="entry name" value="SxtJ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19588">
        <property type="entry name" value="SxtJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="19"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="42"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="70"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="138" mass="16143" checksum="751B91BD8A4DAD16" modified="2015-11-11" version="1">MIVEELKNIKSSKKELRKFGITMGAVLVVIGGLLWWRGKDYYSCLFIPSAVLFFLGLIIPFLLKPVHKMWMGLAVLMSWFMTRVILSILFYLGLTPMGFVARLFGKDFLRLKFDKQATDSYWILKEKGKDRDTYEKQF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUE5</accession>
    <name>A0A0M2UUE5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transposase IS66 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02030</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19230">
        <property type="protein sequence ID" value="KKO19230"/>
        <property type="gene ID" value="BROFUL_02030"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004291">
        <property type="entry name" value="Transposase_IS66_central"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03050">
        <property type="entry name" value="DDE_Tnp_IS66"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DDE_Tnp_IS66" evidence="2">
        <location>
            <begin position="4"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="31"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="104" mass="11875" checksum="66DC0A7BA5945E49" modified="2015-11-11" version="1" fragment="single">QDKDAQRLTKRLNRHKQELFTFLEHEDVSPYNNHAEQQMRKPVLTRKVSQQNRSEDGAKTQAILMSLLRSAELQRINPVENLLASAKNALMVKTPSGFACKIAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUF2</accession>
    <name>A0A0M2UUF2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Molybdopterin molybdenumtransferase</fullName>
            <ecNumber evidence="7">2.10.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_02691</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 7">Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>adenylyl-molybdopterin + H(+) + molybdate = AMP + H2O + Mo-molybdopterin</text>
            <dbReference type="Rhea" id="RHEA:35047"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:36264"/>
            <dbReference type="ChEBI" id="CHEBI:62727"/>
            <dbReference type="ChEBI" id="CHEBI:71302"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.10.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 7">Cofactor biosynthesis; molybdopterin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 7">Belongs to the MoeA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.10.1.1" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000248">
        <property type="protein sequence ID" value="KKO18606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18606">
        <property type="protein sequence ID" value="KKO18606"/>
        <property type="gene ID" value="BROFUL_02691"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3328"/>
    <dbReference type="UniPathway" id="UPA00344"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061599">
        <property type="term" value="F:molybdopterin molybdotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032324">
        <property type="term" value="P:molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00887">
        <property type="entry name" value="MoeA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.340.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.980.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036425">
        <property type="entry name" value="MoaB/Mog-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001453">
        <property type="entry name" value="MoaB/Mog_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038987">
        <property type="entry name" value="MoeA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005111">
        <property type="entry name" value="MoeA_C_domain_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036688">
        <property type="entry name" value="MoeA_C_domain_IV_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005110">
        <property type="entry name" value="MoeA_linker/N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036135">
        <property type="entry name" value="MoeA_linker/N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10192">
        <property type="entry name" value="PTHR10192"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00994">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03454">
        <property type="entry name" value="MoeA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03453">
        <property type="entry name" value="MoeA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00852">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53218">
        <property type="entry name" value="SSF53218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63867">
        <property type="entry name" value="SSF63867"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63882">
        <property type="entry name" value="SSF63882"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00177">
        <property type="entry name" value="molyb_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 7" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="6 7" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="MoCF_biosynth" evidence="8">
        <location>
            <begin position="177"/>
            <end position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU365090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="399" mass="43836" checksum="0E7F1E583248C0F6" modified="2015-11-11" version="1">MISVDTAIKIVEDTIKPLPVKTIPFENALGFCLAEDMQSDIDMPPFNRSAMDGYAVIAEDTANAPVELTVIEDIAAGHMPTKKVSHGQASKIMTGAAVPAGADAVVKFEETEDLSVSNRVKILRPIDKGRNISSRGEDMQVGQKVLCKGMPVRSQEIGILATIGKSQVKVFSAPTVGIISTGDELVDVGLKPSVAQIRNSNGYSLAAQARRMHAEVDLLGIVKDTKEEISSMMQWGFRKDILILSGGVSMGEYDLVGDVMKDFNTRIYFEKVALRPGKPVIFGKKDTTFIFALPGNPVASFVTFELFVYPAIRKMMGFTHVHRTTLQASLETEILVKRKRREYRPAFLRMHNNTWMVSPVEWHGSADLLATTMANSLLIVREDAERLVTGQLVDVIPLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUJ0</accession>
    <name>A0A0M2UUJ0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">LptD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03188</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18139.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18139">
        <property type="protein sequence ID" value="KKO18139"/>
        <property type="gene ID" value="BROFUL_03188"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019867">
        <property type="term" value="C:outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061024">
        <property type="term" value="P:membrane organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010033">
        <property type="term" value="P:response to organic substance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007543">
        <property type="entry name" value="LptD_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04453">
        <property type="entry name" value="LptD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LptD" evidence="1">
        <location>
            <begin position="477"/>
            <end position="717"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04453"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18139.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="932" mass="108872" checksum="D863886A384A76A8" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUJ1</accession>
    <name>A0A0M2UUJ1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Phosphatidylglycerol lysyltransferase</fullName>
            <ecNumber evidence="5">2.3.2.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">Lysylphosphatidylglycerol synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="primary">mprF</name>
        <name evidence="14" type="ORF">BROFUL_02011</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycerol) + L-lysyl-tRNA(Lys) = 1,2-diacyl-sn-glycero-3-phospho-1'-(3'-O-L-lysyl)-sn-glycerol + tRNA(Lys)</text>
            <dbReference type="Rhea" id="RHEA:10668"/>
            <dbReference type="Rhea" id="RHEA-COMP:9696"/>
            <dbReference type="Rhea" id="RHEA-COMP:9697"/>
            <dbReference type="ChEBI" id="CHEBI:64716"/>
            <dbReference type="ChEBI" id="CHEBI:75792"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78529"/>
            <dbReference type="EC" id="2.3.2.3"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the LPG synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.3" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000203">
        <property type="protein sequence ID" value="KKO19280.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19280">
        <property type="protein sequence ID" value="KKO19280"/>
        <property type="gene ID" value="BROFUL_02011"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2504"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050071">
        <property type="term" value="F:lysyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022791">
        <property type="entry name" value="L-PG_synthase/AglD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024320">
        <property type="entry name" value="LPG_synthase_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09924">
        <property type="entry name" value="LPG_synthase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03706">
        <property type="entry name" value="LPG_synthase_TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="14" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="14" id="KW-0808">Transferase</keyword>
    <keyword evidence="8 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="45"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="123"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="164"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="202"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="229"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="284"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="323"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="366"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="392"/>
            <end position="412"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="447"/>
            <end position="471"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="491"/>
            <end position="510"/>
        </location>
    </feature>
    <feature type="domain" description="LPG_synthase_C" evidence="13">
        <location>
            <begin position="534"/>
            <end position="822"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000367"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008627"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00021546"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00031899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF09924"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KKO19280.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="850" mass="95421" checksum="8C854C80F6E29F60" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUL7</accession>
    <name>A0A0M2UUL7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sigma-54 modulation protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01975</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19315.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19315">
        <property type="protein sequence ID" value="KKO19315"/>
        <property type="gene ID" value="BROFUL_01975"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044238">
        <property type="term" value="P:primary metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006417">
        <property type="term" value="P:regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00552">
        <property type="entry name" value="RaiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036567">
        <property type="entry name" value="RHF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003489">
        <property type="entry name" value="RHF/RaiA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02482">
        <property type="entry name" value="Ribosomal_S30AE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69754">
        <property type="entry name" value="SSF69754"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00741">
        <property type="entry name" value="yfiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0810">Translation regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19315.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="119" mass="13684" checksum="4CD768297F4BB127" modified="2015-11-11" version="1">MENITIVARHLDITEAIKNYALLKAKKIKKFFEWILQIQITLDIGGDNSHIVEMIVSISRGPTLVAEVSNPDMYRAIDRVVDKIEAQLKKHKGKIQSRIVRRKKPETKQMEDFEGEPEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUN1</accession>
    <name>A0A0M2UUN1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glutamate formimidoyltransferase</fullName>
            <ecNumber evidence="2">2.1.2.5</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">ftcD</name>
        <name evidence="2" type="ORF">BROFUL_01549</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.5" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000160">
        <property type="protein sequence ID" value="KKO19748.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19748">
        <property type="protein sequence ID" value="KKO19748"/>
        <property type="gene ID" value="BROFUL_01549"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005542">
        <property type="term" value="F:folic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030409">
        <property type="term" value="F:glutamate formimidoyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.670">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013802">
        <property type="entry name" value="Formiminotransferase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037070">
        <property type="entry name" value="Formiminotransferase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022384">
        <property type="entry name" value="FormiminoTrfase_cat_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02971">
        <property type="entry name" value="FTCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55116">
        <property type="entry name" value="SSF55116"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="FTCD" evidence="1">
        <location>
            <begin position="11"/>
            <end position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19748.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="85" mass="9037" checksum="FFDC0D4974EDCE20" modified="2015-11-11" version="1">MDKSIESVPNFSEGRKQAGELGVSVTGSAVVGLIPKEALLAAGQFYSQEQSEARFVAAAAERLSLSQLNGFLPGKEVIEYHLELA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUW6</accession>
    <name>A0A0M2UUW6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Beta sliding clamp</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BROFUL_02504</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication as well as for processivity of DNA replication.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Forms a ring-shaped head-to-tail homodimer around DNA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the beta sliding clamp family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000235">
        <property type="protein sequence ID" value="KKO18781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18781">
        <property type="protein sequence ID" value="KKO18781"/>
        <property type="gene ID" value="BROFUL_02504"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009360">
        <property type="term" value="C:DNA polymerase III complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008408">
        <property type="term" value="F:3'-5' exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00140">
        <property type="entry name" value="beta_clamp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001001">
        <property type="entry name" value="DNA_polIII_beta"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022635">
        <property type="entry name" value="DNA_polIII_beta_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022637">
        <property type="entry name" value="DNA_polIII_beta_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022634">
        <property type="entry name" value="DNA_polIII_beta_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30478">
        <property type="entry name" value="PTHR30478"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00712">
        <property type="entry name" value="DNA_pol3_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02767">
        <property type="entry name" value="DNA_pol3_beta_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02768">
        <property type="entry name" value="DNA_pol3_beta_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000804">
        <property type="entry name" value="DNA_pol_III_b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00480">
        <property type="entry name" value="POL3Bc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00663">
        <property type="entry name" value="dnan"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 9" id="KW-0235">DNA replication</keyword>
    <keyword evidence="8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7 9" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="5 9" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DNA_pol3_beta" evidence="10">
        <location>
            <begin position="1"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="DNA_pol3_beta_2" evidence="11">
        <location>
            <begin position="134"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="domain" description="DNA_pol3_beta_3" evidence="12">
        <location>
            <begin position="247"/>
            <end position="356"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRNR" id="PIRNR000804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00712"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF02767"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF02768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO18781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="366" mass="40082" checksum="9C29365812154C72" modified="2015-11-11" version="1">MKLHFSGKDLFGGFNLVAGIVPTSALKGVLKGVKVEVKNERVEFVATDLEVLVKYVLPAGKCEGEGGIVLPAVRVNNVLREWAGNDEISVSIEEGNCTLKSGGGHFKIAGEDFRQFPEIGRIKTKGLVEVDGGIIADMVGRVVHSVSTVKVRSMLCGIFVRVMDDYIIMVAADGNRMSSVKRKVNNPEGISFDGIVAVKCLTFLQRFVSECKGILTLGMGEQQVCFAGEKGEIISQLIEGQYPKYEELIPKGNDKRVEVDRNQLLSGVRMASFMTNEEYRIVKFIFRQGKLLLSSRTADVGEAELEIAVGYDGPDLEISFDPEYVIDALKVSDNDTVVIELSDCDSAALIRTGYEQLDVIMPIETK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUY4</accession>
    <name>A0A0M2UUY4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Hemerythrin domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01417</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000146">
        <property type="protein sequence ID" value="KKO19858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19858">
        <property type="protein sequence ID" value="KKO19858"/>
        <property type="gene ID" value="BROFUL_01417"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012312">
        <property type="entry name" value="Hemerythrin-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01814">
        <property type="entry name" value="Hemerythrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hemerythrin" evidence="1">
        <location>
            <begin position="6"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="160" mass="17877" checksum="8E79E1917BCFBEF0" modified="2015-11-11" version="1">MVKLDPIAEFREDHRKVRDGLLELMEALQSKNVAKARKILDEINVLVGPHFRYEEEVLYPTLRVFLGEYVDQLLTEHDGVIATARSCAGLLKKDSLTDEEAKLAVSAARALLVHVSNCDGLSILSERLNKNEIDALSEKLATARKAGVPLLDWADTIRNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUZ5</accession>
    <name>A0A0M2UUZ5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_03041</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18314.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18314">
        <property type="protein sequence ID" value="KKO18314"/>
        <property type="gene ID" value="BROFUL_03041"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04590">
        <property type="entry name" value="CBS_pair_CorC_HlyC_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002550">
        <property type="entry name" value="CNNM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044751">
        <property type="entry name" value="Ion_transp-like_CBS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01595">
        <property type="entry name" value="DUF21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51846">
        <property type="entry name" value="CNNM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0129">CBS domain</keyword>
    <keyword evidence="5 7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2 7 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="77"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="101"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="142"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="domain" description="CNNM transmembrane" evidence="10">
        <location>
            <begin position="7"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="9">
        <location>
            <begin position="214"/>
            <end position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO18314.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="340" mass="39196" checksum="88D574C98FCC61C7" modified="2015-11-11" version="1">MNPMHFSTLEIIIMLILFFLLLFVSAFFSLTETSLFSLNKIRLDYLIKQKNKRAVSIFNIINEPDKLLSTLLTGNNIVNTTVSTIGTTVAIYYLQEWGVILAPLIVAFILLLFAETFPKVLATQFPEHLSLIIVKPFEWVRWLLSPCVTLITYLTYLFFNLFGLKIEYKKTIFSREEVKHIIKESGETGNLVDGEHKLLHKIFEFSDKLAKQVMVPRQRIVAIHTDMTREDIMRIITDEGHTRYPVYRHSLDTIIGIVHVKAIINMVANNPLFILEDLIMEPYFVAEDKKISTIFTEFQQQGLHIAIVRDAHGVISGLIEIKDILRVIFGELKEKTVPEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUZ8</accession>
    <name>A0A0M2UUZ8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Thiamine-phosphate pyrophosphorylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01432</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000146">
        <property type="protein sequence ID" value="KKO19873.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19873">
        <property type="protein sequence ID" value="KKO19873"/>
        <property type="gene ID" value="BROFUL_01432"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00564">
        <property type="entry name" value="TMP_TenI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036206">
        <property type="entry name" value="ThiamineP_synth_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022998">
        <property type="entry name" value="ThiamineP_synth_TenI"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02581">
        <property type="entry name" value="TMP-TENI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51391">
        <property type="entry name" value="SSF51391"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TMP-TENI" evidence="1">
        <location>
            <begin position="14"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19873.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="156" mass="17267" checksum="34AD2557EFB8C9AF" modified="2015-11-11" version="1">MENDLLKIFSDVKLYVIISSDLIKKPFEEVLHDVIEGGADVIQLREKMMSDAEFLTIAHKARKATAQSKTIFIVNDRAEIARQADADGLHIGQSDIDINTARKILGYNKIIGVSTHHISQARKAQQSGANYVGVGPVFPTATKGYEPSVGWIIYNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV08</accession>
    <name>A0A0M2UV08_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02981</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000281">
        <property type="protein sequence ID" value="KKO18324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18324">
        <property type="protein sequence ID" value="KKO18324"/>
        <property type="gene ID" value="BROFUL_02981"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="94" mass="10785" checksum="944FFD3E4F4CDF92" modified="2015-11-11" version="1">MHIIIVDVSYRKTDNVRIEFDKFRLQGRYRVFHKHQIQYPDRVTFPSGGFSHKACTDRYNGHGSAVSIGNDNEDIHTGTIPGYPTTIIPLIPKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV14</accession>
    <name>A0A0M2UV14_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Putative methyl-accepting chemotaxis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_01844</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000190">
        <property type="protein sequence ID" value="KKO19465.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19465">
        <property type="protein sequence ID" value="KKO19465"/>
        <property type="gene ID" value="BROFUL_01844"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033479">
        <property type="entry name" value="dCache_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029151">
        <property type="entry name" value="Sensor-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02743">
        <property type="entry name" value="dCache_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103190">
        <property type="entry name" value="SSF103190"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="7"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="308"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="domain" description="Cache" evidence="7">
        <location>
            <begin position="49"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02743"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19465.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="339" mass="38255" checksum="CC6AB1584F50FC6D" modified="2015-11-11" version="1">MKPVLKILIASGIAIFTFLVIMGPLTYSTLVPSIRNEFANHLVSVREIKKLQIQNFFQKKYGDIHVLSKNPIVVQSLPRFSNAFKSGGFDDAEYKQVDTYYGPLLEHFLRQYGYNNIFFVDTDGNVVFGVKRDEYIGTNLYSGDYSSFTIGEVFKEGLSNVKFSDLAWCEETKDFIFMGASPVYDITNKLLGVVICETPYSAIDSFLSQTDGLGETGEIYIVGDDYFMRSKSRFLTQNTILKLEINTQGVQEALRGNTDVKIVKDYRNIPVLSAYTPLDNLRDVNWVLLVKIDVKEAYHPILAVKTDLIIIGAVIGSITGIYIYFTVRRRAKSIPLTPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV37</accession>
    <name>A0A0M2UV37_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01368</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000141">
        <property type="protein sequence ID" value="KKO19918.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19918">
        <property type="protein sequence ID" value="KKO19918"/>
        <property type="gene ID" value="BROFUL_01368"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="87"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="162"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="185"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="222"/>
            <end position="247"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19918.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="261" mass="30109" checksum="8B0300B33266A5F9" modified="2015-11-11" version="1">MMWLRDDTMIYFSLAICLILMIFLSFAIYGLWVNYIHDKMIRGFLFPGTMVHELSHAFVCLITGTTITELNLFTTDSAGIKYDKPKIPVLFDFAIAAAPLFGCAYVIFFTSKMLGNPIHLDDTFPKEIHFTLKGFFDLFQHLLDTVWSTFNSFKKQLHLKDVRHILFLVTLIIFAISIAPHKQDIKYLVLGFTIISLILFFLDKAGISLLKYGWWKHFIRELWLLATIIIAVLTTLLSVTLTIMGFIKAYRLTFGQKSARK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV72</accession>
    <name>A0A0M2UV72_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Type IIS restriction/modification enzyme-site-specific DNA methyltransferase (Adenine specific)</fullName>
            <ecNumber evidence="1">2.1.1.72</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02406</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.72" evidence="1"/>
    <dbReference type="EMBL" id="LAQJ01000230">
        <property type="protein sequence ID" value="KKO18891.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18891">
        <property type="protein sequence ID" value="KKO18891"/>
        <property type="gene ID" value="BROFUL_02406"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2991"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009007">
        <property type="term" value="F:site-specific DNA-methyltransferase (adenine-specific) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18891.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="252" mass="28742" checksum="93FDD16AE44994DE" modified="2015-11-11" version="1">MSPDRYIYPAVKHGIVQNDIVKPVVVGAGLKPAPTRHLPPEIAAGLHDVSKRTEWNKPAPPEYALPTEIWREVVARRKRYEEVRRKLESGEVRDINDLITFNLDIRQFAQDVISNCEGPDLLRAFWNVIKDISILDPTCGSGAFLFAALNILEPLYEACLDRMEEMLEDESAKHNIVGAIHESPLRHTPHGYPLLPHRKLEDFSHTLEQVAHHPNKQYFIYKGIILNNLYGVDVMEEAVEICKLRLFLKLAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVC0</accession>
    <name>A0A0M2UVC0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="15">Branched-chain-amino-acid aminotransferase</fullName>
            <shortName evidence="15">BCAT</shortName>
            <ecNumber evidence="15">2.6.1.42</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="primary">ilvE</name>
        <name evidence="16" type="ORF">BROFUL_01757</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 15">Acts on leucine, isoleucine and valine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 15">
            <text>2-oxoglutarate + L-isoleucine = (S)-3-methyl-2-oxopentanoate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:24801"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:35146"/>
            <dbReference type="ChEBI" id="CHEBI:58045"/>
            <dbReference type="EC" id="2.6.1.42"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 15">
            <text>2-oxoglutarate + L-leucine = 4-methyl-2-oxopentanoate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:18321"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:17865"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57427"/>
            <dbReference type="EC" id="2.6.1.42"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 15">
            <text>2-oxoglutarate + L-valine = 3-methyl-2-oxobutanoate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:24813"/>
            <dbReference type="ChEBI" id="CHEBI:11851"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57762"/>
            <dbReference type="EC" id="2.6.1.42"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4 14">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="6 15">Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 4/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="8 15">Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 4/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7 15">Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 4/4.</text>
    </comment>
    <comment type="similarity">
        <text evidence="9 13">Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.42" evidence="15"/>
    <dbReference type="EMBL" id="LAQJ01000182">
        <property type="protein sequence ID" value="KKO19530.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19530">
        <property type="protein sequence ID" value="KKO19530"/>
        <property type="gene ID" value="BROFUL_01757"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2178"/>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00058"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00048">
        <property type="reaction ID" value="UER00073"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00049">
        <property type="reaction ID" value="UER00062"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052656">
        <property type="term" value="F:L-isoleucine transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052654">
        <property type="term" value="F:L-leucine transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050048">
        <property type="term" value="F:L-leucine:2-oxoglutarate aminotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052655">
        <property type="term" value="F:L-valine transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009098">
        <property type="term" value="P:leucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009099">
        <property type="term" value="P:valine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001544">
        <property type="entry name" value="Aminotrans_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018300">
        <property type="entry name" value="Aminotrans_IV_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036038">
        <property type="entry name" value="Aminotransferase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005785">
        <property type="entry name" value="B_amino_transI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043132">
        <property type="entry name" value="BCAT-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043131">
        <property type="entry name" value="BCAT-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01063">
        <property type="entry name" value="Aminotran_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56752">
        <property type="entry name" value="SSF56752"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01122">
        <property type="entry name" value="ilvE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00770">
        <property type="entry name" value="AA_TRANSFER_CLASS_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 15" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="15" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="12 15" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="11 14" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="15 16" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000627"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00003109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00004824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00004931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00005072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00009320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU004106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU004516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="RuleBase" id="RU364094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="KKO19530.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="287" mass="31495" checksum="B90AB501F4DBC924" modified="2015-11-11" version="1">MGLKIYLNGQILPQEDAKISVFDHGLLYGDGVFEGIRAYNGKIFMLQQHMDRLYDSAKAIALTIPITKDEMAEAIKKTMSANNLTDSYIRLVVTRGVGKLGLDPNKCVTPQIIIITDTIELYSKALYENGLDIVTVTTIRNHFSALDPKIKSLNYLNNILAKLESLEAGAGEALMLNKDGYVAECAGDNIFIFKDNVLLTPPASAGILIGITRNVVMDLAVKLGMQVKEYLMTRYDVYIADECFLTGTAAEIIPVVKIDGRVIGNGKPGKVTLELLKGYRDLTRTGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVF7</accession>
    <name>A0A0M2UVF7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02808</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000265">
        <property type="protein sequence ID" value="KKO18484.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18484">
        <property type="protein sequence ID" value="KKO18484"/>
        <property type="gene ID" value="BROFUL_02808"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18484.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="136" mass="15422" checksum="010EC068E4707A6A" modified="2015-11-11" version="1">MRSKNRLTVLLLVLMVSHVCTLVVRANETTGLPKAYLIAGVPHHKQITGLSCGPASLEILYDFWGEDIDQRAITDVTRTSSIGTYTWDMMRAGYFSHLSRAQEDSFPATPPRLATRKGHWLRLFFPRVRQPVVDRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVN6</accession>
    <name>A0A0M2UVN6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 4">Nitrogen fixation protein NifU</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_01660</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the NifU family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19625">
        <property type="protein sequence ID" value="KKO19625"/>
        <property type="gene ID" value="BROFUL_01660"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2049"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009399">
        <property type="term" value="P:nitrogen fixation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06664">
        <property type="entry name" value="IscU_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007419">
        <property type="entry name" value="BFD-like_2Fe2S-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041854">
        <property type="entry name" value="BFD-like_2Fe2S-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034904">
        <property type="entry name" value="FSCA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016217">
        <property type="entry name" value="N_fixation_NifU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010238">
        <property type="entry name" value="NIF_FeS_clus_asmbl_NifU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001075">
        <property type="entry name" value="NIF_FeS_clus_asmbl_NifU_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002871">
        <property type="entry name" value="NIF_FeS_clus_asmbl_NifU_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10093">
        <property type="entry name" value="PTHR10093"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04324">
        <property type="entry name" value="Fer2_BFD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01106">
        <property type="entry name" value="NifU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01592">
        <property type="entry name" value="NifU_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000375">
        <property type="entry name" value="NifU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117916">
        <property type="entry name" value="SSF117916"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02000">
        <property type="entry name" value="NifU_proper"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0535">Nitrogen fixation</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NifU_N" evidence="6">
        <location>
            <begin position="4"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="domain" description="Fer2_BFD" evidence="7">
        <location>
            <begin position="134"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="domain" description="NifU" evidence="5">
        <location>
            <begin position="214"/>
            <end position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006420"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00015278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR000375"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF04324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="284" mass="31432" checksum="AEBDC99EB9DF5045" modified="2015-11-11" version="1">MWDYSEKVKDHFFRPRNVGEIENPDAVGEVGSLACGDALKLMLKLDTSGRIADVKFKTFGCGSAIASASALTEMVKGKTLDEAWKITDNDIAEYLDGLPEQKLHCSVMGREALEAAIASYRGLKEEKPVEEGIIVCKCFGVTDNKIAHEVREHKLTTIEQVTNYCKAGGGCGSCHPQIQAIIDEVWQKEKEKTLFEMARKPAKKLTNIQKMKLIQETIERDIRPTLQSDGGDIELVDIDGDRVMVSFRGSCVECPSSKVTLKSTVEAKLREFVTDTVIVEEVVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVN9</accession>
    <name>A0A0M2UVN9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_02237</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the glycosyltransferase 87 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19056">
        <property type="protein sequence ID" value="KKO19056"/>
        <property type="gene ID" value="BROFUL_02237"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016758">
        <property type="term" value="F:hexosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018584">
        <property type="entry name" value="GT87"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09594">
        <property type="entry name" value="GT87"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="77"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="145"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="168"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="196"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="288"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="326"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="368"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="392"/>
            <end position="411"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00024033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="416" mass="47096" checksum="45819EA258E7B607" modified="2015-11-11" version="1">MNLKTNQQKRTYKVLIIIFAVIILVFCVLPVCNYFRGSTKDYGRFYQAGQSMLSGGDIYIKGGETFQFLYPPTAAVLYALMSIFGFLPMIILFVMTNAALWIVSIFLSVYLTTGKIMMQHPLLYLVPTACCIPFVWDIFQLGQPNLWLLACMLGAFVCLQLKKEWPAGVLIAFAASLKAFPILALVYLLYRQRWRASLSTVVFLIFFLAVLPIPFRGVQRNFQDLKTWTNGMVLRYDTGSIAQRPGRGYGWKNQSLIAVANRLLRPVDAFHSKSNPVYVNIANLEFKYLNIIIIATAMGLCLFYIGSMPRPAQRTLHTDSIEYAMLLILILIFTPLSFTYFYVWLLYPLMVAVNTLLSLTYPSRAGNLAFIWFVVCLLLLSFMLPIPGFRWFAAIGSTLGACVLLLGGLGWKLRHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVR2</accession>
    <name>A0A0M2UVR2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Pyrophosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_01140</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000123">
        <property type="protein sequence ID" value="KKO20138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20138">
        <property type="protein sequence ID" value="KKO20138"/>
        <property type="gene ID" value="BROFUL_01140"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1411"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004427">
        <property type="term" value="F:inorganic diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009678">
        <property type="term" value="F:pyrophosphate hydrolysis-driven proton transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004131">
        <property type="entry name" value="PPase-energised_H-pump"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31998">
        <property type="entry name" value="PTHR31998"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03030">
        <property type="entry name" value="H_PPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001265">
        <property type="entry name" value="H+-PPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01104">
        <property type="entry name" value="V_PPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0406">Ion transport</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-1278">Translocase</keyword>
    <keyword evidence="3 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="91"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="145"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="214"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="252"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="353"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="391"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="414"/>
            <end position="436"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="457"/>
            <end position="487"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="493"/>
            <end position="516"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="560"/>
            <end position="578"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="623"/>
            <end position="642"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="694"/>
            <end position="718"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO20138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="778" mass="81611" checksum="00334F84208D895B" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVT4</accession>
    <name>A0A0M2UVT4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Hydroxyacylglutathione hydrolase (Glyoxylase II)</fullName>
            <ecNumber evidence="2">3.1.2.6</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">hagH</name>
        <name evidence="2" type="ORF">BROFUL_02699</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.2.6" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000249">
        <property type="protein sequence ID" value="KKO18604.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18604">
        <property type="protein sequence ID" value="KKO18604"/>
        <property type="gene ID" value="BROFUL_02699"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3338"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004416">
        <property type="term" value="F:hydroxyacylglutathione hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="17"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18604.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="190" mass="20935" checksum="B6CBA0B3A706E804" modified="2015-11-11" version="1">MMMNDLILRRFTVGSFPVNGYLVADPVTRIGAFIDPGGFSKEIEVFVKERHILLRHLFITHGHWDHTEGLVEFTGRYQAQSYAGEGEVNAASHSLRGGEIIEVGHLQFHALPTPGHTPCGISYSVPGCVFTGDALFCGTVGGTGSLKEAKRQIDHIRKHVFSLPDETLVFPAHGPMTTVGIEKYTNPFFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVT5</accession>
    <name>A0A0M2UVT5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Histone deacetylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01127</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the histone deacetylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20168.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20168">
        <property type="protein sequence ID" value="KKO20168"/>
        <property type="gene ID" value="BROFUL_01127"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1397"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.800.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000286">
        <property type="entry name" value="His_deacetylse"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023801">
        <property type="entry name" value="His_deacetylse_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037138">
        <property type="entry name" value="His_deacetylse_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023696">
        <property type="entry name" value="Ureohydrolase_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00850">
        <property type="entry name" value="Hist_deacetyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01270">
        <property type="entry name" value="HDASUPER"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52768">
        <property type="entry name" value="SSF52768"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hist_deacetyl" evidence="2">
        <location>
            <begin position="19"/>
            <end position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20168.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="311" mass="34600" checksum="8C439EA2BB1EA9F0" modified="2015-11-11" version="1">MTLLIYDDIFLRHDTGHGHPENARRLENTVSHLRQSNQWKQFRIEKPRAASIEEVELIHPQAYIETVKKFADTGGGWLDADTVVSAASYDAALHAAGAPLTAIDLIMTGEEENAFCLIRPPGHHATPSRGMGFCLFNNAAIAAQYLRSKYRLERVLVVDWDVHHGNGTQDAFYQDPAVFYCSLHRYPFYPGSGRKEETGQGKGKGYTLNIPLSADTQSKKYLELFANAMDTCTASFLPEFILISAGFDTYEKDPIGGLNLTTEDFGTLTEIVMKAADKYCHGRIVSCLEGGYHLSALPLCIESHLKALLRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVX5</accession>
    <name>A0A0M2UVX5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02605</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18654">
        <property type="protein sequence ID" value="KKO18654"/>
        <property type="gene ID" value="BROFUL_02605"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004155">
        <property type="entry name" value="PBS_lyase_HEAT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00567">
        <property type="entry name" value="EZ_HEAT"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="SSF48371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="276" mass="29968" checksum="AD77E99C661BB235" modified="2015-11-11" version="1">MAIAALLLVSTMSGHQMLWAETPAGDGSLDIKYSNGQLSAKLKNSPLEAVLKEIMSQSGARIWLNDSIDGTITIEFQSLPIREGVRRILRDKNYAFVFSHNDGKEGKLSIVSASKSKEIFTKGKEEPSRKLTPKPGLPVAKKSNAKKEPIAFETLAKDAAESEDPGKREDAIIALGESKDIRAVEILSKALASDPIEDVRLSAIDALLDIGDKNVADVLSVALNDRDPWVRESAVEALGEVGNEAAIEFIKHALNDEDGSVRELAQEILDELNIKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWB7</accession>
    <name>A0A0M2UWB7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Fructose-bisphosphatase</fullName>
            <ecNumber evidence="3">3.1.3.11</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02017</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>beta-D-fructose 1,6-bisphosphate + H2O = beta-D-fructose 6-phosphate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:11064"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:32966"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57634"/>
            <dbReference type="EC" id="3.1.3.11"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the FBPase class 2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.11" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000206">
        <property type="protein sequence ID" value="KKO19261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19261">
        <property type="protein sequence ID" value="KKO19261"/>
        <property type="gene ID" value="BROFUL_02017"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2513"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042132">
        <property type="term" value="F:fructose 1,6-bisphosphate 1-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006071">
        <property type="term" value="P:glycerol metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004464">
        <property type="entry name" value="FBPase_class-2/SBPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30447">
        <property type="entry name" value="PTHR30447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03320">
        <property type="entry name" value="FBPase_glpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0802">TPR repeat</keyword>
    <feature type="repeat" description="TPR" evidence="4">
        <location>
            <begin position="514"/>
            <end position="547"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="867" mass="100364" checksum="28B1E73218A17708" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWK1</accession>
    <name>A0A0M2UWK1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Chalcone-flavanone isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01945</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000199">
        <property type="protein sequence ID" value="KKO19346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19346">
        <property type="protein sequence ID" value="KKO19346"/>
        <property type="gene ID" value="BROFUL_01945"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016872">
        <property type="term" value="F:intramolecular lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.70.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016087">
        <property type="entry name" value="Chalcone_isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016088">
        <property type="entry name" value="Chalcone_isomerase_3-sand"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036298">
        <property type="entry name" value="Chalcone_isomerase_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16036">
        <property type="entry name" value="Chalcone_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54626">
        <property type="entry name" value="SSF54626"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644123" evidence="1">
        <location>
            <begin position="22"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="domain" description="Chalcone_isomerase" evidence="2">
        <location>
            <begin position="21"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="187" mass="20518" checksum="57F7C7662676D199" modified="2015-11-11" version="1">MIRKILIVIFFALTIITTAQAKEIGGVNLPDTIMSGKEHLVLNGAGLRKKFFVKAYAGGLYLKTKEDSAKKIVNADEPMAIRLQFIYDGVSCKQLVEGWNEGFANATMGNPGPIKERADTFNSFFTEDARKGDIYDIVYAPGEGVYVSIKGKLMGTIKGLDFKKALFAIWLGEKPVDTSLKQGMLGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWK2</accession>
    <name>A0A0M2UWK2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01062</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20212.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20212">
        <property type="protein sequence ID" value="KKO20212"/>
        <property type="gene ID" value="BROFUL_01062"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00118">
        <property type="entry name" value="LysM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.350.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018392">
        <property type="entry name" value="LysM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036779">
        <property type="entry name" value="LysM_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01476">
        <property type="entry name" value="LysM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00257">
        <property type="entry name" value="LysM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54106">
        <property type="entry name" value="SSF54106"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51782">
        <property type="entry name" value="LYSM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="7"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="domain" description="LysM" evidence="3">
        <location>
            <begin position="147"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="domain" description="LysM" evidence="3">
        <location>
            <begin position="233"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="35"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="109"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="48"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="109"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20212.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="285" mass="31740" checksum="EC7753411A1BACCB" modified="2015-11-11" version="1">MKRDMQVGVTLGVIIMAIIGVFLSTRTSVKEPAIPIPEMEEETQDNAFEVTELSPDPQSADQESSKEVTATVQLPKQKEAPVSDIAKIDKQPAPKDDRIIEVEWKKAKEPEPAPIAMHDEKLPSESSPDEWKDISSGDNTNAAVQSTKYKVKSNDSLRKIAKKYYGDESKWLVIFNANQTKIHDRNSLRIGTELIIPDGKAVSQRTTKETKAETTTPSLSQMIHVQESELSVKKHTVLQGDSLYSLAVKYYQDGAKWNKILDANKNILKGTKSLKIGQELVIPDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWT3</accession>
    <name>A0A0M2UWT3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phosphoenolpyruvate carboxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02357</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18964">
        <property type="protein sequence ID" value="KKO18964"/>
        <property type="gene ID" value="BROFUL_02357"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2927"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008964">
        <property type="term" value="F:phosphoenolpyruvate carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015977">
        <property type="term" value="P:carbon fixation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01904">
        <property type="entry name" value="PEPcase_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007566">
        <property type="entry name" value="PEP_COase_arc-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14010">
        <property type="entry name" value="PEPcase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006677">
        <property type="entry name" value="UCP006677"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02751">
        <property type="entry name" value="PEPCase_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="490" mass="56544" checksum="C3A7F4C7284F3B10" modified="2015-11-11" version="1">MRKIPRTMSTQHPDNITMPFFIEGTCFRGEDEIKEAYYVFSHLRCDEQMWDCEGKEVDEFVIKKLLTRYDNYFKRYRIGKDCFVTLRVPNPMVEKSEGKILLETLESTPRSYDTAHQFYGSENIPPIFEVILPMTTSTEAINRVYYYYRDFVVGKQHRRCFEKDITIKEWIGEFKPETIEVIPLFEDIPYMLSADTMVENYIKDKPVSYQRVFLGRSDPALNYGMLSAILVAKIALQRLHALQERVRIPIYPILGLGSNLFRGNLSPLSVNECLKEYPSVQTFTIQSAFKYDYDEGSVTEAIQKINTHARTAPVFIQEELALDLTERLASAYRGQMKELAPLINEIARFVPQRRMRKLHIGLFGYSRSVEGITLPRVISFCASLYSIGLPPELLGLHILTEKDFAFLRTAYPSFLEDLSLAASYYNRDVKKLISPKMTNDIEKALGMVKYTENLLHSEYTSQIIQAILSGKKETVTENVIAAGKIRRFLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWW1</accession>
    <name>A0A0M2UWW1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7">Phosphoribosylamine--glycine ligase</fullName>
            <ecNumber evidence="2 7">6.3.4.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">GARS</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Glycinamide ribonucleotide synthetase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Phosphoribosylglycinamide synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">purD</name>
        <name evidence="10" type="ORF">BROFUL_00671</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>5-phospho-beta-D-ribosylamine + ATP + glycine = ADP + H(+) + N(1)-(5-phospho-beta-D-ribosyl)glycinamide + phosphate</text>
            <dbReference type="Rhea" id="RHEA:17453"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:58681"/>
            <dbReference type="ChEBI" id="CHEBI:143788"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.4.13"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 7">Purine metabolism; IMP biosynthesis via de novo pathway; N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-alpha-D-ribose 1-diphosphate: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the GARS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.13" evidence="2 7"/>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20553.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20553">
        <property type="protein sequence ID" value="KKO20553"/>
        <property type="gene ID" value="BROFUL_00671"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.857"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00125"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004637">
        <property type="term" value="F:phosphoribosylamine-glycine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009113">
        <property type="term" value="P:purine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.600.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00138">
        <property type="entry name" value="GARS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020561">
        <property type="entry name" value="PRibGlycinamid_synth_ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000115">
        <property type="entry name" value="PRibGlycinamide_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020560">
        <property type="entry name" value="PRibGlycinamide_synth_C-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037123">
        <property type="entry name" value="PRibGlycinamide_synth_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020559">
        <property type="entry name" value="PRibGlycinamide_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020562">
        <property type="entry name" value="PRibGlycinamide_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011054">
        <property type="entry name" value="Rudment_hybrid_motif"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43472">
        <property type="entry name" value="PTHR43472"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01071">
        <property type="entry name" value="GARS_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02843">
        <property type="entry name" value="GARS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02844">
        <property type="entry name" value="GARS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01210">
        <property type="entry name" value="GARS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51246">
        <property type="entry name" value="SSF51246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00877">
        <property type="entry name" value="purD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00184">
        <property type="entry name" value="GARS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 7 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 7" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="9">
        <location>
            <begin position="107"/>
            <end position="313"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013255"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO20553.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="424" mass="45865" checksum="9DCE2ED80BEF3993" modified="2015-11-11" version="1">MKILVIGSGGREHALVWKIAQSPLVKKIYCAPGNPGIAEIAECVDIDPVHIDGLYNFALKQKIDLTVVGPEDALMAGITDRFREGRLQIFGPTKRASAIEGSKVFAKTLMRKHGIPTADFKVFEDIKQAQKQVTTAEFPLVIKADGLAKGKGVFVCKTPEEAHQHLEDIMKEKIFGHAGDRVVIEEFLSGEEVSILAVTDGNTILPLSSAQDHKAVYDGDKGPNTGGMGAYSPVPLVTQQLQFFIEENILVPAIHAMKRENRPYKGVLYAGLIITSAGPKVLEFNARFGDPETQAILMRMKSDLVPILLLAEKNMLGDAEIEWNDGASVCVVMTSKGYPDAYEKGIPISGLETIKESNHLRVFHAGTAMKGGKISTNGGRVLGVTALGNDLPEAQNMAYGAIGKLSFAGAHYRRDIGAKAMCRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX12</accession>
    <name>A0A0M2UX12_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Cytochrome c domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_00868</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000106">
        <property type="protein sequence ID" value="KKO20397.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20397">
        <property type="protein sequence ID" value="KKO20397"/>
        <property type="gene ID" value="BROFUL_00868"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1097"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0349">Heme</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644059" description="Cytochrome c domain-containing protein" evidence="5">
        <location>
            <begin position="25"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="6">
        <location>
            <begin position="144"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20397.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="238" mass="26397" checksum="3A9ED005DDFEAF59" modified="2015-11-11" version="1">MKTVYKIFLGFYLCLAMVPYAVKAEDISQDNTSNDGQPSGEKAVQVVTACDGRKKVIVEGCSEGETMPAQKARKVAELLMTLMEFCEDEITAKLPKTGMSIQLSVNGMPYVTVGDTEEIPLVLVHGGRPHTERERKIWTAEKDRMIAEGYALFHNPSLGKNGISCDMCHPDASNTHPETYPKYQTQMNKAVLLRDMINWCIENPMEGAKLAEDDPKMKAVEAYILSARAGKQLEPGKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX64</accession>
    <name>A0A0M2UX64_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01737</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000180">
        <property type="protein sequence ID" value="KKO19566.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19566">
        <property type="protein sequence ID" value="KKO19566"/>
        <property type="gene ID" value="BROFUL_01737"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19566.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="286" mass="30644" checksum="D84820E01FD29E91" modified="2015-11-11" version="1">MDDRDDYTEVWLEDMDEGFDNSYYETIRNVLAPEYRDLDPEDINALLEDVFSGMSPEEIESFWGTLGKIGKSVAGVASKVLPVAAPVLGTALGGPVGGAIGGAVGKLAGKALGGAPGKPIGGQLSQVLGGGSPAVSQLMSFLQNPALLQSILGQVLGKAGRGTVPVGQQGASAPFGSFMNALSTLANQAAAEANAREDSQGTPSYLLDKQGNFLCDPAVPEERAQILLEQLHEDYPAETDDDEGESLTEWLSEAGLLENRPRSRRRYGSAFRRYPRSRYRRYRGRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXL3</accession>
    <name>A0A0M2UXL3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Formate/nitrite transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_01589</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the FNT transporter (TC 2.A.44) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000168">
        <property type="protein sequence ID" value="KKO19701.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19701">
        <property type="protein sequence ID" value="KKO19701"/>
        <property type="gene ID" value="BROFUL_01589"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1967"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1080.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023271">
        <property type="entry name" value="Aquaporin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000292">
        <property type="entry name" value="For/NO2_transpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024002">
        <property type="entry name" value="For/NO2_transpt_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30520">
        <property type="entry name" value="PTHR30520"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01226">
        <property type="entry name" value="Form_Nir_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01005">
        <property type="entry name" value="FORMATE_NITRITE_TP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="25"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="63"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="110"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="154"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="188"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="233"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19701.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="296" mass="32034" checksum="A66A7BD32E8C9F5B" modified="2015-11-11" version="1">MLYTGNVDAIAAVSLKKATAMKHSLIGFLTLSVVAGFYIGFGVLLMVIAAAPVAAINPGIGKIVGGAVFPIALILVVIGGAELFTGYNLLLLKGSFRGTVSFGDSMLGWFWTYLGNLGGSMIFALLIYMSGVFAPDPWHAFLNKAATYKMNAPWWELFFRGIFCNWLVCLGIWSTFRCTSDSGKIIMCWWVLFCFVTTGMEHSVANMTFLTIANLLPHDPAVISWGKMFGWNLVPVTLGNIVGGSFFVTFLYWFATVTDERGAKKMGGIKGGSGSAELPRAGGTPEEIKDVKIKMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXQ6</accession>
    <name>A0A0M2UXQ6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01547</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000160">
        <property type="protein sequence ID" value="KKO19746.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19746">
        <property type="protein sequence ID" value="KKO19746"/>
        <property type="gene ID" value="BROFUL_01547"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1910"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1520.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007153">
        <property type="entry name" value="Adenosine_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036902">
        <property type="entry name" value="Ta1353-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36155">
        <property type="entry name" value="PTHR36155"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04008">
        <property type="entry name" value="Adenosine_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103165">
        <property type="entry name" value="SSF103165"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19746.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="93" mass="10077" checksum="0174EA07BC10E4F2" modified="2015-11-11" version="1">MAIRNALTVAAGHTFIILIKEAFPLNVLNAVKSCPEVCAIFCATANPVQVIVAETGQGRGVLGVIDGYRPKGVEGENDIRERRQLLRKIGYKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXR6</accession>
    <name>A0A0M2UXR6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">S-adenosylmethionine decarboxylase proenzyme</fullName>
            <shortName evidence="10">AdoMetDC</shortName>
            <shortName evidence="10">SAMDC</shortName>
            <ecNumber evidence="10">4.1.1.50</ecNumber>
        </recommendedName>
        <component>
            <recommendedName>
                <fullName evidence="10">S-adenosylmethionine decarboxylase beta chain</fullName>
            </recommendedName>
        </component>
        <component>
            <recommendedName>
                <fullName evidence="10">S-adenosylmethionine decarboxylase alpha chain</fullName>
            </recommendedName>
        </component>
    </protein>
    <gene>
        <name evidence="10" type="primary">speH</name>
        <name evidence="11" type="ORF">BROFUL_00922</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>H(+) + S-adenosyl-L-methionine = CO2 + S-adenosyl 3-(methylsulfanyl)propylamine</text>
            <dbReference type="Rhea" id="RHEA:15981"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57443"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="EC" id="4.1.1.50"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>pyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
        </cofactor>
        <text evidence="10">Binds 1 pyruvoyl group covalently per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="10">Amine and polyamine biosynthesis; S-adenosylmethioninamine biosynthesis; S-adenosylmethioninamine from S-adenosyl-L-methionine: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Heterotetramer of two alpha and two beta chains arranged as a dimer of alpha/beta heterodimers.</text>
    </comment>
    <comment type="PTM">
        <text evidence="10">Is synthesized initially as an inactive proenzyme. Formation of the active enzyme involves a self-maturation process in which the active site pyruvoyl group is generated from an internal serine residue via an autocatalytic post-translational modification. Two non-identical subunits are generated from the proenzyme in this reaction, and the pyruvate is formed at the N-terminus of the alpha chain, which is derived from the carboxyl end of the proenzyme. The post-translation cleavage follows an unusual pathway, termed non-hydrolytic serinolysis, in which the side chain hydroxyl group of the serine supplies its oxygen atom to form the C-terminus of the beta chain, while the remainder of the serine residue undergoes an oxidative deamination to produce ammonia and the pyruvoyl group blocking the N-terminus of the alpha chain.</text>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the prokaryotic AdoMetDC family. Type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.50" evidence="10"/>
    <dbReference type="EMBL" id="LAQJ01000110">
        <property type="protein sequence ID" value="KKO20365.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20365">
        <property type="protein sequence ID" value="KKO20365"/>
        <property type="gene ID" value="BROFUL_00922"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1162"/>
    <dbReference type="UniPathway" id="UPA00331">
        <property type="reaction ID" value="UER00451"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004014">
        <property type="term" value="F:adenosylmethionine decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006557">
        <property type="term" value="P:S-adenosylmethioninamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008295">
        <property type="term" value="P:spermidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.750">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.360.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00464">
        <property type="entry name" value="AdoMetDC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042286">
        <property type="entry name" value="AdoMetDC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003826">
        <property type="entry name" value="AdoMetDC_fam_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042284">
        <property type="entry name" value="AdoMetDC_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016067">
        <property type="entry name" value="S-AdoMet_deCO2ase_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017716">
        <property type="entry name" value="S-AdoMet_deCOase_pro-enz"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33866">
        <property type="entry name" value="PTHR33866"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02675">
        <property type="entry name" value="AdoMet_dc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56276">
        <property type="entry name" value="SSF56276"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03330">
        <property type="entry name" value="SAM_DCase_Bsu"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 10" id="KW-0068">Autocatalytic cleavage</keyword>
    <keyword evidence="2 10" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="7 10" id="KW-0456">Lyase</keyword>
    <keyword evidence="5 10" id="KW-0620">Polyamine biosynthesis</keyword>
    <keyword evidence="9 10" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 10" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="8 10" id="KW-0704">Schiff base</keyword>
    <keyword evidence="4 10" id="KW-0745">Spermidine biosynthesis</keyword>
    <keyword evidence="6 10" id="KW-0865">Zymogen</keyword>
    <feature type="chain" id="PRO_5023384791" description="S-adenosylmethionine decarboxylase beta chain" evidence="10">
        <location>
            <begin position="1"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5023384790" description="S-adenosylmethionine decarboxylase alpha chain" evidence="10">
        <location>
            <begin position="63"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with substrate; via pyruvic acid" evidence="10">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; for processing activity" evidence="10">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor; for catalytic activity" evidence="10">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <feature type="site" description="Cleavage (non-hydrolytic); by autolysis" evidence="10">
        <location>
            <begin position="62"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="modified residue" description="Pyruvic acid (Ser); by autocatalysis" evidence="10">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023066"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023317"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO20365.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="141" mass="15492" checksum="44A25C8B053262B3" modified="2015-11-11" version="1">MDTLGRHLILEAWGCGKEIIDSVDIVKSILIKATEAAKATLVDLVCHRFSPYGVTGVAILAESHISVHTWPEYGYAAVDIFICGNTINSQNAAAFITRAFHAQETSLIELERGDLLSKNIRNDKPTKETVCIVDSNTRSYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXS0</accession>
    <name>A0A0M2UXS0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Vitamin B12 transporter BtuB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">btuB</name>
        <name evidence="9" type="ORF">BROFUL_00630</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the TonB-dependent receptor family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="SMR" id="A0A0M2UXS0"/>
    <dbReference type="EnsemblBacteria" id="KKO20647">
        <property type="protein sequence ID" value="KKO20647"/>
        <property type="gene ID" value="BROFUL_00630"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.796"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039426">
        <property type="entry name" value="BtuB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012910">
        <property type="entry name" value="Plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037066">
        <property type="entry name" value="Plug_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30069">
        <property type="entry name" value="PTHR30069"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07715">
        <property type="entry name" value="Plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="2 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="1 4" id="KW-0798">TonB box</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644075" evidence="6">
        <location>
            <begin position="26"/>
            <end position="781"/>
        </location>
    </feature>
    <feature type="domain" description="Plug" evidence="8">
        <location>
            <begin position="137"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="domain" description="TonB_dep_Rec" evidence="7">
        <location>
            <begin position="318"/>
            <end position="750"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="28"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="45"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF07715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="781" mass="86122" checksum="106172561FD8B990" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXW0</accession>
    <name>A0A0M2UXW0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF6473 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00594</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000082">
        <property type="protein sequence ID" value="KKO20687.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20687">
        <property type="protein sequence ID" value="KKO20687"/>
        <property type="gene ID" value="BROFUL_00594"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.748"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045524">
        <property type="entry name" value="DUF6473"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20078">
        <property type="entry name" value="DUF6473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6473" evidence="1">
        <location>
            <begin position="32"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20687.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="213" mass="24623" checksum="3CCEF4E114CDFE9B" modified="2015-11-11" version="1">MVTEGYATPDWEVVDYQMYCLDPEVIDRQTNTGLLLRGPKPQHLEKGKYFVCIGAAQTFGRFCEKPYPTLLQERLNVVTLNLGYGGAGPSFFSKDNDRLLKYINNARFAIIQVMSGRSESNSLFESRGLGFYTRISDGTSIGCDDAFRELLKENDRDYIKKIVAETRHNWVNNYKELLEKITIPKILFWFSVRKPHYREKYDDVSSLFGNFPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXW7</accession>
    <name>A0A0M2UXW7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">DNA helicase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01974</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19314.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19314">
        <property type="protein sequence ID" value="KKO19314"/>
        <property type="gene ID" value="BROFUL_01974"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2457"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016818">
        <property type="term" value="F:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006139">
        <property type="term" value="P:nucleobase-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006555">
        <property type="entry name" value="ATP-dep_Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045028">
        <property type="entry name" value="DinG/Rad3-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014013">
        <property type="entry name" value="Helic_SF1/SF2_ATP-bd_DinG/Rad3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006554">
        <property type="entry name" value="Helicase-like_DEXD_c2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006935">
        <property type="entry name" value="Helicase/UvrB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11472">
        <property type="entry name" value="PTHR11472"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13307">
        <property type="entry name" value="Helicase_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04851">
        <property type="entry name" value="ResIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00488">
        <property type="entry name" value="DEXDc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00491">
        <property type="entry name" value="HELICc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51193">
        <property type="entry name" value="HELICASE_ATP_BIND_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="5">
        <location>
            <begin position="139"/>
            <end position="442"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="852"/>
            <end position="874"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="852"/>
            <end position="866"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19314.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="874" mass="98787" checksum="CB27A78EDCF77099" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY06</accession>
    <name>A0A0M2UY06_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_00536</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000075">
        <property type="protein sequence ID" value="KKO20737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20737">
        <property type="protein sequence ID" value="KKO20737"/>
        <property type="gene ID" value="BROFUL_00536"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003369">
        <property type="entry name" value="TatA/B/E"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02416">
        <property type="entry name" value="TatA_B_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0653">Protein transport</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0811">Translocation</keyword>
    <keyword evidence="2 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="69" mass="7856" checksum="606F6EA99C886D5B" modified="2015-11-11" version="1">MISMPGGWEWIVIGIIVFVVFGKRLPNTMKTIGKSFANFRQGFKGVEKEIKEVKEIKNDIDTITKLKIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY18</accession>
    <name>A0A0M2UY18_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00821</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000103">
        <property type="protein sequence ID" value="KKO20465.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20465">
        <property type="protein sequence ID" value="KKO20465"/>
        <property type="gene ID" value="BROFUL_00821"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20465.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="106" mass="12245" checksum="F87F5193539515BF" modified="2015-11-11" version="1">MFFGNRHLVLSVVMQNFHVFRVTWTNLLVALSGNTNEREMSVNNFFLGNGFFVLLHCTSTVNAFWQILKNKNGRQWQPHNPCVGASWSKKDLKNLQSSLLVVQYQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY94</accession>
    <name>A0A0M2UY94_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Diguanylate cyclase/phosphodiesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00440</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000058">
        <property type="protein sequence ID" value="KKO20827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20827">
        <property type="protein sequence ID" value="KKO20827"/>
        <property type="gene ID" value="BROFUL_00440"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="1"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="4"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20827.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="163" mass="18306" checksum="722E3DCFF22F5EB5" modified="2015-11-11" version="1">MITDYRLDWTDGLWILRSVRKQYPSMPVVMITDHGSEEIAVEGMKSGLSDYILKRKLHDLPVVLKKNLMNARLGKGYSTSGIQKNISHGRHATTETISDYAYTLRVESDGTFVCECVTDAFTPLTGHTLEEIDGHDGWYSLICPEDKTLFSSTGIICFPASRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYE4</accession>
    <name>A0A0M2UYE4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Ammonium transporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_00714</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the ammonia transporter channel (TC 1.A.11.2) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20595">
        <property type="protein sequence ID" value="KKO20595"/>
        <property type="gene ID" value="BROFUL_00714"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.906"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008519">
        <property type="term" value="F:ammonium transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029020">
        <property type="entry name" value="Ammonium/urea_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001905">
        <property type="entry name" value="Ammonium_transpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018047">
        <property type="entry name" value="Ammonium_transpt_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024041">
        <property type="entry name" value="NH4_transpt_AmtB-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00909">
        <property type="entry name" value="Ammonium_transp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00836">
        <property type="entry name" value="amt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01219">
        <property type="entry name" value="AMMONIUM_TRANSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0924">Ammonia transport</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0732">Signal</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 8" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="9">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644094" description="Ammonium transporter" evidence="9">
        <location>
            <begin position="31"/>
            <end position="509"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="54"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="88"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="141"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="168"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="207"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="250"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="279"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="308"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="333"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="367"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="406"/>
            <end position="429"/>
        </location>
    </feature>
    <feature type="domain" description="Ammonium_transp" evidence="10">
        <location>
            <begin position="54"/>
            <end position="454"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU362002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO20595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="509" mass="54987" checksum="F6D80C9EDBD5730B" modified="2015-11-11" version="1">MKFVTNKMKTNVWLLLAVGMVVLGSGIVWAADPNGSQTYSDSIAGLKFSVNFIWTLLGVFLVFSMQAGFAFLGGFLRQKNMLSYMAHCFIDSTFGAMVFYFFGFAFMYGGSKLAPGLENGNAWIGSDGFMLLAGSYDVQTIMFWLFQMVFATKAVSIIAGAVAERLKFGAYLIYSFLMCGLIYPIYGHWVWGGGWLSTLPFGSGVKDFAGCACVHMIGGIMAFVGAWVLGPRKGKYNPDGSPNAIPGHNLAYVVIGTLILAFGWFGFNAGSTLAATDLRISVIAANTFIAAAAGATMMLFLTWAMTGYIDVPYICNGALAGLVAITAPCAYVAPWAAVVIGVIAAFVMRGALWLVEVKMKVDDPLGAVAVHAANGIWGMLAVGFFADGTYGGVSGLITGSGWQLLAQFIGTVVALAWAFAWGCGVFYIIKYHMGIRVSDLVEYEGVDVHVHGSPCYPVEEGIVSISGEVIEEQREIEREQLSMLEQAMSNDATREKIYSEKLGRWYMHW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYF9</accession>
    <name>A0A0M2UYF9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Lipoprotein signal peptidase</fullName>
            <ecNumber evidence="6">3.4.23.36</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Prolipoprotein signal peptidase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Signal peptidase II</fullName>
            <shortName evidence="6">SPase II</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6 8" type="primary">lspA</name>
        <name evidence="8" type="ORF">BROFUL_01756</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">This protein specifically catalyzes the removal of signal peptides from prolipoproteins.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>Release of signal peptides from bacterial membrane prolipoproteins. Hydrolyzes -Xaa-Yaa-Zaa-|-(S,diacylglyceryl)Cys-, in which Xaa is hydrophobic (preferably Leu), and Yaa (Ala or Ser) and Zaa (Gly or Ala) have small, neutral side chains.</text>
            <dbReference type="EC" id="3.4.23.36"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="6">Protein modification; lipoprotein biosynthesis (signal peptide cleavage).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the peptidase A8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.23.36" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000182">
        <property type="protein sequence ID" value="KKO19529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19529">
        <property type="protein sequence ID" value="KKO19529"/>
        <property type="gene ID" value="BROFUL_01756"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2177"/>
    <dbReference type="UniPathway" id="UPA00665"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00161">
        <property type="entry name" value="LspA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001872">
        <property type="entry name" value="Peptidase_A8"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33695">
        <property type="entry name" value="PTHR33695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01252">
        <property type="entry name" value="Peptidase_A8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00781">
        <property type="entry name" value="LIPOSIGPTASE"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00077">
        <property type="entry name" value="lspA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="2 6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 6 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="63"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="87"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="125"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="158" mass="17492" checksum="A7C9832663CF6534" modified="2015-11-11" version="1">MKAITTFVVAAIGGAILDIVSKWIVFSQIDEFDKITLIPGLINLLHSKNEGVVFGMFPGKTNFFIIFSIIAIAVIIYIYLKSDKTPFASNLALGLVLAGAMGNLWDRIRYGYVRDFIDLHLGSKYHWPTFNIADSLICIGIACMVFTSISVSKTRTVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYG4</accession>
    <name>A0A0M2UYG4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta</fullName>
            <shortName evidence="13">ACCase subunit beta</shortName>
            <shortName evidence="13">Acetyl-CoA carboxylase carboxyltransferase subunit beta</shortName>
            <ecNumber evidence="13">2.1.3.15</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13 15" type="primary">accD</name>
        <name evidence="15" type="ORF">BROFUL_00153</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12 13">Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="13">
            <text>acetyl-CoA + N(6)-carboxybiotinyl-L-lysyl-[protein] = malonyl-CoA + N(6)-biotinyl-L-lysyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:54728"/>
            <dbReference type="Rhea" id="RHEA-COMP:10505"/>
            <dbReference type="Rhea" id="RHEA-COMP:10506"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:57384"/>
            <dbReference type="ChEBI" id="CHEBI:83144"/>
            <dbReference type="ChEBI" id="CHEBI:83145"/>
            <dbReference type="EC" id="2.1.3.15"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="13">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="13">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="13">Lipid metabolism; malonyl-CoA biosynthesis; malonyl-CoA from acetyl-CoA: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="13">Acetyl-CoA carboxylase is a heterohexamer composed of biotin carboxyl carrier protein (AccB), biotin carboxylase (AccC) and two subunits each of ACCase subunit alpha (AccA) and ACCase subunit beta (AccD).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 13">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="13">Belongs to the AccD/PCCB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.3.15" evidence="13"/>
    <dbReference type="EMBL" id="LAQJ01000017">
        <property type="protein sequence ID" value="KKO21108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21108">
        <property type="protein sequence ID" value="KKO21108"/>
        <property type="gene ID" value="BROFUL_00153"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.192"/>
    <dbReference type="UniPathway" id="UPA00655">
        <property type="reaction ID" value="UER00711"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009317">
        <property type="term" value="C:acetyl-CoA carboxylase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003989">
        <property type="term" value="F:acetyl-CoA carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016743">
        <property type="term" value="F:carboxyl- or carbamoyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:2001295">
        <property type="term" value="P:malonyl-CoA biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01395">
        <property type="entry name" value="AcetylCoA_CT_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034733">
        <property type="entry name" value="AcCoA_carboxyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000438">
        <property type="entry name" value="Acetyl_CoA_COase_Trfase_b_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011762">
        <property type="entry name" value="COA_CT_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041010">
        <property type="entry name" value="Znf-ACC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01039">
        <property type="entry name" value="Carboxyl_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17848">
        <property type="entry name" value="zf-ACC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01070">
        <property type="entry name" value="ACCCTRFRASEB"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00515">
        <property type="entry name" value="accD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50980">
        <property type="entry name" value="COA_CT_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 13" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="13" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="11 13" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="7 13" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="15" id="KW-0436">Ligase</keyword>
    <keyword evidence="2 13" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="10 13" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="4 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 13" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 13" id="KW-0808">Transferase</keyword>
    <keyword evidence="8 13" id="KW-0862">Zinc</keyword>
    <keyword evidence="6 13" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CoA carboxyltransferase N-terminal" evidence="14">
        <location>
            <begin position="14"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="C4-type" evidence="13">
        <location>
            <begin position="18"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="18"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="21"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="37"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="40"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00025280"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01395"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KKO21108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="270" mass="30020" checksum="35FF7EB1210E2F5B" modified="2015-11-11" version="1">MVFFRKKKDMPNGLWTRCNGCGSMVFKKTVEDGMFVCPECNYHFRIFCRDRLNLLVDENSFEEMWPNMVPCDPLNFKDRTTYPERVSEEQKKTGLKEAIIVGKGKINDKEVMIGITDPGFIMGSMGSVVGEKIARITEKAMELRLPLILISGSGGGARMQEGVFSLMQMAKTSAAIARFQDAGGLYISVLTDPSLGGVMASFASLADITIAEPKALIGFAGPRVIQETIKRALPKGFQTAEFLLEHGFLDMIVPRQDMKKELARLIAYLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYH4</accession>
    <name>A0A0M2UYH4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01235</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000135">
        <property type="protein sequence ID" value="KKO20036.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20036">
        <property type="protein sequence ID" value="KKO20036"/>
        <property type="gene ID" value="BROFUL_01235"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025943">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00158">
        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00676">
        <property type="entry name" value="SIGMA54_INTERACT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="5">
        <location>
            <begin position="155"/>
            <end position="384"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20036.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="481" mass="53889" checksum="ADE9598FB1CAB354" modified="2015-11-11" version="1">MKQGKLLLLDINPTSSLGQMLQGVLESSSGLNTPLHYESVKIEASDLLTSDLAGIAPRFYPDIILLISPHTLFHHASALLQSLRTKFMKTPVILVIDECPHEEILDLLKAGVTDFITPPLRPADIIPRIWRLLVQNTPTEILHQTLLEKVGLQHIIGKDPAFLAEIQKIPRVAKSDATVLISGETGTGKEVCARAIHYLSPRADKPFIPVNCGAIPTELLENELFGHKPGAFTSATSSQQGLIQEAAGGTLFLDEIDCLSLPAQVKLLRFLQEKEYRPLGSPKVCKADVRVIAASNAELKEAVRAERFRQDLYYRLNVIHLVLPPLRERRNDIPLLARHFLSQYADEYNKQAVEFSSDALQLLPLLDWHGNVRELEHVIERAVVLSDQRIIGKEDLALPSPETGVQAESFQEAKERIIAQFETAYIQCLLLAHHGNITKAAQAARKDRRAFWQLIRKHHINPENYRTKTHSITPSHPKEKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYR8</accession>
    <name>A0A0M2UYR8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">tRNA(Ile)-lysidine synthase</fullName>
            <ecNumber evidence="7">6.3.4.19</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">tRNA(Ile)-2-lysyl-cytidine synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">tRNA(Ile)-lysidine synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">tilS</name>
        <name evidence="9" type="ORF">BROFUL_01654</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>ATP + cytidine(34) in tRNA(Ile2) + L-lysine = AMP + diphosphate + H(+) + lysidine(34) in tRNA(Ile2)</text>
            <dbReference type="Rhea" id="RHEA:43744"/>
            <dbReference type="Rhea" id="RHEA-COMP:10625"/>
            <dbReference type="Rhea" id="RHEA-COMP:10670"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:32551"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:82748"/>
            <dbReference type="ChEBI" id="CHEBI:83665"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.4.19"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="7">The N-terminal region contains the highly conserved SGGXDS motif, predicted to be a P-loop motif involved in ATP binding.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the tRNA(Ile)-lysidine synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.19" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19619.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19619">
        <property type="protein sequence ID" value="KKO19619"/>
        <property type="gene ID" value="BROFUL_01654"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2042"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016879">
        <property type="term" value="F:ligase activity, forming carbon-nitrogen bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01992">
        <property type="entry name" value="PP-ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01161">
        <property type="entry name" value="tRNA_Ile_lys_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012796">
        <property type="entry name" value="Lysidine-tRNA-synth_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011063">
        <property type="entry name" value="TilS/TtcA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012094">
        <property type="entry name" value="tRNA_Ile_lys_synt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012795">
        <property type="entry name" value="tRNA_Ile_lys_synt_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43033">
        <property type="entry name" value="PTHR43033"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01171">
        <property type="entry name" value="ATP_bind_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11734">
        <property type="entry name" value="TilS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00977">
        <property type="entry name" value="TilS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02433">
        <property type="entry name" value="lysidine_TilS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02432">
        <property type="entry name" value="lysidine_TilS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 7" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="TilS_C" evidence="8">
        <location>
            <begin position="403"/>
            <end position="475"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="31"/>
            <end position="36"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19619.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="485" mass="55341" checksum="75EB0BFEF94A3F64" modified="2015-11-11" version="1">MHLDKLSYKIFHTITKYQLIKPHDAIIVGVSGGPDSVALIKILHALNSAKSLCLSLFLAHLNHQLRGKSSEEDAQFVQALSNELSLPFILKSVNIETIAIRTKRSIEETARRERYKFFLESAQGYNASAVVTGHTADDNTETILHRLIRGTGTLGLSGIPLKRPLATGSPIHLVRPLLFIWRKEIIEYLEEKRRSYRTDATNYKPVYLRNKIRLELIPSLENHYNPNIKNLLIQLSQILNLHNEFFVTEAKKILAVSPVEKKQDSCTINTRCLTQYPRVLQYFVLREILNTLQIPLNAITYDHYTKILDEISRKGKGRHFQLPGNLSLWHEHGMLHFQKALVSARSTPTSETLVQIPGITPVYPLGHLIAEISAMQNFSLETYKKQKPRNQETLDFHRITMPLSVRMRKDGDKISPLGTQGHKKLKDLFVDKKVPVKERDTIPIIVMNNQPVCALGICVDNKVKVTASTQKMIILTFHRHDEKTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYT8</accession>
    <name>A0A0M2UYT8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Glucokinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00487</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000066">
        <property type="protein sequence ID" value="KKO20785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20785">
        <property type="protein sequence ID" value="KKO20785"/>
        <property type="gene ID" value="BROFUL_00487"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.610"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000600">
        <property type="entry name" value="ROK"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18964">
        <property type="entry name" value="PTHR18964"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00480">
        <property type="entry name" value="ROK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01125">
        <property type="entry name" value="ROK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="304" mass="32509" checksum="6377A6C91F1D12B3" modified="2015-11-11" version="1">MSNCIVGIDLGGTNLKAGIVDTGGRILHRLSIKTNSSADPQTISNQILELIAETIRSAQIKESDVAGIGLGSPGLVDKTGETILFSPNLPRWRNIPIKRIVSERFSKPCVLENDANAAAWGEKWVGAGKEAKSLVMLTLGTGVGGGIVIDNKLWRGANNVAAEIGHMVIQTDGPPCKCGNRGCVEVYASATGMVRRFKELFDSGAPSSLKNSGEITARMINDAAIQGDKVSLDVIEETGRYLGIALINIMHVLNPEMIVLAGGMIGSGELLMNPISVLPRKGHLRHHIRIRRLCFRSLGTMRGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ54</accession>
    <name>A0A0M2UZ54_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Nucleotidyltransferase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01092</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20241.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20241">
        <property type="protein sequence ID" value="KKO20241"/>
        <property type="gene ID" value="BROFUL_01092"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041633">
        <property type="entry name" value="Polbeta"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18765">
        <property type="entry name" value="Polbeta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Polbeta" evidence="2">
        <location>
            <begin position="22"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18765"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20241.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="102" mass="11782" checksum="910ED5542E5A071E" modified="2015-11-11" version="1">MKKSKTDKESLVVLKETVVTLLKNEKVKIILFGSRARGDNYISSDVDIGIIPVGQFNEKPITLLREKIDNLNIPYKVEIVNLSEVSEEFRKEIMKDFIVWKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZA3</accession>
    <name>A0A0M2UZA3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_00138</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="6">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the peptidase M48 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000016">
        <property type="protein sequence ID" value="KKO21137.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21137">
        <property type="protein sequence ID" value="KKO21137"/>
        <property type="gene ID" value="BROFUL_00138"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.174"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001915">
        <property type="entry name" value="Peptidase_M48"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01435">
        <property type="entry name" value="Peptidase_M48"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 6" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="1 6" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4 6" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="57"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="99"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M48" evidence="8">
        <location>
            <begin position="6"/>
            <end position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO21137.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="198" mass="21278" checksum="1AA94AD7B5EFDDD7" modified="2015-11-11" version="1">MPKIYIIPTNAMNAFATGRNPRHAAVAVTEGMLNSLKREELKGVLGHELSHIRNRDILISTVVATIAGAVMLLADMARWAALFGGYGSRDDGENRGSGFAMLFLAIVAPLAALIIQMAISRSREYAADRGGALLTGNPAGLASALEKLQQSSVVRHMNANTATAHMFIVNPLSGRSFLSIFSTHPPIEERIKRLRAMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZE3</accession>
    <name>A0A0M2UZE3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Pyridoxal phosphate-dependent acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00074</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 3">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000008">
        <property type="protein sequence ID" value="KKO21192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21192">
        <property type="protein sequence ID" value="KKO21192"/>
        <property type="gene ID" value="BROFUL_00074"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.92"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001917">
        <property type="entry name" value="Aminotrans_II_pyridoxalP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010962">
        <property type="entry name" value="AONS_Archaea/Firmicutes"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01825">
        <property type="entry name" value="gly_Cac_T_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00599">
        <property type="entry name" value="AA_TRANSFER_CLASS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="4">
        <location>
            <begin position="41"/>
            <end position="382"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003693"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO21192.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="393" mass="42310" checksum="19F5F27DCAA7F250" modified="2015-11-11" version="1">MSMNKLDFVTEALEKLKDAGLLINIRTIEGPQGSWITVDGKKVFNLCSNNYLGFANNPQLKSAAQKAIEEYGVGPAAVRTIAGTTALHKELERKLALFKGAESAITFQSGFCANLAVIPAIVGEGDVVLSDELNHASIIDGCRLSRAKIIRYEHCNPADLQAKISDEKGACRMLIITDGVFSMEGDIAPLPEIVEIAEKFGAITMVDDAHGEGVLGRGGRGIVDHFNLHGKVDVEVGTLSKAFGVVGGYVAGSKRLTDYLAQRGRPFLFSSAVPAAGVAACIAGVDILTASDSLVKRLWDNTAFFQEKMKAAGFHLGNTKTPITPVFIGEVKIAQDFSQRLFEEGIFAQAIGYPTVPIGRARIRVMLSATHNRDDLTWATERFEKTGELLGIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZE8</accession>
    <name>A0A0M2UZE8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01418</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000146">
        <property type="protein sequence ID" value="KKO19859.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19859">
        <property type="protein sequence ID" value="KKO19859"/>
        <property type="gene ID" value="BROFUL_01418"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1750"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023155">
        <property type="entry name" value="Cyt_c-552/4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036280">
        <property type="entry name" value="Multihaem_cyt_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13435">
        <property type="entry name" value="Cytochrome_C554"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48695">
        <property type="entry name" value="SSF48695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cytochrome_C554" evidence="1">
        <location>
            <begin position="49"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome_C554" evidence="1">
        <location>
            <begin position="131"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19859.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="554" mass="62894" checksum="C5AF2E5C79DD4E1B" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZJ9</accession>
    <name>A0A0M2UZJ9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01370</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000141">
        <property type="protein sequence ID" value="KKO19919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19919">
        <property type="protein sequence ID" value="KKO19919"/>
        <property type="gene ID" value="BROFUL_01370"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019213">
        <property type="term" value="F:deacetylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071793">
        <property type="term" value="P:bacillithiol biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10320">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023842">
        <property type="entry name" value="Bacillithiol_biosynth_BshB1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003737">
        <property type="entry name" value="GlcNAc_PI_deacetylase-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024078">
        <property type="entry name" value="LmbE-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12993">
        <property type="entry name" value="PTHR12993"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02585">
        <property type="entry name" value="PIG-L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102588">
        <property type="entry name" value="SSF102588"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04001">
        <property type="entry name" value="thiol_BshB1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="230" mass="26420" checksum="1F2374182A8D7546" modified="2015-11-11" version="1">MTTILVIAPHPDDAEGGMGGSILKLVSLGYNVHILDLTNGEPTPHGNPEIRQKEWEQSTAMLGVKSRTVLDLPNRYLMDSIEARKKVAAMIRKICPQIIFLPYWVDAHPDHIQATQIGEAARFYAKLTKSDIPGEPCYPTHIFYYLCSHFRLHVTPTFILDISKEFEKKLQIARVYQSQFAYDDDRWKYISRSLIAKNQYYGNLIRVDYGEPFMSREQLGLTDIRDVLSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZM0</accession>
    <name>A0A0M2UZM0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Leucine--tRNA ligase</fullName>
            <ecNumber evidence="9">6.1.1.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Leucyl-tRNA synthetase</fullName>
            <shortName evidence="9">LeuRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">leuS</name>
        <name evidence="15" type="ORF">BROFUL_00836</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>ATP + L-leucine + tRNA(Leu) = AMP + diphosphate + L-leucyl-tRNA(Leu)</text>
            <dbReference type="Rhea" id="RHEA:11688"/>
            <dbReference type="Rhea" id="RHEA-COMP:9613"/>
            <dbReference type="Rhea" id="RHEA-COMP:9622"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57427"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78494"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.4"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9 10">Belongs to the class-I aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.4" evidence="9"/>
    <dbReference type="EMBL" id="LAQJ01000105">
        <property type="protein sequence ID" value="KKO20411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20411">
        <property type="protein sequence ID" value="KKO20411"/>
        <property type="gene ID" value="BROFUL_00836"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1057"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA editing activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004823">
        <property type="term" value="F:leucine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006429">
        <property type="term" value="P:leucyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00049_B">
        <property type="entry name" value="Leu_tRNA_synth_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002300">
        <property type="entry name" value="aa-tRNA-synth_Ia"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002302">
        <property type="entry name" value="Leu-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025709">
        <property type="entry name" value="Leu_tRNA-synth_edit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013155">
        <property type="entry name" value="M/V/L/I-tRNA-synth_anticd-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015413">
        <property type="entry name" value="Methionyl/Leucyl_tRNA_Synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009008">
        <property type="entry name" value="Val/Leu/Ile-tRNA-synth_edit"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43740">
        <property type="entry name" value="PTHR43740"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08264">
        <property type="entry name" value="Anticodon_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00133">
        <property type="entry name" value="tRNA-synt_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13603">
        <property type="entry name" value="tRNA-synt_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09334">
        <property type="entry name" value="tRNA-synt_1g"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00985">
        <property type="entry name" value="TRNASYNTHLEU"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="SSF47323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50677">
        <property type="entry name" value="SSF50677"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00396">
        <property type="entry name" value="leuS_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9 10" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="6 9 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 9 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 9 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 9 10" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="tRNA-synt_1g" evidence="13">
        <location>
            <begin position="41"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="domain" description="tRNA-synt_1_2" evidence="14">
        <location>
            <begin position="223"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="domain" description="tRNA-synt_1" evidence="11">
        <location>
            <begin position="422"/>
            <end position="622"/>
        </location>
    </feature>
    <feature type="domain" description="Anticodon_1" evidence="12">
        <location>
            <begin position="666"/>
            <end position="792"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="9">
        <location>
            <begin position="43"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="9">
        <location>
            <begin position="583"/>
            <end position="587"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="586"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU363035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF08264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF09334"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF13603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KKO20411.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="833" mass="95342" checksum="BF48F218F9B99AEE" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZP3</accession>
    <name>A0A0M2UZP3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Dihydroorotase</fullName>
            <shortName evidence="1">DHOase</shortName>
            <ecNumber evidence="1">3.5.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">pyrC</name>
        <name evidence="3" type="ORF">BROFUL_00861</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(S)-dihydroorotate + H2O = H(+) + N-carbamoyl-L-aspartate</text>
            <dbReference type="Rhea" id="RHEA:24296"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30864"/>
            <dbReference type="ChEBI" id="CHEBI:32814"/>
            <dbReference type="EC" id="3.5.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Binds 2 Zn(2+) ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 3/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.2.3" evidence="1"/>
    <dbReference type="EMBL" id="LAQJ01000105">
        <property type="protein sequence ID" value="KKO20436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20436">
        <property type="protein sequence ID" value="KKO20436"/>
        <property type="gene ID" value="BROFUL_00861"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1087"/>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00117"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004151">
        <property type="term" value="F:dihydroorotase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd01317">
        <property type="entry name" value="DHOase_IIa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00220_B">
        <property type="entry name" value="PyrC_classI_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004722">
        <property type="entry name" value="DHOase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01979">
        <property type="entry name" value="Amidohydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51338">
        <property type="entry name" value="SSF51338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="2">
        <location>
            <begin position="70"/>
            <end position="434"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="1">
        <location>
            <begin position="81"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="323"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="79"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="81"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="113"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="172"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="199"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="249"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="296"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="323"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="327"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00220"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="443" mass="48556" checksum="9D7FDF0C76BAD08E" modified="2015-11-11" version="1">MPFEGFFVIRNWSNKMTDTEVIIKGGHVIDPATGLDGRADILIKDGKISAISDDMKASAPARVIDARSKYVIPGLIDCHVHLREPGLEYKETIETGSRAAAKGGFTTLICEPNTIPPIDSLEMVAALMDRVRQKSVVNIFTKACITKGLLGEELTDIDKLATDKRVKALSDDGNPVFYEALIKRACELAARSNLIISPHCEDSQMSLDKAKENSRVAHFPGKPFCHETDFIMREIKYTEEARGWLHVSHVSFKKSLEVIQQAKERNLAKITCEVTPHHLLLDDTFRNEHGAVPKTNPPLRSPEDRQALQRGLAEGVIDVIATDHAPHTHDDIKKGSSGFVGLENALGVIVTKLVHPGILSLKEIVRKMSTNPARIFNVAGGSLAVGMPADIAILDMNKTWTVAVDKFVSKARNCPFHGWNLTGQVTTTLVGGKIIVDHGNMVC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZR3</accession>
    <name>A0A0M2UZR3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">GspH domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_01253</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Single-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO19984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19984">
        <property type="protein sequence ID" value="KKO19984"/>
        <property type="gene ID" value="BROFUL_01253"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015627">
        <property type="term" value="C:type II protein secretion system complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015628">
        <property type="term" value="P:protein secretion by the type II secretion system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012902">
        <property type="entry name" value="N_methyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045584">
        <property type="entry name" value="Pilin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022346">
        <property type="entry name" value="T2SS_GspH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12019">
        <property type="entry name" value="GspH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07963">
        <property type="entry name" value="N_methyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54523">
        <property type="entry name" value="SSF54523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02532">
        <property type="entry name" value="IV_pilin_GFxxxE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00409">
        <property type="entry name" value="PROKAR_NTER_METHYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0488">Methylation</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="domain" description="GspH" evidence="10">
        <location>
            <begin position="42"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004377"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF12019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO19984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="149" mass="16728" checksum="99CC73DC3E153D36" modified="2015-11-11" version="1">MNSQKGFSLLEMIIVLAIISVLAGTTISVYITMKPVLRLSGATRQIMGDLMWARMQAISQNNEFKIIYNNNHQYSILDDDNNNGIRDNDESLIKKNLHDKYDDVTYSSSNINNLIFFPRGNATNLTTITLTNISGIRTVSVAITGRVKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZY4</accession>
    <name>A0A0M2UZY4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative nitroreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00116</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000015">
        <property type="protein sequence ID" value="KKO21155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21155">
        <property type="protein sequence ID" value="KKO21155"/>
        <property type="gene ID" value="BROFUL_00116"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.109.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029479">
        <property type="entry name" value="Nitroreductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000415">
        <property type="entry name" value="Nitroreductase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029478">
        <property type="entry name" value="TM1586_NiRdase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00881">
        <property type="entry name" value="Nitroreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14512">
        <property type="entry name" value="TM1586_NiRdase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55469">
        <property type="entry name" value="SSF55469"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nitroreductase" evidence="1">
        <location>
            <begin position="8"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="domain" description="TM1586_NiRdase" evidence="2">
        <location>
            <begin position="101"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO21155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="167" mass="18804" checksum="CC3DB951D4433883" modified="2015-11-11" version="1">MDIYEIMKFRRSVRSYKSEPVEEGKLRRILEAALSAPSAANRQPIHFVVIKDEKIRHQLKTAYNATWFYTAPVIICVCSIPEKGWKRSDGKNYADIDATIAMDHLVLAATSEGLATCWVAAFKVSDVKSILNLPPGMEPLALTPLGYSLDYPEPTHRKTLEEIVQII</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V038</accession>
    <name>A0A0M2V038_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">UPF0060 membrane protein BROFUL_00059</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_00059</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the UPF0060 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000007">
        <property type="protein sequence ID" value="KKO21220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21220">
        <property type="protein sequence ID" value="KKO21220"/>
        <property type="gene ID" value="BROFUL_00059"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.74"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00010">
        <property type="entry name" value="UPF0060"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003844">
        <property type="entry name" value="UPF0060"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36116">
        <property type="entry name" value="PTHR36116"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02694">
        <property type="entry name" value="UPF0060"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="37"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="62"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="93"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO21220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="112" mass="12498" checksum="FF9BFB5BA1DC96D1" modified="2015-11-11" version="1">MERVEIVRSIFFFILAGLCEIGGGYLIWLWLREGKSIWLGLSGAIALVIYGVIPTFQPANFGRVYAAYGGIFIVLSILWGWKIDKIAPDKFDLIGGFIALVGVVIIMYWPRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0F4</accession>
    <name>A0A0M2V0F4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01042</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20194">
        <property type="protein sequence ID" value="KKO20194"/>
        <property type="gene ID" value="BROFUL_01042"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1304"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019271">
        <property type="entry name" value="DUF2284_metal-binding"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10050">
        <property type="entry name" value="DUF2284"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="188" mass="21238" checksum="D1F909DD385550D4" modified="2015-11-11" version="1">MHTPDSVMPEFQMAMTPHQNLADVCNVLIKKAIELGCVQAAVIHTNTISVARWVQLKCKYGCEAYGKKLTCPPHSPSFEEMKEILREYTRALLLRGHLSWQMRYITAEIEKMAFSLGFYKAFGLGAGPCKLCEDCDTSHACVRTTEARPSMEACGIDVYQTVRNHNFKIETLKSKDDEVNIYGLILLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0J6</accession>
    <name>A0A0M2V0J6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01069</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20219.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20219">
        <property type="protein sequence ID" value="KKO20219"/>
        <property type="gene ID" value="BROFUL_01069"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1334"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011856">
        <property type="entry name" value="tRNA_endonuc-like_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20219.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="144" mass="16653" checksum="6021CA42D701DAAB" modified="2015-11-11" version="1">MSNPKPRKKKRKSGIPTGNAGEYFVMGELLRRGFDAQLADRNTKNYDILVGLPSDKVLKKLQVKTVRSAPWYVKTASYSDDLAAQLTIFVLLGDEKAQKQVRYFITRNNEVARHVHHPQNWKNNGFMPLNAIKEYEDRWEIFAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1A7</accession>
    <name>A0A0M2V1A7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00331</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000041">
        <property type="protein sequence ID" value="KKO20941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20941">
        <property type="protein sequence ID" value="KKO20941"/>
        <property type="gene ID" value="BROFUL_00331"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.407"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006558">
        <property type="entry name" value="LamG-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010620">
        <property type="entry name" value="SBBP_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06739">
        <property type="entry name" value="SBBP"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SMART" id="SM00560">
        <property type="entry name" value="LamGL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="SSF49899"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="LamGL" evidence="3">
        <location>
            <begin position="821"/>
            <end position="971"/>
        </location>
    </feature>
    <feature type="domain" description="LamGL" evidence="3">
        <location>
            <begin position="1042"/>
            <end position="1192"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="71"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="740"/>
            <end position="760"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="75"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="742"/>
            <end position="760"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1200" mass="127113" checksum="E37F047911F06C8E" modified="2015-11-11" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1F0</accession>
    <name>A0A0M2V1F0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Kinesin light chain KLC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00306</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000035">
        <property type="protein sequence ID" value="KKO20971.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20971">
        <property type="protein sequence ID" value="KKO20971"/>
        <property type="gene ID" value="BROFUL_00306"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.374"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20971.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="509" mass="56769" checksum="2F9022756D57A93C" modified="2015-11-11" version="1">MGEEREAEHIRQISDFAVSFGIFVKDRSPEEIEAGLARELERRGLPYLWIADDVPSGMEREALHKWLAPHPSGKTLITTRTREYNALGTLIPLGVLAPEEAYELLTLRRKPAGKTEEDAARMLTEDLGYHALAVDVAGALLDAKKGLESFAEFRKKLVDTQRDELEYASKLKEILPTGHEKSIASTLLRSIRQLEPEGLDFLRLASVLAVAPIPASLVSAVFSKADNLDEEAGKHRAMFAFDQVENLSLAEGSDEESGAKTVHTLVSRTVRFHETMPDRIDLIQAAAVSVLTDGLSVIADGRIHSELKLEVAHARQLVNRGDDIPTANITGWLAGYDHLYGAYRSAEMLLRRELDIRNRILGDVHPHTLRTMNNIAETLRAQGDLASAHKLNEQVLEIKRKILGDEHPDTLMTMNNLAEMLSDQGDLAVARKLEEQVLEKRRRILGDEHPDTSLSAWNLVVTLLHIGDAAEAMEILSKHLLWLLSRDPATLEANQQKIREMIIESIPKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1V1</accession>
    <name>A0A0M2V1V1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00146</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000017">
        <property type="protein sequence ID" value="KKO21101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21101">
        <property type="protein sequence ID" value="KKO21101"/>
        <property type="gene ID" value="BROFUL_00146"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="46" mass="5068" checksum="E218D2A668DECBF1" modified="2015-11-11" version="1">MSTLHGSGAYAQLLKTLCIEVKLSYKVVVFLAIEGIVESFPSRPRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1V5</accession>
    <name>A0A0M2V1V5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 10 11">Ribulose-phosphate 3-epimerase</fullName>
            <ecNumber evidence="7 10 11">5.1.3.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">rpe</name>
        <name evidence="15" type="ORF">BROFUL_00151</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10 11">
            <text>D-ribulose 5-phosphate = D-xylulose 5-phosphate</text>
            <dbReference type="Rhea" id="RHEA:13677"/>
            <dbReference type="ChEBI" id="CHEBI:57737"/>
            <dbReference type="ChEBI" id="CHEBI:58121"/>
            <dbReference type="EC" id="5.1.3.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10 13">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
        <text evidence="10 13">Binds 1 divalent metal cation per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="10">Carbohydrate degradation.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6 10 11">Belongs to the ribulose-phosphate 3-epimerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.1.3.1" evidence="7 10 11"/>
    <dbReference type="EMBL" id="LAQJ01000017">
        <property type="protein sequence ID" value="KKO21106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21106">
        <property type="protein sequence ID" value="KKO21106"/>
        <property type="gene ID" value="BROFUL_00151"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.189"/>
    <dbReference type="UniPathway" id="UPA00703">
        <property type="reaction ID" value="UER00720"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004750">
        <property type="term" value="F:D-ribulose-phosphate 3-epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019323">
        <property type="term" value="P:pentose catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006098">
        <property type="term" value="P:pentose-phosphate shunt"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00429">
        <property type="entry name" value="RPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02227">
        <property type="entry name" value="RPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026019">
        <property type="entry name" value="Ribul_P_3_epim"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000056">
        <property type="entry name" value="Ribul_P_3_epim-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11749">
        <property type="entry name" value="PTHR11749"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00834">
        <property type="entry name" value="Ribul_P_3_epim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001461">
        <property type="entry name" value="RPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="SSF51366"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01163">
        <property type="entry name" value="rpe"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01085">
        <property type="entry name" value="RIBUL_P_3_EPIMER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01086">
        <property type="entry name" value="RIBUL_P_3_EPIMER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="13" id="KW-0170">Cobalt</keyword>
    <keyword evidence="9 10 11" id="KW-0413">Isomerase</keyword>
    <keyword evidence="13" id="KW-0464">Manganese</keyword>
    <keyword evidence="8 10 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="13" id="KW-0862">Zinc</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="10 14">
        <location>
            <begin position="146"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10">
        <location>
            <begin position="176"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10 14">
        <location>
            <begin position="198"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="10 12">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="10 12">
        <location>
            <position position="176"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10 14">
        <location>
            <position position="10"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10 13">
        <location>
            <position position="35"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10 13">
        <location>
            <position position="37"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10 13 14">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10 13">
        <location>
            <position position="176"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="178"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00001954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00009541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00013188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRNR" id="PIRNR001461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR001461-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR001461-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRSR" id="PIRSR001461-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KKO21106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="232" mass="24839" checksum="EDCFA5D3C8F23497" modified="2015-11-11" version="1">MQPGIKIAASILGANPVRLEEEIKKIEQAGIDLIHIDVMDGHFVPNITMGPFIVEGIRRITNVPLDMHLMIENPERYITPFAAAARAGDLITFHIEAAKKPKEIISFITSAGLKAGVSLNPDTGTETVEDLLDELDMVLVMSVNPGFAGQRFIPKALPKIARLRGIAPEKMDIEVDGGITTETISQAVAHGANVIVAASAIFKATDPCSAIKALRQTAEQAVKKGDTQKAIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1Z7</accession>
    <name>A0A0M2V1Z7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">Carbamoyl-phosphate synthase large chain</fullName>
            <ecNumber evidence="13">6.3.5.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">Carbamoyl-phosphate synthetase ammonia chain</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">carB</name>
        <name evidence="17" type="ORF">BROFUL_00112</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 13">
            <text>2 ATP + H2O + hydrogencarbonate + L-glutamine = 2 ADP + carbamoyl phosphate + 2 H(+) + L-glutamate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:18633"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.5.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="13">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="13">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="13">Binds 4 Mg(2+) or Mn(2+) ions per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="13">Amino-acid biosynthesis; L-arginine biosynthesis; carbamoyl phosphate from bicarbonate: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 13">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 1/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="13">Composed of two chains; the small (or glutamine) chain promotes the hydrolysis of glutamine to ammonia, which is used by the large (or ammonia) chain to synthesize carbamoyl phosphate.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 13">Belongs to the CarB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.5" evidence="13"/>
    <dbReference type="EMBL" id="LAQJ01000015">
        <property type="protein sequence ID" value="KKO21151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21151">
        <property type="protein sequence ID" value="KKO21151"/>
        <property type="gene ID" value="BROFUL_00112"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.142"/>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00171"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00115"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004088">
        <property type="term" value="F:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01424">
        <property type="entry name" value="MGS_CPS_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1030.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01210_A">
        <property type="entry name" value="CPSase_L_chain_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01210_B">
        <property type="entry name" value="CPSase_L_chain_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006275">
        <property type="entry name" value="CarbamoylP_synth_lsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005480">
        <property type="entry name" value="CarbamoylP_synth_lsu_oligo"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036897">
        <property type="entry name" value="CarbamoylP_synth_lsu_oligo_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005479">
        <property type="entry name" value="CbamoylP_synth_lsu-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005483">
        <property type="entry name" value="CbamoylP_synth_lsu_CPSase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011607">
        <property type="entry name" value="MGS-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036914">
        <property type="entry name" value="MGS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033937">
        <property type="entry name" value="MGS_CPS_CarB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02786">
        <property type="entry name" value="CPSase_L_D2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02787">
        <property type="entry name" value="CPSase_L_D3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02142">
        <property type="entry name" value="MGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00098">
        <property type="entry name" value="CPSASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01096">
        <property type="entry name" value="CPSase_L_D3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00851">
        <property type="entry name" value="MGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48108">
        <property type="entry name" value="SSF48108"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52335">
        <property type="entry name" value="SSF52335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01369">
        <property type="entry name" value="CPSaseII_lrg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00866">
        <property type="entry name" value="CPSASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00867">
        <property type="entry name" value="CPSASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51855">
        <property type="entry name" value="MGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="13" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="9 13 14" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 13" id="KW-0436">Ligase</keyword>
    <keyword evidence="10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="12" id="KW-0464">Manganese</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 13 14" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11 13" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 13" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="ATP-grasp" evidence="15">
        <location>
            <begin position="133"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-grasp" evidence="15">
        <location>
            <begin position="699"/>
            <end position="890"/>
        </location>
    </feature>
    <feature type="domain" description="MGS-like" evidence="16">
        <location>
            <begin position="957"/>
            <end position="1093"/>
        </location>
    </feature>
    <feature type="region of interest" description="Carboxyphosphate synthetic domain" evidence="13">
        <location>
            <begin position="1"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="region of interest" description="Allosteric domain" evidence="13">
        <location>
            <begin position="957"/>
            <end position="1093"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="285"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="299"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="301"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="849"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="861"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="863"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>4</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004812"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009799"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS51855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="KKO21151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1093" mass="120372" checksum="832D7D817C12AE9A" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V230</accession>
    <name>A0A0M2V230_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00518</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000071">
        <property type="protein sequence ID" value="KKO20759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20759">
        <property type="protein sequence ID" value="KKO20759"/>
        <property type="gene ID" value="BROFUL_00518"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="22"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="63"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="113"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="137"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="167"/>
            <end position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="303" mass="35182" checksum="12A1E624A3CAC8D9" modified="2015-11-11" version="1">MLDFIGYCLSINTKIENWPIDVSLFSVGFLSLSVVYDYGYFTYLGFSFSEAPTTISDHVRSSLVWLPTLTIAVLAIFIYESAMKRLEGGMSEEELITTSPTPKFTKWFRASPAYLIIIIAVAIPILWFAGIKPPLRAQQFSLIIFWFLFHNWVYSHPNIVSKTSLKIYLIGRWLPAIVIYIAYTGAISAENTIELHKNNYKLVLSNSTIEVNLLRTFQSYFLVWNSSKHNYEFISSALIKSYEPVDKPEQNKKSNKHIHRRQKAARLISDVNLKRACARKMTLRTFIKRRLDLKPYPERIRFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V232</accession>
    <name>A0A0M2V232_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00507</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000070">
        <property type="protein sequence ID" value="KKO20764.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20764">
        <property type="protein sequence ID" value="KKO20764"/>
        <property type="gene ID" value="BROFUL_00507"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20764.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="106" mass="12253" checksum="3D0C420A47A5DEF4" modified="2015-11-11" version="1">MQSDKNEFDDALKSYKEALEIYRKLALANPQTYLPDVAMTLINLSILYQKSRPDKEVSVQFAMEALTIVIPFLEKAPYTQQYALRALQVLRNWGVDIEKILAEEDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V248</accession>
    <name>A0A0M2V248_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PI3K/PI4K catalytic domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00050</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000007">
        <property type="protein sequence ID" value="KKO21211.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21211">
        <property type="protein sequence ID" value="KKO21211"/>
        <property type="gene ID" value="BROFUL_00050"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1070.11">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000403">
        <property type="entry name" value="PI3/4_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036940">
        <property type="entry name" value="PI3/4_kinase_cat_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00454">
        <property type="entry name" value="PI3_PI4_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50290">
        <property type="entry name" value="PI3_4_KINASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PI3K/PI4K catalytic" evidence="1">
        <location>
            <begin position="134"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50290"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21211.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="270" mass="31520" checksum="438FE1F6018AC0C6" modified="2015-11-11" version="1">MIEKSIFEKGVKEGIFGSIKDREIDHIEYDRWMGGPRGPEKIIFKDGSAVIFKCDIRHYWMADNPDTAIREAIVYQIDKIVGLGLVPKTMVIDDMIGNVQYDGSVQDWIKNAKDGYQIERFTDEERKDYERLRVFDFIIGNSDRHLGNVLFTDDGRVYAIDHNASLIISSDDDILSFPDAVVLFFSKNVVHDMPHIVEIIEKFHANKDKILDLINTYVQDNTEMAKLMVESRINYLYTMLKKDKPFPRKYREWRNALNEEISCILRRNKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2N0</accession>
    <name>A0A0M2V2N0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00317</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000038">
        <property type="protein sequence ID" value="KKO20954.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20954">
        <property type="protein sequence ID" value="KKO20954"/>
        <property type="gene ID" value="BROFUL_00317"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20954.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="48" mass="5550" checksum="A0FE4C27E986D991" modified="2015-11-11" version="1">MRGSAGGEAKAAIVIHLIICILMKRYTIMYDNRSEYKREVAVRMTLFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2R4</accession>
    <name>A0A0M2V2R4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Chaperone protein HtpG</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Heat shock protein HtpG</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">High temperature protein G</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">htpG</name>
        <name evidence="7" type="ORF">BROFUL_00284</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Molecular chaperone. Has ATPase activity.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the heat shock protein 90 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000033">
        <property type="protein sequence ID" value="KKO20984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20984">
        <property type="protein sequence ID" value="KKO20984"/>
        <property type="gene ID" value="BROFUL_00284"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.346"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00505">
        <property type="entry name" value="HSP90"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019805">
        <property type="entry name" value="Heat_shock_protein_90_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037196">
        <property type="entry name" value="HSP90_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001404">
        <property type="entry name" value="Hsp90_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020575">
        <property type="entry name" value="Hsp90_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11528">
        <property type="entry name" value="PTHR11528"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00183">
        <property type="entry name" value="HSP90"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002583">
        <property type="entry name" value="Hsp90"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00775">
        <property type="entry name" value="HEATSHOCK90"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110942">
        <property type="entry name" value="SSF110942"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00298">
        <property type="entry name" value="HSP90"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 5" id="KW-0143">Chaperone</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="HATPase_c" evidence="6">
        <location>
            <begin position="31"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="region of interest" description="A; substrate-binding" evidence="5">
        <location>
            <begin position="1"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="region of interest" description="C" evidence="5">
        <location>
            <begin position="548"/>
            <end position="636"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="636" mass="73581" checksum="17051A42DA4323BB" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UP12</accession>
    <name>A0A0M2UP12_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative iron sulfur protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_03426</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000313">
        <property type="protein sequence ID" value="KKO17878.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17878">
        <property type="protein sequence ID" value="KKO17878"/>
        <property type="gene ID" value="BROFUL_03426"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1060.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004017">
        <property type="entry name" value="Cys_rich_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009051">
        <property type="entry name" value="Helical_ferredxn"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02754">
        <property type="entry name" value="CCG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13183">
        <property type="entry name" value="Fer4_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="3"/>
            <end position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO17878.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="319" mass="36464" checksum="3A904735465EE4DA" modified="2015-11-11" version="1">MNTKAWRDEINKCAKCGKCRSICPVFIETGNESMVARGRISLAEALRNGEIFHTELLRDYLLSCKKCLRCSSICPSGVDYDIIIQTMLDDLAKHLGIWLIPRIVFRLFLTRRWLFNLLLKTASIFQRLVPLKRRGTMRHLPFMLMGGRWIPPLAKKSVLRNHRNTKKIKDPKMKVGFYVGCLINYVYTDIADAVIEVLNHLGVEVVVPSKQLCCGIPARSLGDAKTARRLAEANVEVFEKANVDFIINACATCGRTLKRDYLHILGDRALPFTNKIYDVSEFIEKYFHMKQRHSARRLPTMTLVISTGVKIYQSNPGIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UP61</accession>
    <name>A0A0M2UP61_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase</fullName>
            <ecNumber evidence="2">2.7.6.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">folK</name>
        <name evidence="9" type="ORF">BROFUL_03374</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; tetrahydrofolate biosynthesis; 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 7,8-dihydroneopterin triphosphate: step 4/4.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.6.3" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17923">
        <property type="protein sequence ID" value="KKO17923"/>
        <property type="gene ID" value="BROFUL_03374"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4150"/>
    <dbReference type="UniPathway" id="UPA00077">
        <property type="reaction ID" value="UER00155"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003848">
        <property type="term" value="F:2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046656">
        <property type="term" value="P:folic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046654">
        <property type="term" value="P:tetrahydrofolate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00483">
        <property type="entry name" value="HPPK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.560">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000550">
        <property type="entry name" value="Hppk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035907">
        <property type="entry name" value="Hppk_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01288">
        <property type="entry name" value="HPPK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55083">
        <property type="entry name" value="SSF55083"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01498">
        <property type="entry name" value="folK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00794">
        <property type="entry name" value="HPPK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0289">Folate biosynthesis</keyword>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HPPK" evidence="8">
        <location>
            <begin position="124"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005051"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013253"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS00794"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO17923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="195" mass="22116" checksum="2820B486F7258E89" modified="2015-11-11" version="1">MYARSAEAAHVLRISVQHKSSQRILKFVSKNRLKTLMIPVYVGLGSNMGNREGNLRTACKHIRATQGIQPVSCSLFYETAPVGGPRQPMFLNAVLGINTLLSPHQLLERFQHIEALMGRIRTVKWGPRTIDIDILLYGDEIIDDDRLTIPHPLMHTRLFVLEPLVEIAPNAVHPRLQKTMYQLYQELQTSLSVIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UP91</accession>
    <name>A0A0M2UP91_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03399</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17948.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17948">
        <property type="protein sequence ID" value="KKO17948"/>
        <property type="gene ID" value="BROFUL_03399"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17948.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="88" mass="9978" checksum="F0E1E0F2FD64F39C" modified="2015-11-11" version="1">MEMLGQLLVLGITGKKIISKNPVLIDNQDALHMILAGEMDDCRLTIDSYIVRIGDKVYDLVCWAPSGSFNQIQADFEDMVRSFHYIKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPR5</accession>
    <name>A0A0M2UPR5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Pyridoxal phosphate homeostasis protein</fullName>
            <shortName evidence="1">PLP homeostasis protein</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_03435</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000313">
        <property type="protein sequence ID" value="KKO17887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17887">
        <property type="protein sequence ID" value="KKO17887"/>
        <property type="gene ID" value="BROFUL_03435"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4217"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02087">
        <property type="entry name" value="PLP_homeostasis"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001608">
        <property type="entry name" value="Ala_racemase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029066">
        <property type="entry name" value="PLP-binding_barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011078">
        <property type="entry name" value="PyrdxlP_homeostasis"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10146">
        <property type="entry name" value="PTHR10146"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01168">
        <property type="entry name" value="Ala_racemase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004848">
        <property type="entry name" value="YBL036c_PLPDEIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51419">
        <property type="entry name" value="SSF51419"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00044">
        <property type="entry name" value="TIGR00044"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01211">
        <property type="entry name" value="UPF0001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ala_racemase_N" evidence="4">
        <location>
            <begin position="6"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="1 2">
        <location>
            <position position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR004848-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU004514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO17887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="249" mass="28263" checksum="0E7655C49A6FEE77" modified="2015-11-11" version="1">MSIKENLEQVRQNIANTARKAGKRPEDITLVMATKTVEPERIRQAIRAGGNIIGENKVQEALKKYEVLKDEDAEWHFIGHLQTNKVKDVLKFADMIHSVDRLSLVEKLDQRLQQEGRSLDILIQINTSHEESKYGVAPEDAVSLVKQTAKYDTFRVLGLMTIGLFTKDEIKIRQCFKVLKGIHDTLINEAINRVQMKYLSMGMSGDYQIAIEEGANMVRIGTAIFGARNTPDAYYWPSEKTDADRARQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPS7</accession>
    <name>A0A0M2UPS7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Serine hydroxymethyltransferase</fullName>
            <shortName evidence="7">SHMT</shortName>
            <shortName evidence="7">Serine methylase</shortName>
            <ecNumber evidence="7">2.1.2.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">glyA</name>
        <name evidence="10" type="ORF">BROFUL_03413</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + glycine + H2O = (6S)-5,6,7,8-tetrahydrofolate + L-serine</text>
            <dbReference type="Rhea" id="RHEA:15481"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="EC" id="2.1.2.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 7 8">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Amino-acid biosynthesis; glycine biosynthesis; glycine from L-serine: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7">One-carbon metabolism; tetrahydrofolate interconversion.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the SHMT family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.1" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000312">
        <property type="protein sequence ID" value="KKO17902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17902">
        <property type="protein sequence ID" value="KKO17902"/>
        <property type="gene ID" value="BROFUL_03413"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4191"/>
    <dbReference type="UniPathway" id="UPA00193"/>
    <dbReference type="UniPathway" id="UPA00288">
        <property type="reaction ID" value="UER01023"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004372">
        <property type="term" value="F:glycine hydroxymethyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019264">
        <property type="term" value="P:glycine biosynthetic process from serine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035999">
        <property type="term" value="P:tetrahydrofolate interconversion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00378">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00051">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001085">
        <property type="entry name" value="Ser_HO-MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019798">
        <property type="entry name" value="Ser_HO-MeTrfase_PLP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039429">
        <property type="entry name" value="SHMT-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11680">
        <property type="entry name" value="PTHR11680"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00464">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000412">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00096">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4 7" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="6 7 8" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SHMT" evidence="9">
        <location>
            <begin position="4"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="121"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="31"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="51"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="53"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="61"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="95"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="117"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="172"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="200"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="225"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="232"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="359"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="7 8">
        <location>
            <position position="226"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006376"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00051"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000412-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO17902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="421" mass="46280" checksum="2055A312D8AEFDCB" modified="2015-11-11" version="1">MIRLENDDPEVWQAIQKETERQQNTIDLIASENICSPAVQEAQGSSMTNKYAEGYAGRRWYAGCGYVDTVENLAVERAKKIFGAEHANVQPNAGSQANMAVCFSVLKPGDRILGMDLSHGGHLTHGFKKNFSGMMYDITHYGVKKETGYIDYDEVHAIALKTKPHMIIAGASAYPRILDFPRFRKIADEVGAYLMADIAHIAGLVAGGVHPSPVPYADFVTTTTHKTLRGPRGGMILCKQKYAKQIDSMVFPGIQGGPFMHIIAAKAVAFKEAMTEEFKQCQRQTVQNAKAMAQEFVKRGYSIVSGGTDNHLFLIDLRNKNITGKEAQMLLETTDIILNRNTIPFDEKGASANEPNGIRIGTPTVTSRGMKEAAVIRIADCIDKALSQPNDSQTKEAVRKAVRELCAAHPLYEIEACQKAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ28</accession>
    <name>A0A0M2UQ28_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03091</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000286">
        <property type="protein sequence ID" value="KKO18193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18193">
        <property type="protein sequence ID" value="KKO18193"/>
        <property type="gene ID" value="BROFUL_03091"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="66" mass="7217" checksum="AB2E4BA95BD3DE9D" modified="2015-11-11" version="1">MLSKIRGIYSSLSDNKIVVGAKHLPCQEPERKLNGVANASPLPVRILSLLQNPQPIPEQKLNSADE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQF1</accession>
    <name>A0A0M2UQF1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 12">Aspartate-semialdehyde dehydrogenase</fullName>
            <shortName evidence="12">ASA dehydrogenase</shortName>
            <shortName evidence="12">ASADH</shortName>
            <ecNumber evidence="7 12">1.2.1.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12">Aspartate-beta-semialdehyde dehydrogenase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="primary">asd</name>
        <name evidence="14" type="ORF">BROFUL_03433</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 12">
            <text>L-aspartate 4-semialdehyde + NADP(+) + phosphate = 4-phospho-L-aspartate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:24284"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57535"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:537519"/>
            <dbReference type="EC" id="1.2.1.11"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 12">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 2/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 12">Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-homoserine from L-aspartate: step 2/3.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4 12">Amino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 2/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6 12">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 12">Belongs to the aspartate-semialdehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.11" evidence="7 12"/>
    <dbReference type="EMBL" id="LAQJ01000313">
        <property type="protein sequence ID" value="KKO17885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17885">
        <property type="protein sequence ID" value="KKO17885"/>
        <property type="gene ID" value="BROFUL_03433"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4215"/>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00016"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00050">
        <property type="reaction ID" value="UER00463"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00051">
        <property type="reaction ID" value="UER00464"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004073">
        <property type="term" value="F:aspartate-semialdehyde dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071266">
        <property type="term" value="P:'de novo' L-methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019877">
        <property type="term" value="P:diaminopimelate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009088">
        <property type="term" value="P:threonine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02121">
        <property type="entry name" value="ASADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012080">
        <property type="entry name" value="Asp_semialdehyde_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005986">
        <property type="entry name" value="Asp_semialdehyde_DH_beta"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000534">
        <property type="entry name" value="Semialdehyde_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012280">
        <property type="entry name" value="Semialdhyde_DH_dimer_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01118">
        <property type="entry name" value="Semialdhyde_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02774">
        <property type="entry name" value="Semialdhyde_dhC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00859">
        <property type="entry name" value="Semialdhyde_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01296">
        <property type="entry name" value="asd_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9 12" id="KW-0220">Diaminopimelate biosynthesis</keyword>
    <keyword evidence="10 12" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="11 12" id="KW-0486">Methionine biosynthesis</keyword>
    <keyword evidence="12" id="KW-0521">NADP</keyword>
    <keyword evidence="12" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 12" id="KW-0791">Threonine biosynthesis</keyword>
    <feature type="domain" description="Semialdhyde_dh" evidence="13">
        <location>
            <begin position="4"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="12">
        <location>
            <position position="128"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="12">
        <location>
            <position position="245"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <begin position="11"/>
            <end position="14"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <begin position="39"/>
            <end position="40"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="99"/>
        </location>
        <ligand>
            <name>phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="155"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <begin position="158"/>
            <end position="159"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="238"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="318"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005021"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00010584"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00013120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="SMART" id="SM00859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KKO17885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="335" mass="36386" checksum="362AE851EF657C9C" modified="2015-11-11" version="1">MAVNVAVVGATGAVGEEFLRILESRKFPVKELRLLASKRSAGKKMRFCGRDYTVQELTKHSFEGIKIALFSAGASISREYVPYAIASGAVCVDNSSAFRMDDDVPLVVPEVNPQDIAKHHGVIANPNCSTIQMVVALKPIHDAARIKRIVVSTYQAVSGAGLKAIDELQKETASILSGQEGFRRNLFPHQIAFNVLPQIPQNNAFLPNGYTSEEMKMVSETKKILGDNSVRVTATTVRVPVIRSHSESINIETEKKISAAAVKKLLSTAPGVQVADDPANQLYPLATMATGRDEVFVGRIREDESLDHGINLWVVSDNVRKGAALNAIQIAEKLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQG5</accession>
    <name>A0A0M2UQG5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pleiotrophic regulatory protein DegT</fullName>
            <ecNumber evidence="4">2.6.1.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">degT</name>
        <name evidence="4" type="ORF">BROFUL_03214</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the DegT/DnrJ/EryC1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.-" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000293">
        <property type="protein sequence ID" value="KKO18112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18112">
        <property type="protein sequence ID" value="KKO18112"/>
        <property type="gene ID" value="BROFUL_03214"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3960"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00616">
        <property type="entry name" value="AHBA_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000653">
        <property type="entry name" value="DegT/StrS_aminotransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30244">
        <property type="entry name" value="PTHR30244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01041">
        <property type="entry name" value="DegT_DnrJ_EryC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000390">
        <property type="entry name" value="PLP_StrS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="2 3" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="185"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="2">
        <location>
            <position position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR000390-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000390-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU004508"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="365" mass="40489" checksum="5690235B245A4455" modified="2015-11-11" version="1">MILMNNFQAEPAELIQQEVAAVEKVIKSGWYILGNQVSNFESAWASHCRVNYAIGVGNGMDAIEIGLRALKIGSGDEVITTPMTAFATVLAIIRAGAIPVLADIEPATALLDPASVERCLSSRTRAVLLVHLYGQVRNMDSWITLCNHAGIQLLEDCAQSHLAFWKNKVAGAFGAWGAYSFYPTKNLGTLGDGGAIITNSEALANQAKILRNYGQSQRYHHSELGLNSRLDEMHAAILTARLGWFDFFSARRKEIAKAYFDGIKNPLVHLMAEPVESKCHVYHLFVILCDKRDRLSNYLVEHGVDNLIHYPIPVHHQVPCRSIRRDPKGLIHAEVHATRCLSIPCHPQMSDDEVNKVIEAINEFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQM3</accession>
    <name>A0A0M2UQM3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02904</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18398.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18398">
        <property type="protein sequence ID" value="KKO18398"/>
        <property type="gene ID" value="BROFUL_02904"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045397">
        <property type="entry name" value="DUF6516"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20126">
        <property type="entry name" value="DUF6516"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18398.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="86" mass="10300" checksum="2429D11931D48BFE" modified="2015-11-11" version="1">MKIRADIKNNTELYLREYMRIGDEKYSYHWQEKEGKLITRWDNAPHQKVKTFPHHKHLSDGTVVESYEITLEKVLKSIETKLGVKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQV3</accession>
    <name>A0A0M2UQV3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">5'-nucleotidase SurE</fullName>
            <ecNumber evidence="5">3.1.3.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Nucleoside 5'-monophosphate phosphohydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">surE</name>
        <name evidence="7" type="ORF">BROFUL_03308</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>a ribonucleoside 5'-phosphate + H2O = a ribonucleoside + phosphate</text>
            <dbReference type="Rhea" id="RHEA:12484"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:18254"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58043"/>
            <dbReference type="EC" id="3.1.3.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
        <text evidence="5">Binds 1 divalent metal cation per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the SurE nucleotidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.5" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000301">
        <property type="protein sequence ID" value="KKO18030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18030">
        <property type="protein sequence ID" value="KKO18030"/>
        <property type="gene ID" value="BROFUL_03308"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4076"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106411">
        <property type="term" value="F:XMP 5'-nucleosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1210.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00060">
        <property type="entry name" value="SurE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030048">
        <property type="entry name" value="SurE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002828">
        <property type="entry name" value="SurE-like_Pase/nucleotidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036523">
        <property type="entry name" value="SurE-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30457">
        <property type="entry name" value="PTHR30457"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01975">
        <property type="entry name" value="SurE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64167">
        <property type="entry name" value="SSF64167"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00087">
        <property type="entry name" value="surE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SurE" evidence="6">
        <location>
            <begin position="3"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="8"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="9"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="39"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="95"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00060"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="256" mass="28258" checksum="EA1F473CA3BF207C" modified="2015-11-11" version="1">MQILLTNDDGIYAPGIAALKHMIQDMGQVAVVAPDVEQSGVGHSITFGHPLRIREVQVNNERIGYGVNGSPADCVKLAIYEIMKQKPDVVISGINMGSNVGIHILYSGTVAAAVEAAIMGFPSIAVSFDLSGRYDDVHSAAKIARKVIERILTHPLPKGTLLNVNIPAIPPELIKGIKITRQFTHDFKENFEKRIDPGGRAYYWLIGADKTLHREKDTDIHAVNEGYISITPLRYDLTDYTMQQRIVEWDWNGIAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR37</accession>
    <name>A0A0M2UR37_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02989</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000281">
        <property type="protein sequence ID" value="KKO18332.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18332">
        <property type="protein sequence ID" value="KKO18332"/>
        <property type="gene ID" value="BROFUL_02989"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024214">
        <property type="entry name" value="DUF3843"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12954">
        <property type="entry name" value="DUF3843"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18332.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="515" mass="60684" checksum="AF68AACE6EDC3646" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URB7</accession>
    <name>A0A0M2URB7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Glutamyl-tRNA(Gln) amidotransferase subunit A</fullName>
            <shortName evidence="7">Glu-ADT subunit A</shortName>
            <ecNumber evidence="7">6.3.5.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">gatA</name>
        <name evidence="9" type="ORF">BROFUL_03124</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>ATP + H2O + L-glutamine + L-glutamyl-tRNA(Gln) = ADP + H(+) + L-glutamate + L-glutaminyl-tRNA(Gln) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:17521"/>
            <dbReference type="Rhea" id="RHEA-COMP:9681"/>
            <dbReference type="Rhea" id="RHEA-COMP:9684"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:78520"/>
            <dbReference type="ChEBI" id="CHEBI:78521"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.5.7"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="7">Heterotrimer of A, B and C subunits.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the amidase family. GatA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.7" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000287">
        <property type="protein sequence ID" value="KKO18175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18175">
        <property type="protein sequence ID" value="KKO18175"/>
        <property type="gene ID" value="BROFUL_03124"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3859"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030956">
        <property type="term" value="C:glutamyl-tRNA(Gln) amidotransferase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050567">
        <property type="term" value="F:glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00120">
        <property type="entry name" value="GatA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000120">
        <property type="entry name" value="Amidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020556">
        <property type="entry name" value="Amidase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023631">
        <property type="entry name" value="Amidase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036928">
        <property type="entry name" value="AS_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004412">
        <property type="entry name" value="GatA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11895">
        <property type="entry name" value="PTHR11895"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01425">
        <property type="entry name" value="Amidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75304">
        <property type="entry name" value="SSF75304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00132">
        <property type="entry name" value="gatA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00571">
        <property type="entry name" value="AMIDASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 7" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 7" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Amidase" evidence="8">
        <location>
            <begin position="24"/>
            <end position="467"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="7">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="7">
        <location>
            <position position="154"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-ester intermediate" evidence="7">
        <location>
            <position position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001243"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="494" mass="54119" checksum="8280B4AB1F9D15C7" modified="2015-11-11" version="1">MRLSEYTALQIKTKIISREIRPIDLTEHFINRIKNIDTDVQAYLTINEEDAIKRATQLEKKIENSGNIGLLAGVPIAVKDNICTKGLSTTCASKILKNFIPPYDAFVIKRLKEEDAIILGKTNLDEFAMGSSTENSAYKITRNPWNSEYVPGGSSGGSAAAVAADLSVMALGSDTGGSVRQPAALCGVVGIKPTYGRVSRFGLIAFGSSLDQIGTFTRDVKDAALLLEVIAGHDSHDSTSLPEPVPDYLREIDSGVRGVRIGIPKEYFADGLNRDVHNALKGALKRYEQLGAKIIDVSLPHTEYAVAVYYIVANAEASSNLARYDGVRYGYRASKPHGIVDLYCRTRSEGFGTEVKRRIMLGNYALSSGYYDAYYLKASKVRSLIKNDFDVAFQTVDCIICPTSPVPGFKIGERAKNPLEMYLSDIYTIPANLAGIPGISLPCGFSQEGLPIGMQILGKHFEEKKLLQIAYAFERETDFHTKKPVLKSSSEQSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URB8</accession>
    <name>A0A0M2URB8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02923</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18417.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18417">
        <property type="protein sequence ID" value="KKO18417"/>
        <property type="gene ID" value="BROFUL_02923"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023614">
        <property type="entry name" value="Porin_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18417.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="161" mass="18668" checksum="C9FAECCE1992EAAA" modified="2015-11-11" version="1">MEFGGSTYTQRYDDKNENQITIPALDFAYQKGPFELVGEGAYAFIETNDFAEDAGIADSMWGYYLEGRYHFMPSCLRSWAPKIFTENSTFTGVLRWDQVKTSELDATDGRIDYLRNRVTPGINYRYTEDTVFKFDYQINMEEKDLADRGNNAFVFSVATYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URJ8</accession>
    <name>A0A0M2URJ8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02640</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18688">
        <property type="protein sequence ID" value="KKO18688"/>
        <property type="gene ID" value="BROFUL_02640"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.210.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036927">
        <property type="entry name" value="Cyt_c_oxase-like_su1_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81442">
        <property type="entry name" value="SSF81442"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="41"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="74"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="101"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="129" mass="14399" checksum="8BC2601B07774556" modified="2015-11-11" version="1">MSPLSKNFVRASLIYFFIAAILGIIMISMRSYPAQLLFSHVHLNLLGWMSMMIFGVGYHILPRFSGTPLAYPKIGALQFYLANIGLVGLVCFRPIHPLAEIFAGLLVVSVGLFVFNIWMSMIPPKPEPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URL8</accession>
    <name>A0A0M2URL8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Flagellar motor switch protein FliM</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">fliM</name>
        <name evidence="11" type="ORF">BROFUL_03012</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Bacterial flagellum basal body</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the FliM family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18285.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18285">
        <property type="protein sequence ID" value="KKO18285"/>
        <property type="gene ID" value="BROFUL_03012"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009425">
        <property type="term" value="C:bacterial-type flagellum basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003774">
        <property type="term" value="F:cytoskeletal motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd17908">
        <property type="entry name" value="FliM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.330.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028976">
        <property type="entry name" value="CheC-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001689">
        <property type="entry name" value="Flag_FliM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001543">
        <property type="entry name" value="FliN-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036429">
        <property type="entry name" value="SpoA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02154">
        <property type="entry name" value="FliM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01052">
        <property type="entry name" value="FliMN_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002888">
        <property type="entry name" value="FliM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00955">
        <property type="entry name" value="FLGMOTORFLIM"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101801">
        <property type="entry name" value="SSF101801"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103039">
        <property type="entry name" value="SSF103039"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="11" id="KW-0966">Cell projection</keyword>
    <keyword evidence="6" id="KW-0145">Chemotaxis</keyword>
    <keyword evidence="11" id="KW-0969">Cilium</keyword>
    <keyword evidence="7" id="KW-0283">Flagellar rotation</keyword>
    <keyword evidence="11" id="KW-0282">Flagellum</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FliMN_C" evidence="10">
        <location>
            <begin position="248"/>
            <end position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00021898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF01052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO18285.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="318" mass="35679" checksum="EADA9A0A13813F49" modified="2015-11-11" version="1">MSNAILTNQEVEALLSAIENGQVLVGQKVEPKKERKIQHYDFRRPDRFPREQKRRLQKISEEMAKTIGVTLSRFLRVSVDVELIAIEEFCYDVFLNSFTDRICANVLNLKPLNGYGCLTIDVGFCLAIVDRGLGGPGKIPQKIRALTLIEESVISVVLSSIVEDVKHCWFKLMQPEWKIEKMDMDIKSLQIAPATELVIAINFAANGDLGNGTIILCIPVTSLEMIMGKSRMKKIERKDELALIEDVIRETELTTTVVLGSTQLVLNDLINLKVGDVLRLDNKITEDVCLVIEERAKYYGKPGAMGKKLAFQVSSKVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URT1</accession>
    <name>A0A0M2URT1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter ATP-binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_02519</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000236">
        <property type="protein sequence ID" value="KKO18778.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18778">
        <property type="protein sequence ID" value="KKO18778"/>
        <property type="gene ID" value="BROFUL_02519"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008643">
        <property type="term" value="P:carbohydrate transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03301">
        <property type="entry name" value="ABC_MalK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015855">
        <property type="entry name" value="ABC_transpr_MalK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013611">
        <property type="entry name" value="Transp-assoc_OB_typ2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08402">
        <property type="entry name" value="TOBE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="3"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="35"/>
            <end position="42"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18778.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="351" mass="39533" checksum="6B40DFDECDB08E5F" modified="2015-11-11" version="1">MKIRLQDLTKQYRNTTALHHLNLDIHDGEFLVVLGSSGSGKSTTLNMIAGLETPTSGYIFFNERVVNQIPPGKRDIALVFQNYALYPHMRVYDNIAFPLKIRKGRDIDQKVNHTAEMLGLQSLLHKYPKELSGGERQRVALARALVRNPQVFLMDEPLSNLDARLRLSARGELKKLQRERNITTVYVTHDQTEALTLGDRIVIMDKGILQQTGTPSEIYQKPRNMFVAGFLGTPPMNTINAEPCGIRSFISGESTFEFPVPLPVKKSCIFGIRPEKLTIAPASTPCAIQGLIEYVEYLGNETINHVKITPHVTWYAKDVAERGRVGEFVGLKFLPEDTHWFDPVTGERIAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URX7</accession>
    <name>A0A0M2URX7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Na+-translocating NADH-quinone reductase subunit C</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_02901</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18395.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18395">
        <property type="protein sequence ID" value="KKO18395"/>
        <property type="gene ID" value="BROFUL_02901"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007329">
        <property type="entry name" value="FMN-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010209">
        <property type="entry name" value="Ion_transpt_RnfG/RsxG"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36118">
        <property type="entry name" value="PTHR36118"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04205">
        <property type="entry name" value="FMN_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00900">
        <property type="entry name" value="FMN_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0249">Electron transport</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4" id="KW-0288">FMN</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="31"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="domain" description="FMN_bind" evidence="7">
        <location>
            <begin position="161"/>
            <end position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18395.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="243" mass="27305" checksum="7405DF89A9C0DBFA" modified="2015-11-11" version="1">MKSDEARRSANRIDKMKIPLSSKYLTELKLILSRIAAILFITFLPCIGLLMVYVFTAPRIAEYYDIKEKRAVLDIFHIPYRTTERHIAGFAFTSIDKKDLKDVFRNNITVEEPKVAWEIQATGTQTAGGKPKGEQRKKLYKYVKDGKLQGIGFVESRMGYGYNKSSTMSLFICVEPDLETLKGLEVLDHSETPGLGGRIVEESFKKQFVGKKVRPRIFVVKGKKAEGANEVDAITGATNTSKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URZ7</accession>
    <name>A0A0M2URZ7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02687</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000247">
        <property type="protein sequence ID" value="KKO18612.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18612">
        <property type="protein sequence ID" value="KKO18612"/>
        <property type="gene ID" value="BROFUL_02687"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18612.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="325" mass="37392" checksum="B1E2079EB7AB29A9" modified="2015-11-11" version="1">MRKRFEQQLKLGIIPISGVKLPIKSRDELPPILRALQHIYVTPELNEEVFRILEAKVTKGKKKTGRYGMDLWHILVLSVVRLGLDADYDRLEDFANHHKLIRQIMGVETAFGEAKVFSMQSIKDNIRLLDEETLRQINEVVISSGHQLVKKKDEGLCIKVDTYVLETNVHFPTDMNLLWDAGRKSLDMIEDAIEEGILAGKGWRKSKYWRRELKKLMRISAKASSSGGKNKEEHVRSYLELSRGLSEKIGASLLAIYEKVLTTNQVDKHAGKIGTLEYFHGMLNKQIDLVERRVIRDEVIPAAEKVHSLFEPHTEWLYKGKSNKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US53</accession>
    <name>A0A0M2US53_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cytochrome c biogenesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">ccsA_2</name>
        <name evidence="7" type="ORF">BROFUL_02832</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000266">
        <property type="protein sequence ID" value="KKO18475.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18475">
        <property type="protein sequence ID" value="KKO18475"/>
        <property type="gene ID" value="BROFUL_02832"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017004">
        <property type="term" value="P:cytochrome complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002541">
        <property type="entry name" value="Cyt_c_assembly"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045062">
        <property type="entry name" value="Cyt_c_biogenesis_CcsA/CcmC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30071">
        <property type="entry name" value="PTHR30071"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01578">
        <property type="entry name" value="Cytochrom_C_asm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="37"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="69"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="92"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="123"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="170"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="200"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="230"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrom_C_asm" evidence="6">
        <location>
            <begin position="64"/>
            <end position="247"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01578"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18475.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="255" mass="29388" checksum="6C3214ECC63C37FB" modified="2015-11-11" version="1">MDTAHFLNQLSVNLYWLCFIAYTAYWGIGFTRLKLRFPILAGMIVLDLASITLRGISIEYFPLTNKFESFNAFAVAAFIILLINMRTKSHIYRMSLFGVGYGFYAAAAYFPKGLSYAPPLMLTLWYVLHVPLSFFCYALWVSAMSAAVARYFTRDEKKAYDHLIDLGFQYGLVIFSVSMIFGGLWGYVAWGAYFLWDAKVVWSVIIWFFYATCLHLDYWQEAKRYKPPMAIVGFIILMMTYVGTSFLIGSSHSFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US87</accession>
    <name>A0A0M2US87_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Chaperone protein DnaK</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">HSP70</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Heat shock 70 kDa protein</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Heat shock protein 70</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">dnaK</name>
        <name evidence="9" type="ORF">BROFUL_02586</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Acts as a chaperone.</text>
    </comment>
    <comment type="induction">
        <text evidence="6">By stress conditions e.g. heat shock.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the heat shock protein 70 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000239">
        <property type="protein sequence ID" value="KKO18707.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18707">
        <property type="protein sequence ID" value="KKO18707"/>
        <property type="gene ID" value="BROFUL_02586"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3212"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1270.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.34.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00332">
        <property type="entry name" value="DnaK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012725">
        <property type="entry name" value="Chaperone_DnaK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018181">
        <property type="entry name" value="Heat_shock_70_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029048">
        <property type="entry name" value="HSP70_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029047">
        <property type="entry name" value="HSP70_peptide-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013126">
        <property type="entry name" value="Hsp_70_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19375">
        <property type="entry name" value="PTHR19375"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00012">
        <property type="entry name" value="HSP70"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100920">
        <property type="entry name" value="SSF100920"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100934">
        <property type="entry name" value="SSF100934"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02350">
        <property type="entry name" value="prok_dnaK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00297">
        <property type="entry name" value="HSP70_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00329">
        <property type="entry name" value="HSP70_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01036">
        <property type="entry name" value="HSP70_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="evidence at transcript level"/>
    <keyword evidence="4 6 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0143">Chaperone</keyword>
    <keyword evidence="3 6 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0346">Stress response</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="495"/>
            <end position="516"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="552"/>
            <end position="622"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="495"/>
            <end position="514"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="593"/>
            <end position="622"/>
        </location>
    </feature>
    <feature type="modified residue" description="Phosphothreonine; by autocatalysis" evidence="6">
        <location>
            <position position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007381"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003322"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18707.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="622" mass="67390" checksum="C938756A85E83412" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USB0</accession>
    <name>A0A0M2USB0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02559</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000238">
        <property type="protein sequence ID" value="KKO18727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18727">
        <property type="protein sequence ID" value="KKO18727"/>
        <property type="gene ID" value="BROFUL_02559"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="70" mass="7983" checksum="A89A2225C4EE957F" modified="2015-11-11" version="1">MGEIFLPVVTRVKRFTDWMKKKAVVPEGKKDISRQKFTPHREDEAQANLSIIGPEPSTPLSDIYGRIESL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USD9</accession>
    <name>A0A0M2USD9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Glycerol-3-phosphate dehydrogenase</fullName>
            <ecNumber evidence="8">1.1.1.94</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_03412</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>NADP(+) + sn-glycerol 3-phosphate = dihydroxyacetone phosphate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:11096"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57597"/>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.94"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.94" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000312">
        <property type="protein sequence ID" value="KKO17901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17901">
        <property type="protein sequence ID" value="KKO17901"/>
        <property type="gene ID" value="BROFUL_03412"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4190"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009331">
        <property type="term" value="C:glycerol-3-phosphate dehydrogenase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004367">
        <property type="term" value="F:glycerol-3-phosphate dehydrogenase [NAD+] activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046168">
        <property type="term" value="P:glycerol-3-phosphate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006168">
        <property type="entry name" value="G3P_DH_NAD-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006109">
        <property type="entry name" value="G3P_DH_NAD-dep_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011128">
        <property type="entry name" value="G3P_DH_NAD-dep_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07479">
        <property type="entry name" value="NAD_Gly3P_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01210">
        <property type="entry name" value="NAD_Gly3P_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00077">
        <property type="entry name" value="GPDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00957">
        <property type="entry name" value="NAD_G3PDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="4" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7" id="KW-0520">NAD</keyword>
    <keyword evidence="3 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword evidence="6" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD_Gly3P_dh_N" evidence="9">
        <location>
            <begin position="16"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="domain" description="NAD_Gly3P_dh_C" evidence="10">
        <location>
            <begin position="149"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011009"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF07479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO17901.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="280" mass="30686" checksum="3A7688FF7CB646BA" modified="2015-11-11" version="1">MGRQCVIRGLFEGKKRKCQIFKRHYYPSGISLTSDISPELKDNHLVVSATPTPYLRSVLTKFLDVFSPEIPMVSVTKGIENDTLMTPSEIITNVLGKRPVSLLLGPSHAEEVAHGVPTTVVVSSKDDTLARIVQGVFTTDRFRVYTNPDVTGVELGAAMKNVIAIAAGICDGLKFGDNSKAALISRGLAEISRLGIAMGAEKSTFSGLTGLGDLITTCISLTGGIAGWVSRLEKGKNCRKFWRRWNRLLKGYGPQNPLWRFPENFPWKCPLQKKSTRCSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USG8</accession>
    <name>A0A0M2USG8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Outer membrane lipoprotein carrier protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02302</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO19008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19008">
        <property type="protein sequence ID" value="KKO19008"/>
        <property type="gene ID" value="BROFUL_02302"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd16325">
        <property type="entry name" value="LolA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029046">
        <property type="entry name" value="LolA/LolB/LppX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004564">
        <property type="entry name" value="OM_lipoprot_carrier_LolA-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35869">
        <property type="entry name" value="PTHR35869"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03548">
        <property type="entry name" value="LolA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89392">
        <property type="entry name" value="SSF89392"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="244" mass="27759" checksum="CEF364AD63731A21" modified="2015-11-11" version="1">MVNAEKFNILFSVVVLISLFFLIPLNAASDTAGEVSFSDRQKILEKLKKLAKDTHTITAIVTQEKQLSLLKKKIYIDGSVVIIKNPNVFRWDIVKPDKSIIIIEGETMTIYHPDVKEAQVYNLSENPIARNTVNFFRTTLWGSYTEIEKKFSVTILRKNNEIVFQLVPLSKTVGQYLSSILIYYDEGTGFPRGFEMTTPKGGKTVTRLSNIKINPEIKTDTFKLKLPADVWITNNPEHSQCDIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UST7</accession>
    <name>A0A0M2UST7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02391</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000228">
        <property type="protein sequence ID" value="KKO18912.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18912">
        <property type="protein sequence ID" value="KKO18912"/>
        <property type="gene ID" value="BROFUL_02391"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18912.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="72" mass="8270" checksum="57E3F5A15CE7DE5C" modified="2015-11-11" version="1">MKIKEQAIKELESLGPSEMMKIYEMIISLKSPQKKHKAKTKGGPVYIKVRNILKQCKGSLSDDILLLREDRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USU5</accession>
    <name>A0A0M2USU5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02631</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18680">
        <property type="protein sequence ID" value="KKO18680"/>
        <property type="gene ID" value="BROFUL_02631"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035069">
        <property type="entry name" value="TTHA1013/TTHA0281-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143100">
        <property type="entry name" value="SSF143100"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="81" mass="9346" checksum="71391F4F305F1D1C" modified="2015-11-11" version="1">MLTEYIQKAMGLAHYEIIEGEGTYWGEISGLQGVWGKAETLERCRDELREALEEWIVFRLKNNLELPVIEGINLNVVEHVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USW5</accession>
    <name>A0A0M2USW5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Protein-glutamate methylesterase/protein-glutamine glutaminase</fullName>
            <ecNumber evidence="3">3.1.1.61</ecNumber>
            <ecNumber evidence="3">3.5.1.44</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3 8" type="primary">cheB</name>
        <name evidence="8" type="ORF">BROFUL_02579</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>H2O + L-glutaminyl-[protein] = L-glutamyl-[protein] + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:16441"/>
            <dbReference type="Rhea" id="RHEA-COMP:10207"/>
            <dbReference type="Rhea" id="RHEA-COMP:10208"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29973"/>
            <dbReference type="ChEBI" id="CHEBI:30011"/>
            <dbReference type="EC" id="3.5.1.44"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 3">
            <text>[protein]-L-glutamate 5-O-methyl ester + H2O = H(+) + L-glutamyl-[protein] + methanol</text>
            <dbReference type="Rhea" id="RHEA:23236"/>
            <dbReference type="Rhea" id="RHEA-COMP:10208"/>
            <dbReference type="Rhea" id="RHEA-COMP:10311"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17790"/>
            <dbReference type="ChEBI" id="CHEBI:29973"/>
            <dbReference type="ChEBI" id="CHEBI:82795"/>
            <dbReference type="EC" id="3.1.1.61"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="3">Contains a C-terminal catalytic domain, and an N-terminal region which modulates catalytic activity.</text>
    </comment>
    <comment type="PTM">
        <text evidence="3">Phosphorylated by CheA. Phosphorylation of the N-terminal regulatory domain activates the methylesterase activity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the CheB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.61" evidence="3"/>
    <dbReference type="EC" id="3.5.1.44" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000239">
        <property type="protein sequence ID" value="KKO18700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18700">
        <property type="protein sequence ID" value="KKO18700"/>
        <property type="gene ID" value="BROFUL_02579"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3202"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000156">
        <property type="term" value="F:phosphorelay response regulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008984">
        <property type="term" value="F:protein-glutamate methylesterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050568">
        <property type="term" value="F:protein-glutamine glutaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018277">
        <property type="term" value="P:protein deamination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006482">
        <property type="term" value="P:protein demethylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16432">
        <property type="entry name" value="CheB_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00099">
        <property type="entry name" value="CheB_chemtxs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008248">
        <property type="entry name" value="CheB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035909">
        <property type="entry name" value="CheB_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000673">
        <property type="entry name" value="Sig_transdc_resp-reg_Me-estase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01339">
        <property type="entry name" value="CheB_methylest"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000876">
        <property type="entry name" value="RR_chemtxs_CheB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52738">
        <property type="entry name" value="SSF52738"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50122">
        <property type="entry name" value="CHEB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0145">Chemotaxis</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 3 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 5" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="6">
        <location>
            <begin position="6"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="domain" description="CheB-type methylesterase" evidence="7">
        <location>
            <begin position="162"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="active site" evidence="3 4">
        <location>
            <position position="174"/>
        </location>
    </feature>
    <feature type="active site" evidence="3 4">
        <location>
            <position position="200"/>
        </location>
    </feature>
    <feature type="active site" evidence="3 4">
        <location>
            <position position="296"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="3 5">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00099"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="364" mass="39525" checksum="58EDF9D017680967" modified="2015-11-11" version="1">MVKKIKVLIVDDSAVVRKILSAGLSKDHEIEVIGTAADPFIARDKIVNLRPHVVTLDVEMPRMDGISFLQRLMTYYPLPVIMVSSLTQAGCETTLKALEIGALDFVAKPSLDISHTLDEIITELAEKIKESAHVKVKKKEYFKDAGNKKTNTLSPKTNHALINSTHKIVAIGASTGGTEALKEVLIHMPSNAPGILIVQHMPQLFTKSFADRLNSLCSIEVREAKNGDSIIPGLALIAPGNYHMELRRNGARYHVITNQAPPVRRHRPSVEVLFESVAKYAGSNAVGVIMTGMGDDGANGLLKMKEAGAKTIAQDEDSCVVFGMPKEAIKLGAVDTVVPLNKITPSVLSSLEMKTPQSLLRQKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USW7</accession>
    <name>A0A0M2USW7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02335</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18942">
        <property type="protein sequence ID" value="KKO18942"/>
        <property type="gene ID" value="BROFUL_02335"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="39" mass="4436" checksum="94D6438BCFDFB8B7" modified="2015-11-11" version="1">MIAGYIKLKKDAMKATKTVVHKDVFTQKISRIDCCSLHN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT17</accession>
    <name>A0A0M2UT17_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Fumarate hydratase beta subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03170</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-I fumarase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18121">
        <property type="protein sequence ID" value="KKO18121"/>
        <property type="gene ID" value="BROFUL_03170"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3911"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016836">
        <property type="term" value="F:hydro-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004647">
        <property type="entry name" value="Fe-S_hydro-lyase_TtdB-typ_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036660">
        <property type="entry name" value="Fe-S_hydroAse_TtdB_cat_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05683">
        <property type="entry name" value="Fumerase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117457">
        <property type="entry name" value="SSF117457"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00723">
        <property type="entry name" value="ttdB_fumA_fumB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fumerase_C" evidence="3">
        <location>
            <begin position="8"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF05683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="185" mass="20256" checksum="1D3092B82C02AF3F" modified="2015-11-11" version="1">MSNIIHAKTPLTDDTIAHLRIGNRVLITGIIYTARDAAHKRLVELADQGKELPFDVQNQIIYYVGPSPARPGRPIGSCGPTTSYRMDVYTPTLLAMGLKATIGKGNRSERVIEAMKRYKAVYFVATGGAAALLAKRVKKAEVIAYHDLGAEAIMRLEVEDFPVVVANDIYGNDLYSEGMAKYQNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT85</accession>
    <name>A0A0M2UT85_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03094</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000286">
        <property type="protein sequence ID" value="KKO18196.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18196">
        <property type="protein sequence ID" value="KKO18196"/>
        <property type="gene ID" value="BROFUL_03094"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="41"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="72"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="111"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="147"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="187"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18196.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="245" mass="27871" checksum="DCC1DCC6DB7BCAF4" modified="2015-11-11" version="1">MNFLKRTIPLIIAFVMGVLMAMQYYVPHKLSQDLLEVVSKWDRLIAGFAVFIGAYSLLHLHWTRIKRKMEGWGYSVFVYFGAIITLFFGFLNGGKFFWNDKQEGTMFDWLYSYVQVPTGATIFSILAFFIASAAYRTFRARTNESTVLLIAAILVMLGRVPIGNYISQYIPAIADWIMAVPNLAAKRGILLGVSLGAIATSIKIIFGIERSYLAEVINGKIFTDRPPHYLCNHHSRRYRLSYLAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT86</accession>
    <name>A0A0M2UT86_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02029</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the N-terminal section; belongs to the zinc metallo-hydrolase group 3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000206">
        <property type="protein sequence ID" value="KKO19273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19273">
        <property type="protein sequence ID" value="KKO19273"/>
        <property type="gene ID" value="BROFUL_02029"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2530"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008254">
        <property type="entry name" value="Flavodoxin/NO_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016440">
        <property type="entry name" value="Rubredoxin-O_OxRdtase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00258">
        <property type="entry name" value="Flavodoxin_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005243">
        <property type="entry name" value="ROO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50902">
        <property type="entry name" value="FLAVODOXIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavodoxin-like" evidence="2">
        <location>
            <begin position="250"/>
            <end position="387"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="403" mass="45794" checksum="2175B2220872131F" modified="2015-11-11" version="1">MNPIKLKEGVYWVGEVDWELRNFHGYATQRGSTYNSYLILDEKITLIDGVRPYLYDKMIKRLSSLIDPADIHYIISNHVEMDHSGSFPLLTKTAKNATLITSPLGQKGLLAHYKRNDWNFKIVKSDETISLGKKNIKFVLTPLVHWPDNMVSYLTEDGILFSNDAFGQHIASSERFDDEYPLGIVIDEAEKYYANIVLPYSSQVQKAMDAVTPLKIDMIAPSHGIVWRSHVKTIVEEYKKWASNQVENKCLIIYDTMWKSTEKIAGILQEVFESHGIPVKMASLRHSHISDIVADVLTTRFICVGSPTLNSNMLPTVAGFLTYLKGLSPKNRIGLAFGSYGWGGQAVTHVEDILKDCGFEMMKSIKVQYVPDEAQLQEIFNLVKQEILMREWVFNKPPIATRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTF0</accession>
    <name>A0A0M2UTF0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Sigma 54 response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">ntrC</name>
        <name evidence="9" type="ORF">BROFUL_02993</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18266.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18266">
        <property type="protein sequence ID" value="KKO18266"/>
        <property type="gene ID" value="BROFUL_02993"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3699"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025662">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025943">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025944">
        <property type="entry name" value="Sigma_54_int_dom_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00158">
        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01590">
        <property type="entry name" value="HTHFIS"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00675">
        <property type="entry name" value="SIGMA54_INTERACT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00676">
        <property type="entry name" value="SIGMA54_INTERACT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00688">
        <property type="entry name" value="SIGMA54_INTERACT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="8">
        <location>
            <begin position="6"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="7">
        <location>
            <begin position="147"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="6">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18266.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="469" mass="52721" checksum="C89021433056BAE9" modified="2015-11-11" version="1">MSLKAIILIVDDEETIRFSIKEFLSGLGYDVVVAETSEQALEKINEFLPDLVLLDLRLPNMGGIELLEKVKTKDPNALIIVMTGYGSIDSAVEAMKTGAYDYLEKPFKTEHLKLVVEKALSTQALRREVLELRAQQCTFADEPGSIIIGNSYQMKAIYNLIKQVAKSPSTTVLIQGESGTGKELVARAVHHLSSRKNGRFVDINCAALTESLLEAELFGYEKGSFTGAIATGKPGLFEVADKGTIFLDEIGEMGITLQAKLLRILQERQFKRVGGINDIKIDVRVIASTNRNLEEEVESDNFRKDLYYRLKVLPIYIPPLRERKDDIMLLVKHFVHKYNNEFNKNVHHIPAETEKMLLEYKWPGNIRELKNVVERAVLIAGDGVLHPEIGASIDSRRGSAVNANFANDKNNDGENHETLDIRSLANIERQHIQKVLNETSWRRTEAAKILGINRTTLYNKIKEYGLCPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTG9</accession>
    <name>A0A0M2UTG9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02389</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000228">
        <property type="protein sequence ID" value="KKO18910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18910">
        <property type="protein sequence ID" value="KKO18910"/>
        <property type="gene ID" value="BROFUL_02389"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2969"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="146" mass="16971" checksum="65BB9954A2EB570A" modified="2015-11-11" version="1">MIKEITEEGLEYLYHEGELYSVVLRNSFTSNTIRFFTPDSFSQQLGYLPHKKGNIIKPHKHKINKREILYTHEVILLKKGKVKVNFYKNEKTYVDSEMLNEGDIILLCGGGHGFELLEDTIMIEIKQGPYVGLDDKERFEGVEECK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTL9</accession>
    <name>A0A0M2UTL9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Aldo_ket_red domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02140</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19157">
        <property type="protein sequence ID" value="KKO19157"/>
        <property type="gene ID" value="BROFUL_02140"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2669"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020471">
        <property type="entry name" value="AKR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NADP_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00069">
        <property type="entry name" value="ALDKETRDTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="SSF51430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldo_ket_red" evidence="1">
        <location>
            <begin position="15"/>
            <end position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="323" mass="36227" checksum="0A612B524FF10866" modified="2015-11-11" version="1">MKYRKLGNTGIEVSEIGFGTWGLGGNSYGPVDDNVSKTALRFAFDSGITFYDTSDLYGNGHSEEVLGDALHDVRDKIIISTKVGLLPHTGFGMPCDFSPAYIRQELDVSLRRLRSDYVDIYLLHSPTIEMLREDREIVATLQILKEAGKIHAYGISVRSPDDGLVAIQEFGINVVQVNFNMIDHRAIDNGLFDVACEKKVGVIARTPLCFGYLTGKLHGNEKFEGIDHRANWPVDQRQRWANAPDLFLFLNQRKNRTPAQSALRFCLDHKSVSTVIPGMMNCNEVRENALASSLEALSAEEVARIKLIYENNVFYDHSAKQRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTV7</accession>
    <name>A0A0M2UTV7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Competence/damage-inducible protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02047</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19247.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19247">
        <property type="protein sequence ID" value="KKO19247"/>
        <property type="gene ID" value="BROFUL_02047"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.980.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036425">
        <property type="entry name" value="MoaB/Mog-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001453">
        <property type="entry name" value="MoaB/Mog_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00994">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53218">
        <property type="entry name" value="SSF53218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MoCF_biosynth" evidence="1">
        <location>
            <begin position="26"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19247.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="74" mass="8061" checksum="BBB70DF6A43BF50C" modified="2015-11-11" version="1">MNANEPAHWAGVCGREKIEDDMTPAEIITIGTEIMTGQIINANARYIAEILTEKGIRVLFQTSVGDDQEALKSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTY6</accession>
    <name>A0A0M2UTY6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01772</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000184">
        <property type="protein sequence ID" value="KKO19523.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19523">
        <property type="protein sequence ID" value="KKO19523"/>
        <property type="gene ID" value="BROFUL_01772"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1440.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012657">
        <property type="entry name" value="23S_rRNA-intervening_sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036583">
        <property type="entry name" value="23S_rRNA_IVS_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158446">
        <property type="entry name" value="SSF158446"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02436">
        <property type="entry name" value="TIGR02436"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19523.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="82" mass="9291" checksum="AB55E10AAC34F701" modified="2015-11-11" version="1">MPAKHQNTSTKSQINSNKQNPMFKQYDLEERTFCFAKNVTLYVRQLTKNVSTLEHGKQVIRASGSVGANYIEANEALSKKDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU50</accession>
    <name>A0A0M2UU50_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03287</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000301">
        <property type="protein sequence ID" value="KKO18009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18009">
        <property type="protein sequence ID" value="KKO18009"/>
        <property type="gene ID" value="BROFUL_03287"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="78" mass="9023" checksum="B6FA85239D552AD9" modified="2015-11-11" version="1">MDLIEEIKRFPAAKRESIEMLTGEIDKKYEDLHTSLAVLQDSLDSLQLNVRYLLFDLEATKKENAALRKKLEEQGNSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU69</accession>
    <name>A0A0M2UU69_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03307</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000301">
        <property type="protein sequence ID" value="KKO18029.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18029">
        <property type="protein sequence ID" value="KKO18029"/>
        <property type="gene ID" value="BROFUL_03307"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02522">
        <property type="entry name" value="GT_2_like_a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026461">
        <property type="entry name" value="Trfase_2_rSAM/seldom_assoc"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04283">
        <property type="entry name" value="glyco_like_mftF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="4"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18029.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="223" mass="25343" checksum="3E167BB9501E49FB" modified="2015-11-11" version="1">MKISVVIPTLNEESCLEKTLRSVIRQDGEYECFVVDGGSADRTVTIARSYTTVIHSKRGRAIQMNCGARACNGSIFLFLHADTVLPDNAFRNIRKRMKDPAVAGGSFSLAFDAETGILKGISFLTGFNFRLFHFGDQGIFVRREVFQALRGYKEMPIMEDYDFYKRLGRQGKVILIRVPVISSARRFVRKGVVRQLLINKLVVLAYWAGVDIRTIKRFYDDAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU76</accession>
    <name>A0A0M2UU76_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative lipoprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02749</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000257">
        <property type="protein sequence ID" value="KKO18551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18551">
        <property type="protein sequence ID" value="KKO18551"/>
        <property type="gene ID" value="BROFUL_02749"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029413">
        <property type="entry name" value="RG-lyase_II"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14686">
        <property type="entry name" value="fn3_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644079" evidence="1">
        <location>
            <begin position="24"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="domain" description="fn3_3" evidence="2">
        <location>
            <begin position="195"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14686"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="245" mass="28052" checksum="7F6B59D686791C51" modified="2015-11-11" version="1">MKQTRFFIILFAFFCCNFVPSKAILAGKNYTEKEVTDGGTVIGHVKYRGELTAVGLNLYRDWELSDTSKATSEKLIFSKINNGLKNAVVALPNISQGKKKALPVIRPIIDQQNNYFIPHVIAIVSGTTVDFLNGDEELHNIHTRSTRNQPFNLGTTYKQRISKKFDYPEIIKVTCDLHKNASAWIVVLDHPYFDMTDRNGYFEICDIPPGTYTFQVWHEELGNLEKEVTVQPKETTTIEFVYYEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUA2</accession>
    <name>A0A0M2UUA2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02724</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000253">
        <property type="protein sequence ID" value="KKO18576.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18576">
        <property type="protein sequence ID" value="KKO18576"/>
        <property type="gene ID" value="BROFUL_02724"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18576.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="135" mass="14560" checksum="BD53244620140B2D" modified="2015-11-11" version="1">MKKITYPSSRYYVGQTGQFKQAYATVEVIGPTGIVATTIWAVVDTGAVFTQFPQAIATAIKLSPSTSIKQSVMLADGSTTTMDLYPNVGFKFEGKPLPTTKIIFHPSGNSPAIIGLETIQAAVELGFDSQSWHWV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUH3</accession>
    <name>A0A0M2UUH3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01591</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000168">
        <property type="protein sequence ID" value="KKO19703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19703">
        <property type="protein sequence ID" value="KKO19703"/>
        <property type="gene ID" value="BROFUL_01591"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1969"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001610">
        <property type="entry name" value="PAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13426">
        <property type="entry name" value="PAS_9"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00086">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HAMP" evidence="3">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="1">
        <location>
            <begin position="33"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="2">
        <location>
            <begin position="107"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="1">
        <location>
            <begin position="160"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="2">
        <location>
            <begin position="234"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="1">
        <location>
            <begin position="287"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="2">
        <location>
            <begin position="361"/>
            <end position="404"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="404" mass="46660" checksum="0E66915C2B4A636A" modified="2015-11-11" version="1">MDIKREDEIGGLANSFNTMAKSLGEKTREVVESEKRYRGMFESLKEGVYQSEPGAEGVFTFINRAGAEILGYSSPEEVIGTKVKDIYVDPEDRRRLCERLEKDGVWREFVSLCKRKNGDSFYAERTSNLLKDEKELPVAIHGVFRDISERKRTEIEIVESEKRYRVLFDSIKEGVYQSEPTADGVFTWINQAGAEILGYNSPEEAIGTRVKNIYINPDDRKIIVEKLTKEGVWRNFSSLCKRKNGERFCMERTSNLVTDDKGKPTRIDGIFRDITERKRSEEELQESERHYRQLLDSLKEGIYQSAPTVDGTFTWINQAGAEILGYNSPEEVIGTQVKDIYVNPDDRKELIAKLEKDGIWRDFTSYCKRKNGERFISERTSNLERDESGKPIRITGVFRDITER</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUH8</accession>
    <name>A0A0M2UUH8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02021</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000206">
        <property type="protein sequence ID" value="KKO19265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19265">
        <property type="protein sequence ID" value="KKO19265"/>
        <property type="gene ID" value="BROFUL_02021"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="72" mass="7715" checksum="5ED914151ACF1F44" modified="2015-11-11" version="1">MACLKFLYLKEEEEMLKKFGYSLLVVGALVVGVGAASSALVGTVIASEAKCDKCGHTAKEGKDCKCECHHKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUJ5</accession>
    <name>A0A0M2UUJ5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">UDP-glucuronate decarboxylase</fullName>
            <ecNumber evidence="4">4.1.1.35</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_02602</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Nucleotide-sugar biosynthesis; UDP-alpha-D-xylose biosynthesis; UDP-alpha-D-xylose from UDP-alpha-D-glucuronate: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the NAD(P)-dependent epimerase/dehydratase family. UDP-glucuronic acid decarboxylase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.35" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18651">
        <property type="protein sequence ID" value="KKO18651"/>
        <property type="gene ID" value="BROFUL_02602"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3229"/>
    <dbReference type="UniPathway" id="UPA00796">
        <property type="reaction ID" value="UER00771"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070403">
        <property type="term" value="F:NAD+ binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048040">
        <property type="term" value="F:UDP-glucuronate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042732">
        <property type="term" value="P:D-xylose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033320">
        <property type="term" value="P:UDP-D-xylose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016040">
        <property type="entry name" value="NAD(P)-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044516">
        <property type="entry name" value="UXS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43078">
        <property type="entry name" value="PTHR43078"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16363">
        <property type="entry name" value="GDP_Man_Dehyd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="6" id="KW-0456">Lyase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD(P)-bd_dom" evidence="7">
        <location>
            <begin position="5"/>
            <end position="301"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001911"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012290"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF16363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="316" mass="35483" checksum="90C55526DE48DF6C" modified="2015-11-11" version="1">MRTVITGGAGFIGSHLCDYLIEKGHEVVCIDNLLTGKTDNIAHLMGNGQFRFIKHNVSDYIYVDGQVDNILHFASPASPFDYLEFPIQTLKVGSLGTLNSLGLAKAKKARFLLASTSEVYGDPQIHPQPEDYWGHVNPVGPRGVYDEAKRFAEAMTMAYYRYHNVDTRIARIFNTYGPRMRVRDGRALPNFMCQALKGEDITIFGNGLQTRSFCYISDLVAGIYQLLLSEERDPVNIGNPEEITIHQLASEILTLTKSKSKMIFKPLPVDDPKVRQPDISKAKKVLRWEPKVSRTEGLQKTLAYFRDELIPAGKDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUK0</accession>
    <name>A0A0M2UUK0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01955</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19295.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19295">
        <property type="protein sequence ID" value="KKO19295"/>
        <property type="gene ID" value="BROFUL_01955"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19295.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="56" mass="6615" checksum="863F083B65CCF366" modified="2015-11-11" version="1">MLQVLFRIDEFFRFVRIFYPTEHMTGLIRTYRKGTDFQTLLHAALHDGDIINVTVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUN3</accession>
    <name>A0A0M2UUN3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cobyrinate a,c-diamide synthase</fullName>
            <ecNumber evidence="3">6.3.5.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Cobyrinic acid a,c-diamide synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">cbiA</name>
        <name evidence="6" type="ORF">BROFUL_02580</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>2 ATP + cob(II)yrinate + 2 H2O + 2 L-glutamine = 2 ADP + cob(II)yrinate a,c diamide + 2 H(+) + 2 L-glutamate + 2 phosphate</text>
            <dbReference type="Rhea" id="RHEA:26289"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58537"/>
            <dbReference type="ChEBI" id="CHEBI:58894"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.5.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 3">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Cofactor biosynthesis; adenosylcobalamin biosynthesis; cob(II)yrinate a,c-diamide from sirohydrochlorin (anaerobic route): step 10/10.</text>
    </comment>
    <comment type="domain">
        <text evidence="3">Comprises of two domains. The C-terminal domain contains the binding site for glutamine and catalyzes the hydrolysis of this substrate to glutamate and ammonia. The N-terminal domain is anticipated to bind ATP and cobyrinate and catalyzes the ultimate synthesis of the diamide product. The ammonia produced via the glutaminase domain is probably translocated to the adjacent domain via a molecular tunnel, where it reacts with an activated intermediate.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="3">The a and c carboxylates of cobyrinate are activated for nucleophilic attack via formation of a phosphorylated intermediate by ATP. CbiA catalyzes first the amidation of the c-carboxylate, and then that of the a-carboxylate.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the CobB/CbiA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.11" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000239">
        <property type="protein sequence ID" value="KKO18701.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18701">
        <property type="protein sequence ID" value="KKO18701"/>
        <property type="gene ID" value="BROFUL_02580"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3203"/>
    <dbReference type="UniPathway" id="UPA00148">
        <property type="reaction ID" value="UER00231"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042242">
        <property type="term" value="F:cobyrinic acid a,c-diamide synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00027">
        <property type="entry name" value="CobB_CbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004484">
        <property type="entry name" value="CbiA_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002586">
        <property type="entry name" value="CobQ/CobB/MinD/ParA_Nub-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011698">
        <property type="entry name" value="GATase_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43873">
        <property type="entry name" value="PTHR43873"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01656">
        <property type="entry name" value="CbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07685">
        <property type="entry name" value="GATase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00379">
        <property type="entry name" value="cobB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="2 3" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CbiA" evidence="4">
        <location>
            <begin position="37"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="domain" description="GATase_3" evidence="5">
        <location>
            <begin position="282"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="3">
        <location>
            <position position="365"/>
        </location>
    </feature>
    <feature type="site" description="Increases nucleophilicity of active site Cys" evidence="3">
        <location>
            <position position="468"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF07685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18701.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="489" mass="54240" checksum="1B059CBE48377703" modified="2015-11-11" version="1">MLIPGKNNYHLLPKTFDYTCCSSVTLITENSNYYPRILIAGTHSGVGKTTITLGLMSVLKDKGYVVQGFKAGPDYIDPSHHTAITERPSRNLDTWLMSRDVCLELFEHAFTGSNMAVIEGVMGLYDGCLDGTESGSTAHLAKVLNTPVVLVVDAKGLSRSAGAIVLGYKHFDREVKIQGVILNRVRSGRHYTSLKNSIENYCEIPVLGYVPFHEEIMLPERHLGLVPSVEQEFSKSAYQKIGKLLSATVDIGKLVDIALSSKNLPSFEKTAFCGVNEQVPCRIAVAMDEAFNFYYQDNLDLLELLGAELTYFSPIYDKYLPADIDGLYIGGGFPELYASMLASNTTMKESIRKAHRNGVVMYGECGGMMYLLEKLTDFKNNSHEMCGILKGTTKMENKRQGLGYVLVKAIHDTILCMKGDTFKAHEFHWSSLHVPVGAQYAYELSKHGDNTPKQDGLIANRVLGSYSHVHFLTEPKLAKQLLHTIADRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUR3</accession>
    <name>A0A0M2UUR3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">NADH dehydrogenase I subunit B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03070</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the complex I 20 kDa subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000285">
        <property type="protein sequence ID" value="KKO18224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18224">
        <property type="protein sequence ID" value="KKO18224"/>
        <property type="gene ID" value="BROFUL_03070"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3795"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048038">
        <property type="term" value="F:quinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006137">
        <property type="entry name" value="NADH_UbQ_OxRdtase-like_20kDa"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006138">
        <property type="entry name" value="NADH_UQ_OxRdtase_20Kd_su"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01058">
        <property type="entry name" value="Oxidored_q6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01957">
        <property type="entry name" value="nuoB_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="1" id="KW-0408">Iron</keyword>
    <keyword evidence="1" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0520">NAD</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Oxidored_q6" evidence="2">
        <location>
            <begin position="21"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU004464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="113" mass="12461" checksum="CFB1DD1876C329F7" modified="2015-11-11" version="1">MAVVAPRYDLARFGAEVFRFSPRQSDLMIVAGTLTYKMASVAKKIYDQMPEPKWVIAMGACAVSGGVYNTYSVVQGLDQVIPVDVYLPGCPPRPEALIHAIMEIQKKIEKEAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUS7</accession>
    <name>A0A0M2UUS7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Glycogen debranching enzyme</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03085</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000285">
        <property type="protein sequence ID" value="KKO18239.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18239">
        <property type="protein sequence ID" value="KKO18239"/>
        <property type="gene ID" value="BROFUL_03085"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3811"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004134">
        <property type="term" value="F:4-alpha-glucanotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004135">
        <property type="term" value="F:amylo-alpha-1,6-glucosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005980">
        <property type="term" value="P:glycogen catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008928">
        <property type="entry name" value="6-hairpin_glycosidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012341">
        <property type="entry name" value="6hp_glycosidase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010401">
        <property type="entry name" value="AGL/Gdb1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032790">
        <property type="entry name" value="GDE_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006451">
        <property type="entry name" value="Glycogen_debranch_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024742">
        <property type="entry name" value="Glycogen_debranch_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10569">
        <property type="entry name" value="PTHR10569"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06202">
        <property type="entry name" value="GDE_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12439">
        <property type="entry name" value="GDE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48208">
        <property type="entry name" value="SSF48208"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01561">
        <property type="entry name" value="gde_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GDE_N" evidence="3">
        <location>
            <begin position="19"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="domain" description="GDE_C" evidence="2">
        <location>
            <begin position="308"/>
            <end position="671"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="268"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="270"/>
            <end position="284"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF06202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF12439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18239.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="679" mass="77285" checksum="8883B07BBDABA025" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV28</accession>
    <name>A0A0M2UV28_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Catalase</fullName>
            <ecNumber evidence="11">1.11.1.6</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="primary">kat</name>
        <name evidence="13" type="ORF">BROFUL_02948</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>2 H2O2 = 2 H2O + O2</text>
            <dbReference type="Rhea" id="RHEA:20309"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="EC" id="1.11.1.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the catalase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.11.1.6" evidence="11"/>
    <dbReference type="EMBL" id="LAQJ01000278">
        <property type="protein sequence ID" value="KKO18349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18349">
        <property type="protein sequence ID" value="KKO18349"/>
        <property type="gene ID" value="BROFUL_02948"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3652"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004096">
        <property type="term" value="F:catalase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042744">
        <property type="term" value="P:hydrogen peroxide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08156">
        <property type="entry name" value="catalase_clade_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018028">
        <property type="entry name" value="Catalase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040333">
        <property type="entry name" value="Catalase_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024708">
        <property type="entry name" value="Catalase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024711">
        <property type="entry name" value="Catalase_clade1/3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011614">
        <property type="entry name" value="Catalase_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002226">
        <property type="entry name" value="Catalase_haem_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010582">
        <property type="entry name" value="Catalase_immune_responsive"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020835">
        <property type="entry name" value="Catalase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11465">
        <property type="entry name" value="PTHR11465"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00199">
        <property type="entry name" value="Catalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06628">
        <property type="entry name" value="Catalase-rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF038928">
        <property type="entry name" value="Catalase_clade1-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00067">
        <property type="entry name" value="CATALASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01060">
        <property type="entry name" value="Catalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56634">
        <property type="entry name" value="SSF56634"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00437">
        <property type="entry name" value="CATALASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00438">
        <property type="entry name" value="CATALASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51402">
        <property type="entry name" value="CATALASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 10 11" id="KW-0349">Heme</keyword>
    <keyword evidence="8 11" id="KW-0376">Hydrogen peroxide</keyword>
    <keyword evidence="7 10 11" id="KW-0408">Iron</keyword>
    <keyword evidence="5 10 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 11 13" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3 11 13" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Catalase" evidence="12">
        <location>
            <begin position="40"/>
            <end position="424"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="87"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="160"/>
        </location>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="10">
        <location>
            <position position="370"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000720"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005329"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR038928-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR038928-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU000498"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM01060"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO18349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="515" mass="58911" checksum="3A49CB975A4E18F4" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV45</accession>
    <name>A0A0M2UV45_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Two-component sensor kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01357</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000140">
        <property type="protein sequence ID" value="KKO19928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19928">
        <property type="protein sequence ID" value="KKO19928"/>
        <property type="gene ID" value="BROFUL_01357"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="16"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="210"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="3">
        <location>
            <begin position="290"/>
            <end position="514"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="517" mass="58613" checksum="24FF112DC9CEFA3E" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVB0</accession>
    <name>A0A0M2UVB0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative cytochrome c</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02873</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000270">
        <property type="protein sequence ID" value="KKO18439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18439">
        <property type="protein sequence ID" value="KKO18439"/>
        <property type="gene ID" value="BROFUL_02873"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023155">
        <property type="entry name" value="Cyt_c-552/4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036280">
        <property type="entry name" value="Multihaem_cyt_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13435">
        <property type="entry name" value="Cytochrome_C554"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48695">
        <property type="entry name" value="SSF48695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cytochrome_C554" evidence="1">
        <location>
            <begin position="107"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="263" mass="29817" checksum="D0D76C95C4132EF9" modified="2015-11-11" version="1">MTCHIDEDKLKAAHPNVKDFPFDIYGCTVCHGGIGRALSEEVAHEGMHYHKRQMELRITSAETMFGFWSELATLTPEESDPSLRLEMGDFKKYSITGDKAVYVGSQKCLKCHKGLTSPHVERWQRIKFKTFEHVKNAPDYIAGNEEYRKTCLKCHTTGYDEATGKYSEEGVTCEACHGAGEVFSYFMEIGKAPEGQKIAKVGTFGTPYNVCGPCHHTRNHEMRLKFFQERGGSDEWFFPQHTTPYKTGFSKNDEAAVPLPKMH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVI4</accession>
    <name>A0A0M2UVI4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02290</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO18996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18996">
        <property type="protein sequence ID" value="KKO18996"/>
        <property type="gene ID" value="BROFUL_02290"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="67" mass="7392" checksum="92B26368A5D00299" modified="2015-11-11" version="1">MRDAYFMKSLFSALLCYVVLLAILIIFVAVTGIMGALFLLTIGVVFLVYFYGGFKKITVLGGKGRTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVP4</accession>
    <name>A0A0M2UVP4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02242</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19061">
        <property type="protein sequence ID" value="KKO19061"/>
        <property type="gene ID" value="BROFUL_02242"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glycos_transf_1" evidence="1">
        <location>
            <begin position="175"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="361" mass="41831" checksum="C0321718143EF93F" modified="2015-11-11" version="1">MKILYIYSDYKWTGPSQPIVELCNFMSEKAGVCLLMSTPKRPENRFVAQVRTDRIHLMQGLQKRDGIGSLIKNRRLILQSIRQVKPDVIHFFRERDLATLPGNSKNFVKVFSSLKSAYPGRLKRILWNTANIITVFQKKLHDELLRNSGKVVYIKPWLDLQQIPAHHQNVRPAFGLHAEDFVVGLVMRVQPYRRFDLIIETAKLVKESKKRIKFLLFGKGPYLQKLVMDPLKKYGLEAVIIPGGYRKDDYWDALYSFDIMLYTVAGSDGTARALRQCQAIGKPIVCLHDDFMQEIVHDGVNGFVVRHDPAEIMKKIDALYSERNMLIDFSKRSEHQGKTYDLNKIGQEIYALYESTLRRKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVR3</accession>
    <name>A0A0M2UVR3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01324</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000139">
        <property type="protein sequence ID" value="KKO19932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19932">
        <property type="protein sequence ID" value="KKO19932"/>
        <property type="gene ID" value="BROFUL_01324"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1639"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071704">
        <property type="term" value="P:organic substance metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001539">
        <property type="entry name" value="Peptidase_U32"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032525">
        <property type="entry name" value="Peptidase_U32_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01136">
        <property type="entry name" value="Peptidase_U32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16325">
        <property type="entry name" value="Peptidase_U32_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01276">
        <property type="entry name" value="PEPTIDASE_U32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_U32_C" evidence="1">
        <location>
            <begin position="330"/>
            <end position="410"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF16325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19932.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="413" mass="47033" checksum="44300D6551F205CA" modified="2015-11-11" version="1">MIRKGDISVKKPEIVAPAGDFEKLRTAIEFGADAVYAGGEGFNLRMGASNLTLQEIGEAADWVHQRGRKIYIALNIFARNYHISGIRSYLKRLAAIPVDAVIISDPGVFLTMREIAPHVPIHLSTQANTTNAQSVEFWRRQGVKRVVLARELTLGEIREITDRSQIETEVFVHGAMCMSYSGRCLLSGFMANRHANLGDCSHSCRWHYVLKEEKRPLESYPIVEDESGTFILSSKDLCTIQYIPELFHAGVTAWKIEGRMKSPYYVAAVTRVYREALDRYCADPHTYVCDQRWLSELEKVSHREYGVGFFFGNQGYQSQTTHPGDRYLKEYDYLGTIQNVLPDDMAEVVVKNRISSNTPIEIMGRRLSEDFTQVLLDIRNEYHESIEVAQAGQKVLIKMSRPVEKYFMLRKCG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVU4</accession>
    <name>A0A0M2UVU4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01627</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19695">
        <property type="protein sequence ID" value="KKO19695"/>
        <property type="gene ID" value="BROFUL_01627"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2008"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043504">
        <property type="entry name" value="Peptidase_S1_PA_chymotrypsin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001940">
        <property type="entry name" value="Peptidase_S1C"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00834">
        <property type="entry name" value="PROTEASES2C"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="SSF50494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="238" mass="25838" checksum="20CB4FB9CD1FC9FC" modified="2015-11-11" version="1">MKRIPLFCSIFLTIICPPFLFHGVFARETTSNRRTPTVIAVEKVGPAVANISTERLITARHADPFFGSRSELFDQFFNDFFGQGQKQTVERPLGSGVIIDEDGYIVTNEHVVSRASKIKVRLSDGKDFEASMISSDPISDLAVLKINSPTPLPYVKMGTSKDLMIGESVIALGNPFGLENSITTGVLSAKNRTLTFNSEYGDIKYDGLIQTDALINPGNSGGPLINIDGELIGINAPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVY4</accession>
    <name>A0A0M2UVY4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Radical SAM core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01073</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20223">
        <property type="protein sequence ID" value="KKO20223"/>
        <property type="gene ID" value="BROFUL_01073"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1338"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Radical SAM core" evidence="1">
        <location>
            <begin position="1"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="229" mass="25769" checksum="0FE75E8BE7BAF9B7" modified="2015-11-11" version="1">MQGKYRLPDVVHMLSNLSGLGRLRLSSVEINEITTDLIDLFVHTKKICPHLHIPLQSGDDVILRRMNRKYTSSQYIDILEGIRAKMHVPSFTTDVIVGFPGEEEAHFQNTMDLCEKAGFGRIHIFPYSAREGTPAAKMKDHCQPQTIRQRKARLEAAAKNLAFSYKKQLVNSYAEVLVEAERDPETNQLCGYSERYVKILFDGPDTMKNSIVSVRIGEVAPSFVSGSLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW25</accession>
    <name>A0A0M2UW25_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02149</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19166.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19166">
        <property type="protein sequence ID" value="KKO19166"/>
        <property type="gene ID" value="BROFUL_02149"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2680"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19166.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1332" mass="148321" checksum="62EFBFD11577D3DC" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW27</accession>
    <name>A0A0M2UW27_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02583</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000239">
        <property type="protein sequence ID" value="KKO18704.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18704">
        <property type="protein sequence ID" value="KKO18704"/>
        <property type="gene ID" value="BROFUL_02583"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18704.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="260" mass="29916" checksum="6AB3BA5A34A58D4B" modified="2015-11-11" version="1">MRTDPGSSGCGKNIGFVNDVCADGICCFTSIPRNQNHLGVTKVFLKRRNASYGIKLLYTALQSKDIVFNPCKCLEFYLRGLITPTGHSIGALLRCGIFGKKYRPYTCNEFPDKPDSFMHDIPAPCIYNEYLAPEDYITLKHKHIFRLYFAIRDDQKFLKKIAPGFTAEEIRKKLNLCENVGKISAIWDEKPAEYFLLEAPKSACVLYTSKVHPKIESIKQAYHLWQGHIESWLERHYGIKWQENLNHAMKQESEKLKGMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW37</accession>
    <name>A0A0M2UW37_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01212</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the DinB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000132">
        <property type="protein sequence ID" value="KKO20062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20062">
        <property type="protein sequence ID" value="KKO20062"/>
        <property type="gene ID" value="BROFUL_01212"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007837">
        <property type="entry name" value="DinB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034660">
        <property type="entry name" value="DinB/YfiT-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05163">
        <property type="entry name" value="DinB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109854">
        <property type="entry name" value="SSF109854"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="180"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="203" mass="23350" checksum="0029AEB4676A5166" modified="2015-11-11" version="1">MEYQFLVDTYETERVKTLGVWSMFKDEDMRVRPRLHDRRGRNALEHMVHQCVSENLWFRNMLEIDVGAPPLPKEETRLEFIKRYAEDSGKRLTALQKTDKAWWEKVSVFFDTKRSRAWIMTRRIAHSAHHRGQLTVMLRMLGREIYSTYGPSADTGGLMIHNAPTIYAYPSIEALIDGETKGGAKAPLPGPGDKPCTERPDAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW93</accession>
    <name>A0A0M2UW93_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Malto-oligosyltrehalose synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02515</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000236">
        <property type="protein sequence ID" value="KKO18774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18774">
        <property type="protein sequence ID" value="KKO18774"/>
        <property type="gene ID" value="BROFUL_02515"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3123"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd11336">
        <property type="entry name" value="AmyAc_MTSase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006047">
        <property type="entry name" value="Glyco_hydro_13_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012767">
        <property type="entry name" value="Trehalose_TreY"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00128">
        <property type="entry name" value="Alpha-amylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00642">
        <property type="entry name" value="Aamy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02401">
        <property type="entry name" value="trehalose_TreY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aamy" evidence="1">
        <location>
            <begin position="24"/>
            <end position="510"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="993" mass="116070" checksum="A1A4375D097D7A3B" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWA1</accession>
    <name>A0A0M2UWA1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA topoisomerase (ATP-hydrolyzing)</fullName>
            <ecNumber evidence="2">5.6.2.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">gyrB</name>
        <name evidence="4" type="ORF">BROFUL_02507</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP-dependent breakage, passage and rejoining of double-stranded DNA.</text>
            <dbReference type="EC" id="5.6.2.2"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.2" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000235">
        <property type="protein sequence ID" value="KKO18784.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18784">
        <property type="protein sequence ID" value="KKO18784"/>
        <property type="gene ID" value="BROFUL_02507"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3114"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003918">
        <property type="term" value="F:DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006265">
        <property type="term" value="P:DNA topological change"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.670">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002288">
        <property type="entry name" value="DNA_gyrase_B_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013760">
        <property type="entry name" value="Topo_IIA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013759">
        <property type="entry name" value="Topo_IIA_B_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006171">
        <property type="entry name" value="TOPRIM_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00986">
        <property type="entry name" value="DNA_gyraseB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56719">
        <property type="entry name" value="SSF56719"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50880">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Toprim" evidence="3">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18784.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="313" mass="36285" checksum="B9880B94D421526E" modified="2015-11-11" version="1">MTDADIDGAHIRTLLLTFFFRQMIDLIEKGHIYIAQPPLYKVTKNKKQEYIYDDRELQKKLIVLGGEGTVMEFQGKRKEGLNNSKLTKLLHLLVQMEEYVKILRKKGMSLDKFLGLRHKKNGNLPLYKVTCKDEVSYIFSEEEMETFIKGKQQAEGRELEIREESDAEESREDVLEVIEYHESREIEKTIREIEAYGFTADEYFAGHNGDSARYKLVSEDTEISVHSLNEVLSRIREIGRKGLEIQRYKGLGEMNAEELAVTTMNVDTRTLLKVKVEDAAKADSIFSTLAGKDVQRRREFIEKHALEVRNLDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWD7</accession>
    <name>A0A0M2UWD7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Anthranilate phosphoribosyltransferase</fullName>
            <ecNumber evidence="3">2.4.2.18</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3 6" type="primary">trpD</name>
        <name evidence="6" type="ORF">BROFUL_01144</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the transfer of the phosphoribosyl group of 5-phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>diphosphate + N-(5-phospho-beta-D-ribosyl)anthranilate = 5-phospho-alpha-D-ribose 1-diphosphate + anthranilate</text>
            <dbReference type="Rhea" id="RHEA:11768"/>
            <dbReference type="ChEBI" id="CHEBI:16567"/>
            <dbReference type="ChEBI" id="CHEBI:18277"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="EC" id="2.4.2.18"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="3">Binds 2 magnesium ions per monomer.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 2/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the anthranilate phosphoribosyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.18" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000123">
        <property type="protein sequence ID" value="KKO20142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20142">
        <property type="protein sequence ID" value="KKO20142"/>
        <property type="gene ID" value="BROFUL_01144"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1415"/>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00041"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004048">
        <property type="term" value="F:anthranilate phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000162">
        <property type="term" value="P:tryptophan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1030.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00211">
        <property type="entry name" value="TrpD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005940">
        <property type="entry name" value="Anthranilate_Pribosyl_Tfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000312">
        <property type="entry name" value="Glycosyl_Trfase_fam3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017459">
        <property type="entry name" value="Glycosyl_Trfase_fam3_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036320">
        <property type="entry name" value="Glycosyl_Trfase_fam3_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035902">
        <property type="entry name" value="Nuc_phospho_transferase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43285">
        <property type="entry name" value="PTHR43285"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02885">
        <property type="entry name" value="Glycos_trans_3N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00591">
        <property type="entry name" value="Glycos_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47648">
        <property type="entry name" value="SSF47648"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52418">
        <property type="entry name" value="SSF52418"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01245">
        <property type="entry name" value="trpD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="3" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="1 3 6" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3 6" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="domain" description="Glycos_trans_3N" evidence="5">
        <location>
            <begin position="5"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="Glycos_transf_3" evidence="4">
        <location>
            <begin position="75"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphoribosylpyrophosphate binding" evidence="3">
        <location>
            <begin position="84"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphoribosylpyrophosphate binding" evidence="3">
        <location>
            <begin position="91"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphoribosylpyrophosphate binding" evidence="3">
        <location>
            <begin position="109"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="89"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="112"/>
        </location>
        <ligand>
            <name>anthranilate</name>
            <dbReference type="ChEBI" id="CHEBI:16567"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="121"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="167"/>
        </location>
        <ligand>
            <name>anthranilate</name>
            <dbReference type="ChEBI" id="CHEBI:16567"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="226"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00591"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="340" mass="36044" checksum="8F8A0A8DC120EE36" modified="2015-11-11" version="1">MPVKKAITKLVNNQHLTVEESLAAMTHVMEGNATDAQIASFITALRMKGETVDEITGCTLAMRKRAVKLVAGTDIVVDTCGTGGDARNTFNISTAAAFVVAGAGLKVAKHGNRAFSSQCGSADVLMRLGVNIEANVKTVEKCLAVANIGFLFAPLLHQAMKYVVGPRKEIGIRTIFNIIGPLANPAGATHRVLGVYSEQMTLIMAEALKMLGDKHAFVVHGLDGLDEITTTTRTKVCELAGHTIKSYYLNPEEFGIKKSKLSDLTVHTAEESAAAIRGILEGVHSPKRDVVLVNAAAAIIAGGLTGNFAEGIEIASRSIDTGSAKETLKKLMETSWQSSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWF6</accession>
    <name>A0A0M2UWF6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02500</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18839.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18839">
        <property type="protein sequence ID" value="KKO18839"/>
        <property type="gene ID" value="BROFUL_02500"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="18"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18839.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="44" mass="4520" checksum="E06016256F06CD3A" modified="2015-11-11" version="1">MVSVGVDRLTEEVKGVSTLHPAGLPNGKQPHPKNLSLVAAGTIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWF7</accession>
    <name>A0A0M2UWF7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNA 2',3'-cyclic phosphodiesterase</fullName>
            <shortName evidence="1">RNA 2',3'-CPDase</shortName>
            <ecNumber evidence="1">3.1.4.58</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01961</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'-phosphomonoester.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 3'-end 2',3'-cyclophospho-ribonucleotide-RNA + H2O = a 3'-end 2'-phospho-ribonucleotide-RNA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:11828"/>
            <dbReference type="Rhea" id="RHEA-COMP:10464"/>
            <dbReference type="Rhea" id="RHEA-COMP:17353"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:83064"/>
            <dbReference type="ChEBI" id="CHEBI:173113"/>
            <dbReference type="EC" id="3.1.4.58"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the 2H phosphoesterase superfamily. ThpR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.4.58" evidence="1"/>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19301">
        <property type="protein sequence ID" value="KKO19301"/>
        <property type="gene ID" value="BROFUL_01961"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004113">
        <property type="term" value="F:2',3'-cyclic-nucleotide 3'-phosphodiesterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008664">
        <property type="term" value="F:2'-5'-RNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01940">
        <property type="entry name" value="RNA_CPDase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009097">
        <property type="entry name" value="Cyclic_Pdiesterase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004175">
        <property type="entry name" value="RNA_CPDase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35561">
        <property type="entry name" value="PTHR35561"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55144">
        <property type="entry name" value="SSF55144"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02258">
        <property type="entry name" value="2_5_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="short sequence motif" description="HXTX 1" evidence="1">
        <location>
            <begin position="42"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="HXTX 2" evidence="1">
        <location>
            <begin position="129"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="1">
        <location>
            <position position="42"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01940"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="187" mass="21223" checksum="7AC419F8A3F18ADD" modified="2015-11-11" version="1">MNVRLFVAVEITEEIRKKLAAFQDELKRVDADAGWVAPENLHITVKFIGVLDEEKMGAVTAIIKDAVAHIKPFDLQFRGVGTFPTEKNPRVVFADVIDTGRVLAKVHERLDNQFMALSVKREDRKFDAHLTVGRIKTRRNVKRLLEHLNSYQGFDFGSEHVTQVVLMKSDLLPDGPVYTKLQSVDLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWH4</accession>
    <name>A0A0M2UWH4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01359</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000140">
        <property type="protein sequence ID" value="KKO19930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19930">
        <property type="protein sequence ID" value="KKO19930"/>
        <property type="gene ID" value="BROFUL_01359"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="49" mass="5423" checksum="762E11CBD43C335E" modified="2015-11-11" version="1">MFVVGRTFADIRFECHLMSWTANASPLRVIANKVAEGLIKTGKNTQDGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWI1</accession>
    <name>A0A0M2UWI1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">4-aminobutyrate aminotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01986</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19326">
        <property type="protein sequence ID" value="KKO19326"/>
        <property type="gene ID" value="BROFUL_01986"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00610">
        <property type="entry name" value="OAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000521">
        <property type="entry name" value="Transaminase_4ab_Lys_Orn"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00600">
        <property type="entry name" value="AA_TRANSFER_CLASS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="1 2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="449" mass="49515" checksum="07B4A52CB188638F" modified="2015-11-11" version="1">MSMKNYPCIRTKLPGPHATRYLEKENKFVSPSSTKGYPLVIKSAKGMVVTDVDNNTFLDFTAGIAVCNTGHNHDQIVSAINSQAETLVHMSGADFYNPLHIELAEKLSAICPGTHTKKAFFGNSGAESVEAAFKLARYHTRRPIAIAFYNAFHGRTMGALSLTASKLNQRKHFLPLIPEVVHIPYAYCYRCHYGLAPDTCHMACVTWIREELFKTKVSPDDVAAIFVEIIQGEGGYIVPPKEFHKALYQLTRDYNILYVADEVQSGMGRTGKMFASEHFDIIPDIITLAKGIASGLPLSATVAREEIMNWAPGSHASTFGGNPVSCQAALTTIKLLENGLIENAAKQGAYLIQELKKLERTYPIIGDVRGLGLMLAVELIKDRETKAYAPEERDTIVQKAFSKGLLLLGCGRSAIRFCPPLILSKDDADVALSILEECIKETLNYRQVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWJ0</accession>
    <name>A0A0M2UWJ0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01951</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000200">
        <property type="protein sequence ID" value="KKO19336.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19336">
        <property type="protein sequence ID" value="KKO19336"/>
        <property type="gene ID" value="BROFUL_01951"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19336.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="155" mass="17390" checksum="9DBBFF2422CCC088" modified="2015-11-11" version="1">MKFDRITYSQLSAKQQETYNFQKVAASLADYGFNCIKLADDWRGADFLAYHKDGNDTLRVQLKGRITVAKQYCGKGLYIVFPVPGGWCLVPHDTLVSLVGRTTGWLNTASWLTRGLYSATRPSKELMVSLQPYIIGNSNRLETEELSPADADFGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWK5</accession>
    <name>A0A0M2UWK5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Y1_Tnp domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02404</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000230">
        <property type="protein sequence ID" value="KKO18889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18889">
        <property type="protein sequence ID" value="KKO18889"/>
        <property type="gene ID" value="BROFUL_02404"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2989"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1290">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002686">
        <property type="entry name" value="Transposase_17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036515">
        <property type="entry name" value="Transposase_17_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM01321">
        <property type="entry name" value="Y1_Tnp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143422">
        <property type="entry name" value="SSF143422"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Y1_Tnp" evidence="1">
        <location>
            <begin position="22"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="217" mass="25503" checksum="CAFB0B86E0E5F0E2" modified="2015-11-11" version="1">MNYDPEKHRRRSIRLKGYDYTRPGAYFVTICTEGRVCLFGNISGETMQLNAFGRIVQTHWNDLPHHYPQVKLDAFVIMPNHVHGIIILTEIDMVGAGLKPAPTIKQHGLPEIVRALKTFSARRVNELRNTPGVSLWQRNYYDHIIRNERALNIIRRYILYNPLMWAYDMDNPDRHPLSTEKMKSGMKQKCGFTDEELDFIIDYDIKYRMGRETDDEM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWL2</accession>
    <name>A0A0M2UWL2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PLD phosphodiesterase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01072</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20222.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20222">
        <property type="protein sequence ID" value="KKO20222"/>
        <property type="gene ID" value="BROFUL_01072"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025202">
        <property type="entry name" value="PLD-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001736">
        <property type="entry name" value="PLipase_D/transphosphatidylase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13091">
        <property type="entry name" value="PLDc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00155">
        <property type="entry name" value="PLDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50035">
        <property type="entry name" value="PLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="domain" description="PLD phosphodiesterase" evidence="2">
        <location>
            <begin position="143"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20222.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="203" mass="23477" checksum="01CD0998165F7023" modified="2015-11-11" version="1">MQELKYAIKYLKHVITKVSYIVILVLGIFHNSFLFGLPADDVIPLTDGDYYPQVHQALATAKKSIMCVMYMADINPKYKQGWEYNLVNDLINAHRRGISVTVIFDQNVMFWETGKKGKKTERKSENAYELLKKNGVPVYYDSIDRVTHSKIMIIDDYITIVGSTNWTYSALRKNHEASVLIKSRSVAEEFLEKLRTISKYQPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWM8</accession>
    <name>A0A0M2UWM8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ribose-5-phosphate isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01088</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LacAB/RpiB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20237.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20237">
        <property type="protein sequence ID" value="KKO20237"/>
        <property type="gene ID" value="BROFUL_01088"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1354"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016861">
        <property type="term" value="F:intramolecular oxidoreductase activity, interconverting aldoses and ketoses"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1400.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004785">
        <property type="entry name" value="RpiB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003500">
        <property type="entry name" value="RpiB_LacA_LacB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036569">
        <property type="entry name" value="RpiB_LacA_LacB_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02502">
        <property type="entry name" value="LacAB_rpiB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005384">
        <property type="entry name" value="RpiB_LacA_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89623">
        <property type="entry name" value="SSF89623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01120">
        <property type="entry name" value="rpiB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00689">
        <property type="entry name" value="rpiB_lacA_lacB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="2">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR005384-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20237.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="150" mass="16559" checksum="AF957FB3D24B6486" modified="2015-11-11" version="1">MKIALASDHRGFDFKKRVATMLTQAGHTIKDFGTDKNNESVDYPDYGLYAARAVGSGECERGILICGTGIGMSLVANKVKGVRAACCHNLYTVEMSRRHNDSNVLCIGADIIDEELLEQKVNLWLETPFEGGRHARRVEKIMEVENGEGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWW9</accession>
    <name>A0A0M2UWW9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01845</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000190">
        <property type="protein sequence ID" value="KKO19466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19466">
        <property type="protein sequence ID" value="KKO19466"/>
        <property type="gene ID" value="BROFUL_01845"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="577" mass="65868" checksum="7D81227895570384" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWZ9</accession>
    <name>A0A0M2UWZ9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha-D-kanosaminyltransferase</fullName>
            <ecNumber evidence="2">2.4.1.301</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">kanE</name>
        <name evidence="2" type="ORF">BROFUL_00898</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.301" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000109">
        <property type="protein sequence ID" value="KKO20377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20377">
        <property type="protein sequence ID" value="KKO20377"/>
        <property type="gene ID" value="BROFUL_00898"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glycos_transf_1" evidence="1">
        <location>
            <begin position="3"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="99" mass="11197" checksum="564455995BE45BCE" modified="2015-11-11" version="1">MLNISKDKKIILYVGRLTELKGIEYLLEALNKLSKDGFTFVAIGHGNLKNRVEKYCKDNEIDCRLTGIIPNSDLPSYYKLATVFVLRKTGAGFLGCRRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX04</accession>
    <name>A0A0M2UX04_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00903</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000109">
        <property type="protein sequence ID" value="KKO20382.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20382">
        <property type="protein sequence ID" value="KKO20382"/>
        <property type="gene ID" value="BROFUL_00903"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028098">
        <property type="entry name" value="Glyco_trans_4-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13439">
        <property type="entry name" value="Glyco_transf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_trans_4-like_N" evidence="2">
        <location>
            <begin position="57"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="domain" description="Glycos_transf_1" evidence="1">
        <location>
            <begin position="254"/>
            <end position="365"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20382.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="370" mass="42543" checksum="C08C96220D685C69" modified="2015-11-11" version="1">MKILIIHNFYQSSSPSGEDIVFKNEVELLRKNRINVITYEKYNDDIANDSNRLKLAFRTIWSRETYKELKTLITKEKPDIAHFHNIWYQISPSAYYACKDAGIPVVQTLHNFRLFCASGLLMRVGKVCEECIGRMPWKGAFYGCYRNSRLYSLPVALTQVIHRFIGTWTNKVDAYIALTNFGRNKFIEHGLPAEKIFVKPNFLLNSHNPPLAGSEIKFCVQPVGAIHELPLDIINGQRLSEQYQSENNLSKGDRKFSHGNYIVFLGRISYEKGIEILVDAFKMLRSMTHKEVFLKIVGDGPLKKQIEDRVGIERIPNIEFTGRKSHSESMEILKDALFMVTSSIWYEMFPMTVLETFSCGKAVIAPRLGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX29</accession>
    <name>A0A0M2UX29_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 13">Tetraacyldisaccharide 4'-kinase</fullName>
            <ecNumber evidence="3 13">2.7.1.130</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12 13">Lipid A 4'-kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">lpxK</name>
        <name evidence="14" type="ORF">BROFUL_00857</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 13">Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 13">Glycolipid biosynthesis; lipid IV(A) biosynthesis; lipid IV(A) from (3R)-3-hydroxytetradecanoyl-[acyl-carrier-protein] and UDP-N-acetyl-alpha-D-glucosamine: step 6/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="13">Belongs to the LpxK family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.130" evidence="3 13"/>
    <dbReference type="EMBL" id="LAQJ01000105">
        <property type="protein sequence ID" value="KKO20432.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20432">
        <property type="protein sequence ID" value="KKO20432"/>
        <property type="gene ID" value="BROFUL_00857"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1083"/>
    <dbReference type="UniPathway" id="UPA00359">
        <property type="reaction ID" value="UER00482"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009029">
        <property type="term" value="F:tetraacyldisaccharide 4'-kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009245">
        <property type="term" value="P:lipid A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00409">
        <property type="entry name" value="LpxK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003758">
        <property type="entry name" value="LpxK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42724">
        <property type="entry name" value="PTHR42724"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02606">
        <property type="entry name" value="LpxK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00682">
        <property type="entry name" value="lpxK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 13" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9 13 14" id="KW-0418">Kinase</keyword>
    <keyword evidence="6 13" id="KW-0441">Lipid A biosynthesis</keyword>
    <keyword evidence="5 13" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="11 13" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="8 13" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 13" id="KW-0808">Transferase</keyword>
    <feature type="binding site" evidence="13">
        <location>
            <begin position="5"/>
            <end position="12"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00016436"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00029757"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KKO20432.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="303" mass="34232" checksum="1740CB1420DDCA3A" modified="2015-11-11" version="1">MGNITLGGTGKTPVIEYIAHYLQKKGKRVAILSRGYAATIEQEPDALHKNFCNDEHLVFQENIPDVPHLIHKDRVKSGLRAIGQFQAQYLLLDDGFQHLRLARDINMVTIDALNPFGFGYTIPRGMLREPLEELRRADLFVLTHTDQCGHDKMQSIKERLREIAGHVPVVETVHKPIGLESSAGTEMTDIRVLQGKRVFAFCAIGNPESFRKSIEGLGGKLLCFHAFPDHHVYTASELRALSAEAKRVSPEVIMITQKDRVKIKNVGESWDFPLWTLKIEIRITKGCEIFEKKMNALLNGKEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXB6</accession>
    <name>A0A0M2UXB6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Metalloproteinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_00744</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000095">
        <property type="protein sequence ID" value="KKO20522.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20522">
        <property type="protein sequence ID" value="KKO20522"/>
        <property type="gene ID" value="BROFUL_00744"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.940"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031012">
        <property type="term" value="C:extracellular matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04278">
        <property type="entry name" value="ZnMc_MMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033739">
        <property type="entry name" value="M10A_MMP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024079">
        <property type="entry name" value="MetalloPept_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001818">
        <property type="entry name" value="Pept_M10_metallopeptidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021190">
        <property type="entry name" value="Pept_M10A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006026">
        <property type="entry name" value="Peptidase_Metallo"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00413">
        <property type="entry name" value="Peptidase_M10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00138">
        <property type="entry name" value="MATRIXIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00235">
        <property type="entry name" value="ZnMc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644068" evidence="5">
        <location>
            <begin position="25"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="domain" description="ZnMc" evidence="6">
        <location>
            <begin position="84"/>
            <end position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20522.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="418" mass="44333" checksum="7C695B5DC2D12420" modified="2015-11-11" version="1">MRRMFGIAAVCIAVVGSIGTNSFALEEEGVSAVYEGQQYIVSTNNDTIFRVEPISAAAESFACTPDSPCLYDDLPFGIASYVTSGGSWPVTGFTYSVVGTGTGDVSGAAERGIIGQAFGLWSNVTRVYPQEVLDDGNCSGDIRISWGVGNHGDGYPFDGAGGVLAHAFYPPPVNAGCIAGDIHFDDAETWVSPTFGGAGIDLLTVAAHEMGHALGLGHSADPNALMYPFYSARRAYLSHDDIRGIVAIYGNRSNDCVIQLELLDTVPPGSGSFRILENGVTVSLREKGTGLLSTRILPRAANLGNSVFADVDGVLSRNAFGAQFDGFWWHTGDLYRAQFSLAATREDIDQVQVSIALANNILAGDSETVRVSLNGQVLGDIVINPGDVAKNATYNVHFVNPVFRARAFGENIYNDGKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXE1</accession>
    <name>A0A0M2UXE1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">FGE-sulfatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00736</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000092">
        <property type="protein sequence ID" value="KKO20542.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20542">
        <property type="protein sequence ID" value="KKO20542"/>
        <property type="gene ID" value="BROFUL_00736"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016187">
        <property type="entry name" value="CTDL_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005532">
        <property type="entry name" value="SUMF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042095">
        <property type="entry name" value="SUMF_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03781">
        <property type="entry name" value="FGE-sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56436">
        <property type="entry name" value="SSF56436"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FGE-sulfatase" evidence="2">
        <location>
            <begin position="124"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="291"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="308"/>
            <end position="335"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20542.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="347" mass="38971" checksum="4ED4D521CFF68F08" modified="2015-11-11" version="1">MDDKPALALRVTTEVKASVDEIIQPLIEQEQGNQGKLLLIDSLEQSLPLVSEAERQNLVQETLRIMLLECGERDCEVIYRAQILLTNMELKPLEPGGILYELLDLEHAAERQRAFLNDPANCLEWIGVQGGTFLMGDDNHGDNERPAHQVKVDSFLMAKHPVTNRMLANFPLGKKYPNYGGDSHPAVSNTWFEAYYCALWLNARLPTEAEWEYAARGGESARRPQYYFGDNPEDLTSHAWFGEADKPHAHAVDEVNPHAGAENLNSLGLANMHGNVYEWCADWYDADYYKSSPKEEPKGPEKGSSRVMRGGSWTSVAQNCRSANRSSNAPDNRFNRVGIRLTRSVNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXE8</accession>
    <name>A0A0M2UXE8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00517</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the FldB/FldC dehydratase alpha/beta subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000071">
        <property type="protein sequence ID" value="KKO20758.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20758">
        <property type="protein sequence ID" value="KKO20758"/>
        <property type="gene ID" value="BROFUL_00517"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.645"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010327">
        <property type="entry name" value="FldB/FldC_alpha/beta"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06050">
        <property type="entry name" value="HGD-D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20758.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="361" mass="41830" checksum="5C1F78574DFCF0DD" modified="2015-11-11" version="1">MNLKFNDHLLPTLPVMEDLPLDRLMGITSTIPIEIVFAAGYLPIDLNNIFICDRQAYKMVEDAESSGLPRNICAWIKGIYSAARKYHIRKIISVIQGDCSNNQALMEIFQSEEIETIPFAYPHAKTDRQFLHNQLTMLANALGIDYGRAEEMKNRLDTVRSYVHEIDRLTWAENTVTGEENHIWTVSTSDLMGDYGVFEERAVKFLRSVREREPIQHDLRIGIVGIPPICEDLYPFLSSIGAHVVYNEIQRQFSMPYPTKTLVEQYSQYTYPYDIFSRLEDIQQEIKHRNVMGLIHYVQSFCHRHIHDKIIRKQIHLPILTLDCDRPGPLDGAMKTRIEAFVEMLKYHESGMPVESRIEIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXI2</accession>
    <name>A0A0M2UXI2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01603</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0175 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19671">
        <property type="protein sequence ID" value="KKO19671"/>
        <property type="gene ID" value="BROFUL_01603"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005368">
        <property type="entry name" value="UPF0175"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03683">
        <property type="entry name" value="UPF0175"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="99" mass="11399" checksum="4C2E13A7727C957D" modified="2015-11-11" version="1">MATKTLSIRIDDDDYKFLSVLAKEEKEDVSKTVRELVDLGRVMLAIEKYKKSEASIEKAAKIAGVSISKMMEIFKEYSVEANLEYEDYLKGLKSIRKVW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXQ8</accession>
    <name>A0A0M2UXQ8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00620</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20637">
        <property type="protein sequence ID" value="KKO20637"/>
        <property type="gene ID" value="BROFUL_00620"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.785"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003423">
        <property type="entry name" value="OMP_efflux"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010131">
        <property type="entry name" value="RND_efflux_OM_lipoprot_NodT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02321">
        <property type="entry name" value="OEP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01845">
        <property type="entry name" value="outer_NodT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0564">Palmitate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1134">Transmembrane beta strand</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="486" mass="54306" checksum="F89F48E5915A9B55" modified="2015-11-11" version="1">MEKFKNTVVFGCVVTCLLLAGCQTTKSTEDSPIKPIPESFASTKDSTNSAMIDWRQFFSDATLIGLIDTALKNNLDVLMTLQKIEIARADLKLRKGALLPEISGGGSVAQRRFGRYTMDGAGNRATEITPGQIVPDDLPDYFIGLQTTWEVDIWGKLRNKKKAAFARYLSSIEGKNIVLTNLIAEIAITYYELLSLDTELEIIKETIHLQENALSIVAIQKQAAAANELAVQQFEAQLLNSRALEVEFLQRITVCENRINYLLGRFPQPIMRKKSILPKEIPAQVKVGIPSDLLENRPDIKQAEFELMATKADVKSAKKAFYPSFNITGAMGFQAFNTSYLFRSPESIAYAVMGTLTAPIINRSAIQAQFKTAQAKQVEALYQYQKAIINGYIEVYNEMHNIKNLERAYNLITKKVTALTQSIEISSELFKTGRANYLEVLITQQNALQSKLELVSTKQQQFNASVNIYKALGGGWRQMKEKPTQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXU4</accession>
    <name>A0A0M2UXU4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DDE_5 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00887</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000108">
        <property type="protein sequence ID" value="KKO20390.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20390">
        <property type="protein sequence ID" value="KKO20390"/>
        <property type="gene ID" value="BROFUL_00887"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039365">
        <property type="entry name" value="IS701-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038721">
        <property type="entry name" value="IS701-like_DDE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33627">
        <property type="entry name" value="PTHR33627"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13546">
        <property type="entry name" value="DDE_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DDE_5" evidence="1">
        <location>
            <begin position="5"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13546"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20390.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="337" mass="39082" checksum="5D4642DD903B4497" modified="2015-11-11" version="1">MGEYKWDEEFVASRHKEEVSRLLSDPDGVVSVDSSEVVKKGKDSVAVARQYCGRLGKIENCQSGVYVAYTSTKGYALLDRRLFVPEKWFGQEYKERRKKCKMPQDLVFKKKPELAHEMIQEVCKSGLFPFRWVTCDTIFGNSPEFLQNLPEHVFYLAEIAKNRKVWMKSEESRDRKKRPSVSVSDIGKDENLAWKLTKLAEGAKGPIVGFTSRVRVYADDPGKAENERWLFLRKEPTTEEITYYFSNASLDTSLEEMTRVCTLRWPIEQSFQEGKSELGMADYEHRSWTAWHRHMTFVFLAQLFLLRIQDVFKKNDSFNITTSTDVAGGRLASYPIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXV7</accession>
    <name>A0A0M2UXV7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00876</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000106">
        <property type="protein sequence ID" value="KKO20405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20405">
        <property type="protein sequence ID" value="KKO20405"/>
        <property type="gene ID" value="BROFUL_00876"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="70"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="102"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20405.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="137" mass="15516" checksum="A5103EEBC951CC4B" modified="2015-11-11" version="1">MQMRGKIISISYDVAEVCIIREKTACENCAACSNKIGVHDMIKVAAIQGLQVGQEVLLRETRNWFTKNKIVFALLAFVFGMIVTEAMSTIVSFGIYRTEIDLLVGGLMTIIMVMVLWIKRPRYFFTIELTERGKDSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY13</accession>
    <name>A0A0M2UY13_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01420</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000146">
        <property type="protein sequence ID" value="KKO19861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19861">
        <property type="protein sequence ID" value="KKO19861"/>
        <property type="gene ID" value="BROFUL_01420"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.510.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018592">
        <property type="entry name" value="DUF2024"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023122">
        <property type="entry name" value="NE1680-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09630">
        <property type="entry name" value="DUF2024"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160766">
        <property type="entry name" value="SSF160766"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="86" mass="9942" checksum="D6A110C75786B350" modified="2015-11-11" version="1">MKVAVYDTYVVKKNGVTMHFDIIVPKEQSHEKAIQYGLEYLKRVGQEGQPLTTQECRFCHTENASENVKKVIEDSGYYIHEMEGCK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYC9</accession>
    <name>A0A0M2UYC9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00410</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000056">
        <property type="protein sequence ID" value="KKO20852.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20852">
        <property type="protein sequence ID" value="KKO20852"/>
        <property type="gene ID" value="BROFUL_00410"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007438">
        <property type="entry name" value="DUF488"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014519">
        <property type="entry name" value="UCP024492"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04343">
        <property type="entry name" value="DUF488"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF024492">
        <property type="entry name" value="UCP024492"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20852.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="192" mass="21715" checksum="F103CA0A6996CD53" modified="2015-11-11" version="1">MRKGTSEKPAVILTIGHSIHTLEVFIRLLCAHEVKHVVDVRTVPRSRRNPQFNRETLPDSLKAVGIRYTHMAGLGGLRHPRPDSPNIGWRNASFRGFADYMQTPEFEKNLETMIALAGCERIALMCAESLPWRCHRSLIADALLVRNIQVEHIMSEKKRQPHKLTPWAVVRGIRITYPPDAAQIDPGTGKES</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYD7</accession>
    <name>A0A0M2UYD7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01790</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000187">
        <property type="protein sequence ID" value="KKO19494.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19494">
        <property type="protein sequence ID" value="KKO19494"/>
        <property type="gene ID" value="BROFUL_01790"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19494.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="73" mass="7931" checksum="A9F875544970E51E" modified="2015-11-11" version="1">MIQICFMKLGLRQSPQCRATSLVAPAAILKFLNIKLWVQVVNLNPRGDILVPSAAIGLMIVPRWRGTKGGGMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYF3</accession>
    <name>A0A0M2UYF3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01766</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000183">
        <property type="protein sequence ID" value="KKO19524.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19524">
        <property type="protein sequence ID" value="KKO19524"/>
        <property type="gene ID" value="BROFUL_01766"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2190"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030931">
        <property type="entry name" value="Group_II_RT_mat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013597">
        <property type="entry name" value="Mat_intron_G2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08388">
        <property type="entry name" value="GIIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="SSF56672"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04416">
        <property type="entry name" value="group_II_RT_mat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="77"/>
            <end position="317"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19524.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="438" mass="50420" checksum="9614A02F9B0F9E1F" modified="2015-11-11" version="1">MLTTPEKIRILQRKLYRKAKQEPTYRFYALYDKVFRADILSHAYTLVRANKGSAGIDGVTFEAIEEREGVSAFLAELQEALRSKTYQASPVKRVMIPKTDGTERPLGIPTIRDRVAQMAVKLVIEPIFEADFCECSYGFRPKKSAHDAVDDVAYTLNKGYTEIIDADLSKYFDTIPHAKLMAVVAERISDGEILHLIKTWLKAPVIEKGRDGKQRNIGGGKGNRKGTPQGGVISPLLANLYLHLLDRIWERHRLEKKLGARLVRFADDFVVLCRQGTEQPMAITKRVLDKLGLTLNEAKSRVVDAMKEGFTFLGFELQKRKNWRTGKSYPHVQPSKKSLKKIKDHITALTSRNRSPLPFEAIVKEVNTALIGWTGYFHYRNCSRVLKQVREHAQFRLRIHLYRRHKIRDRKTGLKRYTNSMLYERYGLYKVPTTAVWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYM9</accession>
    <name>A0A0M2UYM9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aldo/keto reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01198</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000127">
        <property type="protein sequence ID" value="KKO20086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20086">
        <property type="protein sequence ID" value="KKO20086"/>
        <property type="gene ID" value="BROFUL_01198"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1480"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020471">
        <property type="entry name" value="AKR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018170">
        <property type="entry name" value="Aldo/ket_reductase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NADP_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00069">
        <property type="entry name" value="ALDKETRDTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="SSF51430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00062">
        <property type="entry name" value="ALDOKETO_REDUCTASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldo_ket_red" evidence="1">
        <location>
            <begin position="18"/>
            <end position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="335" mass="37956" checksum="2052CFA132149ED8" modified="2015-11-11" version="1">MRGMEYLKIAGTELSASRIGLGTWAIGGWMWGGTEEKTSILTIHKALERGINLIDTAPVYGQGRSEEIVGKAIEQYGRRDEVIIATKVCLDWSGTKIVRNSTRDRIFSEIEDSLRRLRTDVVDIYQVHWPDPLVPIEETAGAMNHLYRQGKIRAIGVSNYSPEQMNIFRQTAPLHVAQPPYNLFERQIEQEILPYTHKHNITTLTYGALCRGLLTGRMKPDTQFTGNDLRKIDPKFQQPRYGQYLEAVAQLDRLARKRLKKGVLTLAVRWLLDQPGVGIALWGARSPSQIDAIDEVMGWAIDDESRTTIDQILRDTIREPIGPEFMSPSSRDTVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYR9</accession>
    <name>A0A0M2UYR9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative gluconate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00028</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000006">
        <property type="protein sequence ID" value="KKO21233.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21233">
        <property type="protein sequence ID" value="KKO21233"/>
        <property type="gene ID" value="BROFUL_00028"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21233.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="31" mass="3141" checksum="67E9952FA9BD704D" modified="2015-11-11" version="1">MCVELFSLRDKVALVTGAGKGHGKIDGPGAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYX3</accession>
    <name>A0A0M2UYX3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00438</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000058">
        <property type="protein sequence ID" value="KKO20825.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20825">
        <property type="protein sequence ID" value="KKO20825"/>
        <property type="gene ID" value="BROFUL_00438"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007403">
        <property type="entry name" value="DUF456"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04306">
        <property type="entry name" value="DUF456"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="88"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="133"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20825.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="164" mass="17410" checksum="0DC42090C37E7F1E" modified="2015-11-11" version="1">MEVWDSAIFVISLIIMMMGMAGIIVPIIPSTPLIWVGAFIYAISTHFEKVTWLMVLLLALMAIFSVVLENLGNVYGAKKFGATRWGIIGSFVGTGAGFFMGGPVGLILGPIVGTIVFELIGGKGYRGALKSGVGNFVGFLGGSLLKLLIGLAMISLFVWKVFFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYY0</accession>
    <name>A0A0M2UYY0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01601</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19669.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19669">
        <property type="protein sequence ID" value="KKO19669"/>
        <property type="gene ID" value="BROFUL_01601"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19669.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="152" mass="17532" checksum="250A60E87531301F" modified="2015-11-11" version="1">MQYSQDNSKTAFDNIDAVKEDRYRMIAKSMEGWGQKYIIVQSAGIGEFSRYPEYSQRAWKPFGRKKDGYAWQENQVIKKGVIGAYKHDDTRKSVVPVERASYDASKPEMYAMIRAVILNPYGPARLSMPFEVPRYPSYLRQNPTHCSAAFRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ44</accession>
    <name>A0A0M2UZ44_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7">6-phosphogluconolactonase</fullName>
            <shortName evidence="7">6PGL</shortName>
            <ecNumber evidence="5 7">3.1.1.31</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">pgl</name>
        <name evidence="9" type="ORF">BROFUL_00375</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 7">Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>6-phospho-D-glucono-1,5-lactone + H2O = 6-phospho-D-gluconate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:12556"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57955"/>
            <dbReference type="ChEBI" id="CHEBI:58759"/>
            <dbReference type="EC" id="3.1.1.31"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 7">Carbohydrate degradation; pentose phosphate pathway; D-ribulose 5-phosphate from D-glucose 6-phosphate (oxidative stage): step 2/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 7">Belongs to the glucosamine/galactosamine-6-phosphate isomerase family. 6-phosphogluconolactonase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.31" evidence="5 7"/>
    <dbReference type="EMBL" id="LAQJ01000047">
        <property type="protein sequence ID" value="KKO20905.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20905">
        <property type="protein sequence ID" value="KKO20905"/>
        <property type="gene ID" value="BROFUL_00375"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.465"/>
    <dbReference type="UniPathway" id="UPA00115">
        <property type="reaction ID" value="UER00409"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017057">
        <property type="term" value="F:6-phosphogluconolactonase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006098">
        <property type="term" value="P:pentose-phosphate shunt"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd01400">
        <property type="entry name" value="6PGL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005900">
        <property type="entry name" value="6-phosphogluconolactonase_DevB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006148">
        <property type="entry name" value="Glc/Gal-6P_isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039104">
        <property type="entry name" value="PGLS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11054">
        <property type="entry name" value="PTHR11054"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01182">
        <property type="entry name" value="Glucosamine_iso"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="SSF100950"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01198">
        <property type="entry name" value="pgl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glucosamine_iso" evidence="8">
        <location>
            <begin position="15"/>
            <end position="239"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002681"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004961"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00020337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU365095"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01182"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20905.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="255" mass="28611" checksum="24AA8B5725B9101C" modified="2015-11-11" version="1">MTKALVKREIRVVANPDELSHQAAQEFVRLAGEAVRAKGFFTVALSGGSTPRGLYTMLASDVYRKQVSWTDVYLFWGDERCVPPDDPDSNYRMTREALIQRVPIPKEHIHRIPAEREDHAHAAGEYEQTIKTFFHLNTGEFPRFDLILLGMGDDGHTASLFPGVSVLEETSRFMCSHYVEKLGAYRLTLTVPVINQAEHIIFLVSGASKAPVLQEVLEGDYQPQRLPAQLIQPVHGRLLFIVDRMAAGKLTRTGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ73</accession>
    <name>A0A0M2UZ73_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00152</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000017">
        <property type="protein sequence ID" value="KKO21107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21107">
        <property type="protein sequence ID" value="KKO21107"/>
        <property type="gene ID" value="BROFUL_00152"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="27"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="27"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="62" mass="7171" checksum="962D179AD53068C1" modified="2015-11-11" version="1">MIPPGKKQLVFLQKAYKLDTILSRRQGFRKRRDGRENSCNQLPGKKDFKNKRFLPGIGNNAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZG6</accession>
    <name>A0A0M2UZG6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 11">ATP phosphoribosyltransferase</fullName>
            <shortName evidence="11">ATP-PRT</shortName>
            <shortName evidence="11">ATP-PRTase</shortName>
            <ecNumber evidence="4 11">2.4.2.17</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">hisG</name>
        <name evidence="14" type="ORF">BROFUL_00913</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10 11">Catalyzes the condensation of ATP and 5-phosphoribose 1-diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>1-(5-phospho-beta-D-ribosyl)-ATP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + ATP</text>
            <dbReference type="Rhea" id="RHEA:18473"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="ChEBI" id="CHEBI:73183"/>
            <dbReference type="EC" id="2.4.2.17"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="activity regulation">
        <text evidence="11">Feedback inhibited by histidine.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 11">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 1/9.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 11">Belongs to the ATP phosphoribosyltransferase family. Long subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.17" evidence="4 11"/>
    <dbReference type="EMBL" id="LAQJ01000110">
        <property type="protein sequence ID" value="KKO20356.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20356">
        <property type="protein sequence ID" value="KKO20356"/>
        <property type="gene ID" value="BROFUL_00913"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1150"/>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00006"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003879">
        <property type="term" value="F:ATP phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00079">
        <property type="entry name" value="HisG_Long"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013820">
        <property type="entry name" value="ATP_PRibTrfase_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001348">
        <property type="entry name" value="ATP_PRibTrfase_HisG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020621">
        <property type="entry name" value="ATP_PRibTrfase_HisG_long"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013115">
        <property type="entry name" value="HisG_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011322">
        <property type="entry name" value="N-reg_PII-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015867">
        <property type="entry name" value="N-reg_PII/ATP_PRibTrfase_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21403">
        <property type="entry name" value="PTHR21403"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01634">
        <property type="entry name" value="HisG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08029">
        <property type="entry name" value="HisG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54913">
        <property type="entry name" value="SSF54913"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00070">
        <property type="entry name" value="hisG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03455">
        <property type="entry name" value="HisG_C-term"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 11" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 11 14" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="9 11" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 11 14" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HisG" evidence="12">
        <location>
            <begin position="50"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="domain" description="HisG_C" evidence="13">
        <location>
            <begin position="215"/>
            <end position="287"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004667"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007955"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00020998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00024861"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00079"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF01634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF08029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KKO20356.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="290" mass="31926" checksum="1EA95576CC161890" modified="2015-11-11" version="1">MKKLHLGLPKGSLQESTVEMMRKAGYSVHISPRSYYPTIDDDEISVRLIRPQDMSRYVERGIIDAGLTGADWVKEAGSDIRVVVSLVYAKQQLTKVRWVLAVPETSAIRSVNDLQGKRIATELVNVTRQYLAEHGVVADIEFSHGATEAKAPDLVDAIVELTETGSSLKANKLRIIETVMESSTQLIANNQAWKDEWKRTKIENLAMLFEGAVIARVKVGLKMNVPANALEQVLAKLPALRKPTVSPLSEGAGYAIETVLDETVARSITPELKRAGAEGIIEYPLNKVIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZK1</accession>
    <name>A0A0M2UZK1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Aminotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00882</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000107">
        <property type="protein sequence ID" value="KKO20391.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20391">
        <property type="protein sequence ID" value="KKO20391"/>
        <property type="gene ID" value="BROFUL_00882"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1115"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00610">
        <property type="entry name" value="OAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000521">
        <property type="entry name" value="Transaminase_4ab_Lys_Orn"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00600">
        <property type="entry name" value="AA_TRANSFER_CLASS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="1 2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20391.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="465" mass="51792" checksum="F0666710E7DBFAD8" modified="2015-11-11" version="1">MFTPCRGRFQTCPYKTIVFMERIFQKARSLQKQKDFIMTTNHIGPDAILQKKQEYLIPCVYHFYRKPMQIVRGKMQHLYDHTGKQYLDFYGGVSVMNAGHCNPEVVEKICEQVRTLQHTTAIYLTQPIVDLAEKLAQITPRSLKRSFFCASGSEANEGAALLAQLYTGKNKFVAIQQGLHGRTKLTMNLTGLPMWRTDPNPLSDVVHIPGAYCYRCAYGLTYPRCDLTCAWRLEDVVKNGEYAAFIAEPIQGNGGILTPPPGYFKLIREILDRYHVLFIADEVQTGFGRTGEMFAIEHWDVLPDIMTLAKALANGTPIGAFITNDTIASSYTRPGASTTGGNPVSATAALATIDVIEKHQLVERARTLGAYFQEKLLELQQRHTIIGEVRGKGLMLGVELVKEDKIPAAEETDHILERLKDCGILAGKTGVSRNVLTFQPPLVITGTDIDHVAKTLDSILYSGCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZS5</accession>
    <name>A0A0M2UZS5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00791</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000101">
        <property type="protein sequence ID" value="KKO20476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20476">
        <property type="protein sequence ID" value="KKO20476"/>
        <property type="gene ID" value="BROFUL_00791"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="41"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="43"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="131" mass="14990" checksum="F7A078EEDA453A8D" modified="2015-11-11" version="1" fragment="single">MSWVCPYQINNECTRLKKACQPLQDGCVMEGKAAFIDSPLDRVNENRAQKEKNQKRNVRLPSAAQPQPNFLYESGEIASEKALAMTATMHFDGTLHVVIASEAKQSFTHKKRHLLKEVCEKTYKKKKFLYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0B1</accession>
    <name>A0A0M2V0B1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00619</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20636.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20636">
        <property type="protein sequence ID" value="KKO20636"/>
        <property type="gene ID" value="BROFUL_00619"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="90"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="125"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="151"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20636.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="212" mass="24439" checksum="AC16EBB1CC3E9B75" modified="2015-11-11" version="1">MYGDAAVVVVFAVAYLLHKSASETIVLHIMDYLYERRRQRFKTIRYLKNCIIWSKKNFFLVITGFGLYMVSKYPLSIGLELIFIEDITTLSFILNVLRGITLWYSSFIFCSVYCKYLFISKSAALMMHTFFVIRNLFDTNVYWLITSYDLHIGAPLLDVLSPIIIVYSVIYIIVNGGISSRIFHSLKNDKHEFAHMKKGASLTVKDLSLIPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0K2</accession>
    <name>A0A0M2V0K2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00552</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000077">
        <property type="protein sequence ID" value="KKO20716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20716">
        <property type="protein sequence ID" value="KKO20716"/>
        <property type="gene ID" value="BROFUL_00552"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="29"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="63" mass="7389" checksum="2A7B2827F732F7C6" modified="2015-11-11" version="1">MKIVLRIIDILVFLRGAGRKRTKRSFHEIDAFLFFLITIILISSIMIIESLNSLKQELRLKSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V188</accession>
    <name>A0A0M2V188_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00799</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the type-I restriction system S methylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000101">
        <property type="protein sequence ID" value="KKO20484.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20484">
        <property type="protein sequence ID" value="KKO20484"/>
        <property type="gene ID" value="BROFUL_00799"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1013"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.220.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000055">
        <property type="entry name" value="Restrct_endonuc_typeI_TRD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044946">
        <property type="entry name" value="Restrct_endonuc_typeI_TRD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01420">
        <property type="entry name" value="Methylase_S"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0680">Restriction system</keyword>
    <feature type="domain" description="Methylase_S" evidence="4">
        <location>
            <begin position="5"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="domain" description="Methylase_S" evidence="4">
        <location>
            <begin position="230"/>
            <end position="406"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010923"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01420"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20484.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="473" mass="54096" checksum="B63491397A646219" modified="2015-11-11" version="1">MSNLPKGWTVEKLGNISERITKGTTPTSYGFKYLDSGIRFVKVENIKNGEIDHDSIRHYISGTANENQKRSILQDGDILFSIAGTIGVSCLVTRDDLPANTNQALAIIRGTKHTFNPKFLMLQLGSQLSKKEVEKQARGGGMNNISLQDVSEMIVNIPPFNEQRRIVAKLEKLLHRVDACKERLDKIPAILKRFRQSVLAAACSGRLTEDWREKNTDDNNYDKDYKLPASWKRAELSEFIDSMTNGIYKPDKYYDDKATACLRMYNIQEGKIILKNLKRILLSTDEIEKYKLEEGDILVNRVNSRELVGKAGIVEKLPEPIIFESKNIRLRLKRKLISPRYINYCFMTRIARDAFEDTAKQTVGMATISQPQIASLKVPVPTLPEQHEIVRRVDALFKKADEIEARYKKAEAFVDKLSQSILAKAFRGELVPQDPNDEPASELLKRVKEERVAREVKIEAEKRKKRKEKFLIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1H9</accession>
    <name>A0A0M2V1H9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">50S ribosomal protein L25</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">General stress protein CTC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rplY</name>
        <name evidence="6" type="synonym">ctc</name>
        <name evidence="9" type="ORF">BROFUL_00692</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20574.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20574">
        <property type="protein sequence ID" value="KKO20574"/>
        <property type="gene ID" value="BROFUL_00692"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.879"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008097">
        <property type="term" value="F:5S rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00495">
        <property type="entry name" value="Ribosomal_L25_TL5_CTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.120.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.240.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01334">
        <property type="entry name" value="Ribosomal_L25_CTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020056">
        <property type="entry name" value="Rbsml_L25/Gln-tRNA_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029751">
        <property type="entry name" value="Ribosomal_L25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011035">
        <property type="entry name" value="Ribosomal_L25/Gln-tRNA_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020057">
        <property type="entry name" value="Ribosomal_L25_b-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037121">
        <property type="entry name" value="Ribosomal_L25_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001021">
        <property type="entry name" value="Ribosomal_L25_long"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01386">
        <property type="entry name" value="Ribosomal_L25p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14693">
        <property type="entry name" value="Ribosomal_TL5_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50715">
        <property type="entry name" value="SSF50715"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00731">
        <property type="entry name" value="bL25_bact_ctc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6 9" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 6" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_TL5_C" evidence="8">
        <location>
            <begin position="99"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="196"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01334"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF14693"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20574.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="215" mass="24246" checksum="74280B7DF95DBCAF" modified="2015-11-11" version="1">MKILELKAEKRATKGSKAVQKLRMTGKIPAVLYGHRQDNIMLCMKEDEFTRILHTGTRMLYLTYDNQRESALIKEIQYDHIVDRVLHVDFSRIDLDERVKLRVPVELTGESIGVKEGGILTHVMKDIEIECLPTAIPEMIKVNVSELGLGKAIHVKELPVLEGIRYLSDGETVVVSVHQLVEKKAVAEEELLAEPEVITKKPKEGEEAAEAEKKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1T1</accession>
    <name>A0A0M2V1T1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00632</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20649">
        <property type="protein sequence ID" value="KKO20649"/>
        <property type="gene ID" value="BROFUL_00632"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018676">
        <property type="entry name" value="DUF2149"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09919">
        <property type="entry name" value="DUF2149"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="57"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="142" mass="16020" checksum="2B67F564C6EF7717" modified="2015-11-11" version="1">MGISITQFPNRYPEYVRLCGEQKYTMRYLKKRRRVIGRDVDLHQEDPMSGVANLFDVGVVFIVGLIGALISAYSLLDLLSPKTEITMVKQRENGQVEIVTKKGKQVKVEKVTDKKLQGEGTRLGIAYRLTDGKVIYVPEGSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V242</accession>
    <name>A0A0M2V242_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00493</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000067">
        <property type="protein sequence ID" value="KKO20779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20779">
        <property type="protein sequence ID" value="KKO20779"/>
        <property type="gene ID" value="BROFUL_00493"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006439">
        <property type="entry name" value="HAD-SF_hydro_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041492">
        <property type="entry name" value="HAD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13419">
        <property type="entry name" value="HAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01549">
        <property type="entry name" value="HAD-SF-IA-v1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01509">
        <property type="entry name" value="HAD-SF-IA-v3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="203" mass="23153" checksum="BBA17FF90B73F33C" modified="2015-11-11" version="1">MLRGIIFDMDGTLTKPNVDFAAIEREIGAKVGFIIDYAERSTPEERKRALEILERYEAQAASESELNEGVVEMLEYISKKQLKKALLTRNSRKSVETVLQKHCLHFEFIVSREDTKPKPAPDPIFLLSKKMNIHTDHLLMVGDYKYDILCGKAAGTKTVLLRYKEYIETEVVPDFEIESIREIIDIITHFEKMSTGLNGGVSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2G9</accession>
    <name>A0A0M2V2G9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DNA repair photoproduct lyase</fullName>
            <ecNumber evidence="1">4.1.99.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">splb</name>
        <name evidence="1" type="ORF">BROFUL_00369</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.99.-" evidence="1"/>
    <dbReference type="EMBL" id="LAQJ01000047">
        <property type="protein sequence ID" value="KKO20899.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20899">
        <property type="protein sequence ID" value="KKO20899"/>
        <property type="gene ID" value="BROFUL_00369"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20899.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="435" mass="50526" checksum="61003F64C8C530C2" modified="2015-11-11" version="1">MTINTEHIKAFVRKYYHYLGINKQQEISRLLFEIAKRERIDYTKVTESLPKPPTRFSKIKDYLLERRYPSLAVAGQGIRPALFDVAIDPKLKMDVALKPQIQPKNLFIEDSVFHTEMANRVRTHFPESTVERIKTYKEHVGKRRFGIEDYNRRLENFYLVREDYDFFKKCPCSSKSVFCGYFVVNLGSGCPYECSYCVLQDYINSPGIILPANIEDFFAAFRNLGRNIRCGSCELTDSLAFDHITGYSPQIVAFFRSYPKTMYELKTKSDNVGLLTSVPGARNVIVSWSLNPQKIVEAVEHFTAPLAQRLAAAQRCVASGYRVAFHFDPVIYYQGWEADYEALVDMTFQAVDAENVAWISLGALRMTPRLKKIIENRFPDNTLLDEEFFVGHDGKLRYPKDVRIFLYKKMTSWIRRHGKDVPVYLCMEEKSMRLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2H8</accession>
    <name>A0A0M2V2H8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00362</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000045">
        <property type="protein sequence ID" value="KKO20909.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20909">
        <property type="protein sequence ID" value="KKO20909"/>
        <property type="gene ID" value="BROFUL_00362"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008203">
        <property type="entry name" value="AF2212-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024069">
        <property type="entry name" value="AF2212-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01954">
        <property type="entry name" value="DUF104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20909.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="76" mass="8757" checksum="F6C34BEA72B046D6" modified="2015-11-11" version="1">MVKSVEAIFENGVFKPLEKMDLEEHKKVTIIVTNEPEEIFDTLFLVSMVYDGFSAQEIEDIEKVATDRSRFSRNGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPF6</accession>
    <name>A0A0M2UPF6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PHP domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03314</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000302">
        <property type="protein sequence ID" value="KKO18003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18003">
        <property type="protein sequence ID" value="KKO18003"/>
        <property type="gene ID" value="BROFUL_03314"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4083"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016195">
        <property type="entry name" value="Pol/histidinol_Pase-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89550">
        <property type="entry name" value="SSF89550"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="558"/>
            <end position="633"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18003.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="883" mass="101939" checksum="F103EBDDCEB45780" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPI0</accession>
    <name>A0A0M2UPI0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Pyridoxine 5'-phosphate synthase</fullName>
            <shortName evidence="2">PNP synthase</shortName>
            <ecNumber evidence="2">2.6.99.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2 3" type="primary">pdxJ</name>
        <name evidence="3" type="ORF">BROFUL_03306</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>1-deoxy-D-xylulose 5-phosphate + 3-amino-2-oxopropyl phosphate = H(+) + 2 H2O + phosphate + pyridoxine 5'-phosphate</text>
            <dbReference type="Rhea" id="RHEA:15265"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57279"/>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
            <dbReference type="ChEBI" id="CHEBI:58589"/>
            <dbReference type="EC" id="2.6.99.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cofactor biosynthesis; pyridoxine 5'-phosphate biosynthesis; pyridoxine 5'-phosphate from D-erythrose 4-phosphate: step 5/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homooctamer; tetramer of dimers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the PNP synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.6.99.2" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000301">
        <property type="protein sequence ID" value="KKO18028.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18028">
        <property type="protein sequence ID" value="KKO18028"/>
        <property type="gene ID" value="BROFUL_03306"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4074"/>
    <dbReference type="UniPathway" id="UPA00244">
        <property type="reaction ID" value="UER00313"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033856">
        <property type="term" value="F:pyridoxine 5'-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008615">
        <property type="term" value="P:pyridoxine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00003">
        <property type="entry name" value="PNPsynthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00279">
        <property type="entry name" value="PdxJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004569">
        <property type="entry name" value="PyrdxlP_synth_PdxJ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036130">
        <property type="entry name" value="Pyridoxine-5'_phos_synth"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30456">
        <property type="entry name" value="PTHR30456"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03740">
        <property type="entry name" value="PdxJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63892">
        <property type="entry name" value="SSF63892"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00559">
        <property type="entry name" value="pdxJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 2" id="KW-0664">Pyridoxine biosynthesis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="1-deoxy-D-xylulose 5-phosphate binding" evidence="2">
        <location>
            <begin position="9"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="region of interest" description="3-amino-2-oxopropyl phosphate binding" evidence="2">
        <location>
            <begin position="213"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="2">
        <location>
            <position position="191"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="7"/>
        </location>
        <ligand>
            <name>3-amino-2-oxopropyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57279"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="18"/>
        </location>
        <ligand>
            <name>3-amino-2-oxopropyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57279"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="45"/>
        </location>
        <ligand>
            <name>1-deoxy-D-xylulose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="50"/>
        </location>
        <ligand>
            <name>1-deoxy-D-xylulose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="100"/>
        </location>
        <ligand>
            <name>1-deoxy-D-xylulose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="192"/>
        </location>
        <ligand>
            <name>3-amino-2-oxopropyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57279"/>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="2">
        <location>
            <position position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023096"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18028.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="247" mass="27205" checksum="DB6D2448E953E604" modified="2015-11-11" version="1">MIQLGVNIDHVATLRQARRTFEPDPVMAAYLAVLGGADIITVHLREDRRHIQDRDVKLLRETACTKINLEMSTAPEIVDIALKTKPEQVTLVPEKRQEVTTEGGLDVAFQKTTIREVVKRLKGDGIQVSLFIDPEEIQIAAAKDVGASYIELHTGNYANTGDPVTRNTLIEKLQQGARIARAAGLRVNAGHGLTYQNVGLLVESLNVEELHIGHSIVSRAVFTGIQKAVSEMKELIARHSASKHWVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPY7</accession>
    <name>A0A0M2UPY7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Peptidase C13 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03355</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000307">
        <property type="protein sequence ID" value="KKO17957.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17957">
        <property type="protein sequence ID" value="KKO17957"/>
        <property type="gene ID" value="BROFUL_03355"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0110165">
        <property type="term" value="C:cellular anatomical entity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001096">
        <property type="entry name" value="Peptidase_C13"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01650">
        <property type="entry name" value="Peptidase_C13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="315"/>
            <end position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO17957.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="343" mass="38732" checksum="C617BA9F0A150E81" modified="2015-11-11" version="1">MQRFLKRFSYIFMICLVLSGGCITVEYRRGPIPEHLSMGEHAHSCYCGCCDISGPRPPPVLSPASEYKHAVLICAGVTNADRQRYNSAYWYDLMSQYLMLRERGFNDENIHVLYGYDGEDYYPGLLDYNSAHLFGKKITDMAISKANIESVFQALGGKRSDVNCVSRALTDEDYLYIWWMGHGGSDPGTCNLYLPISVTGEEFTDVELSNCINQVSHYKKRVVAVMTCFSSGILDDMINEKGVNTVTLASSSCDEYSYDIWPTCDRRPHAEFNYKLTEAIRQMDICNKPLKKDPDTNPKDGYVSLAEACDYIAPPMRNPTAPRKISDPDKISDSTYFNEPNTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPZ3</accession>
    <name>A0A0M2UPZ3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">LigB family dioxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_03152</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the DODA-type extradiol aromatic ring-opening dioxygenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000289">
        <property type="protein sequence ID" value="KKO18158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18158">
        <property type="protein sequence ID" value="KKO18158"/>
        <property type="gene ID" value="BROFUL_03152"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3886"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008198">
        <property type="term" value="F:ferrous iron binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016701">
        <property type="term" value="F:oxidoreductase activity, acting on single donors with incorporation of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006725">
        <property type="term" value="P:cellular aromatic compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07363">
        <property type="entry name" value="45_DOPA_Dioxygenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014436">
        <property type="entry name" value="Extradiol_dOase_DODA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004183">
        <property type="entry name" value="Xdiol_dOase_suB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02900">
        <property type="entry name" value="LigB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006157">
        <property type="entry name" value="Doxgns_DODA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="LigB" evidence="5">
        <location>
            <begin position="8"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="269" mass="29491" checksum="7C1EB3A089FA3DB3" modified="2015-11-11" version="1">MNNQRRALFLSHGGGPLPLLGDDAHSEMVSCLKEIAETISRPSAIIVVSAHWEAGSATVTSGANPGLIYDYSGFPPESYEIKYPCSGNPPLASSITKQLGKAGINASSDSARGFDHGLFVPLKIMYPEADIPCVQLSLIKGLDPLAHIKLGRALQDLADQSLLLIGSGFSFHNMKAFFAPNTVDSMNANKSFERWLIDTCSNQNISEEERTERLVNWEAAPSARYCHPREEHLLPLQVCYGFAASACTESFELQILNKESSMYLWEHES</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ83</accession>
    <name>A0A0M2UQ83_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03265</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000299">
        <property type="protein sequence ID" value="KKO18042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18042">
        <property type="protein sequence ID" value="KKO18042"/>
        <property type="gene ID" value="BROFUL_03265"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="73" mass="8248" checksum="9B2C789CAA21A9CC" modified="2015-11-11" version="1">MSERLLRGVYPEQIECARNDNVSCAITVHGRCHCKGLFRSNSPAFIKEIWLLLCCARYKGNTCSGEKQTMVPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQA7</accession>
    <name>A0A0M2UQA7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Histidine kinase protein</fullName>
            <ecNumber evidence="6">2.7.3.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">atoS</name>
        <name evidence="6" type="ORF">BROFUL_03000</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.3.-" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18273">
        <property type="protein sequence ID" value="KKO18273"/>
        <property type="gene ID" value="BROFUL_03000"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13426">
        <property type="entry name" value="PAS_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PAS" evidence="4">
        <location>
            <begin position="67"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="5">
        <location>
            <begin position="139"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="3">
        <location>
            <begin position="204"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="29"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="440" mass="49188" checksum="75D16F8683BFDC49" modified="2015-11-11" version="1">MTETTSLNPMALKCDTELATAFHLFNQYTQRLEESYNQLQRRVKEIDREMALANARLKDKVQELDSLTKYLNNLLSSIHSGVIAVNMEGKVSTVNTATEKILKLPKLDFVGKKVEEIFKNSDGSTSLLQVALEKKKDCIDVERKIVTSQGVTKLIESSVSLIKDANENTVGAVEIFRDLSEIRELEKRLRNADKLAAIGAMAASVAHEIRNPLNGIEGFSALLSRDFDDSDPRKKLVNNIIQGTKNLNKTITELLVFARPLRMNLKNSKISEILNKTLFFVAEDIKQKSVQNINIRKEYSCNVDGLTCDPEKLQQAFLNLCLNALQSMPHGGSLSVFTRSYEVDGFEGVQVGIRDTGIGIKKEVIHKIFDPFFTTKQEGTGLGLAIVSKIVDAHNGKISVESQENIGTTFYVHLPTKSAYEIDTFGSTWENNEYLVSQYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQE0</accession>
    <name>A0A0M2UQE0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03451</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000315">
        <property type="protein sequence ID" value="KKO17875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17875">
        <property type="protein sequence ID" value="KKO17875"/>
        <property type="gene ID" value="BROFUL_03451"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="150" mass="16671" checksum="FA2C0D20F2820CB5" modified="2015-11-11" version="1">MKVNGFTKDEKIICLFILFMGILHPMKTVYSNSSAEKKKAETPITGVTIVSLDAPLRASIGRKVNIEVVIGNERATKATTILTVTCPTTKQQIGREAETLASLSSQKITYSWNTDGLKEGTYVIRAELEKLPDETVLDDNVRQIEILMQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQL8</accession>
    <name>A0A0M2UQL8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative cytochrome c-554</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03363</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000309">
        <property type="protein sequence ID" value="KKO17950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17950">
        <property type="protein sequence ID" value="KKO17950"/>
        <property type="gene ID" value="BROFUL_03363"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009166">
        <property type="term" value="P:nucleotide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006179">
        <property type="entry name" value="5_nucleotidase/apyrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023155">
        <property type="entry name" value="Cyt_c-552/4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036280">
        <property type="entry name" value="Multihaem_cyt_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11575">
        <property type="entry name" value="PTHR11575"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13435">
        <property type="entry name" value="Cytochrome_C554"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48695">
        <property type="entry name" value="SSF48695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cytochrome_C554" evidence="1">
        <location>
            <begin position="326"/>
            <end position="393"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO17950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="399" mass="44368" checksum="05C1416828B7D7EB" modified="2015-11-11" version="1">MKRLFVLYALFFPMMFPVNIYAFPKDVAIIFSGEELGNLQPCGCYEGQLGGISRRYSFIDFVKKQKKCVLPVSLGDLPKGSGRQDEIKMETLSRALGFMGYILHNLGEKDIEINPQVLSFLSQSQGVEFLSSNVSFNAPFPIKINQSVIKECCDFDSRVKIAFLGILSKSFLDPNLSEYVTLSEPIKALKPYIKQLRNKVNLIVLLSHAPLEESKEIAKYFPEIGLVITGHHIEEPKDAITYVQDTPIVSSGMGGKYIGIVTYGVDKKMLERKSVEIIPLDHSFQGSQEMVSLLQEYQNILKDEDLLSSIPQAPLPNGLAYAGSFTCSACHKIIYDHWLKTAHGIAYHTLAGVGHQYDPECIQCHTTGYGNVSGFLNAEKNQNLFHVGCESCHAPGINT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQU8</accession>
    <name>A0A0M2UQU8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">ATP synthase subunit b</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">ATP synthase F(0) sector subunit b</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">ATPase subunit I</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">F-type ATPase subunit b</fullName>
            <shortName evidence="11">F-ATPase subunit b</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">atpF</name>
        <name evidence="14" type="ORF">BROFUL_02846</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0).</text>
    </comment>
    <comment type="function">
        <text evidence="10 11">F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">F-type ATPases have 2 components, F(1) - the catalytic core - and F(0) - the membrane proton channel. F(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). F(0) has three main subunits: a(1), b(2) and c(10-14). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. F(1) is attached to F(0) by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta and b chains.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cell membrane</location>
            <topology evidence="11">Single-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="11 12">Belongs to the ATPase B chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000268">
        <property type="protein sequence ID" value="KKO18463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18463">
        <property type="protein sequence ID" value="KKO18463"/>
        <property type="gene ID" value="BROFUL_02846"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045263">
        <property type="term" value="C:proton-transporting ATP synthase complex, coupling factor F(o)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01398">
        <property type="entry name" value="ATP_synth_b_bprime"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028987">
        <property type="entry name" value="ATP_synth_B-like_membr_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002146">
        <property type="entry name" value="ATP_synth_b/b'su_bac/chlpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005864">
        <property type="entry name" value="ATP_synth_F0_bsu_bac"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00430">
        <property type="entry name" value="ATP-synt_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81573">
        <property type="entry name" value="SSF81573"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01144">
        <property type="entry name" value="ATP_synt_b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 11" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="11" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3 11 12" id="KW-0138">CF(0)</keyword>
    <keyword evidence="13" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5 11 12" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="7 11 12" id="KW-0406">Ion transport</keyword>
    <keyword evidence="8 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 11 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 11 12" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="14"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="13">
        <location>
            <begin position="44"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022547"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00025198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01398"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU003848"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KKO18463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="169" mass="19295" checksum="F7B89C9DD9315AAB" modified="2015-11-11" version="1">MDILNTLGINFKSIIIQGVGFLILLFVLKKFLFGKISAMIKARADEVKNTYEKTEKDRVEAERLMLEYQKKLAEAEDTAARKVQDAINEGNRISEEIVKRAKEEVEQIRLKAQESIDLERKKALTEIRNQVVTLSVLASSRIIQQSISQKTAEKLVDDFIEEIGELSVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URC1</accession>
    <name>A0A0M2URC1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cold shock protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02694</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000248">
        <property type="protein sequence ID" value="KKO18608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18608">
        <property type="protein sequence ID" value="KKO18608"/>
        <property type="gene ID" value="BROFUL_02694"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3331"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04458">
        <property type="entry name" value="CSP_CDS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011129">
        <property type="entry name" value="CSD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019844">
        <property type="entry name" value="CSD_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002059">
        <property type="entry name" value="CSP_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00313">
        <property type="entry name" value="CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00050">
        <property type="entry name" value="COLDSHOCK"/>
    </dbReference>
    <dbReference type="SMART" id="SM00357">
        <property type="entry name" value="CSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00352">
        <property type="entry name" value="CSD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51857">
        <property type="entry name" value="CSD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CSD" evidence="2">
        <location>
            <begin position="4"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="81" mass="9404" checksum="004C7E0AC3019841" modified="2015-11-11" version="1">MLRMANGTVKWFNDKKGFGFISQDNGDDVFVHQSSIQSEGFRTLAEGDKVEFEIIKDQKATRPQKLLNYKPVKKHTLIFRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URC5</accession>
    <name>A0A0M2URC5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DDE_Tnp_1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02688</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000247">
        <property type="protein sequence ID" value="KKO18613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18613">
        <property type="protein sequence ID" value="KKO18613"/>
        <property type="gene ID" value="BROFUL_02688"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002559">
        <property type="entry name" value="Transposase_11"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01609">
        <property type="entry name" value="DDE_Tnp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DDE_Tnp_1" evidence="1">
        <location>
            <begin position="17"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="172" mass="19509" checksum="76FFBBBC9897D52B" modified="2015-11-11" version="1">MAVQRQVKQKVELGHNILVASDQWGFIVDHVVGEKQADVSLVIPLADRLLSRYGEGTIKSISFDKGFYKKENKELLSLYIPEVILPKKGKKNKAEQEEESGKTFKKLRHKHSAVESDINRLEHHGLDRCPDKGLHAFKRYCAMGVLAANLHKLGNVLQEKARKQCEKLRKAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URF6</accession>
    <name>A0A0M2URF6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02835</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000268">
        <property type="protein sequence ID" value="KKO18452.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18452">
        <property type="protein sequence ID" value="KKO18452"/>
        <property type="gene ID" value="BROFUL_02835"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3508"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002949">
        <property type="term" value="P:tRNA threonylcarbamoyladenosine modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000905">
        <property type="entry name" value="Gcp-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022496">
        <property type="entry name" value="T6A_TsaB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11735">
        <property type="entry name" value="PTHR11735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11735:SF11">
        <property type="entry name" value="PTHR11735:SF11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00814">
        <property type="entry name" value="TsaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03725">
        <property type="entry name" value="T6A_YeaZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TsaD" evidence="1">
        <location>
            <begin position="31"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18452.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="263" mass="29421" checksum="299EC6ACDFEB14C2" modified="2015-11-11" version="1">MRVLGIETSGDTGGVVLSKDFRIILSKEFGSMQHGKELVPAIKSAFHETGWSPEDIDLIAVDVGPGSYTGLRVGVTCAKTLAYALQIPVIDVPVFDIIAENYQRDLCKTVSRNPSSSAESMGDRKMFFNAVHREEFSLCPILDARRNHVYACIYTFAPVSLEQGLTGIQWKRETEFMVIQPEDLVPILPRPIIIFGNGVLPYKEVFQAKGIFIGKEEWAIPKVELVALLGEKMYESGRRCEIEKLLPLYLRQAEAIERQTGKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URM3</accession>
    <name>A0A0M2URM3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_02599</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000239">
        <property type="protein sequence ID" value="KKO18718.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18718">
        <property type="protein sequence ID" value="KKO18718"/>
        <property type="gene ID" value="BROFUL_02599"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025662">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025944">
        <property type="entry name" value="Sigma_54_int_dom_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00158">
        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01590">
        <property type="entry name" value="HTHFIS"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00675">
        <property type="entry name" value="SIGMA54_INTERACT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00688">
        <property type="entry name" value="SIGMA54_INTERACT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="7">
        <location>
            <begin position="7"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="6">
        <location>
            <begin position="146"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="5">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18718.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="453" mass="50322" checksum="0E5A06CDD24B2799" modified="2015-11-11" version="1">MGINDTVILVVDDKKEHATATAEALQRIGHTCLIATSGKEGLKYIEAGNVDIVITDLIMYDIDGLQILKATKERLPEAEVVLITGYGTVETAVDAMQKGAATYLLKPININHLRAEIAKLVEKQMLVRNNKELHKQLDEKFGLNGIIGNSPKIQKILNIVNQISGTTATVLITGESGTGKELIAKTIHNNSPRKNKPMVILNSAAIPENLLESELFGHEKGAFTGALYQRKGKIECAHHSTLFLDEVGDMPLSTQVKLLRVIEDGVITRVGSNETIEVDVRLIAATNQDLEKLIKEGKFRNDLYFRLNVVSLKLPPLRERLEDTVLLIDAFLREYSQMHAKAVFQISSDARKILYKYPWPGNIRELKNCIESMVVVSTKETLGVEDIPDHIFQRSNEVLHSPGLVAGMTVEEAERELIKTTLTTVGGNREEAAKMLGIGERTLYRKLDRYGLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URP8</accession>
    <name>A0A0M2URP8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_03042</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18315.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18315">
        <property type="protein sequence ID" value="KKO18315"/>
        <property type="gene ID" value="BROFUL_03042"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3754"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036974">
        <property type="entry name" value="PUA_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041532">
        <property type="entry name" value="RlmI_PUA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019614">
        <property type="entry name" value="SAM-dep_methyl-trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10672">
        <property type="entry name" value="Methyltrans_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17785">
        <property type="entry name" value="PUA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PUA_3" evidence="5">
        <location>
            <begin position="5"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="domain" description="Methyltrans_SAM" evidence="4">
        <location>
            <begin position="155"/>
            <end position="329"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF10672"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF17785"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18315.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="377" mass="42070" checksum="4131FC216989F192" modified="2015-11-11" version="1">MIRHPQQHLRPGSLVEVISREGIFIGRGIYNKKSNIGIRLLTENIRETLDRGFFFKKLEQAKSLREEILGIQRTSNCYRLVHGEADGLSGLIIDKFADTFVVEPYSAGYLGIMEWIASSLQSLYAGSRIVVRQDERIAAKEGVSFAKIASAYASHDAVEIKEHNLKMTVNLKTGHKTGFFLDQRENRFVLSQYCKDRDVLDCFCYTGGFAISAMLAGARSATGIDLDEKALETARENARLNSVKVTFQHTNVFDYLRTMISKGVQTDVVILDPAKLAGCTEEIKRAHRTYGDINRLGMQVVKPGGLLLTCSCSGLVSEREFLSILTRSAAEAGVVLQIFQITGASPDHPFSTIFPEGRYLKAIFARVYPLMKNEEIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URR6</accession>
    <name>A0A0M2URR6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02971</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000280">
        <property type="protein sequence ID" value="KKO18335.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18335">
        <property type="protein sequence ID" value="KKO18335"/>
        <property type="gene ID" value="BROFUL_02971"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0110001">
        <property type="term" value="C:toxin-antitoxin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008201">
        <property type="entry name" value="HepT-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01934">
        <property type="entry name" value="DUF86"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-1277">Toxin-antitoxin system</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18335.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="66" mass="7729" checksum="5B047BEAF4C47C01" modified="2015-11-11" version="1">MQRDRAYMLDIIEAAKLAVSYIEDKRREDFLKDVQCQDAVIRRLEIIGEAARCITDKTKTAFPWLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URR7</accession>
    <name>A0A0M2URR7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Translation elongation factor Tu</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02741</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000255">
        <property type="protein sequence ID" value="KKO18562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18562">
        <property type="protein sequence ID" value="KKO18562"/>
        <property type="gene ID" value="BROFUL_02741"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3389"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009001">
        <property type="entry name" value="Transl_elong_EF1A/Init_IF2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004160">
        <property type="entry name" value="Transl_elong_EFTu/EF1A_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03143">
        <property type="entry name" value="GTP_EFTU_D3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50465">
        <property type="entry name" value="SSF50465"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="2" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GTP_EFTU_D3" evidence="3">
        <location>
            <begin position="11"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="57" mass="5833" checksum="8C03A8E94A4B4085" modified="2015-11-11" version="1">MTGVVSLTGGAEMVMPGDNVKVNVELLTAVAMDEGLRFAIREGGKTVGAGVVTKIIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URS7</accession>
    <name>A0A0M2URS7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02944</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000278">
        <property type="protein sequence ID" value="KKO18345.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18345">
        <property type="protein sequence ID" value="KKO18345"/>
        <property type="gene ID" value="BROFUL_02944"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18345.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="68" mass="7649" checksum="8333BBE027773914" modified="2015-11-11" version="1">MRKEYKREDLGKGISGKYFKEYKKVANLVLLSPDVAATFPDDASVNEALRSLMKIAQQSTGLTRQRSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US41</accession>
    <name>A0A0M2US41_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Beta-1,6-galactofuranosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02608</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18657">
        <property type="protein sequence ID" value="KKO18657"/>
        <property type="gene ID" value="BROFUL_02608"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="454" mass="52512" checksum="D3CE0AB319AFEFDB" modified="2015-11-11" version="1">MSMANTNSIKEKFSPIQKLNSEVYDILVHDKLEFNPLVRLKKSAKQSVRRYKAGGLKAVFHNSLKQLMNRINTPSGKKKILYITITPSFNLLRQSIYIRKKEDYETILLMESPWLFKLMEQHFDAVYMYDTYYELATILKEAKPFIIHVQGSMLGSDFLCILARLLNETKVVFEFFDVPSLCIAKEDGMPVWGKKNTELGFFAEQYACENAHGIILGYSYEAAKILKERYCVKAPVLEFHTYVCSEFVSKQNTTRYSEEDGKIHLVYGGNVAPSNLPQKIFADVQFHELIKGITKQGLYFDIYASPHVSPVKFELFFSDYLAISRENNLFRLKKGLFPDTAAHEFSRYDFGMMVYLFNQGTFLNDALQTRLPGKFFLYLEAGLPIVISEELAYVAKIVREYEIGIVVRQAEIDNLSKIIPGYHYEQLKNNVIAARKELSMETHIEKLLKFYENL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US48</accession>
    <name>A0A0M2US48_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Big-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02834</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the intimin/invasin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000267">
        <property type="protein sequence ID" value="KKO18470.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18470">
        <property type="protein sequence ID" value="KKO18470"/>
        <property type="gene ID" value="BROFUL_02834"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039448">
        <property type="entry name" value="Beta_helix"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003344">
        <property type="entry name" value="Big_1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008964">
        <property type="entry name" value="Invasin/intimin_cell_adhesion"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006626">
        <property type="entry name" value="PbH1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13229">
        <property type="entry name" value="Beta_helix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02369">
        <property type="entry name" value="Big_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00710">
        <property type="entry name" value="PbH1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49373">
        <property type="entry name" value="SSF49373"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="SSF49899"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="SSF51126"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51127">
        <property type="entry name" value="BIG1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Big-1" evidence="3">
        <location>
            <begin position="209"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="291"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="291"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="311"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="499"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18470.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="499" mass="51888" checksum="83A508910BA7F325" modified="2015-11-11" version="1" fragment="single">FHQLLLTLQGSGGFPVKHYVGYSGGSGTPPALKAVGTSGNPITFTSNAASPAPGDWRGIRFSDHTNDAETIMDYCTVEYGGHSGENSNIYCNEASPAIQRCLMRNSDGNGILATGSGAHPLISCSTIRNNNYGVYAQSSANPTVVNCNIHGNTSYGIYNATSSLTLAAADNWWGHTSGPSGVGPGSGDAVSNSVDYTPWMASFDSCLETIVLSPASATNPIGSQHTVTATVTNDALEPVADIAVSFEIVFGPHAGATGTDTTDSNGQATFTYTGTLEGTDIIEASFTDFHGRTITSGPVTKTWESSSSTPTPTPTPTPSPTPTPEPTPSPTPSPTPCPTPSPTPTPAACPCPDAEACYSFDEGNGNVAGDSSGNGHNGAIAGASWTIGNDGSGLSFDGVDDEVSIPVLNSEEVSFSAWFYKNANNPLRYSFIFDGIRTHSNSQLNEGFALKFLKRNPNVVGFAVVTQNSNGRRKLRTASYDLGNSVGSWYHVAGTYDKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USC5</accession>
    <name>A0A0M2USC5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FHA domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02522</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18742.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18742">
        <property type="protein sequence ID" value="KKO18742"/>
        <property type="gene ID" value="BROFUL_02522"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00060">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000253">
        <property type="entry name" value="FHA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008984">
        <property type="entry name" value="SMAD_FHA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00498">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49879">
        <property type="entry name" value="SSF49879"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50006">
        <property type="entry name" value="FHA_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FHA" evidence="1">
        <location>
            <begin position="26"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18742.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="69" mass="7792" checksum="53AA64F505BB0E38" modified="2015-11-11" version="1">MSVRMAELIDVTIPGQKKSYPLKDITIIGRASTTDIKLDDLMVSRHHARVSRWNEGYVVEDLAVSTESF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USE7</accession>
    <name>A0A0M2USE7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02282</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO18988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18988">
        <property type="protein sequence ID" value="KKO18988"/>
        <property type="gene ID" value="BROFUL_02282"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006158">
        <property type="entry name" value="Cobalamin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034466">
        <property type="entry name" value="Methyltransferase_Class_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02310">
        <property type="entry name" value="B12-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01123">
        <property type="entry name" value="methyltransferase_(Class_B)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="B12-binding" evidence="2">
        <location>
            <begin position="1"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="3">
        <location>
            <begin position="184"/>
            <end position="403"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="454" mass="51118" checksum="E859B4B97C02E4BD" modified="2015-11-11" version="1">MKILLISTNNEKYPYPVAPIGAAYIAKALRNNGYHVKIIDLSFVEDDCAVIRDVLKDFVPHVIGISIRNIDNLTYGKSIFYMPRIRHLVNFIKRHTSVPLVVGGSGFSIFPEEVLRYLELETGIVGEGETAFALVVGAIEKGKDLDNIQNLCYLKGNKFYSNSIAYTQINNRPDRSLLSNRMYFELGGMANIQSKRGCPFQCTYCTYPCIEGNKMRLREPMDVVEELKEMRIDYGIDYVFFVDDIFNFPEEHAVAICEEIVRTKVKVNWTCFATPKGMTQKLAALMKTAGCKGVEFGSDAGSEKTLKGLSKHFTHDDIAYAAECCGEIGLPNAHYIIIGGPGEDHGTLQETFAFFEKINPTAVIALLGLRIYPNTRLHSKSIEDGVIEKDRNLLEPAFYLSPEMDTTVIFRNIAEHARKHQNWIVPGLDIRCDTNMLAVLRKMGRKGPLWDMLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USF1</accession>
    <name>A0A0M2USF1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03367</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17916">
        <property type="protein sequence ID" value="KKO17916"/>
        <property type="gene ID" value="BROFUL_03367"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006493">
        <property type="term" value="P:protein O-linked glycosylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037919">
        <property type="entry name" value="OGT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013105">
        <property type="entry name" value="TPR_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44366">
        <property type="entry name" value="PTHR44366"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07719">
        <property type="entry name" value="TPR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="11"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="10"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="109"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="143"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="177"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="211"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="245"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="320"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="354"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="388"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="422"/>
            <end position="455"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="456"/>
            <end position="489"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="489"/>
            <end position="516"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO17916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="518" mass="58635" checksum="46DF6AA45DF281E4" modified="2015-11-11" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USI0</accession>
    <name>A0A0M2USI0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02707</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000251">
        <property type="protein sequence ID" value="KKO18590.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18590">
        <property type="protein sequence ID" value="KKO18590"/>
        <property type="gene ID" value="BROFUL_02707"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="25"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="83"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="115"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="154"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="186"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="196"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18590.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="225" mass="25006" checksum="B8472C478FF48252" modified="2015-11-11" version="1">MSEILEIPDQAAQQKRPDERPVGKMIVVIFMAYLVCFSGFLLYGIIQFWPVSFALPVKDGAPPDQLVIFLFKKFPISDEKRTLLIVILSGALGSLVHALRSFYKYVGNKELVWSWLAMYIMLPFVGATLGLVLYLIILGGFFSSQSTMQQTNPFGFMAMAALAGLFSEQAILKLKTVAETLLTKPETMGNPLSVDKEGLESKEKQEDAEKKPPQQNPETTSGKPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USI8</accession>
    <name>A0A0M2USI8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02463</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18802.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18802">
        <property type="protein sequence ID" value="KKO18802"/>
        <property type="gene ID" value="BROFUL_02463"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18802.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="45" mass="4953" checksum="DA08D848489638A7" modified="2015-11-11" version="1">MSERLLRGVYTEHIECAHNDTCSVPSKCRSLSLRGAFSEAISPLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USP5</accession>
    <name>A0A0M2USP5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Endoribonuclease YbeY</fullName>
            <ecNumber evidence="7">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">ybeY</name>
        <name evidence="8" type="ORF">BROFUL_03299</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="7">Binds 1 zinc ion.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the endoribonuclease YbeY family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000301">
        <property type="protein sequence ID" value="KKO18021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18021">
        <property type="protein sequence ID" value="KKO18021"/>
        <property type="gene ID" value="BROFUL_03299"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4067"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004521">
        <property type="term" value="F:endoribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00009">
        <property type="entry name" value="Endoribonucl_YbeY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023091">
        <property type="entry name" value="MetalPrtase_cat_dom_sf_prd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002036">
        <property type="entry name" value="YbeY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020549">
        <property type="entry name" value="YbeY_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46986">
        <property type="entry name" value="PTHR46986"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02130">
        <property type="entry name" value="YbeY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00043">
        <property type="entry name" value="TIGR00043"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01306">
        <property type="entry name" value="UPF0054"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 7" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 7" id="KW-0540">Nuclease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0690">Ribosome biogenesis</keyword>
    <keyword evidence="7" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="6 7" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="7">
        <location>
            <position position="119"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="123"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="129"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00009"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="157" mass="17511" checksum="EFF5C317A2202CE3" modified="2015-11-11" version="1">MRTSCSPATPKVKLEIINLQKCYPIAPGRIKKLVRRIFSGENKDAELNLVFIDNKGIKKINNTFLGHNYATDVLSFAYHEQSPKNTIAGEILVSVEMAVQQAKSRGCSVEGEIALYLVHGVLHLLGYDDRKKKDAQRMHQREGALLAECGYCVPIPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USQ8</accession>
    <name>A0A0M2USQ8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02660</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000244">
        <property type="protein sequence ID" value="KKO18635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18635">
        <property type="protein sequence ID" value="KKO18635"/>
        <property type="gene ID" value="BROFUL_02660"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="57" mass="6758" checksum="DF95296258B0595B" modified="2015-11-11" version="1" fragment="single">MEGWYVWNSAYLVWCPLTNRFSLSLTSLLSEIRFSVNAHMMQFRLFMACFLVYAQAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT07</accession>
    <name>A0A0M2UT07_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02530</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18750">
        <property type="protein sequence ID" value="KKO18750"/>
        <property type="gene ID" value="BROFUL_02530"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020945">
        <property type="entry name" value="DMSO/NO3_reduct_chaperone"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036411">
        <property type="entry name" value="TorD-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02613">
        <property type="entry name" value="Nitrate_red_del"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89155">
        <property type="entry name" value="SSF89155"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="264" mass="30087" checksum="FEFA63B94B3C0764" modified="2015-11-11" version="1">MEADRNSLLDQEVASRVDSLLTRSSMYQVLSACFLYPTEKNLSVLKTPEIQEYQKALVLCYESIDDGVELNRCFGEIQEAFAATSIEILQSEYQRIVGHTMSKECPLYETQYGASQVFQQVQELGDIQGFYRAFGLDTSEIEKERCDHVSVELEFMHFLLYKQAYAMENHGDEKTQICVDAQKKFLKEHIGKWVPLFSVLFARKAGEGFYRAVSALTKEFLRLEIKLMGVKTEIYKESDLNQEAVAGASDECLSCASSEDFSEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT11</accession>
    <name>A0A0M2UT11_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">3-oxoacyl-(Acyl-carrier protein) reductase</fullName>
            <ecNumber evidence="2">1.1.1.100</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">fabG</name>
        <name evidence="2" type="ORF">BROFUL_02281</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.100" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO18987.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18987">
        <property type="protein sequence ID" value="KKO18987"/>
        <property type="gene ID" value="BROFUL_02281"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2844"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004316">
        <property type="term" value="F:3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18987.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="249" mass="26770" checksum="85E5E7FCD6F8EFDC" modified="2015-11-11" version="1">MKMSTQRVVLVTGGSKGIGKAISAAFAANGDTVIINYHTSFDEANKVKLELLPGNTSVSLERADVSDYLQVKRMVADILEKYGKIDVVVNNAGIVRDGFLMLMSERDWNDVIAINLNGVFNCSKAVSESMISQRNGIIINIASLSGITGLSGQANYSAAKGGVIAFTKALSKELAPFNIRVNAVAPGVIETEIVDSLNERVKNNFLNAIPMKRFGKPDEVASVVKFLASPDASISREKLFALREDSIDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT73</accession>
    <name>A0A0M2UT73_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Two-component sensor kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02058</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19258.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19258">
        <property type="protein sequence ID" value="KKO19258"/>
        <property type="gene ID" value="BROFUL_02058"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031621">
        <property type="entry name" value="HisKA_7TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16927">
        <property type="entry name" value="HisKA_7TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="36"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="65"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="97"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="129"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="171"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="199"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="233"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="3">
        <location>
            <begin position="599"/>
            <end position="836"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19258.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="855" mass="96779" checksum="7FADC018FBB2E793" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT91</accession>
    <name>A0A0M2UT91_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02009</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000203">
        <property type="protein sequence ID" value="KKO19278.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19278">
        <property type="protein sequence ID" value="KKO19278"/>
        <property type="gene ID" value="BROFUL_02009"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2502"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011045">
        <property type="entry name" value="N2O_reductase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50974">
        <property type="entry name" value="SSF50974"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005643995" evidence="1">
        <location>
            <begin position="24"/>
            <end position="349"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19278.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="349" mass="37718" checksum="676A61246B540099" modified="2015-11-11" version="1">MKVSRNIFFFIALVLFTSMAPRAESYEKRTTPGETLSRFILPNVQRPSLTVSNEDVDTEETRFRKLKQWYELTTHSSSTFSVGFQPYGVTFDGTNIWVTNSGSISITKLRGSDGTVLGNYAVGFIPRGIAFDGANIWVANSGGDSITKMRASDGAVLDTYVVGFYPYGVAFDGENIWVTNSGSNDVTKLRASDGTILGTYAVGLNPRGVIFDGANVWVVNSNSNSVTKLRASDGTLLSTYAVGWIPKWVAFDGANIWITNYGSGKVTKLRANDGTTLGTYAVGMYPYGIAFDGANIWVTNAGSNDVTKMRASDGAVIGTYDVGINPRGIVFDGANIWVANYDSDTITKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTB3</accession>
    <name>A0A0M2UTB3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CO-methylating acetyl-CoA synthase</fullName>
            <ecNumber evidence="1">2.3.1.169</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_02448</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.169" evidence="1"/>
    <dbReference type="EMBL" id="LAQJ01000232">
        <property type="protein sequence ID" value="KKO18855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18855">
        <property type="protein sequence ID" value="KKO18855"/>
        <property type="gene ID" value="BROFUL_02448"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3043"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018492">
        <property type="term" value="F:carbon-monoxide dehydrogenase (acceptor) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043884">
        <property type="term" value="F:CO-methylating acetyl-CoA synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006084">
        <property type="term" value="P:acetyl-CoA metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1650.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2030">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045822">
        <property type="entry name" value="ACS_CODH_B_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004461">
        <property type="entry name" value="CO_DH/Ac-CoA_synth_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038571">
        <property type="entry name" value="CO_DH/Ac-CoA_synth_bsu_3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041350">
        <property type="entry name" value="CODH_A_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016099">
        <property type="entry name" value="Prismane-like_a/b-sand"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011254">
        <property type="entry name" value="Prismane-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42281">
        <property type="entry name" value="PTHR42281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19436">
        <property type="entry name" value="ACS_CODH_B_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03598">
        <property type="entry name" value="CdhC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18537">
        <property type="entry name" value="CODH_A_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56821">
        <property type="entry name" value="SSF56821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00316">
        <property type="entry name" value="cdhC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0533">Nickel</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="CODH_A_N" evidence="7">
        <location>
            <begin position="22"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="domain" description="ACS_CODH_B_C" evidence="8">
        <location>
            <begin position="484"/>
            <end position="726"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022596"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF18537"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF19436"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="727" mass="79809" checksum="0BF8DDF6F0B2C908" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTE2</accession>
    <name>A0A0M2UTE2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01993</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19333">
        <property type="protein sequence ID" value="KKO19333"/>
        <property type="gene ID" value="BROFUL_01993"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006158">
        <property type="entry name" value="Cobalamin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036724">
        <property type="entry name" value="Cobalamin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034466">
        <property type="entry name" value="Methyltransferase_Class_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02310">
        <property type="entry name" value="B12-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01123">
        <property type="entry name" value="methyltransferase_(Class_B)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52242">
        <property type="entry name" value="SSF52242"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="B12-binding" evidence="2">
        <location>
            <begin position="1"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="3">
        <location>
            <begin position="160"/>
            <end position="401"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="583" mass="67641" checksum="A16E72AD23D0CC5A" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTG1</accession>
    <name>A0A0M2UTG1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptidase_M56 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01930</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000197">
        <property type="protein sequence ID" value="KKO19358.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19358">
        <property type="protein sequence ID" value="KKO19358"/>
        <property type="gene ID" value="BROFUL_01930"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008756">
        <property type="entry name" value="Peptidase_M56"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05569">
        <property type="entry name" value="Peptidase_M56"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="16"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="75"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M56" evidence="2">
        <location>
            <begin position="89"/>
            <end position="241"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05569"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19358.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="260" mass="29080" checksum="E1C56D01E99D6E2B" modified="2015-11-11" version="1">MKYFIKVNGQEEKERAYFLLIVFLNLVIFSVIVTGVLIGIKGYVSDTKFTYKAVTCCGGICSKCIFTLHTLATSLPWFCVAILFTGIGKAIYKAVQMLFMHGRFIRSLTPRFIVNCSGLKESPFPAHLENQWVLFENAALRYAFTSGIWKPKIYLSTGICSYLTAKELQSVILHEAHHIRQKAPFKLFVLQILSALNFFLPVNRHLLGRYSSLSEKAADDAAVKISGEPLELASALLKLSRFRTLAALSPAVAFSREQGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTJ6</accession>
    <name>A0A0M2UTJ6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF3485 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02175</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000214">
        <property type="protein sequence ID" value="KKO19132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19132">
        <property type="protein sequence ID" value="KKO19132"/>
        <property type="gene ID" value="BROFUL_02175"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014263">
        <property type="entry name" value="Methanolan_biosynth_EpsI"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11984">
        <property type="entry name" value="DUF3485"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02914">
        <property type="entry name" value="EpsI_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF3485" evidence="1">
        <location>
            <begin position="11"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF11984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="219" mass="25095" checksum="7477B79ACA07C4AA" modified="2015-11-11" version="1">MSINKKGWITIAILLFTSIYCFTFPKAKYESQNIISQLKIPLEFTGWLGTDTEAEQDWNSDDEKYAFISQTLDREYINKDGDSLFLLILDAGNFHNPKVCSSSSGFKVTELNDSEFHVLNRDLRAYCLYVEKDAEGFLMIYWMCIDKNIVDWTGQKIKQLWFSLINKKRNGLMVRLSIPTREDSIASALQLANEFLADLGSAIPPEQTEYIFGNPKTAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTK0</accession>
    <name>A0A0M2UTK0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02333</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18940.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18940">
        <property type="protein sequence ID" value="KKO18940"/>
        <property type="gene ID" value="BROFUL_02333"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18940.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="92" mass="10757" checksum="DAF6F8E3206C8969" modified="2015-11-11" version="1">MMQKEMEKQNLVLRYNLHKTEKELAVSLTHNREVLDKLLREYAGEIDRVNKARCLNERIIRPGGEKTQGFDATLKINFFPSQRKSGILQKAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTS6</accession>
    <name>A0A0M2UTS6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03427</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000313">
        <property type="protein sequence ID" value="KKO17879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17879">
        <property type="protein sequence ID" value="KKO17879"/>
        <property type="gene ID" value="BROFUL_03427"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008203">
        <property type="entry name" value="AF2212-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024069">
        <property type="entry name" value="AF2212-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01954">
        <property type="entry name" value="DUF104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="55" mass="6239" checksum="834D7C1AB46F8068" modified="2015-11-11" version="1">MGKTIRARFFKGVIKPLEEIDTTDGKEVFVTIIEVHTSSKEDAFERSTGEMEGYN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTY7</accession>
    <name>A0A0M2UTY7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">UPF0033 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03395</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sulfur carrier protein TusA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17944">
        <property type="protein sequence ID" value="KKO17944"/>
        <property type="gene ID" value="BROFUL_03395"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.110.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001455">
        <property type="entry name" value="TusA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036868">
        <property type="entry name" value="TusA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01206">
        <property type="entry name" value="TusA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64307">
        <property type="entry name" value="SSF64307"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01148">
        <property type="entry name" value="UPF0033"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UPF0033" evidence="2">
        <location>
            <begin position="7"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS01148"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO17944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="76" mass="8521" checksum="56806AC8C89787D7" modified="2015-11-11" version="1">MKADETLDCYGLMCPMPIFKTSVKMKDVAIGKVLEVIATDEGIKKDIASWCNTTGNELLEICEEDGEIHVFIKRLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTZ7</accession>
    <name>A0A0M2UTZ7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02849</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000268">
        <property type="protein sequence ID" value="KKO18466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18466">
        <property type="protein sequence ID" value="KKO18466"/>
        <property type="gene ID" value="BROFUL_02849"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="26"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="80"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="105"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="157" mass="17242" checksum="A7EA14CC21398BC2" modified="2015-11-11" version="1">MTDVEEGKDIISLDAGFPDRVLSTSFYLSLITIVGSLSYMSFMGTVSIAVGCGISLLLYKMLWWAVQYAVRHKRSEIKGFFLKVSLVKYGIVGVMLLSVCLFLDVHIVALALGLSMVLIVLVLKIVSRILVNYMNKSIKMSSRNLGNISANVSKKGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU22</accession>
    <name>A0A0M2UU22_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01734</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000180">
        <property type="protein sequence ID" value="KKO19563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19563">
        <property type="protein sequence ID" value="KKO19563"/>
        <property type="gene ID" value="BROFUL_01734"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="162" mass="17761" checksum="9E0DC6FDC5B4F846" modified="2015-11-11" version="1">MNGIFNNNFLIGFLLAKDLPRNEALTVGLASGMFPPNNMVGPLLLKPQIDTRIDLETKNTSLQGSLNNIQGELIKAKNELASLNRPLKVESRENGGVLNFTISGAETTTLKFKNENAKNGYEITDDKNLNTSKGSGSVDLVITPNDGFKREFTFEKKVTQES</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU60</accession>
    <name>A0A0M2UU60_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02168</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000214">
        <property type="protein sequence ID" value="KKO19125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19125">
        <property type="protein sequence ID" value="KKO19125"/>
        <property type="gene ID" value="BROFUL_02168"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006158">
        <property type="entry name" value="Cobalamin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034466">
        <property type="entry name" value="Methyltransferase_Class_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02310">
        <property type="entry name" value="B12-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01123">
        <property type="entry name" value="methyltransferase_(Class_B)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="B12-binding" evidence="2">
        <location>
            <begin position="5"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="3">
        <location>
            <begin position="164"/>
            <end position="394"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="486" mass="55653" checksum="FF1FE097A6389299" modified="2015-11-11" version="1">MKRKMMLINPHKPGRHGEESITVIVQMPLNLAYVAALTPGDWDFDVIDENLELAIDDNGELTFKPVDLVCITAVTYQSPRAYKIAEACRKKGMTVIMGGIHASVMPEEAANYVDSVFVGEAEEVWPQVIKDFEAGKLKKIYEGGLPPLSLMKKVYPNRELMKKKYNYKFSSIVTTKGCPNYCDFCSVPTFQGRKFRERPYEDVLDEMAATDYKGLMLAEDNFYGHGKKSNERARDLFKGMVDRGIHKDWLGFTALNISQDAETLDYMAKSGNFGMLIGIESTNEAVLEKMNKRVNLKLGTDSYFDCIQKIHNAGLVVWGSVVFGADGDDKDSFKRMTEFILENNIDILTFGINCPFPKTQLYSRLDSEKRIFRKNYPEDWQYYDTAHVVHRLVDMTLEDFIEGMQYVYDHVYAGDNLRTRFRNSIKTTKNPRNSMFAFRVGSDWKQVFEQVLLNLKELYDSGDYYKDCYKSSAVTVSKPIMETVST</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU63</accession>
    <name>A0A0M2UU63_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acyl carrier protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02173</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000214">
        <property type="protein sequence ID" value="KKO19130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19130">
        <property type="protein sequence ID" value="KKO19130"/>
        <property type="gene ID" value="BROFUL_02173"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1200.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036736">
        <property type="entry name" value="ACP-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009081">
        <property type="entry name" value="PP-bd_ACP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00550">
        <property type="entry name" value="PP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47336">
        <property type="entry name" value="SSF47336"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50075">
        <property type="entry name" value="CARRIER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0596">Phosphopantetheine</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Carrier" evidence="2">
        <location>
            <begin position="4"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="modified residue" description="O-(pantetheine 4'-phosphoryl)serine" evidence="1">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00258"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="89" mass="9937" checksum="866C6FA363322CDE" modified="2015-11-11" version="1">MNAEEIEKGVTAIVAEVTELDEKEIWDKRDANFFKDLEIDSLLALEILALIEKKFKVQIPEEKLVDITCLSATIDLTKSVLAESGKLSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU68</accession>
    <name>A0A0M2UU68_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Protein translocase subunit SecY</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">secY</name>
        <name evidence="3" type="ORF">BROFUL_01904</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Component of the Sec protein translocase complex. Heterotrimer consisting of SecY, SecE and SecG subunits. The heterotrimers can form oligomers, although 1 heterotrimer is thought to be able to translocate proteins. Interacts with the ribosome. Interacts with SecDF, and other proteins may be involved. Interacts with SecA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the SecY/SEC61-alpha family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19377">
        <property type="protein sequence ID" value="KKO19377"/>
        <property type="gene ID" value="BROFUL_01904"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2373"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0065002">
        <property type="term" value="P:intracellular protein transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006605">
        <property type="term" value="P:protein targeting"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043952">
        <property type="term" value="P:protein transport by the Sec complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3370.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01465">
        <property type="entry name" value="SecY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026593">
        <property type="entry name" value="SecY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002208">
        <property type="entry name" value="SecY/SEC61-alpha"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023201">
        <property type="entry name" value="SecY_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10906">
        <property type="entry name" value="PTHR10906"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00344">
        <property type="entry name" value="SecY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004557">
        <property type="entry name" value="SecY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103491">
        <property type="entry name" value="SSF103491"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00967">
        <property type="entry name" value="3a0501s007"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0653">Protein transport</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0811">Translocation</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="18"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="75"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="121"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="151"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="188"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="225"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="280"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="322"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="381"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="412"/>
            <end position="433"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU004349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="460" mass="50669" checksum="E50B3E102B0FB37A" modified="2015-11-11" version="1">MIEQFGNIFRIPELRKKVLITLGLIALCRVGVYIPIPGIDTTVLKSYFQQFTQTGVGQLLGLVDMFAGGALTSGAIFGLGVMPYISASIIFQLLVGVVPYLERLQKEGEAGRKKINQYTRLATVGLCLFQAFVMTRTLYTVEFNGMPVIPVYLQGISFQMMAALLLTTGTMTLMWIGEQIEEHGIGSGISIVIMVGIIERLPWAFSQVMQSFTFSVTPAEHQIGIVKLIVLLGMFFAIVGGVVYITQGQRRIPVQQAKHTRGRKVYGGQRHFLPLRVNQAGVMPIIFAQSLLIFPAAIMQGIQVRFEPGSFGYWITSRLSEVLQGGVIYVVLYVLLITFFCYFWTAIQFNPKEMSNNMKDYGSFIPGIRPGHRTAEYLEGIMGKITLAGAAFLALIAILPKLVAGGFELNRAIAGFYGGTGLLIIVGVALDMVQRIESHMIMRQYSGFLSGGSRIRGRMG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUF9</accession>
    <name>A0A0M2UUF9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03206</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000293">
        <property type="protein sequence ID" value="KKO18104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18104">
        <property type="protein sequence ID" value="KKO18104"/>
        <property type="gene ID" value="BROFUL_03206"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3952"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027612">
        <property type="entry name" value="Put_MTase_LIC12133"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04325">
        <property type="entry name" value="MTase_LIC12133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="270" mass="31492" checksum="5E0B7B3D0DDC79ED" modified="2015-11-11" version="1">MKSILKDLIPPIFVRSYRRVASQYGFFGEYPTWEDALKDSSGYGSELILEKVKDALLKVKNGDAVYERDSVLFDKIEYSWPVLAGLMWIASQNNNSLNLIDYGGSLGSTYFQNRKFLENLQELQWNIIEQARFVECGKLYFEDEHLKFYKNMDDCIKDQHPETIVLSSVLPYLERPYALLQDVLNLNFTYIIVDRTPFLAKGKDRLTVQKVSPAIYEASYPVWFLSEMKFLDFLKNDYELVVDFDALAGQIKLEDTIANDKGFIFRNRRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUT9</accession>
    <name>A0A0M2UUT9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Putative cytochrome c</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_02536</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18756">
        <property type="protein sequence ID" value="KKO18756"/>
        <property type="gene ID" value="BROFUL_02536"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019020">
        <property type="entry name" value="Cyt-c552/DMSO_Rdtase_haem-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13442">
        <property type="entry name" value="Cytochrome_CBB3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09459">
        <property type="entry name" value="EB_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0249">Electron transport</keyword>
    <keyword evidence="2 6" id="KW-0349">Heme</keyword>
    <keyword evidence="5 6" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="494"/>
            <end position="514"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="8">
        <location>
            <begin position="48"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="8">
        <location>
            <begin position="164"/>
            <end position="260"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="528" mass="59453" checksum="55FE6D660A7022E0" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUW4</accession>
    <name>A0A0M2UUW4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Flagellar motor switch protein FliG</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="primary">fliG</name>
        <name evidence="13" type="ORF">BROFUL_03006</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Bacterial flagellum basal body</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
            <orientation evidence="2">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the FliG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18279.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18279">
        <property type="protein sequence ID" value="KKO18279"/>
        <property type="gene ID" value="BROFUL_03006"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3714"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009425">
        <property type="term" value="C:bacterial-type flagellum basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003774">
        <property type="term" value="F:cytoskeletal motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000090">
        <property type="entry name" value="Flg_Motor_Flig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023087">
        <property type="entry name" value="Flg_Motor_Flig_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011002">
        <property type="entry name" value="FliG_a-hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032779">
        <property type="entry name" value="FliG_M"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028263">
        <property type="entry name" value="FliG_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30534">
        <property type="entry name" value="PTHR30534"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01706">
        <property type="entry name" value="FliG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14841">
        <property type="entry name" value="FliG_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14842">
        <property type="entry name" value="FliG_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00954">
        <property type="entry name" value="FLGMOTORFLIG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48029">
        <property type="entry name" value="SSF48029"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00207">
        <property type="entry name" value="fliG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="13" id="KW-0966">Cell projection</keyword>
    <keyword evidence="6" id="KW-0145">Chemotaxis</keyword>
    <keyword evidence="13" id="KW-0969">Cilium</keyword>
    <keyword evidence="7" id="KW-0283">Flagellar rotation</keyword>
    <keyword evidence="13" id="KW-0282">Flagellum</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FliG_N" evidence="12">
        <location>
            <begin position="2"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="domain" description="FliG_M" evidence="11">
        <location>
            <begin position="105"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="domain" description="FliG_C" evidence="10">
        <location>
            <begin position="207"/>
            <end position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010299"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00021870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF01706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF14841"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF14842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO18279.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="326" mass="36469" checksum="4E53EAE672AE5CBF" modified="2015-11-11" version="1">MLSTLDADTATEVIKEFSDEQIAAITAAMTDIERIDKEVVEKVLFDLSTELKSNEKVVKYDNNSFKKLLEKAIGVQKSEEIITSVEEGALFPAPFYAIRESSDEDVLRILVGEHPQTIALVLSYINSQRAAKILANFPTELQSEIIMRIATMETPPTKLLLQVNEVVVSKIKSDDRRQKTPTKKKYKLASEIIGNMEGTADKNVIDQISYKNPELAEEIKKLLFTFDDIVNVQDEALRKILAEVDNNVIALALKTATPEIEEKFFKNMSKRVGDSVREVKDLLGPRLLSEVEAAQQQIVDAIKRLETKGEAVLKKKGAKGSVDKFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV05</accession>
    <name>A0A0M2UV05_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01396</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000145">
        <property type="protein sequence ID" value="KKO19883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19883">
        <property type="protein sequence ID" value="KKO19883"/>
        <property type="gene ID" value="BROFUL_01396"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="4"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="121" mass="13926" checksum="DF5155742A5E27D6" modified="2015-11-11" version="1">MRKKLLIIEDEDEFFFFYEMMLENTDYAVRRAVDGVQAFEMIKNEKPDLIILDLLLDQMKGEDFLKQLKSNPGCVNIPVIIASSFSPRAYKSIFDIDPSLTFLEKPFSQEKLLAGIVARIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV80</accession>
    <name>A0A0M2UV80_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02915</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18409">
        <property type="protein sequence ID" value="KKO18409"/>
        <property type="gene ID" value="BROFUL_02915"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="31"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="133" mass="15083" checksum="F9B13CF91C8BD44C" modified="2015-11-11" version="1">MEEKVEDKGEGKNNETERGEHMNGFFISKRSLWLVAGGAAGVLAAIGISKLSKKMRPAAVGVTKEGLAFKEWLVANYEKTKENIEDIVAEAKYVHQKDLETTVKTEKKEEDLLKKVEQMVEEVLRQRYKKEEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVA0</accession>
    <name>A0A0M2UVA0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Precorrin-2 dehydrogenase</fullName>
            <ecNumber evidence="3">1.3.1.76</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_02863</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>NAD(+) + precorrin-2 = 2 H(+) + NADH + sirohydrochlorin</text>
            <dbReference type="Rhea" id="RHEA:15613"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58351"/>
            <dbReference type="ChEBI" id="CHEBI:58827"/>
            <dbReference type="EC" id="1.3.1.76"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Porphyrin-containing compound metabolism; siroheme biosynthesis; sirohydrochlorin from precorrin-2: step 1/1.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.3.1.76" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000270">
        <property type="protein sequence ID" value="KKO18429.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18429">
        <property type="protein sequence ID" value="KKO18429"/>
        <property type="gene ID" value="BROFUL_02863"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00262">
        <property type="reaction ID" value="UER00222"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004325">
        <property type="term" value="F:ferrochelatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043115">
        <property type="term" value="F:precorrin-2 dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019354">
        <property type="term" value="P:siroheme biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.610">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028161">
        <property type="entry name" value="Met8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042518">
        <property type="entry name" value="SirC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028281">
        <property type="entry name" value="Sirohaem_synthase_central"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006367">
        <property type="entry name" value="Sirohaem_synthase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35330">
        <property type="entry name" value="PTHR35330"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14824">
        <property type="entry name" value="Sirohm_synth_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01470">
        <property type="entry name" value="cysG_Nterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0520">NAD</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sirohm_synth_M" evidence="7">
        <location>
            <begin position="117"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012400"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF14824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18429.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="213" mass="23545" checksum="9C40A061423ADAD2" modified="2015-11-11" version="1">MAKYYPIFLNIQDKKCVVVGGGNVAWRKVCSLKEAGAKVTVVSPDFCPELERETGVERIQQKYTTDILKGAALVVASTDDGVVNKKVYSDAMERGILVNVVDKPDLCSFIVPASIQRGDLCISISTGGASPALARNIREYLEGQFGAEYGEFTHLLSEVRQKMLLEIKDEAIRRDILQRIAGFDILEIIKRKGVSEAKRKILEIVSEKIPGDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVA5</accession>
    <name>A0A0M2UVA5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_01775</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000185">
        <property type="protein sequence ID" value="KKO19515.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19515">
        <property type="protein sequence ID" value="KKO19515"/>
        <property type="gene ID" value="BROFUL_01775"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004869">
        <property type="entry name" value="MMPL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000731">
        <property type="entry name" value="SSD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03176">
        <property type="entry name" value="MMPL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50156">
        <property type="entry name" value="SSD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="219"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="242"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="268"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="313"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="339"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="412"/>
            <end position="429"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="616"/>
            <end position="634"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="641"/>
            <end position="661"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="667"/>
            <end position="689"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="716"/>
            <end position="735"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="741"/>
            <end position="767"/>
        </location>
    </feature>
    <feature type="domain" description="SSD" evidence="7">
        <location>
            <begin position="245"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="domain" description="SSD" evidence="7">
        <location>
            <begin position="639"/>
            <end position="766"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19515.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="771" mass="85931" checksum="7F09B8438337BB39" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVB9</accession>
    <name>A0A0M2UVB9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">FHA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01274</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20003">
        <property type="protein sequence ID" value="KKO20003"/>
        <property type="gene ID" value="BROFUL_01274"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00060">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000253">
        <property type="entry name" value="FHA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008984">
        <property type="entry name" value="SMAD_FHA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00498">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49879">
        <property type="entry name" value="SSF49879"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50006">
        <property type="entry name" value="FHA_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FHA" evidence="1">
        <location>
            <begin position="24"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20003.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="102" mass="11193" checksum="929CFD731D368932" modified="2015-11-11" version="1">MKAIFVHLTGSRRGNTEVFSIDTISIGTDAEASLHFDPEIDRSTSKYHAKIRLQECDYVLEDQGSVKGTLVNNRLVSKIILKDGDLIEFGDGGQGAFSYQVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVD7</accession>
    <name>A0A0M2UVD7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">ATP synthase subunit c</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">ATP synthase F(0) sector subunit c</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">F-type ATPase subunit c</fullName>
            <shortName evidence="13">F-ATPase subunit c</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">Lipid-binding protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">atpE</name>
        <name evidence="15" type="ORF">BROFUL_02847</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12 13">F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.</text>
    </comment>
    <comment type="function">
        <text evidence="13">Key component of the F(0) channel; it plays a direct role in translocation across the membrane. A homomeric c-ring of between 10-14 subunits forms the central stalk rotor element with the F(1) delta and epsilon subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="13">Cell membrane</location>
            <topology evidence="13">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 13">Belongs to the ATPase C chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000268">
        <property type="protein sequence ID" value="KKO18464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18464">
        <property type="protein sequence ID" value="KKO18464"/>
        <property type="gene ID" value="BROFUL_02847"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045263">
        <property type="term" value="C:proton-transporting ATP synthase complex, coupling factor F(o)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008289">
        <property type="term" value="F:lipid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01396">
        <property type="entry name" value="ATP_synth_c_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005953">
        <property type="entry name" value="ATP_synth_csu_bac/chlpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000454">
        <property type="entry name" value="ATP_synth_F0_csu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020537">
        <property type="entry name" value="ATP_synth_F0_csu_DDCD_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038662">
        <property type="entry name" value="ATP_synth_F0_csu_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002379">
        <property type="entry name" value="ATPase_proteolipid_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035921">
        <property type="entry name" value="F/V-ATP_Csub_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10031">
        <property type="entry name" value="PTHR10031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00137">
        <property type="entry name" value="ATP-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00124">
        <property type="entry name" value="ATPASEC"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81333">
        <property type="entry name" value="SSF81333"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01260">
        <property type="entry name" value="ATP_synt_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00605">
        <property type="entry name" value="ATPASE_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11 13" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="13" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 13" id="KW-0138">CF(0)</keyword>
    <keyword evidence="6 13" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="8 13" id="KW-0406">Ion transport</keyword>
    <keyword evidence="9 13" id="KW-0446">Lipid-binding</keyword>
    <keyword evidence="10 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 13" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 13" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="48"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-synt_C" evidence="14">
        <location>
            <begin position="10"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="site" description="Reversibly protonated during proton transport" evidence="13">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022547"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00025198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01396"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF00137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KKO18464.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="90" mass="9566" checksum="7906DBDDB98022CB" modified="2015-11-11" version="1">MIYFALLAIAVALIAIAAFGCGLGQGIAVYGAANSMARQPEMAGKIQLVMFVGLAFIESLTIYSLMMSFILMGKLPKTEAVLELIQHAVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVF0</accession>
    <name>A0A0M2UVF0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01488</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000152">
        <property type="protein sequence ID" value="KKO19802.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="SMR" id="A0A0M2UVF0"/>
    <dbReference type="EnsemblBacteria" id="KKO19802">
        <property type="protein sequence ID" value="KKO19802"/>
        <property type="gene ID" value="BROFUL_01488"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010980">
        <property type="entry name" value="Cyt_c/b562"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002321">
        <property type="entry name" value="Cyt_c_II"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01322">
        <property type="entry name" value="Cytochrom_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47175">
        <property type="entry name" value="SSF47175"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19802.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="176" mass="19579" checksum="730878119955CE3A" modified="2015-11-11" version="1">MKKVTLLIAGIFCSIGFAGLTNSIYPRTVSAAEEAGVSHEGVVLPTRVLMSSIARRMSNILEGTLAGNLKYVAQEAGSIVDESYKINEVFFPIDPKENKWFQRAKIDPNDSERIAKLKEGFHVYMKSITSSALEVQKAAKADNQKATFKAFTNMVEKTCFECHAEIRDKMIPVENR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVF5</accession>
    <name>A0A0M2UVF5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01475</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000151">
        <property type="protein sequence ID" value="KKO19807.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19807">
        <property type="protein sequence ID" value="KKO19807"/>
        <property type="gene ID" value="BROFUL_01475"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002763">
        <property type="entry name" value="DUF72"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036520">
        <property type="entry name" value="UPF0759_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30348">
        <property type="entry name" value="PTHR30348"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01904">
        <property type="entry name" value="DUF72"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117396">
        <property type="entry name" value="SSF117396"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19807.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="237" mass="27657" checksum="4511F65F294A003A" modified="2015-11-11" version="1">MLPFYEQKLGFKITEINSTYYTIPSPKSFEGMIKKTSPGFEFTIKAHKSMTHDIRDKDTGAFIDNKDAFDRFLYAIEPLKKENRLTAVLAQFPYSFHAVKDNYDYLLTFKERLKDIPLVVEFRNYYWHSERGLTFLKENNIGYCIVDEPKLKGLMPYNPTATTDLGYFRFHGRNANWFDASVAERYDYLYTPDDLKIFVSDIKKISGATRHTLVMFNNCHAGKSVRNAIEMLKLIEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVF8</accession>
    <name>A0A0M2UVF8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative phospholipase/carboxylesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01242</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000135">
        <property type="protein sequence ID" value="KKO20043.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20043">
        <property type="protein sequence ID" value="KKO20043"/>
        <property type="gene ID" value="BROFUL_01242"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003140">
        <property type="entry name" value="PLipase/COase/thioEstase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02230">
        <property type="entry name" value="Abhydrolase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Abhydrolase_2" evidence="1">
        <location>
            <begin position="167"/>
            <end position="277"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20043.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="422" mass="48243" checksum="86FA5F15575251CF" modified="2015-11-11" version="1">MKNGCLSGLFSFVFLITQSFCLGQDRESHGRFLVREYLKSDTEAERETILKKLNALPATFDEVKEWLKLSDEYPPQQPGLHREFAPVGERKGEYFISVPSSYTPDRSWPMIIALHGVGGNGYEMAMKWLKSTTHYNEFIIAAPTYGSGLWWKEEPEKLVLSVLDKVKRSYRIDTNRIYLTGFSSGGHGVWYFGIRYPWLFAAINPIAGECPLPSFLVNLKNVPVFIVHGLKDTVIPVEAGRDAGSRLERLHYNVLCQELPELKHQFPAEAAGKVLEWFRMNKRMPYPKEIRFSTESLKYSFAYWIEITEFSELIGQVLGVYKDISGKLIRPEGASETAKIEGVVQKKDNEIFLTTHGIKALRLYLEDGFVDMESPLRVYINGKLVSFEKVEKDIRGMLDAARKRNDREALCSAYVDIKIPLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVH7</accession>
    <name>A0A0M2UVH7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01213</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000132">
        <property type="protein sequence ID" value="KKO20063.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20063">
        <property type="protein sequence ID" value="KKO20063"/>
        <property type="gene ID" value="BROFUL_01213"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1505"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20063.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="233" mass="25842" checksum="9E67E073B3FD4163" modified="2015-11-11" version="1">MIEEYVHFYSGNLKLEGILTYDEDAQASPAILICAPHPNLGGDMDNNITASIARIAGDRGFASLRFNYRGVGKSELHTADIAQRFHYWDQSLNGGDCDYTDAVADTHAALALLISQPGITQDIFIAGYSFGAFAGMRVVAESKKAKAFAGISIPFGRYPLDFFHTCTINKLCIYSENDFSTDAEDTLKGFEGLSPPKTLELIEHSDHFYRGQEDFISKKVCIFFADQMKDHVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVI8</accession>
    <name>A0A0M2UVI8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">ATP synthase subunit b</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">ATP synthase F(0) sector subunit b</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">ATPase subunit I</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">F-type ATPase subunit b</fullName>
            <shortName evidence="11">F-ATPase subunit b</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">atpF</name>
        <name evidence="14" type="ORF">BROFUL_01697</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0).</text>
    </comment>
    <comment type="function">
        <text evidence="10 11">F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">F-type ATPases have 2 components, F(1) - the catalytic core - and F(0) - the membrane proton channel. F(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). F(0) has three main subunits: a(1), b(2) and c(10-14). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. F(1) is attached to F(0) by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta and b chains.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cell membrane</location>
            <topology evidence="11">Single-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="11 12">Belongs to the ATPase B chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000176">
        <property type="protein sequence ID" value="KKO19590.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19590">
        <property type="protein sequence ID" value="KKO19590"/>
        <property type="gene ID" value="BROFUL_01697"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045263">
        <property type="term" value="C:proton-transporting ATP synthase complex, coupling factor F(o)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01398">
        <property type="entry name" value="ATP_synth_b_bprime"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002146">
        <property type="entry name" value="ATP_synth_b/b'su_bac/chlpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005864">
        <property type="entry name" value="ATP_synth_F0_bsu_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000711">
        <property type="entry name" value="ATPase_OSCP/dsu"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00430">
        <property type="entry name" value="ATP-synt_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00213">
        <property type="entry name" value="OSCP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01144">
        <property type="entry name" value="ATP_synt_b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 11" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="11" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3 11 12" id="KW-0138">CF(0)</keyword>
    <keyword evidence="13" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5 11 12" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="7 11 12" id="KW-0406">Ion transport</keyword>
    <keyword evidence="8 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 11 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 11 12" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="13">
        <location>
            <begin position="41"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022547"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00025198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01398"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU003848"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KKO19590.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="246" mass="28214" checksum="341A3B99E895D639" modified="2015-11-11" version="1">MKFNIWTLLFQIINFVVLLFILKRILYKPIREIIEKRRGLIAKTVEDAEKTKKEAQELKEKHEEEMKKVKELQGQMLEQTRDESLKDRNKLLHEAEQDAAKIIEKEKALFDAEKRRVEAGLKNKTLEIASIFASNLLEDIADEELHKAIVRKFMKGNGGIVSDITKIKGKDETVAIELVTAYPLNMDDIKLFQETLESHIAKKVKINTTVDKTLIAGLKMKAYDMIYDSSLAGQVNALASRLKETT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVK1</accession>
    <name>A0A0M2UVK1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01163</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000126">
        <property type="protein sequence ID" value="KKO20088.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20088">
        <property type="protein sequence ID" value="KKO20088"/>
        <property type="gene ID" value="BROFUL_01163"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030288">
        <property type="term" value="C:outer membrane-bounded periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005534">
        <property type="entry name" value="Curli_assmbl/transp-comp_CsgG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03783">
        <property type="entry name" value="CsgG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="136"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20088.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="486" mass="53517" checksum="4084BA1AB83AC287" modified="2015-11-11" version="1">MKLMLDLRPPVLYLDDIRIQKRDGRNSAIVTGTITDDHGVQRLSINDTEIPITPGKEVKFQHEIVLTDGHTFSLRAVDVAGNETRGEESLDVKASLWRGGIWDGHTRHMHRTKGAPVMVAAGKLDRAGVRRLLAAGGTTTQPSPAGASHGGTENPGKGSGVASGSHETARDTIPPVIYTDLKSAIVHDTNIFFGIHAHDDNGIARLFVNQQPLDIRTAKHVFFNHLLTLNEGENTVVVKAVDREGNETELAPVKITKKAFYLLETEARYTVALLPFRTFEEDQALTETLYSLLLRAFDEEPKRFNFVERDLTKLEEILREQKIANTELTSPDAAIKVGKIRAADGMLFGAVEEDSRGISVTLRLVDTETTQVLVNVDVYDEDKNAQNLAWLMHGLSLKVKRQYPLVQGGVIRIAGNGFHVDAGATSGMLVGMKLLMFREVPVGNLALKEPLYSVARIVQVQPDTSFARISTKGIKTIKKKDLVITK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVL1</accession>
    <name>A0A0M2UVL1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4 6">30S ribosomal protein S12</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rpsL</name>
        <name evidence="8" type="ORF">BROFUL_02269</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 6">Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.</text>
    </comment>
    <comment type="function">
        <text evidence="1 4 6">With S4 and S5 plays an important role in translational accuracy.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 6">Part of the 30S ribosomal subunit. Contacts proteins S8 and S17. May interact with IF1 in the 30S initiation complex.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 4 5">Belongs to the universal ribosomal protein uS12 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000224">
        <property type="protein sequence ID" value="KKO19026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19026">
        <property type="protein sequence ID" value="KKO19026"/>
        <property type="gene ID" value="BROFUL_02269"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2831"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03368">
        <property type="entry name" value="Ribosomal_S12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00403_B">
        <property type="entry name" value="Ribosomal_S12_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006032">
        <property type="entry name" value="Ribosomal_S12/S23"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005679">
        <property type="entry name" value="Ribosomal_S12_bac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11652">
        <property type="entry name" value="PTHR11652"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00164">
        <property type="entry name" value="Ribosom_S12_S23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002133">
        <property type="entry name" value="Ribosomal_S12/S23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01034">
        <property type="entry name" value="RIBOSOMALS12"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00981">
        <property type="entry name" value="rpsL_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00055">
        <property type="entry name" value="RIBOSOMAL_S12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 5 8" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4 6" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="4 6" id="KW-0820">tRNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003022"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00015690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00403"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003622"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003623"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="123" mass="13837" checksum="CE8B61C292A45BC8" modified="2015-11-11" version="1">MPTINQLIRKGRKKTQNRSKSPDLQKCSHKKGVCLQVMTRTPKKPNSALRKVARVRLSNGREITAYIPGEGHNLQEHSIVLVRGGRVRDLPGVKYHIIRGTLDCAGVDGRRRSRSKYGTKTPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVL6</accession>
    <name>A0A0M2UVL6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02254</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000223">
        <property type="protein sequence ID" value="KKO19031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19031">
        <property type="protein sequence ID" value="KKO19031"/>
        <property type="gene ID" value="BROFUL_02254"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019270">
        <property type="entry name" value="DUF2283"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10049">
        <property type="entry name" value="DUF2283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="76" mass="8686" checksum="137773093AC21C96" modified="2015-11-11" version="1">MRIEYDKEADALYIQLKETRVFDNIDIEDGVTIDIDEKGHIIGVEILDATKKLSRKDLSNIIIENLPIEKVETATI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVN2</accession>
    <name>A0A0M2UVN2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02737</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000254">
        <property type="protein sequence ID" value="KKO18569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18569">
        <property type="protein sequence ID" value="KKO18569"/>
        <property type="gene ID" value="BROFUL_02737"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="36" mass="4361" checksum="26DC9689D6DD6568" modified="2015-11-11" version="1">MRETNKSFDEIKTKPGIISQQLWIRYIAYAETMELR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVP1</accession>
    <name>A0A0M2UVP1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7">Glutamate racemase</fullName>
            <ecNumber evidence="2 7">5.1.1.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">murI</name>
        <name evidence="8" type="ORF">BROFUL_01188</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Provides the (R)-glutamate required for cell wall biosynthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>L-glutamate = D-glutamate</text>
            <dbReference type="Rhea" id="RHEA:12813"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:29986"/>
            <dbReference type="EC" id="5.1.1.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the aspartate/glutamate racemases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.1.1.3" evidence="2 7"/>
    <dbReference type="EMBL" id="LAQJ01000126">
        <property type="protein sequence ID" value="KKO20113.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20113">
        <property type="protein sequence ID" value="KKO20113"/>
        <property type="gene ID" value="BROFUL_01188"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1467"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008881">
        <property type="term" value="F:glutamate racemase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00258">
        <property type="entry name" value="Glu_racemase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015942">
        <property type="entry name" value="Asp/Glu/hydantoin_racemase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001920">
        <property type="entry name" value="Asp/Glu_race"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018187">
        <property type="entry name" value="Asp/Glu_racemase_AS_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004391">
        <property type="entry name" value="Glu_race"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01177">
        <property type="entry name" value="Asp_Glu_race"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53681">
        <property type="entry name" value="SSF53681"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00067">
        <property type="entry name" value="glut_race"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00923">
        <property type="entry name" value="ASP_GLU_RACEMASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-0133">Cell shape</keyword>
    <keyword evidence="6 7" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="5 7" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4 7" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="14"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="46"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="78"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="188"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="7">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="7">
        <location>
            <position position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001602"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00258"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20113.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="276" mass="30078" checksum="3AFFB2FFBAF310DB" modified="2015-11-11" version="1">MKNPGTPSPIGVFDSGIGGISVLAELIKALPWEKFVYFADTLHSPYGTKPEEAVRSLSLKVTEFLAGMGIKSLVVACNTATSAAINEIRRMCPFPVIGMEPAIKPAVELGSAGKILVMATPLTLKSRKFNELVHHYQHRAEIVPVPCVGLVEIIERNPSCSQEVEAYLSHLFSSVSAEDISAIVLGCTHYVLIKKEIAHVVGDKITIIDGNSGTARRLRTVLQNARLLNTVNAEKSPIPVMAQVTFYISGIEREERLAQCKQLLRKEGIFCEEPVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVW2</accession>
    <name>A0A0M2UVW2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Type IV fimbrial assembly protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01256</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GSP E family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO19987.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19987">
        <property type="protein sequence ID" value="KKO19987"/>
        <property type="gene ID" value="BROFUL_01256"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1553"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001482">
        <property type="entry name" value="T2SS/T4SS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037257">
        <property type="entry name" value="T2SS_E_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007831">
        <property type="entry name" value="T2SS_GspE_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00437">
        <property type="entry name" value="T2SSE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05157">
        <property type="entry name" value="T2SSE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160246">
        <property type="entry name" value="SSF160246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="2">
        <location>
            <begin position="321"/>
            <end position="444"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19987.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="572" mass="64112" checksum="A5DFDFD944421937" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW52</accession>
    <name>A0A0M2UW52_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02074</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000209">
        <property type="protein sequence ID" value="KKO19196.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19196">
        <property type="protein sequence ID" value="KKO19196"/>
        <property type="gene ID" value="BROFUL_02074"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19196.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="21" mass="2478" checksum="EE794B0563DAC060" modified="2015-11-11" version="1" fragment="single">MDMHIVENKSKSGKKIYRSIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW89</accession>
    <name>A0A0M2UW89_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">Molybdenum cofactor biosynthesis protein B</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02549</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">May be involved in the biosynthesis of molybdopterin.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 5">Cofactor biosynthesis; molybdopterin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the MoaB/Mog family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18769">
        <property type="protein sequence ID" value="KKO18769"/>
        <property type="gene ID" value="BROFUL_02549"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3164"/>
    <dbReference type="UniPathway" id="UPA00344"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00886">
        <property type="entry name" value="MogA_MoaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.980.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012245">
        <property type="entry name" value="MoaB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036425">
        <property type="entry name" value="MoaB/Mog-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001453">
        <property type="entry name" value="MoaB/Mog_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008284">
        <property type="entry name" value="MoCF_biosynth_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00994">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006443">
        <property type="entry name" value="MoaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00852">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53218">
        <property type="entry name" value="SSF53218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00177">
        <property type="entry name" value="molyb_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01078">
        <property type="entry name" value="MOCF_BIOSYNTHESIS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MoCF_biosynth" evidence="6">
        <location>
            <begin position="5"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00015262"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR006443"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="166" mass="17855" checksum="A58BB7674FB96F3F" modified="2015-11-11" version="1">MIRAAILTLSDKGSRGEREDKSGEVIRNMLAGIDATITTYEVIPDEKDLITKKLLEFADRADLIVTTGGTGVGPRDVTPEATRAVIEKELPGFSEAMRMEGLKHTPRAMGSRAIAGIYRQTLIINLPGSPKGVAENLAVVLPVIPHTIGLIKGQVSDCAKDREKHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWH0</accession>
    <name>A0A0M2UWH0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">LAB_N domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01354</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000140">
        <property type="protein sequence ID" value="KKO19925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19925">
        <property type="protein sequence ID" value="KKO19925"/>
        <property type="gene ID" value="BROFUL_01354"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1674"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008915">
        <property type="term" value="F:lipid-A-disaccharide synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009245">
        <property type="term" value="P:lipid A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011499">
        <property type="entry name" value="Lipid_A_biosynth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014546">
        <property type="entry name" value="UCP028440_lipidA_biosyn"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07578">
        <property type="entry name" value="LAB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF028440">
        <property type="entry name" value="UCP_LAB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01259">
        <property type="entry name" value="LAB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="69"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="domain" description="LAB_N" evidence="2">
        <location>
            <begin position="15"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM01259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="110" mass="12601" checksum="10729388635E11BB" modified="2015-11-11" version="1">MMANLAMHINAWVILGFLGQFLFGSRFFVQWIVSERRGESIIPEVFWYLSMAGSAILLTYAIYRRDPVFIMGQCSGLFIYVRNVMLIYKKKKIVSASADEGFGLPETFSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWI3</accession>
    <name>A0A0M2UWI3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00848</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000105">
        <property type="protein sequence ID" value="KKO20423.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20423">
        <property type="protein sequence ID" value="KKO20423"/>
        <property type="gene ID" value="BROFUL_00848"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1069"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004155">
        <property type="entry name" value="PBS_lyase_HEAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017946">
        <property type="entry name" value="PLC-like_Pdiesterase_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03130">
        <property type="entry name" value="HEAT_PBS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00567">
        <property type="entry name" value="EZ_HEAT"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="SSF48371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51695">
        <property type="entry name" value="SSF51695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="140"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="146"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20423.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="494" mass="54369" checksum="ED174EF490B27394" modified="2015-11-11" version="1">MRSREFQKERVPLLSDALKFCKLNDLKLILNVRQTCLEEQVLQVVGECEMSSQVYFWGTMRNVTMTGEESEGKELIFLPAEETTKEKIDLIHEEKNYAFSIILGNDSRTVIKNRIKAGVDVIMVDYPCVATDILNITNQTSAQKRPKGRETNRSRQDADNHAPHLQEQVKGLIKTIEGADYDKARAAAMALMVLPPGCTVPHLVTLLSDSSPQVRQHAVWSLGFCGDDSVYANIEPLLKDINTAVRREAVLALKRLNAAQSVPALHEVLLKEPDLNVEYDIVRTLGALGDRGSVFPIMKVFAKEQSWHVKSGCVEALGKIGSDSAMNALAKILVTDAGEDAAWARTKAAWGLAAIGQRAVPLLISALNDKEEGTRRRAGWALVKIGHPAVKALISSLHEIHKETRERTALTLGWIGDESAVTALIWALKDKEPPVVSSAAWALGRIGSPNALAALQGLVKNKNTDVRENAVEAVERIMAKKDELAYQQGRSQRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWM0</accession>
    <name>A0A0M2UWM0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">dTTP/UTP pyrophosphatase</fullName>
            <shortName evidence="2">dTTPase/UTPase</shortName>
            <ecNumber evidence="2">3.6.1.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Nucleoside triphosphate pyrophosphatase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="2">Nucleotide pyrophosphatase</fullName>
            <shortName evidence="2">Nucleotide PPase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01893</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>H2O + UTP = diphosphate + H(+) + UMP</text>
            <dbReference type="Rhea" id="RHEA:29395"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
            <dbReference type="EC" id="3.6.1.9"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>dTTP + H2O = diphosphate + dTMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:28534"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37568"/>
            <dbReference type="ChEBI" id="CHEBI:63528"/>
            <dbReference type="EC" id="3.6.1.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the Maf family. YhdE subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.9" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19366">
        <property type="protein sequence ID" value="KKO19366"/>
        <property type="gene ID" value="BROFUL_01893"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2362"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036218">
        <property type="term" value="F:dTTP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035529">
        <property type="term" value="F:NADH pyrophosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036221">
        <property type="term" value="F:UTP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009117">
        <property type="term" value="P:nucleotide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00555">
        <property type="entry name" value="Maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00528">
        <property type="entry name" value="Maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029001">
        <property type="entry name" value="ITPase-like_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003697">
        <property type="entry name" value="Maf-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43213">
        <property type="entry name" value="PTHR43213"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02545">
        <property type="entry name" value="Maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006305">
        <property type="entry name" value="Maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52972">
        <property type="entry name" value="SSF52972"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00172">
        <property type="entry name" value="maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0546">Nucleotide metabolism</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <feature type="site" description="Important for substrate specificity" evidence="2">
        <location>
            <position position="34"/>
        </location>
    </feature>
    <feature type="site" description="Important for substrate specificity" evidence="2">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <feature type="site" description="Important for substrate specificity" evidence="2">
        <location>
            <position position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="218" mass="24344" checksum="EF59AE6AEC0AE76E" modified="2015-11-11" version="1">MVYPSTIGSIVEGFFCHMEVITKKRLILASTSPRRIALLKLLGYRFDIIPHSIDEYIPDDATPEEVVLNLAFMKAHDVAGRVEDAIIIGADTLVYHKKGIIGKPKDIRDAKKILSLLSNSAHSIFTGVCIIDKPSQKKLLRNERTQITMKHIPEEELEAYVQSGEPMDKAGAYAIQGEGEKFIKQITGSYSNAVGLPLGLVQEMLNKFNYHNEDAEKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWU7</accession>
    <name>A0A0M2UWU7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Exodeoxyribonuclease III</fullName>
            <ecNumber evidence="3">3.1.11.2</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">xthA</name>
        <name evidence="3" type="ORF">BROFUL_02367</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the DNA repair enzymes AP/ExoA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.11.2" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18974.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18974">
        <property type="protein sequence ID" value="KKO18974"/>
        <property type="gene ID" value="BROFUL_02367"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2941"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008853">
        <property type="term" value="F:exodeoxyribonuclease III activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09086">
        <property type="entry name" value="ExoIII-like_AP-endo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004808">
        <property type="entry name" value="AP_endonuc_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020847">
        <property type="entry name" value="AP_endonuclease_F1_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037493">
        <property type="entry name" value="ExoIII-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43250">
        <property type="entry name" value="PTHR43250"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="SSF56219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00633">
        <property type="entry name" value="xth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00726">
        <property type="entry name" value="AP_NUCLEASE_F1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51435">
        <property type="entry name" value="AP_NUCLEASE_F1_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endo/exonuclease/phosphatase" evidence="2">
        <location>
            <begin position="4"/>
            <end position="247"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007092"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18974.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="256" mass="29792" checksum="264A9EA5DF3013ED" modified="2015-11-11" version="1">MKIASFNVNSIRARLPIVIGWIQNESPDVLCLQETKVTDAEFPRGVFEDMKYHTVFRGEKSYNGVAILSKIFPKNIRAGFDEFESEGTRLIAATVQNISVINTYVPQGAHPLLKQFRYKLDWLQRLHEYFDKNYQPDQDVLWLGDFNVAPEPADVYDPEHLLGSIGYHPDEHAAILRLKKWGFVDVFRLHQHGSEQYTFWDYRVKDAIARKRGWRVDHIWATRPLAQKSTKAWIDVAPRLLERPSDHTLIVAEFEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWW8</accession>
    <name>A0A0M2UWW8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00934</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000114">
        <property type="protein sequence ID" value="KKO20342.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20342">
        <property type="protein sequence ID" value="KKO20342"/>
        <property type="gene ID" value="BROFUL_00934"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1177"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016052">
        <property type="term" value="P:carbohydrate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010502">
        <property type="entry name" value="Carb-bd_dom_fam9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014755">
        <property type="entry name" value="Cu-Rt/internalin_Ig-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006558">
        <property type="entry name" value="LamG-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032812">
        <property type="entry name" value="SbsA_Ig"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13205">
        <property type="entry name" value="Big_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06452">
        <property type="entry name" value="CBM9_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00560">
        <property type="entry name" value="LamGL"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="SSF49899"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644138" evidence="2">
        <location>
            <begin position="27"/>
            <end position="970"/>
        </location>
    </feature>
    <feature type="domain" description="LamGL" evidence="3">
        <location>
            <begin position="92"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="domain" description="LamGL" evidence="3">
        <location>
            <begin position="589"/>
            <end position="739"/>
        </location>
    </feature>
    <feature type="domain" description="LamGL" evidence="3">
        <location>
            <begin position="810"/>
            <end position="961"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20342.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="970" mass="104947" checksum="981F6A47AB871840" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWX1</accession>
    <name>A0A0M2UWX1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Acyl-(Acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_00681</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20563">
        <property type="protein sequence ID" value="KKO20563"/>
        <property type="gene ID" value="BROFUL_00681"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.868"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008780">
        <property type="term" value="F:acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009245">
        <property type="term" value="P:lipid A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03351">
        <property type="entry name" value="LbH_UDP-GlcNAc_AT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029098">
        <property type="entry name" value="Acetyltransf_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037157">
        <property type="entry name" value="Acetyltransf_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010137">
        <property type="entry name" value="Lipid_A_LpxA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43480">
        <property type="entry name" value="PTHR43480"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13720">
        <property type="entry name" value="Acetyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00132">
        <property type="entry name" value="Hexapep"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000456">
        <property type="entry name" value="UDP-GlcNAc_acltr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01852">
        <property type="entry name" value="lipid_A_lpxA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 7" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="2" id="KW-0441">Lipid A biosynthesis</keyword>
    <keyword evidence="1" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="4" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Acetyltransf_11" evidence="6">
        <location>
            <begin position="175"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF13720"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="272" mass="29747" checksum="2C3077FECF722753" modified="2015-11-11" version="1">MKIHRSAIVHPDALLGKEVEIGPFSIIGKAVTLGDGTIIKNNVTVTGNTIIGKNNIIHPNAVLGAEPQDLKYRGEQTSLIMGDNNVVREGVTINKGTAGGGEKTVIGDNNFFMACSHIAHDCIIEDHVLLANGVLLGGHVVVERCAKLMGLVGIQPFATIGRHAYVGGHTRIVQDVPPYMIIEGHPAKIRQVNVIGLEREGFSKTQISEIKEAFRKIFRSSELNKNHLLETLEKNEDVSPEVKYLVAFLRNSDKGKFGRYRESFRHPTATTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX11</accession>
    <name>A0A0M2UX11_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01776</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000185">
        <property type="protein sequence ID" value="KKO19516.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19516">
        <property type="protein sequence ID" value="KKO19516"/>
        <property type="gene ID" value="BROFUL_01776"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19516.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="401" mass="45774" checksum="94931871DA140DE3" modified="2015-11-11" version="1">MIRTGINNNSAINTDLFTKNGNIRFDQYPSKPIIQDAEWFGMPIDPWLRHIIAIHFNPDVGSPYWLRKEKELGIDARRDISSMEDLPILGPMEEEDLRRYPLEYFIPKIYLENKASFILGETAGTTGLPKTTAYLREEFSVTFVEWFRYIAEYRGFPHDAQWLWVGPGGPHIIGKAVGPVAQSMGSMDPFSIDMDPRWVKKLKPDSLGYKRYISHILEQAMDIVNRQHIEVIYSTPPLLLKLAEMMQRRQRMQIRGIHYGGVAIEQEQLKRFRGELFPNAVHIAGYGNTLFGLCMEIEESASGDLDYYPPGPRMAVQVVSTEDGIQPDKNRLTQLVKYGEIGQVVCHRLDASFFIPNMFERDEAVRIAATEKVQSLGIYQDGVRNPSLLKGLETNAKVGVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX42</accession>
    <name>A0A0M2UX42_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00827</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000104">
        <property type="protein sequence ID" value="KKO20442.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20442">
        <property type="protein sequence ID" value="KKO20442"/>
        <property type="gene ID" value="BROFUL_00827"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20442.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="72" mass="8441" checksum="816B9F739775C2B6" modified="2015-11-11" version="1">MSSMSGIKFWKRPYCHGDRRKPRFSVGWAVLSKKEDLWKDWEKYGLQICLSVLTVTKKCAFSHRLHYCSDGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX65</accession>
    <name>A0A0M2UX65_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cobyric acid synthase CobQ</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00641</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20658">
        <property type="protein sequence ID" value="KKO20658"/>
        <property type="gene ID" value="BROFUL_00641"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.810"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011698">
        <property type="entry name" value="GATase_3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07685">
        <property type="entry name" value="GATase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GATase_3" evidence="1">
        <location>
            <begin position="41"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="138" mass="15811" checksum="FBAB13C36C5DA50F" modified="2015-11-11" version="1">MNSIDDIIKMKAFSGRTQGLSNIEMLNKVRKYMGETIFDGHNSVRPFARITERAGKRVDIPDGCVSDDGNVMGTYIHGIFDNDEFRSKLMNYLRSKKGLEPSHEFQPGFKSIKERRYDGLASIVRENMDVNIVYDILK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXI7</accession>
    <name>A0A0M2UXI7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01608</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19676">
        <property type="protein sequence ID" value="KKO19676"/>
        <property type="gene ID" value="BROFUL_01608"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1987"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="208" mass="23744" checksum="BF0408F64C0350A8" modified="2015-11-11" version="1">MPLLDRHSEAEPKLLEKRLATQPGFFCEVIRLVYRSKNEPKTDGEPDKQKETIAVNAWRLLREWKRSPGLQGDGTFSTQDFETWLKSVKKYCAESGHLEVAMLTVGKVLLYCPADPQGLWIVQAVARALNARDAEEIRRGFVNEVFNSRGVHDVDPTGKPEKELAIHWREKADAVENAGFARFAATLRKRAESYDREAEQIIKEHRQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXQ2</accession>
    <name>A0A0M2UXQ2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">Ornithine carbamoyltransferase</fullName>
            <shortName evidence="5">OTCase</shortName>
            <ecNumber evidence="3 5">2.1.3.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_00663</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>carbamoyl phosphate + L-ornithine = H(+) + L-citrulline + phosphate</text>
            <dbReference type="Rhea" id="RHEA:19513"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:46911"/>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
            <dbReference type="EC" id="2.1.3.3"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.3.3" evidence="3 5"/>
    <dbReference type="EMBL" id="LAQJ01000087">
        <property type="protein sequence ID" value="KKO20627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20627">
        <property type="protein sequence ID" value="KKO20627"/>
        <property type="gene ID" value="BROFUL_00663"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.842"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016597">
        <property type="term" value="F:amino acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004585">
        <property type="term" value="F:ornithine carbamoyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1370">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01109">
        <property type="entry name" value="OTCase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006132">
        <property type="entry name" value="Asp/Orn_carbamoyltranf_P-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006130">
        <property type="entry name" value="Asp/Orn_carbamoylTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036901">
        <property type="entry name" value="Asp/Orn_carbamoylTrfase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006131">
        <property type="entry name" value="Asp_carbamoyltransf_Asp/Orn-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002292">
        <property type="entry name" value="Orn/put_carbamltrans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024904">
        <property type="entry name" value="OTCase_ArgI"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00185">
        <property type="entry name" value="OTCace"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02729">
        <property type="entry name" value="OTCace_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00100">
        <property type="entry name" value="AOTCASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00102">
        <property type="entry name" value="OTCASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53671">
        <property type="entry name" value="SSF53671"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00658">
        <property type="entry name" value="orni_carb_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="OTCace_N" evidence="8">
        <location>
            <begin position="10"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="domain" description="OTCace" evidence="7">
        <location>
            <begin position="157"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="region of interest" description="Carbamoyl phosphate binding" evidence="5">
        <location>
            <begin position="137"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="region of interest" description="Ornithine binding" evidence="5">
        <location>
            <begin position="235"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="region of interest" description="Carbamoyl phosphate binding" evidence="5">
        <location>
            <begin position="271"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="86"/>
        </location>
        <ligand>
            <name>carbamoyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="110"/>
        </location>
        <ligand>
            <name>carbamoyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="168"/>
        </location>
        <ligand>
            <name>L-ornithine</name>
            <dbReference type="ChEBI" id="CHEBI:46911"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="231"/>
        </location>
        <ligand>
            <name>L-ornithine</name>
            <dbReference type="ChEBI" id="CHEBI:46911"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="299"/>
        </location>
        <ligand>
            <name>carbamoyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007805"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="313" mass="35351" checksum="70C50D7D45A4415E" modified="2015-11-11" version="1">MYERMPMKCKDLISIADLLPSDIEEIFTVTRELKEWHAKGYDEKCLNGKILGMIFEKSSMRTRVSFEVAMVQLGGHAIYLTQGDINLGKREAVKDGARVLSRYVDGIVIRTFGQETIQELARYATVPVINALSDYLHPCQALTDMYTIKEKFGTYTNVKIAYIGDGNNVARSLAQICAKLGIHFYVASPKGYELSSEFLAKAKQMAEGYDVIHLSHDPKEVAKNAQVLYTDTWVSMGQEAEKAVRQQAFRDFQINNDIVKLAKNDVKVMHCLPAHRGEEITDDVLDGPNSIVYDQAENRLHVEKALLKLLLRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXT7</accession>
    <name>A0A0M2UXT7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PINc domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00361</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000045">
        <property type="protein sequence ID" value="KKO20908.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20908">
        <property type="protein sequence ID" value="KKO20908"/>
        <property type="gene ID" value="BROFUL_00361"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002716">
        <property type="entry name" value="PIN_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01850">
        <property type="entry name" value="PIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PINc" evidence="1">
        <location>
            <begin position="6"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20908.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="135" mass="14917" checksum="ABEC12C22147DFAB" modified="2015-11-11" version="1">MYPPSLLDTDILSELFKGNSSVKARASEYLREHSRCTISHITQYEILKGLKAKKAQKQIDAFLLFCKANIVLPITDAVILTAADLYATLRGQGTIISDADIIVASIAITNNLVLVTNNINHFSRISSLLPDNWKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXY6</accession>
    <name>A0A0M2UXY6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00553</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000077">
        <property type="protein sequence ID" value="KKO20717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20717">
        <property type="protein sequence ID" value="KKO20717"/>
        <property type="gene ID" value="BROFUL_00553"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015035">
        <property type="term" value="F:protein-disulfide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007263">
        <property type="entry name" value="DCC1-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04134">
        <property type="entry name" value="DCC1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="127" mass="15179" checksum="073B5F6ED7895334" modified="2015-11-11" version="1">MRKPEPVVIIYDDKCSLCRGCRRWIELHAIQRNVFEFIPCRSEERRRRFPELNDDVCVQSFQLVLPQKQILAGDTALPEILIRLRGYRWLQILFQLPVSKACLYAAYRWISNNRYLISKTIKPLIQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY16</accession>
    <name>A0A0M2UY16_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_00529</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000073">
        <property type="protein sequence ID" value="KKO20747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20747">
        <property type="protein sequence ID" value="KKO20747"/>
        <property type="gene ID" value="BROFUL_00529"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016187">
        <property type="entry name" value="CTDL_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025874">
        <property type="entry name" value="DZR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005532">
        <property type="entry name" value="SUMF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042095">
        <property type="entry name" value="SUMF_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12773">
        <property type="entry name" value="DZR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03781">
        <property type="entry name" value="FGE-sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56436">
        <property type="entry name" value="SSF56436"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="4" id="KW-0802">TPR repeat</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644081" evidence="5">
        <location>
            <begin position="26"/>
            <end position="457"/>
        </location>
    </feature>
    <feature type="domain" description="DZANK-type" evidence="7">
        <location>
            <begin position="37"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="4">
        <location>
            <begin position="110"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="4">
        <location>
            <begin position="144"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="domain" description="FGE-sulfatase" evidence="6">
        <location>
            <begin position="224"/>
            <end position="452"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF03781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF12773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="457" mass="51939" checksum="95BC5A627496A256" modified="2015-11-11" version="1">MKIRYVTSLLSISIVYCILISTLHADAPKPNAMTNRCPTCNKTYPEGTKFCGDDGAKLSEIAAKMICPECKKEGIAGEKFCKEHGKKLIPFTETPPAKDVDTLNQKKELAKKYYKEGSDFCDAESYDSAIASYKKAEEAFPDFPALHYNMGWLYSKLGNVEQAIHHLQKYIVLAPDASDITEVQSYIVVLKNAAEKRKQAVDTFKNRDDTMKKALMEQKGKYGSVLVPAGEFVMGTNEAREDTYPEHRVYLDAFEIDRYEVTNAQYWEFLEYMKKTNDHSKCFKGEPSGKNHTPRFWENEYYNNPDFPVARIDWYDAYAYAAWAGKRLPTEAEWEKAARGLDGRKFPWGNEWDPARCNLSGDPKPVGSNEGGKSVYGCYDMAGSVHEWCADWYLDTYYAEAPSKNPKGPEDGLRRVIRGGSRFSQPFQVRTNTRKSEQPDLFNVALGFRCAKDVKAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY68</accession>
    <name>A0A0M2UY68_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF1858 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01881</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000194">
        <property type="protein sequence ID" value="KKO19419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19419">
        <property type="protein sequence ID" value="KKO19419"/>
        <property type="gene ID" value="BROFUL_01881"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3910.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023883">
        <property type="entry name" value="CHP03980_redox-disulphide"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015077">
        <property type="entry name" value="DUF1858"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038062">
        <property type="entry name" value="ScdA-like_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08984">
        <property type="entry name" value="DUF1858"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140683">
        <property type="entry name" value="SSF140683"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03980">
        <property type="entry name" value="prismane_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1858" evidence="1">
        <location>
            <begin position="8"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="76" mass="8400" checksum="6759E081BF120087" modified="2015-11-11" version="1">MTEALKKITKKTSIGEVIKQYPETEPVVKKYFGAGCFTCPGSKTEDIAFGAAMHNVDPEVIIKELNDVIEKNKTKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYF8</accession>
    <name>A0A0M2UYF8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00668</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000088">
        <property type="protein sequence ID" value="KKO20605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20605">
        <property type="protein sequence ID" value="KKO20605"/>
        <property type="gene ID" value="BROFUL_00668"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="SSF50978"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644090" evidence="1">
        <location>
            <begin position="27"/>
            <end position="325"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="325" mass="37194" checksum="7D9A2BB00C0C82D0" modified="2015-11-11" version="1">MKAFLPFFLSLLVFICQLFPVHNAIANEWDIGEHMEEFDACDSVILHFDGKTWNHLFHGFGMWLNDIYGFASNDIFAVGEQGVILHYDGHSWTKQKSPVTQRLNRIWGNSRKDIYVCGDFGVMLHFNGMEWKKFDTTMVDWCRAIWGIDEKHIFVAGNLGKIFRYDGEKWLERMIGTMDSMFDISGTSMKNIYAVGEYGTVVYYDGKNLKKLKPFTNKTLTSVWTVGSDNVYVAGADGLIFHYDGSKWARQMSGTTNWLRRIRGIDAQNIFAVGDHATILYSDGKTWKTHKSGTNYSFSGIWGNRRDDVYVVGVNPAGLYDHTTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYI6</accession>
    <name>A0A0M2UYI6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00144</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000016">
        <property type="protein sequence ID" value="KKO21143.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21143">
        <property type="protein sequence ID" value="KKO21143"/>
        <property type="gene ID" value="BROFUL_00144"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21143.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="67" mass="7958" checksum="9811BD9C03BC4E47" modified="2015-11-11" version="1">MNLTEAIDMVAKDERDLQLKYTKVADEETDPFVKAFLHRIVKDAIKHEKKIYKKYEKVLATLNKKTY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYL0</accession>
    <name>A0A0M2UYL0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Penicillin-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00603</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000083">
        <property type="protein sequence ID" value="KKO20675.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20675">
        <property type="protein sequence ID" value="KKO20675"/>
        <property type="gene ID" value="BROFUL_00603"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.760"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008658">
        <property type="term" value="F:penicillin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009002">
        <property type="term" value="F:serine-type D-Ala-D-Ala carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005311">
        <property type="entry name" value="PBP_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036138">
        <property type="entry name" value="PBP_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001460">
        <property type="entry name" value="PCN-bd_Tpept"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017790">
        <property type="entry name" value="Penicillin-binding_protein_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03717">
        <property type="entry name" value="PBP_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00905">
        <property type="entry name" value="Transpeptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56519">
        <property type="entry name" value="SSF56519"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03423">
        <property type="entry name" value="pbp2_mrdA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PBP_dimer" evidence="4">
        <location>
            <begin position="50"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="domain" description="Transpeptidase" evidence="3">
        <location>
            <begin position="325"/>
            <end position="631"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="134"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20675.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="642" mass="72046" checksum="33FF6F868C51B285" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYP8</accession>
    <name>A0A0M2UYP8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Asparagine synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_00327</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the asparagine synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000040">
        <property type="protein sequence ID" value="KKO20947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20947">
        <property type="protein sequence ID" value="KKO20947"/>
        <property type="gene ID" value="BROFUL_00327"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.402"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004066">
        <property type="term" value="F:asparagine synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006529">
        <property type="term" value="P:asparagine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01991">
        <property type="entry name" value="Asn_Synthase_B_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00712">
        <property type="entry name" value="AsnB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006426">
        <property type="entry name" value="Asn_synth_AEB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001962">
        <property type="entry name" value="Asn_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033738">
        <property type="entry name" value="AsnB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017932">
        <property type="entry name" value="GATase_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00733">
        <property type="entry name" value="Asn_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001589">
        <property type="entry name" value="Asn_synthetase_glu-h"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01536">
        <property type="entry name" value="asn_synth_AEB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51278">
        <property type="entry name" value="GATASE_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="5" id="KW-0061">Asparagine biosynthesis</keyword>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 5" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glutamine amidotransferase type-2" evidence="8">
        <location>
            <begin position="2"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="active site" description="For GATase activity" evidence="5">
        <location>
            <position position="2"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="100"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="287"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="362"/>
            <end position="363"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="site" description="Important for beta-aspartyl-AMP intermediate formation" evidence="7">
        <location>
            <position position="364"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR001589-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR001589-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR001589-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="623" mass="72011" checksum="DEC431E15A1795E5" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYQ0</accession>
    <name>A0A0M2UYQ0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00556</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000077">
        <property type="protein sequence ID" value="KKO20720.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20720">
        <property type="protein sequence ID" value="KKO20720"/>
        <property type="gene ID" value="BROFUL_00556"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20720.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="51" mass="6149" checksum="FDA81AE5346D0F99" modified="2015-11-11" version="1">MQIYRVRVLFVLSWDGWITCRTVISWLEILRPFHSIRMTPFVILSEAKNLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYZ8</accession>
    <name>A0A0M2UYZ8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Nucleotide sugar dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00238</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000029">
        <property type="protein sequence ID" value="KKO21037.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21037">
        <property type="protein sequence ID" value="KKO21037"/>
        <property type="gene ID" value="BROFUL_00238"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.292"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016628">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000271">
        <property type="term" value="P:polysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017476">
        <property type="entry name" value="UDP-Glc/GDP-Man"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014026">
        <property type="entry name" value="UDP-Glc/GDP-Man_DH_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001732">
        <property type="entry name" value="UDP-Glc/GDP-Man_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028359">
        <property type="entry name" value="UDP_ManNAc/GlcNAc_DH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00984">
        <property type="entry name" value="UDPG_MGDP_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03721">
        <property type="entry name" value="UDPG_MGDP_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF500136">
        <property type="entry name" value="UDP_ManNAc_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000124">
        <property type="entry name" value="UDPglc_GDPman_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03026">
        <property type="entry name" value="NDP-sugDHase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UDPG_MGDP_dh_N" evidence="3">
        <location>
            <begin position="41"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="domain" description="UDPG_MGDP_dh" evidence="2">
        <location>
            <begin position="238"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR000124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03721"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO21037.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="377" mass="41852" checksum="F9BC796DE4C680EF" modified="2015-11-11" version="1">MQSDDQLINIWCIFYLNQGKRRFAGACVGDLLEKIKSKKAKIGVVGLGYVGLPLALEFVRNGYCVTGIDKSKERVESLNKGRSYVIDVKSEDITQFIEKGLLCVTHDVSALSALDAVSICVPTPLTKTKDPDMSYIIGVGQEVKNHMHKGQLFILESTTYPGTTEELVLPLLEEGGFTVGKDVFLAFSPERIDPGNKKYSVKNIPKVIGGVTPRCTELASCLYGHIIETIIPVSSPRVAEMVKLLENTFRNVNIALVNEIAIMSERLNIDVWEVIDAAKTKPFGFMSFYPGPGLGGHCIPIDPLYLSWVAKKNGFELRFIALADQVNSAMPEFVVEKITDALNDAEKRQSRDLISISWVLHTKRTWMICANRQPLKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ26</accession>
    <name>A0A0M2UZ26_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Hydrazine synthase subunit C</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">hzsC</name>
        <name evidence="1" type="ORF">BROFUL_00382</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000049">
        <property type="protein sequence ID" value="KKO20885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20885">
        <property type="protein sequence ID" value="KKO20885"/>
        <property type="gene ID" value="BROFUL_00382"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019405">
        <property type="entry name" value="Lactonase_7-beta_prop"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011045">
        <property type="entry name" value="N2O_reductase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011964">
        <property type="entry name" value="YVTN_b-propeller_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10282">
        <property type="entry name" value="Lactonase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50974">
        <property type="entry name" value="SSF50974"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02276">
        <property type="entry name" value="beta_rpt_yvtn"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="376" mass="40630" checksum="CD68D432FD55E3C2" modified="2015-11-11" version="1">MKGRGWIGAAVVGAVLSVVGVSSAGFIQGTHVKTDLPGPFHITTSPDGGTLYICNQSGHSVTFVDARTQKVTGEVAVGVQPEAAATTPDNAFLYVCNAESDSVSVIDVARKQVVKEIKVGDWPSGIKISRDGKTAYVACSGNMWNTVDVIDTGRMEKTRAIYTSDYGPRTLDISPDGKTLAVINDTVGSISRSVNFIDVDTSRVLEKRVIRESSNLRDVVYTPDGQYVVVTYETPKNWLPVCEAENGQVFTNNIAVLETKPGGKVARLPLDELNNYDGNPYGLAMDPKGRYLYIGVRGMHRVTILDMAKVLNAVRGNSQAELDYLRDDLGFVRDYLVARVPTGLGPSSVCLSPDGKYCYAANYFSNNVSVIRTPVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ89</accession>
    <name>A0A0M2UZ89_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00168</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000017">
        <property type="protein sequence ID" value="KKO21122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21122">
        <property type="protein sequence ID" value="KKO21122"/>
        <property type="gene ID" value="BROFUL_00168"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="64" mass="7354" checksum="096FBDB1834DAD80" modified="2015-11-11" version="1">MKLRRFSKTIKINESSTRVNLSLEIFMGNAKLSGSLLFSVCCQVTLFQDNHKISYICAVYKTYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZL6</accession>
    <name>A0A0M2UZL6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00221</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000027">
        <property type="protein sequence ID" value="KKO21050.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21050">
        <property type="protein sequence ID" value="KKO21050"/>
        <property type="gene ID" value="BROFUL_00221"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="14"/>
            <end position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21050.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="50" mass="5903" checksum="A37C00FE3D439CDC" modified="2015-11-11" version="1">MENVWAIITKPDNIPIVGLIILLLFFTWITFKQAFENDKRIKREKQQKGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZU7</accession>
    <name>A0A0M2UZU7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00789</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000100">
        <property type="protein sequence ID" value="KKO20486.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20486">
        <property type="protein sequence ID" value="KKO20486"/>
        <property type="gene ID" value="BROFUL_00789"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20486.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="101" mass="12341" checksum="D2EFFD45DE0C0CA9" modified="2015-11-11" version="1">MPKISPKLGEFLVKTTKAKDIDDAFQRVFTDYLELKLKNLQETIEQFQSRWKMTFEEFKIMPKGPSFEKDAYSYDVEQDFWQWEEAETLKKHYESLKKEWM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZZ4</accession>
    <name>A0A0M2UZZ4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00103</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000013">
        <property type="protein sequence ID" value="KKO21165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21165">
        <property type="protein sequence ID" value="KKO21165"/>
        <property type="gene ID" value="BROFUL_00103"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="359" mass="40894" checksum="82380CCAB0BE57D8" modified="2015-11-11" version="1">MGATPCTDGITIEFGCQIRVELKDGSLESILKAFCKILPEILRDFIQKIVVGFGESAMAQSRKPFCCDECGNDKEFIWKTRHGKETKILTVFQWLRLEQLQVQCKRCGHKMYITRKLLGMERMKRIPPETYRKLGLVGSLTTYRVAKKIVSMFGWTVDKMTIWKSVQKTAAEIDFQLDEKGLPLGEADGTGVGIKGIAKRGKELKVFVQYKSGGGVRVAGLDIGDYNGSWDKLFGKSVKVFRKFSRFLLITDGDTSILDSLKGKIKVLVQRCLWHIPYQAKYVLWQDGVKSKGKEWLEVMSELMEVCAIRPLVDCQKTIEKMIESKRKRLDAVIQHCLSKGYTHTASYLENARLICLRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V012</accession>
    <name>A0A0M2V012_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative phage protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00072</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000008">
        <property type="protein sequence ID" value="KKO21190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21190">
        <property type="protein sequence ID" value="KKO21190"/>
        <property type="gene ID" value="BROFUL_00072"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.89"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018891">
        <property type="entry name" value="Abortive_phage_infection"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10592">
        <property type="entry name" value="AIPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="702" mass="80903" checksum="64EE5FD45F046BE8" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V059</accession>
    <name>A0A0M2V059_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">3-dehydroquinate synthase</fullName>
            <shortName evidence="8">DHQS</shortName>
            <ecNumber evidence="8">4.2.3.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8 10" type="primary">aroB</name>
        <name evidence="10" type="ORF">BROFUL_00040</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>7-phospho-2-dehydro-3-deoxy-D-arabino-heptonate = 3-dehydroquinate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:21968"/>
            <dbReference type="ChEBI" id="CHEBI:32364"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58394"/>
            <dbReference type="EC" id="4.2.3.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
        <cofactor evidence="8">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="8">Binds 1 divalent metal cation per subunit. Can use either Co(2+) or Zn(2+).</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 8">
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="8">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 2/7.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.3.4" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000006">
        <property type="protein sequence ID" value="KKO21245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21245">
        <property type="protein sequence ID" value="KKO21245"/>
        <property type="gene ID" value="BROFUL_00040"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.53"/>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00085"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003856">
        <property type="term" value="F:3-dehydroquinate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:cellular amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00110">
        <property type="entry name" value="DHQ_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016037">
        <property type="entry name" value="DHQ_synth_AroB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030963">
        <property type="entry name" value="DHQ_synth_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030960">
        <property type="entry name" value="DHQS/DOIS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01761">
        <property type="entry name" value="DHQ_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001455">
        <property type="entry name" value="DHQ_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01357">
        <property type="entry name" value="aroB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="7 8" id="KW-0170">Cobalt</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8 10" id="KW-0456">Lyase</keyword>
    <keyword evidence="2 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 8" id="KW-0520">NAD</keyword>
    <keyword evidence="3 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="DHQ_synthase" evidence="9">
        <location>
            <begin position="68"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="106"/>
            <end position="110"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="130"/>
            <end position="131"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="143"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="152"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="170"/>
            <end position="173"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="185"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="248"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="265"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001911"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO21245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="359" mass="39569" checksum="E92304ABF99D0525" modified="2015-11-11" version="1">MKTIRVHLSSQSYNILIDKGLLRHIGDILAQEKSPCKTLLITDTNVERVYGGAVSESLSRNKFDVRRIALKPGEEQKTLDTALMLYDACFDHKLDRNSLIVAVGGGVVGDISGFVAATFMRGVPFIQVPTSLLAQVDSSIGGKVAVNHPKGKNMIGSFYQPRAVFIDTDTLSTLPAVEMVTGLAEVIKYGVIRDAELFAFLENTLYDILQLNHTALVNIIATSCKIKAKVVEEDEKETHLRAILNYGHTIGHAIEALTGYKKYRHGEAVAIGMLYATKIAMEMGLTDSLVLERQLSLIRRLGLPLHTGLPPEDMVRALYTDKKTVAGRLRFILPLKIGEVAISDQVTEEIIYRVLNKPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V065</accession>
    <name>A0A0M2V065_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">DZANK-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01141</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000123">
        <property type="protein sequence ID" value="KKO20139.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20139">
        <property type="protein sequence ID" value="KKO20139"/>
        <property type="gene ID" value="BROFUL_01141"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025874">
        <property type="entry name" value="DZR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12773">
        <property type="entry name" value="DZR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="DZANK-type" evidence="4">
        <location>
            <begin position="18"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF12773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20139.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="85" mass="9799" checksum="25E9128A46F0C660" modified="2015-11-11" version="1">MSDQILTERDDRVCPNTNCQYDNHVKGANFCILCGTLLYHRCENCLDVNPRYARFCYYCGSSLSEIKPSVQYEADFGESFGKKPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0A8</accession>
    <name>A0A0M2V0A8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Ribonuclease PH</fullName>
            <shortName evidence="4">RNase PH</shortName>
            <ecNumber evidence="4">2.7.7.56</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">tRNA nucleotidyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rph</name>
        <name evidence="7" type="ORF">BROFUL_00662</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>phosphate + tRNA(n+1) = a ribonucleoside 5'-diphosphate + tRNA(n)</text>
            <dbReference type="Rhea" id="RHEA:10628"/>
            <dbReference type="Rhea" id="RHEA-COMP:17343"/>
            <dbReference type="Rhea" id="RHEA-COMP:17344"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57930"/>
            <dbReference type="ChEBI" id="CHEBI:173114"/>
            <dbReference type="EC" id="2.7.7.56"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homohexameric ring arranged as a trimer of dimers.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the RNase PH family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.56" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000087">
        <property type="protein sequence ID" value="KKO20626.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20626">
        <property type="protein sequence ID" value="KKO20626"/>
        <property type="gene ID" value="BROFUL_00662"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.841"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000175">
        <property type="term" value="F:3'-5'-exoribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009022">
        <property type="term" value="F:tRNA nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016075">
        <property type="term" value="P:rRNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008033">
        <property type="term" value="P:tRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd11362">
        <property type="entry name" value="RNase_PH_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00564">
        <property type="entry name" value="RNase_PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001247">
        <property type="entry name" value="ExoRNase_PH_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015847">
        <property type="entry name" value="ExoRNase_PH_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036345">
        <property type="entry name" value="ExoRNase_PH_dom2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027408">
        <property type="entry name" value="PNPase/RNase_PH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002381">
        <property type="entry name" value="RNase_PH_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018336">
        <property type="entry name" value="RNase_PH_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01138">
        <property type="entry name" value="RNase_PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03725">
        <property type="entry name" value="RNase_PH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55666">
        <property type="entry name" value="SSF55666"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01966">
        <property type="entry name" value="RNasePH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01277">
        <property type="entry name" value="RIBONUCLEASE_PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="1 4" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="3 4" id="KW-0819">tRNA processing</keyword>
    <keyword evidence="2 4" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="RNase_PH" evidence="5">
        <location>
            <begin position="10"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="domain" description="RNase_PH_C" evidence="6">
        <location>
            <begin position="159"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphate (substrate) binding" evidence="4">
        <location>
            <begin position="124"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="86"/>
        </location>
        <ligand>
            <name>phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <note>substrate</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00564"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF03725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20626.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="239" mass="26284" checksum="F726CE70E54B1C38" modified="2015-11-11" version="1">MRVDDRLSDELRLFSITRHFTKYAPGSVLIQTGNTKVICTASIEESVPPHIKNTGEGWITAEYSLLPSSTPVRAPRESTRGKVGGRTHEIQRLIGRSLRSIMDLALLKERTIWIDCDVIQADGGTRTAAITGSYIALMDAVRWLKSKDMIRENPVINSVAAVSVGVVNDAVLLDLCYAEDAAAQVDMNVVMTGDGKFIELQGTGEEYAFDDGQLAEMLKMAKKGIWEIIEIQKKALETA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0W3</accession>
    <name>A0A0M2V0W3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5 6">Elongation factor Ts</fullName>
            <shortName evidence="5">EF-Ts</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5 9" type="primary">tsf</name>
        <name evidence="9" type="ORF">BROFUL_00470</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 6">Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF-Tu.GTP complex up to the GTP hydrolysis stage on the ribosome.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5 7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the EF-Ts family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000062">
        <property type="protein sequence ID" value="KKO20801.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20801">
        <property type="protein sequence ID" value="KKO20801"/>
        <property type="gene ID" value="BROFUL_00470"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.585"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00050">
        <property type="entry name" value="EF_Ts"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036402">
        <property type="entry name" value="EF-Ts_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001816">
        <property type="entry name" value="Transl_elong_EFTs/EF1B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014039">
        <property type="entry name" value="Transl_elong_EFTs/EF1B_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018101">
        <property type="entry name" value="Transl_elong_Ts_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009060">
        <property type="entry name" value="UBA-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11741">
        <property type="entry name" value="PTHR11741"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00889">
        <property type="entry name" value="EF_TS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46934">
        <property type="entry name" value="SSF46934"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54713">
        <property type="entry name" value="SSF54713"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00116">
        <property type="entry name" value="tsf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01127">
        <property type="entry name" value="EF_TS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5 6" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="4 5 6" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="EF_TS" evidence="8">
        <location>
            <begin position="50"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="region of interest" description="Involved in Mg(2+) ion dislocation from EF-Tu" evidence="5">
        <location>
            <begin position="80"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20801.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="195" mass="21868" checksum="A5B57B4E1FA4333B" modified="2015-11-11" version="1">MADTASIMKLREQTGAGILECRNALDEVKGDFEKALEIIKKKGIAKAAKKEQRVTAEGRIGTYIHTNGKLGVMVELNCETDFVAKNEVFQQLLKDICMQVAATKPLAVKREDIPGHLVEEQKKIFNEEAKGKPAHILEKITSGKMDSFYKEKCLMEQPFIKDNTQTIQDLLVANIAKIGENIKVNRFVRFEVGEC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1C2</accession>
    <name>A0A0M2V1C2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative cytochrome b6</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00758</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000096">
        <property type="protein sequence ID" value="KKO20514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20514">
        <property type="protein sequence ID" value="KKO20514"/>
        <property type="gene ID" value="BROFUL_00758"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022904">
        <property type="term" value="P:respiratory electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.810.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005797">
        <property type="entry name" value="Cyt_b/b6_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027387">
        <property type="entry name" value="Cytb/b6-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016174">
        <property type="entry name" value="Di-haem_cyt_TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00033">
        <property type="entry name" value="Cytochrome_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81342">
        <property type="entry name" value="SSF81342"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51002">
        <property type="entry name" value="CYTB_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="100"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="153"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="186"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="223"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="domain" description="CYTB_NTER" evidence="2">
        <location>
            <begin position="70"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="254" mass="29334" checksum="04863847E7DADFAC" modified="2015-11-11" version="1">MFQYSLADDERYGLQEKGFLFRLAFFVCRTHVQRRKRIVSFERYSLEGSVTWQNKEVLRRVTVSDKEHEFAKSMNRESGFLKEIVEKNITQKLIPKGMSWFGCMGGISLVAFLIQTITGVFLMFYFVPSTKEAVASIQQITHHVPFGWFMQHIHAVGPNIMIGVVVGHMARIFYKGIYRHPRELHWVSGSCLFILTLLMYYTGNLLSVGNMNEPVAIRLSYLYVVHVAVIPGIMVSFMGMHFFMIRKTGICEPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1P1</accession>
    <name>A0A0M2V1P1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">dCMP deaminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">comEB</name>
        <name evidence="8" type="ORF">BROFUL_00667</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 6">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the cytidine and deoxycytidylate deaminase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000088">
        <property type="protein sequence ID" value="KKO20604.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20604">
        <property type="protein sequence ID" value="KKO20604"/>
        <property type="gene ID" value="BROFUL_00667"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.849"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004132">
        <property type="term" value="F:dCMP deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006220">
        <property type="term" value="P:pyrimidine nucleotide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01286">
        <property type="entry name" value="deoxycytidylate_deaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016192">
        <property type="entry name" value="APOBEC/CMP_deaminase_Zn-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002125">
        <property type="entry name" value="CMP_dCMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016193">
        <property type="entry name" value="Cytidine_deaminase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016473">
        <property type="entry name" value="dCMP_deaminase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015517">
        <property type="entry name" value="dCMP_deaminase-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035105">
        <property type="entry name" value="Deoxycytidylate_deaminase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11086">
        <property type="entry name" value="PTHR11086"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00383">
        <property type="entry name" value="dCMP_cyt_deam_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006019">
        <property type="entry name" value="dCMP_deaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53927">
        <property type="entry name" value="SSF53927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00903">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51747">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="CMP/dCMP-type deaminase" evidence="7">
        <location>
            <begin position="6"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="5">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="79"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="107"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="110"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR006019-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR006019-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20604.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="151" mass="16781" checksum="60E479EAC0311DAA" modified="2015-11-11" version="1">MSKRPSWDEYFLRITREVAQRATCLRRQVGALLVMDKHILTTGYNGAPSGLQHCLEIGCLREQLKIPPGERHELCRGLHAEMNALIQAAHYGIKISGATLYSTTYPCSLCAKMLVNAGIKRIVTLTDYPDPLAKEILSLANVAVEFVKLDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V217</accession>
    <name>A0A0M2V217_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00100</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000011">
        <property type="protein sequence ID" value="KKO21171.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21171">
        <property type="protein sequence ID" value="KKO21171"/>
        <property type="gene ID" value="BROFUL_00100"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="16"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21171.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="196" mass="22356" checksum="020028BAC04214BA" modified="2015-11-11" version="1">MVQQTAYKEIEEVKTYKKLKNQLLAEQKTLSDTESKLAQIKQSIKELEERSSKGEVVKKDAIERFVKNEITQAELDSTRKKVLAMTKEYSDALELTSFSEEVIAEQQSGISKIEREMKAVSSDIWDKIAVICQDKFEKAVGDTASFLWVAMRSGGRYVPMLYPNDLPERFRAIAAPDSKECETIKTSLWNEFVGVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V241</accession>
    <name>A0A0M2V241_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00073</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000008">
        <property type="protein sequence ID" value="KKO21191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21191">
        <property type="protein sequence ID" value="KKO21191"/>
        <property type="gene ID" value="BROFUL_00073"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="45" mass="5577" checksum="5A969E5F66E7BEBF" modified="2015-11-11" version="1">MNKREELRLLTDKCIELLKEKYHVKKIFLIVSYRNYFDPFSKNIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2N4</accession>
    <name>A0A0M2V2N4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00312</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000036">
        <property type="protein sequence ID" value="KKO20959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20959">
        <property type="protein sequence ID" value="KKO20959"/>
        <property type="gene ID" value="BROFUL_00312"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="87" mass="9621" checksum="B7141458F8FA172C" modified="2015-11-11" version="1">MKNIAQKAERRQPKIRTKMNGKGLAIHAGLLPAPTFIEKLLFRKRAQETVRQGRVENTRYQVVGAVHMEVIGLIAGATSVVQVGMGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UP23</accession>
    <name>A0A0M2UP23_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Fibronectin type-III domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03436</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000313">
        <property type="protein sequence ID" value="KKO17888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17888">
        <property type="protein sequence ID" value="KKO17888"/>
        <property type="gene ID" value="BROFUL_03436"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013784">
        <property type="entry name" value="Carb-bd-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="SSF49265"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49452">
        <property type="entry name" value="SSF49452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="domain" description="Fibronectin type-III" evidence="3">
        <location>
            <begin position="77"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="559"/>
            <end position="591"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="559"/>
            <end position="581"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO17888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="591" mass="63624" checksum="96DAADF26766D90C" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UP81</accession>
    <name>A0A0M2UP81_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03389</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17938">
        <property type="protein sequence ID" value="KKO17938"/>
        <property type="gene ID" value="BROFUL_03389"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17938.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="106" mass="12525" checksum="C705B6765725BC5D" modified="2015-11-11" version="1">MSFAFFVYASFEDKHDEKCYKEYDYGFLHVIYTGIDKIQGGVFYGEKAVKSAFGKNKEKESKYLKLLNKIDQLVEEIAKVAGIFKRESEKKYRKNKSMTYNVYLQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UP96</accession>
    <name>A0A0M2UP96_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_03361</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000308">
        <property type="protein sequence ID" value="KKO17953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17953">
        <property type="protein sequence ID" value="KKO17953"/>
        <property type="gene ID" value="BROFUL_03361"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4136"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020472">
        <property type="entry name" value="G-protein_beta_WD-40_rep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011045">
        <property type="entry name" value="N2O_reductase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011047">
        <property type="entry name" value="Quinoprotein_ADH-like_supfam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019775">
        <property type="entry name" value="WD40_repeat_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="12"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00320">
        <property type="entry name" value="GPROTEINBRPT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="12"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50974">
        <property type="entry name" value="SSF50974"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50998">
        <property type="entry name" value="SSF50998"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00678">
        <property type="entry name" value="WD_REPEATS_1"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="12"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1 3" id="KW-0853">WD repeat</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="496"/>
            <end position="516"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="608"/>
            <end position="649"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="650"/>
            <end position="691"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="735"/>
            <end position="776"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="777"/>
            <end position="818"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="818"/>
            <end position="859"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="859"/>
            <end position="900"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="900"/>
            <end position="941"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="942"/>
            <end position="983"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="984"/>
            <end position="1025"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="1026"/>
            <end position="1067"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="1067"/>
            <end position="1108"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="1109"/>
            <end position="1150"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="455"/>
            <end position="492"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO17953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1179" mass="132394" checksum="6A184CE2B08BAE79" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPF0</accession>
    <name>A0A0M2UPF0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Site-specific DNA-methyltransferase (adenine-specific)</fullName>
            <ecNumber evidence="2">2.1.1.72</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03309</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 2'-deoxyadenosine in DNA + S-adenosyl-L-methionine = an N(6)-methyl-2'-deoxyadenosine in DNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:15197"/>
            <dbReference type="Rhea" id="RHEA-COMP:12418"/>
            <dbReference type="Rhea" id="RHEA-COMP:12419"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:90615"/>
            <dbReference type="ChEBI" id="CHEBI:90616"/>
            <dbReference type="EC" id="2.1.1.72"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.72" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000302">
        <property type="protein sequence ID" value="KKO17998.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17998">
        <property type="protein sequence ID" value="KKO17998"/>
        <property type="gene ID" value="BROFUL_03309"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4078"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009007">
        <property type="term" value="F:site-specific DNA-methyltransferase (adenine-specific) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022749">
        <property type="entry name" value="D12N6_MeTrfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038333">
        <property type="entry name" value="T1MK-like_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12161">
        <property type="entry name" value="HsdM_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HsdM_N" evidence="3">
        <location>
            <begin position="16"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF12161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO17998.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="93" mass="10813" checksum="CC2BD1C07374D979" modified="2015-11-11" version="1">MARAIKERIGSVDEPLEKKLWKAADKLRKNMDAAEYKHVVLGLIFLKYISDAFEELYEKLKEGKGDYEGADPEDKNEYTAEKVFYVPPSARWK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPY2</accession>
    <name>A0A0M2UPY2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">TIR domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03360</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000308">
        <property type="protein sequence ID" value="KKO17952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17952">
        <property type="protein sequence ID" value="KKO17952"/>
        <property type="gene ID" value="BROFUL_03360"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4135"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003953">
        <property type="term" value="F:NAD+ nucleosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019677">
        <property type="term" value="P:NAD catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000157">
        <property type="entry name" value="TIR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035897">
        <property type="entry name" value="Toll_tir_struct_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52200">
        <property type="entry name" value="SSF52200"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50104">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TIR" evidence="1">
        <location>
            <begin position="7"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO17952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="502" mass="56597" checksum="7B8E0ED94150C3A6" modified="2015-11-11" version="1">MAYIPGFEHDIFISYAHVDNCAIQGKSCWVNQFHEELEIALAKCIGRMGLVKIWRDMRLEGNQLLDNTIQSAIDKSALFLALTSHGYFHPDSYCPKELQLFHTKAQAEKYGLQMGDRSRIYNVLLSNIPYDKWPKEFSGMSGYPFHDAEKTDAVGMPTDPADKRFHDQLRKLVDSLHTMLQAFKTKAEGTATRKPGKETVSLKDIPCVFVSDVSDSLRSVRSRVVNDLQRKGIKIVSNIPPPYEARAHEERVSVVLKESVLSVHLLDGYSGREIEGEPDISYPRKQVELALNATAAQLIWASKDLDLETIEDECQKEFLTKLESDDRTRAAYDFIRGIPADLVPQIIEKIERLQTAAKANGAPHAVLLDTHVKDQRYALDLSKFLLENNIQPYINPQEDDPGKNMDALEARLKEVSMLMILFGSVNENWVRQRLSAALQLSFTKKFPIKYFCVFAIPPEKRDLNFNLGQAIRVHLIDNSKSASIESGALAPVLHLMQKGGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQA9</accession>
    <name>A0A0M2UQA9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">N-acetylmuramoyl-L-alanine amidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03243</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the N-acetylmuramoyl-L-alanine amidase 2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000296">
        <property type="protein sequence ID" value="KKO18072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18072">
        <property type="protein sequence ID" value="KKO18072"/>
        <property type="gene ID" value="BROFUL_03243"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008745">
        <property type="term" value="F:N-acetylmuramoyl-L-alanine amidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009253">
        <property type="term" value="P:peptidoglycan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06583">
        <property type="entry name" value="PGRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.80.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036505">
        <property type="entry name" value="Amidase/PGRP_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002502">
        <property type="entry name" value="Amidase_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015510">
        <property type="entry name" value="PGRP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006619">
        <property type="entry name" value="PGRP_domain_met/bac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11022">
        <property type="entry name" value="PTHR11022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01510">
        <property type="entry name" value="Amidase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00701">
        <property type="entry name" value="PGRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55846">
        <property type="entry name" value="SSF55846"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PGRP" evidence="2">
        <location>
            <begin position="51"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="163" mass="18278" checksum="2822FDCF2FDD7BF5" modified="2015-11-11" version="1">MHLRWKIGICLSFLTLEFLGCYVPPVSRPTPAVRPRESAGMPVKPQKKEEPYIVSQLDSYSVRNWRYIVIHHSASASGSAAQFDKYHREKRRWENGLGYHFVIGNGNGAPDGKIEIGNRWISQIDGAHAGVQEYNHYGIGICLVGNFNESYPTAAQMASLSAW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQL7</accession>
    <name>A0A0M2UQL7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03156</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000289">
        <property type="protein sequence ID" value="KKO18162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18162">
        <property type="protein sequence ID" value="KKO18162"/>
        <property type="gene ID" value="BROFUL_03156"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3892"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1290">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002686">
        <property type="entry name" value="Transposase_17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036515">
        <property type="entry name" value="Transposase_17_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01797">
        <property type="entry name" value="Y1_Tnp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01321">
        <property type="entry name" value="Y1_Tnp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143422">
        <property type="entry name" value="SSF143422"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Y1_Tnp" evidence="1">
        <location>
            <begin position="11"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="144" mass="17346" checksum="CC4B48F3CCF9FF0B" modified="2015-11-11" version="1">MSRFRKVSHTLWHCQYHILWTPKYRLRILTGQVAEEVNRCIRAFSEQKGCKVIELNVQIDHVHLIAMVVPKISISEFVGIVKGRTAIRIFNKCRHLKQKPYWGNHFWSRGYCVDTVGLDEEKVRKYVKYQEQKERQEEQKNFKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQR4</accession>
    <name>A0A0M2UQR4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">JAB_MPN domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02867</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000270">
        <property type="protein sequence ID" value="KKO18433.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18433">
        <property type="protein sequence ID" value="KKO18433"/>
        <property type="gene ID" value="BROFUL_02867"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3550"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070122">
        <property type="term" value="F:isopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140492">
        <property type="term" value="F:metal-dependent deubiquitinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028090">
        <property type="entry name" value="JAB_dom_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000555">
        <property type="entry name" value="JAMM/MPN+_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14464">
        <property type="entry name" value="Prok-JAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00232">
        <property type="entry name" value="JAB_MPN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="JAB_MPN" evidence="6">
        <location>
            <begin position="1"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18433.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="138" mass="15712" checksum="EB6B714F2B4CEFE0" modified="2015-11-11" version="1">MLCIDKNNLREVGNEAKKSYPVECCGLLIGTNTSEKKVVEVRPIRNTNTERSHDRYEIDGSAFVKADKEAARKGLQIIGIYHSHPDHPPVPSAFDTEHAWCGYSYLIAAVENGETLEIRSWVFDEEKKQFQEEEINLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQX2</accession>
    <name>A0A0M2UQX2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative histidine kinase protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02994</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18267.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18267">
        <property type="protein sequence ID" value="KKO18267"/>
        <property type="gene ID" value="BROFUL_02994"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004722">
        <property type="term" value="F:protein serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001932">
        <property type="entry name" value="PPM-type_phosphatase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13581">
        <property type="entry name" value="HATPase_c_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07228">
        <property type="entry name" value="SpoIIE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="4"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18267.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="513" mass="57791" checksum="4BD6FC412147A1ED" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQZ3</accession>
    <name>A0A0M2UQZ3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Molybdopterin-guanine dinucleotide biosynthesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02778</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000264">
        <property type="protein sequence ID" value="KKO18508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18508">
        <property type="protein sequence ID" value="KKO18508"/>
        <property type="gene ID" value="BROFUL_02778"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3439"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004435">
        <property type="entry name" value="MobB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03205">
        <property type="entry name" value="MobB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00176">
        <property type="entry name" value="mobB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MobB" evidence="1">
        <location>
            <begin position="15"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="183" mass="20342" checksum="460F6FC762514855" modified="2015-11-11" version="1">MISFIIGVVQPKVPVISIVGKSHSGKTTLVVKLVQELKSRGYRVATIKHSHHSFEIDREGKDSWLHTRAGADAVVVSSQTMTGVMRITPRELPLSEIVNTYLTDVDIVLAEGYKTLTLPKIEVLRSEISNTLICRDDQNLIAVVSDKAPEIRVPFFPIGDTVSALADFILERLKEPRSTRETH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR11</accession>
    <name>A0A0M2UR11_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5 6">50S ribosomal protein L19</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rplS</name>
        <name evidence="8" type="ORF">BROFUL_03029</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 6">This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the bacterial ribosomal protein bL19 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18302">
        <property type="protein sequence ID" value="KKO18302"/>
        <property type="gene ID" value="BROFUL_03029"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3738"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00402">
        <property type="entry name" value="Ribosomal_L19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038657">
        <property type="entry name" value="L19_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001857">
        <property type="entry name" value="Ribosomal_L19"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018257">
        <property type="entry name" value="Ribosomal_L19_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15680">
        <property type="entry name" value="PTHR15680"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01245">
        <property type="entry name" value="Ribosomal_L19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002191">
        <property type="entry name" value="Ribosomal_L19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00061">
        <property type="entry name" value="RIBOSOMALL19"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="SSF50104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01024">
        <property type="entry name" value="rplS_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01015">
        <property type="entry name" value="RIBOSOMAL_L19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 8" id="KW-0689">Ribosomal protein</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="104"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="110"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00402"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="138" mass="15523" checksum="675D883DC8F223ED" modified="2015-11-11" version="1">MNIIDAIEKEQMKKAVPQFSVGDQVDVSVKIIEGEKERIQVFSGVVIAKNGGGFKETFTVRRIVQGEGVERVFPIHSPKIVDIKVLKSGRVRRAKLYYMRKRTSKGTRLQEKFESPASKTIPAQSTQTRGTQTQTDTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR40</accession>
    <name>A0A0M2UR40_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Lactamase_B domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02746</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000256">
        <property type="protein sequence ID" value="KKO18558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18558">
        <property type="protein sequence ID" value="KKO18558"/>
        <property type="gene ID" value="BROFUL_02746"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12706">
        <property type="entry name" value="Lactamase_B_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="26"/>
            <end position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="265" mass="29940" checksum="30B278E1F436911E" modified="2015-11-11" version="1">MAGKNPANMELTIIGSGTGIPSRTRAYPCTLVKIKKNHLVFDTGPGSLRQLFLAGITYLEIDHLYYSHFHADHSLDLVSILFAMRCNDPKRTKPLSVSGPVGLRTFYEGLLSVFGETIKPKTYDLHFREIEKEEIIFDGWKIIAEPLRHTTSMHSIGYRIESAEGKTLTYSGDTGYCNGILRLAKKVNTLVLECSFPDDQEVEGHLTPSLCAQIADESQCDRLVLSHFYPVFDTFRKDHKHLPDTLKDIYKGEIVFAEDFTRIPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR93</accession>
    <name>A0A0M2UR93_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Two-component sensor kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_02898</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18392">
        <property type="protein sequence ID" value="KKO18392"/>
        <property type="gene ID" value="BROFUL_02898"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1902531">
        <property type="term" value="P:regulation of intracellular signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001610">
        <property type="entry name" value="PAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013656">
        <property type="entry name" value="PAS_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013767">
        <property type="entry name" value="PAS_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13185">
        <property type="entry name" value="GAF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00989">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08448">
        <property type="entry name" value="PAS_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00065">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00086">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 5" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Response regulatory" evidence="7">
        <location>
            <begin position="22"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="8">
        <location>
            <begin position="317"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="9">
        <location>
            <begin position="389"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="9">
        <location>
            <begin position="512"/>
            <end position="564"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="6">
        <location>
            <begin position="584"/>
            <end position="796"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="5">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO18392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="803" mass="91388" checksum="C20A19E02839CBE9" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URF1</accession>
    <name>A0A0M2URF1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ATP binding site of ABC transporter Glcv</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">glcv</name>
        <name evidence="5" type="ORF">BROFUL_02856</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000269">
        <property type="protein sequence ID" value="KKO18447.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18447">
        <property type="protein sequence ID" value="KKO18447"/>
        <property type="gene ID" value="BROFUL_02856"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3534"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="126"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="158"/>
            <end position="165"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18447.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="435" mass="48311" checksum="0B49CFFC34E96EBE" modified="2015-11-11" version="1">MKQKVGLCGALVHEPDLLILDEPTTGVDPLSRRQFWTLIDDIRKGRPGMSVVISTAYMDEAQQWDWIVAMDAGRVLATGTPAELMKRTNTRDLEQCFIALLPEEKRAGHKEITIPPRVDAKSEIVIEAKDLTRRFGSFTAVDHVSLSIERGEIFGFLGSNGCGKSTTMKMLTGLLPPTEGTAALFGGQSIEAGSIEVRNHIGYMTQAFSLYGELSVRQNLVLDARLYHIPPDKAKARIEELVDKFGLRAHLDSLAEDLPLGMRQRLSLAVAVLHEPELLILDEPTSGVDPVARDSFWELLIDLSRKQGVTIFVTTHFMNEAMRCDRISLMHAGKVLACDAPQKLIGERGADTLEDAFIGTWKTLLAMLRPKTKARTRQRSAHPRRPCSLQLSQRLRSAVRAGSVLFACLPTRTMRLCRSAAIRCVWPLPSLVQHC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URT5</accession>
    <name>A0A0M2URT5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA topoisomerase (ATP-hydrolyzing)</fullName>
            <ecNumber evidence="3">5.6.2.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_02506</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP-dependent breakage, passage and rejoining of double-stranded DNA.</text>
            <dbReference type="EC" id="5.6.2.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.2" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000235">
        <property type="protein sequence ID" value="KKO18783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18783">
        <property type="protein sequence ID" value="KKO18783"/>
        <property type="gene ID" value="BROFUL_02506"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3113"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003918">
        <property type="term" value="F:DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006265">
        <property type="term" value="P:DNA topological change"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.670">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001241">
        <property type="entry name" value="Topo_IIA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013760">
        <property type="entry name" value="Topo_IIA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013759">
        <property type="entry name" value="Topo_IIA_B_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013506">
        <property type="entry name" value="Topo_IIA_bsu_dom2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00204">
        <property type="entry name" value="DNA_gyraseB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00433">
        <property type="entry name" value="TOP2c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56719">
        <property type="entry name" value="SSF56719"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HATPase_c" evidence="5">
        <location>
            <begin position="39"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="506" mass="56322" checksum="346BED8ACD2F8925" modified="2015-11-11" version="1">MIEENSVAFQKEIYDSNSIKVLGGIEAVRKRPAMYIGDTTAKGLHHLVEEVVCNSVDEAVAGFCENIQVKINIDGSATVTDDGRGIPVDVHKETNKSALEVVMTVLHAGGKFEHKSYKISGGLHGVGVSVVNALSEWMEVEVKRDGHVYFQRYEKGEVRSPVEVRGVTKKRGTRVVFKPDREIFEDTKFCFETIAKRLREYAFLNKGIKITLTDERTDKSETYQYEGGIKAFIKELNEGKEVVHKDIIYFEKESKGTIVEVAMQYNDGYSENVYSFANNINTVEGGTHLSGFRAALTRTLNGYAKSKGILSEEKAPLGDDYKEGLTAVISIKLPDPQFEGQTKTKLGNREVQSLVEAVINEQLGTYCEETPSTAKAIINKGIDAARAREAARKARDLTRRKGALGSSNLPGKLADCSSRDFETSELFLVEGISAGGTAKQGRDRTFQAILPLKGVILNVEKARIDKMLSNEEIRTLISAWNGHRNGRIQCKQSAVRQDYYYDRCRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US46</accession>
    <name>A0A0M2US46_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Molybdenum cofactor biosynthesis protein A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">moaA_2</name>
        <name evidence="6" type="ORF">BROFUL_02613</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18662.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18662">
        <property type="protein sequence ID" value="KKO18662"/>
        <property type="gene ID" value="BROFUL_02613"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3240"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023885">
        <property type="entry name" value="4Fe4S-binding_SPASM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13186">
        <property type="entry name" value="SPASM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="5">
        <location>
            <begin position="31"/>
            <end position="250"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18662.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="362" mass="42637" checksum="BF27C644B5100C6F" modified="2015-11-11" version="1">MKECAPEMDKYRIDSHKLIYHVQRVHDWLEGKNVYPIYAEISPSGTCNHRCTYCALDFMEYQPRFLEKDLLKERLSEMALLGLKSVMYAGEGEPLLHKDMGEIIRHTRNAGIDVALTTNGVCFKKDLIGRTLENITWIKVSINGGTKETYAKIHQTKPDHFDQIIENMSYAATLRHDKGYRCALGMQLILLPENWNEAELLARLAKEIGMDYLVIKPYSQHPLSRTMKYKDIKYRDYLHLADTLRTFNDRNFSVIFRSNTMKKWDEGQRNYRQCLALPFWSYIDAGGTVWGCSAYLSDEHFAYGNLYKNTFQEIWEGKKRLTSLRWTSEKLDISQCRMNCRMDEINRYLWQLRHPPEHVNFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US51</accession>
    <name>A0A0M2US51_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Carbamoyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02618</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18667.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18667">
        <property type="protein sequence ID" value="KKO18667"/>
        <property type="gene ID" value="BROFUL_02618"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3245"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.870.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031730">
        <property type="entry name" value="Carbam_trans_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038152">
        <property type="entry name" value="Carbam_trans_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16861">
        <property type="entry name" value="Carbam_trans_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Carbam_trans_C" evidence="1">
        <location>
            <begin position="34"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF16861"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18667.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="210" mass="24169" checksum="51129D34DAD8AB2E" modified="2015-11-11" version="1">MYWGPQYGNDEIEALLKERNLPYRKADNVAKEAARALADQKIVGWFQGRMESGPRALGGRSILFDPGKPENKDIINKRVKFREPFRPFCPSLMEEYAHEYLSTSHKDRYMITACTVKDEKRKIIPAVTHVDGTCRPQFISRQINKRFWELLDAFRQYTGVPVILNTSFNIKGEPIVCSPRDAIKCFFDTGLDALCIGDFVVTKQQSFNRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USD1</accession>
    <name>A0A0M2USD1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02752</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000258">
        <property type="protein sequence ID" value="KKO18545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18545">
        <property type="protein sequence ID" value="KKO18545"/>
        <property type="gene ID" value="BROFUL_02752"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="79"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="118"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="149"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="190"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="206" mass="22219" checksum="1694E24BF039F333" modified="2015-11-11" version="1">MYNTTISLIGATFLIALTHAIMPNHWMPFALIGKGQKWSLTKTVFITTIAGLGHSIATTILGFIIAILGFHITKYAETFAEPLAGGILIVLGIIYVVVGRLRHGTHNHNHAKFSDKTIAISLFVMLSSSPCVAALPIFLAASAFSWGKLLLLSIILSVTTISGMLVLTILAYNGVKKINLCSIEEYEKEIIGGILIVIGIISFMVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USE2</accession>
    <name>A0A0M2USE2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Cytochrome c domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02537</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18757">
        <property type="protein sequence ID" value="KKO18757"/>
        <property type="gene ID" value="BROFUL_02537"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13442">
        <property type="entry name" value="Cytochrome_CBB3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0349">Heme</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="7"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="48"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="89"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="6">
        <location>
            <begin position="148"/>
            <end position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="256" mass="29214" checksum="FE09C0F38D743FEC" modified="2015-11-11" version="1">MAKKRSAFLLIWVITAVGCLYLFLKYAAPKIFQILMAKDHLMPTPSTLMMWYMIMGVLAGLVYATTSNQKFVDFLSFLLPDRGPMIKSFLQKILFVGFPVLVGWFVYTWAIPGAASPVELRIQHPTLPQEFEKLENPFRQTDGETQRKCVEEGKILFQTYCRPCHGSKADGNGPFANSFRLRPINFQDPGTIATVVDNYLFWRIKEGGPGLPSESTPWDSAMPSWKDDLKDDEIWKIIMGEYDTAGVMPRQREKLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USQ4</accession>
    <name>A0A0M2USQ4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">iSTAND domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02667</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000245">
        <property type="protein sequence ID" value="KKO18630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18630">
        <property type="protein sequence ID" value="KKO18630"/>
        <property type="gene ID" value="BROFUL_02667"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045475">
        <property type="entry name" value="iSTAND"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19995">
        <property type="entry name" value="iSTAND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="iSTAND" evidence="1">
        <location>
            <begin position="56"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF19995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="324" mass="38000" checksum="C1E2A0F2D52B02CC" modified="2015-11-11" version="1">MVVSIDTSDNRTTTYMIPASQLIKAWPELGKQRKAGDHAKVDSERRPRESFIYFLPYLSDRSQQADRLELTLDECEDCLHEKPLVSIIHGDEKECHDKFIKRLHEVMLPQMLCEPGRVHVDLTMVEWPSMKEDIKMRCKKLTNNISKALTGSRRANAGEIKEALNRKISPQMIYFTLPVAAWEENEAELVKYWLQYWNEFPDLNAGRKLMVFLCMKYKHIADNHAEGSEMYRKKNDAARHFIHALQYVEYANIIGLTLDELQAVAWGDVDMWITTYAEKFCNDTELRTRAMDYYKNREKVPMLELAEKLEHLLSETWRKEGSFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USS8</accession>
    <name>A0A0M2USS8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02381</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000228">
        <property type="protein sequence ID" value="KKO18902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18902">
        <property type="protein sequence ID" value="KKO18902"/>
        <property type="gene ID" value="BROFUL_02381"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005643982" evidence="2">
        <location>
            <begin position="25"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="88" mass="9366" checksum="C7C2331E03DAC246" modified="2015-11-11" version="1">MKKRLALGFLIVFLFTMLDGGAYAQQRHSGGGGGHGGGSGGKPPVVPEPMSYLIFSVSGATYIGIRYLRARKNAKKLHSQSKNTAEEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT59</accession>
    <name>A0A0M2UT59_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02043</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19243.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19243">
        <property type="protein sequence ID" value="KKO19243"/>
        <property type="gene ID" value="BROFUL_02043"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="63"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19243.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="93" mass="10244" checksum="2D07FDD8715095D1" modified="2015-11-11" version="1">MVKKIQLIVFLFLLVPVSFTGFSVLARPAPVNPATSTTSSVSVQPLQSPLPELPQTQRSKLKIIQYTLLPLAVGVSTWFLMCLEKTEENKADT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT76</accession>
    <name>A0A0M2UT76_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02228</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19047">
        <property type="protein sequence ID" value="KKO19047"/>
        <property type="gene ID" value="BROFUL_02228"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004343">
        <property type="term" value="F:glucosamine 6-phosphate N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006048">
        <property type="term" value="P:UDP-N-acetylglucosamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039143">
        <property type="entry name" value="GNPNAT1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13355">
        <property type="entry name" value="PTHR13355"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13673">
        <property type="entry name" value="Acetyltransf_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="142" mass="16384" checksum="FE28ED306DFA5978" modified="2015-11-11" version="1">MFKVITNLDDLIKVFIIRGIVFLEEQGIPYTIERDAYDYSATHVLGEERGEPFAAGRILALDGYAKLERLAIRKSHRGKNLGHKLTEFMLSVAKNQGFQKFKVHAQTHLVDFYRKHGFEVVGDVFQEAGIDHYVMLYHPYPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT96</accession>
    <name>A0A0M2UT96_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01997</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000202">
        <property type="protein sequence ID" value="KKO19283.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19283">
        <property type="protein sequence ID" value="KKO19283"/>
        <property type="gene ID" value="BROFUL_01997"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19283.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="142" mass="16079" checksum="ED170B630C4C0B3E" modified="2015-11-11" version="1">MPTFISLRRDSTTNCISLQQIYSIDKGWEKDSFSEEVFVKSILIGIAHGESALSGFEALTGLRIPGMKHHTTGKYLCSVFLKYHLATPYQSFAGLKSPNDRGHCPPIHYLLNASGMLVEGLLKFQINTPTRLRHPYLKRRRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT98</accession>
    <name>A0A0M2UT98_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02248</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19067.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19067">
        <property type="protein sequence ID" value="KKO19067"/>
        <property type="gene ID" value="BROFUL_02248"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="2">
        <location>
            <begin position="50"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19067.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="191" mass="21847" checksum="938D9B052A9485C6" modified="2015-11-11" version="1">MNKKQNKHKKPAVWQRHRIEKGPHLEILQARFDWLKHPRNHKEMKRLVLEANDWVNVVATTPGNEIVVVRQYRFGIGKITTEIPGGMVDHGEDSRAAAIRELKEETGYTCANWIYLGSVEPNPAILNNVCHSWHAKDAVQTGEMHPDEGEDIVVATLTLDEVRYEIKEGNFRHSLALLALTKVFNLWNGTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT99</accession>
    <name>A0A0M2UT99_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">Probable dual-specificity RNA methyltransferase RlmN</fullName>
            <ecNumber evidence="12">2.1.1.192</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12">23S rRNA (adenine(2503)-C(2))-methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12">23S rRNA m2A2503 methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12">Ribosomal RNA large subunit methyltransferase N</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12">tRNA (adenine(37)-C(2))-methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12">tRNA m2A37 methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="primary">rlmN</name>
        <name evidence="14" type="ORF">BROFUL_02433</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>adenosine(2503) in 23S rRNA + 2 reduced [2Fe-2S]-[ferredoxin] + 2 S-adenosyl-L-methionine = 2-methyladenosine(2503) in 23S rRNA + 5'-deoxyadenosine + L-methionine + 2 oxidized [2Fe-2S]-[ferredoxin] + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42916"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="Rhea" id="RHEA-COMP:10152"/>
            <dbReference type="Rhea" id="RHEA-COMP:10282"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74411"/>
            <dbReference type="ChEBI" id="CHEBI:74497"/>
            <dbReference type="EC" id="2.1.1.192"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>adenosine(37) in tRNA + 2 reduced [2Fe-2S]-[ferredoxin] + 2 S-adenosyl-L-methionine = 2-methyladenosine(37) in tRNA + 5'-deoxyadenosine + L-methionine + 2 oxidized [2Fe-2S]-[ferredoxin] + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:43332"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="Rhea" id="RHEA-COMP:10162"/>
            <dbReference type="Rhea" id="RHEA-COMP:10485"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74411"/>
            <dbReference type="ChEBI" id="CHEBI:74497"/>
            <dbReference type="EC" id="2.1.1.192"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="12">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="12">Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 12">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="12">Reaction proceeds by a ping-pong mechanism involving intermediate methylation of a conserved cysteine residue.</text>
    </comment>
    <comment type="similarity">
        <text evidence="12">Belongs to the radical SAM superfamily. RlmN family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.192" evidence="12"/>
    <dbReference type="EMBL" id="LAQJ01000232">
        <property type="protein sequence ID" value="KKO18840.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18840">
        <property type="protein sequence ID" value="KKO18840"/>
        <property type="gene ID" value="BROFUL_02433"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3024"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070040">
        <property type="term" value="F:rRNA (adenine-C2-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002935">
        <property type="term" value="F:tRNA (adenine-C2-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070475">
        <property type="term" value="P:rRNA base methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01849">
        <property type="entry name" value="RNA_methyltr_RlmN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040072">
        <property type="entry name" value="Methyltransferase_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027492">
        <property type="entry name" value="RNA_MTrfase_RlmN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004383">
        <property type="entry name" value="rRNA_lsu_MTrfase_RlmN/Cfr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30544">
        <property type="entry name" value="PTHR30544"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006004">
        <property type="entry name" value="CHP00048"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00275">
        <property type="entry name" value="adenosine_C2_methyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00048">
        <property type="entry name" value="rRNA_mod_RlmN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 12" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="3 12" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="11 12" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="9 12" id="KW-0408">Iron</keyword>
    <keyword evidence="10 12" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="8 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 12 14" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 12" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="7 12" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="6 12 14" id="KW-0808">Transferase</keyword>
    <keyword evidence="12" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="Radical SAM core" evidence="13">
        <location>
            <begin position="107"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="12">
        <location>
            <begin position="170"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="12">
        <location>
            <begin position="225"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="12">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <feature type="active site" description="S-methylcysteine intermediate" evidence="12">
        <location>
            <position position="344"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="121"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="125"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="128"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="202"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="301"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KKO18840.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="364" mass="41212" checksum="D197FCA17DDF48F9" modified="2015-11-11" version="1">MQWRYAMDKTKLLSITNMSLSELEAWCTSLGEPTYRAKQMLSWVYDKGAMAFDQMSNLPKNFQKHLAGQRRVFQTSISDITQTAYGTEKFLVHVSDGNVIECVLLREGKRTTVCISTQVGCAMACQFCASGLPGLERNLTTGEIVEQALHVKNHLPREERITNIVFMGIGEPLMNYDNVIKAARIMNAEWGFGIGARHITISTVGIIDGIRRLAHEGLQINLAISLHAPDDRIRSKIIPSNKKIGVKNLIAAAREYFETTRRDISFEYLLIDGVNASRQDAESLARLLKGMQCNINVLPVNPVEEFHWRPPSRETIETFCRMLENHGLVVTLRKKKGSHINAACGQLRLQRQKFLWKNQEHCVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTE4</accession>
    <name>A0A0M2UTE4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">SirA-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03045</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sulfur carrier protein TusA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000283">
        <property type="protein sequence ID" value="KKO18256.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18256">
        <property type="protein sequence ID" value="KKO18256"/>
        <property type="gene ID" value="BROFUL_03045"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.110.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001455">
        <property type="entry name" value="TusA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036868">
        <property type="entry name" value="TusA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01206">
        <property type="entry name" value="TusA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64307">
        <property type="entry name" value="SSF64307"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UPF0033" evidence="2">
        <location>
            <begin position="2"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18256.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="65" mass="7331" checksum="8052541F8989548C" modified="2015-11-11" version="1">MNLKATVCSDNYAKAKLAFAAMKHGQGLKVVVDYEVAVTDLTKAMRSEEYKVLKQTRNNRNKLIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTF2</accession>
    <name>A0A0M2UTF2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02396</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000229">
        <property type="protein sequence ID" value="KKO18895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18895">
        <property type="protein sequence ID" value="KKO18895"/>
        <property type="gene ID" value="BROFUL_02396"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="61" mass="6752" checksum="4A5D6B5E4B10D6D4" modified="2015-11-11" version="1">MSSESAVDETTDKSQALQLMEFLNVDNLPAISKDKRFAGIVNRSRLTASLIIDVAKQLKKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTF4</accession>
    <name>A0A0M2UTF4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">TPR_21 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02998</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18271">
        <property type="protein sequence ID" value="KKO18271"/>
        <property type="gene ID" value="BROFUL_02998"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018704">
        <property type="entry name" value="TPR_21"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09976">
        <property type="entry name" value="TPR_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13174">
        <property type="entry name" value="TPR_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0143">Chaperone</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0802">TPR repeat</keyword>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="104"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="domain" description="TPR_21" evidence="3">
        <location>
            <begin position="162"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="252"/>
            <end position="285"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF09976"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18271.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="306" mass="35357" checksum="6F369A20173C0B81" modified="2015-11-11" version="1">MAEQGFYHKAIDIYSKIIREHAENESGTAVDAQFRMAKTCMQMGDYRAAIPLFLKVRWKHFSEQTRLAIEYYIGNCLYLLNEYQDAGNVMANYLASGQGLEFAEDAGFLLGECLYRQNNYIGAFQIFRKTIEDYPKSNKIPYGMYYMGKCLMAMNMAKSAIKVFYDGIQSYSADVYAAKMALEIGKCYFDKEDYWLAYNAFGAFVKEYPNDEFAFEGMLGIADSLFHDKKYEEAINNYYGLLKMVNDGQIKRYVFNRIGECYKHLGKLEDAIKAYRQSLDNDENANQLNLRRDDSLGFATSNLQHM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTH9</accession>
    <name>A0A0M2UTH9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DDE_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02378</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000227">
        <property type="protein sequence ID" value="KKO18920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18920">
        <property type="protein sequence ID" value="KKO18920"/>
        <property type="gene ID" value="BROFUL_02378"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038717">
        <property type="entry name" value="Tc1-like_DDE_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13358">
        <property type="entry name" value="DDE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0814">Transposable element</keyword>
    <feature type="domain" description="DDE_3" evidence="2">
        <location>
            <begin position="11"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="39" mass="4583" checksum="6FBEE3BF0B209D24" modified="2015-11-11" version="1" fragment="single">VLGVKRAERMLARVEFHYTPKHASWLNMAEIEIGVMDRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTP1</accession>
    <name>A0A0M2UTP1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Carbamoyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01853</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the NodU/CmcH family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000191">
        <property type="protein sequence ID" value="KKO19438.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19438">
        <property type="protein sequence ID" value="KKO19438"/>
        <property type="gene ID" value="BROFUL_01853"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2307"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.870.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031730">
        <property type="entry name" value="Carbam_trans_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038152">
        <property type="entry name" value="Carbam_trans_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003696">
        <property type="entry name" value="Carbtransf_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16861">
        <property type="entry name" value="Carbam_trans_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02543">
        <property type="entry name" value="Carbam_trans_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Carbam_trans_N" evidence="2">
        <location>
            <begin position="12"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="domain" description="Carbam_trans_C" evidence="3">
        <location>
            <begin position="293"/>
            <end position="482"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006129"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02543"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16861"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19438.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="501" mass="57173" checksum="6FCBED4FF54926DF" modified="2015-11-11" version="1">MKEFIKKELDFAGKIIFPEHHESHAASAFFPSPFQEAAVLTLDGVGEWATTSYGIGKDNKIDILAEIHFPHSLGLLYSAFTYYTGFKVNSGEYKVMGLAPYGEPKYKGIILSELMDLKEDGSFKLNMKYFNYCAGLTMTNKRFDKLFGGPPRKPESLLTQREMDLARSVQEVTEEVMMRVTRHVYKETGQKNLCMAGGVALNCVGNGKIVREGPFENIWIQPSAGDAGGALGAAMFVWYQYLENKRTADNKKDFQRGSYLGPEYEDKSISDYLRKNKIPFTEISNEDIPEKIADLIAEQKVIGWFQGRMEFGPRALGSRSIIGDARSPKMQEVMNLKTKFRESFRPFAPSVIKERVSDFFEFDKESPYMLLVAPVKKEIRREMSEEEVKLFGIDKLNVVRSSIPAVTHIDYSARIQTVDKDVNPLFYRTIAAFDKKYGCPVIINTSFNVRGEPIVCTPEDAYLCFMRTNMDYLILGNFLIEKKEQKPLDKDIDWLKKYELD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTT1</accession>
    <name>A0A0M2UTT1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8">3-deoxy-D-manno-octulosonic acid transferase</fullName>
            <shortName evidence="8">Kdo transferase</shortName>
            <ecNumber evidence="3 8">2.4.99.12</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6 8">Lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_01812</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP-Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>CMP-3-deoxy-beta-D-manno-octulosonate + lipid IVA (E. coli) = alpha-Kdo-(2-&gt;6)-lipid IVA + CMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:28066"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58603"/>
            <dbReference type="ChEBI" id="CHEBI:60364"/>
            <dbReference type="ChEBI" id="CHEBI:60377"/>
            <dbReference type="ChEBI" id="CHEBI:85987"/>
            <dbReference type="EC" id="2.4.99.12"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Bacterial outer membrane biogenesis; LPS core biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the glycosyltransferase group 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.99.12" evidence="3 8"/>
    <dbReference type="EMBL" id="LAQJ01000189">
        <property type="protein sequence ID" value="KKO19473.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19473">
        <property type="protein sequence ID" value="KKO19473"/>
        <property type="gene ID" value="BROFUL_01812"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00958"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043842">
        <property type="term" value="F:Kdo transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009244">
        <property type="term" value="P:lipopolysaccharide core region biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11720">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007507">
        <property type="entry name" value="Glycos_transf_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038107">
        <property type="entry name" value="Glycos_transf_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039901">
        <property type="entry name" value="Kdotransferase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42755">
        <property type="entry name" value="PTHR42755"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04413">
        <property type="entry name" value="Glycos_transf_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0448">Lipopolysaccharide biosynthesis</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glycos_transf_N" evidence="9">
        <location>
            <begin position="2"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="7">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="7">
        <location>
            <position position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000183"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004713"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012621"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00019077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00031445"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR639901-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU365103"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF04413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19473.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="376" mass="42478" checksum="B46D534082E8E6F6" modified="2015-11-11" version="1">MVKTLVKALEKEFNDLDIVVSTNTNTGLSVAKRCFDDRKVFYFPLDLSWVVNKALNAIQPCCVILVELEIWPNFLISAAKRSIPVVLLNARISERSLKWYRVLRKISKEFFASLTKKENFFCARTEADASRLMNLGIPEAQIGITGNMKFDNVVTDIPKDTRKSLSSLFEIDKEEKVIVCGSTHEGEEIVLLNVFQRLREKGKNVRLIVAPRHIERVNEIVKLIESFQFRCIRKTSLDNGEKVDRPKGETVILVDTVGDLQATYSIADCVFVGKSLVPHGGQNMMEPAGLAKPVIVGPHTFNFCEEVQLLKKANAIEVVRDESELLQKMMYFLEHPDVAHAIGERAQSVAMKQKGATDRNVQMLRKILSKERTVSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTT5</accession>
    <name>A0A0M2UTT5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative metal-dependent hydrolase YfiT</fullName>
            <ecNumber evidence="2">3.-.-.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">yfiT</name>
        <name evidence="2" type="ORF">BROFUL_03437</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.-.-.-" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000313">
        <property type="protein sequence ID" value="KKO17889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17889">
        <property type="protein sequence ID" value="KKO17889"/>
        <property type="gene ID" value="BROFUL_03437"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024775">
        <property type="entry name" value="DinB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034660">
        <property type="entry name" value="DinB/YfiT-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12867">
        <property type="entry name" value="DinB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109854">
        <property type="entry name" value="SSF109854"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DinB_2" evidence="1">
        <location>
            <begin position="20"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12867"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO17889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="162" mass="18951" checksum="F0660B4261F35BCD" modified="2015-11-11" version="1">MTQEERIQKIESYGKGHLQLTEALKQFPKTMWSFKPSPDRWSIHEIIIHIADSEANAYVKCRKLIAEPGKSIAAYDQDKWSAALHYRDQNTEEALELFRRLRLSSYALIKALPESVWSDSVGSMENETATLDNWLEVYEQHIPGHISQMKKRFAEWQKKRSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTV4</accession>
    <name>A0A0M2UTV4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 4">Orotate phosphoribosyltransferase</fullName>
            <shortName evidence="4">OPRT</shortName>
            <shortName evidence="4">OPRTase</shortName>
            <ecNumber evidence="2 4">2.4.2.10</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">pyrE</name>
        <name evidence="6" type="ORF">BROFUL_02221</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>diphosphate + orotidine 5'-phosphate = 5-phospho-alpha-D-ribose 1-diphosphate + orotate</text>
            <dbReference type="Rhea" id="RHEA:10380"/>
            <dbReference type="ChEBI" id="CHEBI:30839"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57538"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="EC" id="2.4.2.10"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1 4">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; UMP from orotate: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrE subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.10" evidence="2 4"/>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19040">
        <property type="protein sequence ID" value="KKO19040"/>
        <property type="gene ID" value="BROFUL_02221"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2773"/>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00119"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004588">
        <property type="term" value="F:orotate phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01208">
        <property type="entry name" value="PyrE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023031">
        <property type="entry name" value="OPRT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004467">
        <property type="entry name" value="Or_phspho_trans_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00336">
        <property type="entry name" value="pyrE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 4" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pribosyltran" evidence="5">
        <location>
            <begin position="93"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="region of interest" description="5-phosphoribose 1-diphosphate binding" evidence="4">
        <location>
            <begin position="124"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="98"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="99"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="102"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="128"/>
        </location>
        <ligand>
            <name>orotate</name>
            <dbReference type="ChEBI" id="CHEBI:30839"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="156"/>
        </location>
        <ligand>
            <name>orotate</name>
            <dbReference type="ChEBI" id="CHEBI:30839"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01208"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="187" mass="21173" checksum="8BF13042349A570C" modified="2015-11-11" version="1">MKAEKRLLEILLQKSFKYSEEPVFKLVSGRMSNYYINCKTTTLDPEAMLLIGHLFYQKVKPFHIHAIGGLTLGADPIAFATAMVSGMQDDAINAFVVRKKAKEHGLMKWIEGNVREGDRVVIVDDVVTTGQSTIDAIDRARESNLHVMKAIALVDRQEGGRENIERKEIPFEAVFTREDLMSLYKRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU10</accession>
    <name>A0A0M2UU10_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03336</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000306">
        <property type="protein sequence ID" value="KKO17964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17964">
        <property type="protein sequence ID" value="KKO17964"/>
        <property type="gene ID" value="BROFUL_03336"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001117">
        <property type="entry name" value="Cu-oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045087">
        <property type="entry name" value="Cu-oxidase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011707">
        <property type="entry name" value="Cu-oxidase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11709">
        <property type="entry name" value="PTHR11709"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00394">
        <property type="entry name" value="Cu-oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07732">
        <property type="entry name" value="Cu-oxidase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49503">
        <property type="entry name" value="SSF49503"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Plastocyanin-like" evidence="2">
        <location>
            <begin position="112"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="domain" description="Plastocyanin-like" evidence="1">
        <location>
            <begin position="298"/>
            <end position="359"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00394"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO17964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="413" mass="46711" checksum="D23AABC29859CE42" modified="2015-11-11" version="1">MAVISDTKEHLTGIFIARCMLKKYVAGSFLIAILCCPPVIASPEEVLIPGDQIVEKAFTEFSKDGQVEREFHLYATDGYQEMADGELIYFWGFAHAKDFADAGEVKTKEERDTKLLPLTVPGDEIRLTSGKNYVVVLHNAGFYETEMHSGVHGVPHTIHFHGLDLIPAYDGVPNMPYTPVFPGEKYRYLLTIPEDVEGSYLGHCHVDTTNHLMAGMYFPLILEKRPNEIYGYPFDREYTLIMSEVDSDYMEMLRTEGSIRRGLEWKSNYFMLNGRIFMDILTNPLSTINDPKTRIVAYEGETVLIRLIAIGYNHIFAWHPHGFHGLVIGTDGRKLSYPYEKDTLLIGSGERYDILYKIPDLSAKRGCPSCNYGHGISIAHDHNMMGMVSRGIYPHGPQTIFDVRPKNTKPGTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU83</accession>
    <name>A0A0M2UU83_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transketolase pyridine binding subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02138</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19155">
        <property type="protein sequence ID" value="KKO19155"/>
        <property type="gene ID" value="BROFUL_02138"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005475">
        <property type="entry name" value="Transketolase-like_Pyr-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02779">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00861">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transket_pyr" evidence="1">
        <location>
            <begin position="1"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00861"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="171" mass="18733" checksum="FCFF3AF43C6D6E1F" modified="2015-11-11" version="1">MRKAFADTLTQIAEQNSRVVLVTGDLGFQVFDEFHARFGPRYINVGVAEAQMIYAAAGLATVGWRPVTYSIASFATARPFEQIRYCVSYPNLPVVIVGAGRGYLYSTSGVSHHAADDLALMSVLPGMTVVAPGDPDEVVQLFPQLFNLPGPSYFTVGRFGEHRMKPLNQQF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU96</accession>
    <name>A0A0M2UU96_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">GTP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_02153</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19170.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19170">
        <property type="protein sequence ID" value="KKO19170"/>
        <property type="gene ID" value="BROFUL_02153"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2687"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11060">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032305">
        <property type="entry name" value="GTP-bd_M"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016496">
        <property type="entry name" value="GTPase_HflX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025121">
        <property type="entry name" value="GTPase_HflX_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042108">
        <property type="entry name" value="GTPase_HflX_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10229">
        <property type="entry name" value="PTHR10229"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16360">
        <property type="entry name" value="GTP-bdg_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13167">
        <property type="entry name" value="GTP-bdg_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GTP-bdg_N" evidence="4">
        <location>
            <begin position="31"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="domain" description="GTP-bdg_M" evidence="5">
        <location>
            <begin position="120"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF16360"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19170.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="173" mass="19580" checksum="CF4376413C94EAC8" modified="2015-11-11" version="1">MKLKETAFTVRAERAILFRVMLSGEQHENEAPLEELRRLATTAGANVIHTVVQKRPQIDPVYYIGKGKAGELSGLSKDFHADVLICDDDLTPAQVRNLEKVIEKKVIDRSELILDIFATRAKTFQAKLQVELAQLEYTRPRLKRMWTHLSRIEGGIGTRGPVKNNWKSISALC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUP8</accession>
    <name>A0A0M2UUP8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01944</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000199">
        <property type="protein sequence ID" value="KKO19345.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19345">
        <property type="protein sequence ID" value="KKO19345"/>
        <property type="gene ID" value="BROFUL_01944"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19345.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="63" mass="7724" checksum="E947101962EACDF9" modified="2015-11-11" version="1">MVLGKARWFDLLRSTELLKLMRSTDQFRFEVEALEKGSWIVVDEYFRLWWRIVLLEDSQSDRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUQ5</accession>
    <name>A0A0M2UUQ5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Cysteine--tRNA ligase</fullName>
            <ecNumber evidence="11">6.1.1.16</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">Cysteinyl-tRNA synthetase</fullName>
            <shortName evidence="11">CysRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">cysS</name>
        <name evidence="13" type="ORF">BROFUL_01748</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>ATP + L-cysteine + tRNA(Cys) = AMP + diphosphate + L-cysteinyl-tRNA(Cys)</text>
            <dbReference type="Rhea" id="RHEA:17773"/>
            <dbReference type="Rhea" id="RHEA-COMP:9661"/>
            <dbReference type="Rhea" id="RHEA-COMP:9679"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:35235"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78517"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.16"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="11">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 11">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the class-I aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.16" evidence="11"/>
    <dbReference type="EMBL" id="LAQJ01000181">
        <property type="protein sequence ID" value="KKO19547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19547">
        <property type="protein sequence ID" value="KKO19547"/>
        <property type="gene ID" value="BROFUL_01748"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2165"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004817">
        <property type="term" value="F:cysteine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006423">
        <property type="term" value="P:cysteinyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00672">
        <property type="entry name" value="CysRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00041">
        <property type="entry name" value="Cys_tRNA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015803">
        <property type="entry name" value="Cys-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015273">
        <property type="entry name" value="Cys-tRNA-synt_Ia_DALR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024909">
        <property type="entry name" value="Cys-tRNA/MSH_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032678">
        <property type="entry name" value="tRNA-synt_1_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10890">
        <property type="entry name" value="PTHR10890"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09190">
        <property type="entry name" value="DALR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01406">
        <property type="entry name" value="tRNA-synt_1e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00983">
        <property type="entry name" value="TRNASYNTHCYS"/>
    </dbReference>
    <dbReference type="SMART" id="SM00840">
        <property type="entry name" value="DALR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="SSF47323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00435">
        <property type="entry name" value="cysS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="8 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9 11" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 11" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="DALR_2" evidence="12">
        <location>
            <begin position="363"/>
            <end position="429"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="11">
        <location>
            <begin position="31"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="11">
        <location>
            <begin position="277"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="29"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="220"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="245"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="249"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="280"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00041"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM00840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO19547.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="497" mass="56913" checksum="2A65733F2C16BF1C" modified="2015-11-11" version="1">MTLKFYNSLTKKKEVFTPVHEGLVNMYVCGPTVYDHPHIGHAKSYVSFDVIVRYLRYLGYKVRYVQNITDVGHLTDNADTGEDKILKRAQRERLQPAELVEIYTRSYFDDMDALNNVRPDISPRATAHIPEQIELVEKLIEKEYAYASNGSVYFDVNKFKEYGKLSGRIQDDLEAGARIEINPEKRNPADFALWKKAEPGHIMRWKSPWGEGFPGWHLECSAMSMKYLGQTLDIHGGGLENIFPHHECEIAQSEAANRAPFVKYWIHNNMVTVNGQKMGKSLGNFITLKDAFKKYNPLTVRFFILNTHYRSPLDFSNEALDAADKGLERLHNTIKNLWERIDSVKDAPSSDTAYERLEHFKKAFIEAMDEDINTSSAVAVLFDLSKEVNTLLNSGREISKKCLEDINALYQQLGGDILGIIPKRSDRSAKTSGIMLTHGWQAQDSITDEIMKVLIDIRNELRKAKQWQLSDFIRNKLSEIGIVLDDKPDSTTWKRAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUS5</accession>
    <name>A0A0M2UUS5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01495</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000154">
        <property type="protein sequence ID" value="KKO19793.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19793">
        <property type="protein sequence ID" value="KKO19793"/>
        <property type="gene ID" value="BROFUL_01495"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002560">
        <property type="entry name" value="Transposase_DDE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032877">
        <property type="entry name" value="Transposase_HTH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01610">
        <property type="entry name" value="DDE_Tnp_ISL3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13542">
        <property type="entry name" value="HTH_Tnp_ISL3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH_Tnp_ISL3" evidence="2">
        <location>
            <begin position="2"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="domain" description="DDE_Tnp_ISL3" evidence="1">
        <location>
            <begin position="61"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01610"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19793.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="144" mass="16890" checksum="1D4EA23B49A8FF04" modified="2015-11-11" version="1" fragment="single">FQPYSRVTHRLAAYIHELCKVLTVTEVAKHFGINWKTVKTIDKFFLERQYAQTDYQNLRILAVDEISVKKGQRYLTVVLDYLSGRVVWVGKERTKETLGTFFAGMTEEQRQALEAIAMDMWDPYIHAVKKHVPHVKIVFYLTSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUU9</accession>
    <name>A0A0M2UUU9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02991</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18264.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18264">
        <property type="protein sequence ID" value="KKO18264"/>
        <property type="gene ID" value="BROFUL_02991"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18264.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="68" mass="7984" checksum="E96893F435CEB61E" modified="2015-11-11" version="1" fragment="single">LIRRYRLFIREGLLRSARNDNVPYVIKGIARVIARVLSEAISRFHNGKLVAAVLRYVIIPKYICDEKW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUY8</accession>
    <name>A0A0M2UUY8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02467</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18806.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18806">
        <property type="protein sequence ID" value="KKO18806"/>
        <property type="gene ID" value="BROFUL_02467"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644198" evidence="1">
        <location>
            <begin position="23"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18806.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="272" mass="32021" checksum="8FEAFBC5AC29DB58" modified="2015-11-11" version="1">MKLLFPLVAVFCIIFLPTSSFAAERGNGLSKSDHTIYTLGEQALRNLDRQHDADLLRECMGFYIDNQQFDNPEGSYNKAIRIGYQILNIDRKDIDTYTTMAWLLWSKWVSWTINPTRMPDGEGKADQAVELLNWGKQWNLKSERFYKESADTIWPLAKHYRTDLYGFVIENYRKADLLAKSNDLARVRIRLNLGHAYRQINEKKTLSPGTRGFWKLFRRMRSRSIISLAWKMNRRRRLSTKRTKTTLPGDFQTTQPIHAYCSRLSEMHLCRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV25</accession>
    <name>A0A0M2UV25_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01378</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000142">
        <property type="protein sequence ID" value="KKO19903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19903">
        <property type="protein sequence ID" value="KKO19903"/>
        <property type="gene ID" value="BROFUL_01378"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="53" mass="6211" checksum="8B7B0B2DE046C2E8" modified="2015-11-11" version="1">MHTLHDIRVDNYAYGKLRIRYLPLHVKLLKSQSSFQKKFAMYSDDLIALTSAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV31</accession>
    <name>A0A0M2UV31_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">ABC transporter permease component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_01594</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19662.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19662">
        <property type="protein sequence ID" value="KKO19662"/>
        <property type="gene ID" value="BROFUL_01594"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1973"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003838">
        <property type="entry name" value="ABC3_permease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025857">
        <property type="entry name" value="MacB_PCD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02687">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12704">
        <property type="entry name" value="MacB_PCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="256"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="301"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="347"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="domain" description="MacB_PCD" evidence="8">
        <location>
            <begin position="19"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="domain" description="FtsX" evidence="7">
        <location>
            <begin position="286"/>
            <end position="380"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF12704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19662.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="388" mass="42834" checksum="474CD5A0279E5530" modified="2015-11-11" version="1">MRIPFLYSFRNLLTRRLTTTLTASGMALVVFVFASILMLAEGLRKTLVNTGSYDNVVVIRKAAASEVQSGIDRQQASIVETQTEVAFGAEGRRLLAKELVVLINLPKRGSNKPSNVVIRGISESSLSLRPQVRLAEGRMPRTGSSEIIAGQSIAKRFKGGGIGETLRFGMRDWTVVGVLDAGNTGFNSEIWGDVDQLMQAFRRPVYSSVLFRLRDSSEFVKFKTRTESDPRLTVEAKREVTYYEDQSKMMAKFLRIMGLSLTIIFSLGAIIGAMVTMYSAVANRTKEIGTLRALGFQRRNIVGAFLMESLMIGWLGGCAGLFCASFMQLLTISTMNFQTFSELAFTFSLTFGIIYKSLLFSLIMGFLGGVLPAFRSARMNIVDALRAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV40</accession>
    <name>A0A0M2UV40_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01604</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19672">
        <property type="protein sequence ID" value="KKO19672"/>
        <property type="gene ID" value="BROFUL_01604"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0110001">
        <property type="term" value="C:toxin-antitoxin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008201">
        <property type="entry name" value="HepT-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01934">
        <property type="entry name" value="DUF86"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-1277">Toxin-antitoxin system</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="71" mass="8557" checksum="3E53091287A3F583" modified="2015-11-11" version="1">MQPEDRDAAYRWGMLDYAHTILKFTSRLNYTSYLMDRKLQLAVERRIEIIGESAKMSRRHLRKNIPKFRGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVA1</accession>
    <name>A0A0M2UVA1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative thioredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01543</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000160">
        <property type="protein sequence ID" value="KKO19742.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19742">
        <property type="protein sequence ID" value="KKO19742"/>
        <property type="gene ID" value="BROFUL_01543"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016209">
        <property type="term" value="F:antioxidant activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000866">
        <property type="entry name" value="AhpC/TSA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00578">
        <property type="entry name" value="AhpC-TSA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="85"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="domain" description="Thioredoxin" evidence="2">
        <location>
            <begin position="168"/>
            <end position="310"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19742.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="315" mass="36046" checksum="920282E095E5026D" modified="2015-11-11" version="1">MVIMRKRTRLIFSALTSVFLLWAGYTVNAGSLKHDPNAEKQLEIIRKKLGSLTEMKIKDAKKYYEESMKDLRTLIDTYDKTEEALEAQFYLGAVYHEMNNYKDAVTCFDAVLKQGTIDKNFKARTLYFKAKALIGQGNITAAKETISELRLIEPRAADSFGHELGGMVRLGMDAPLFNVMDFQGNTVDLSKYKGGIVILHFWATWADTCIQEFPKFKKMYGAFKNKSVQFIGISLDDDIEDLKGFAKQESIDWPQIFDGKRWKGMIPSLYNIHMLPTIVVLDQEQKVRYIGMETENVSQIVTNLLSQSKDLPLFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVB8</accession>
    <name>A0A0M2UVB8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02858</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000269">
        <property type="protein sequence ID" value="KKO18449.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18449">
        <property type="protein sequence ID" value="KKO18449"/>
        <property type="gene ID" value="BROFUL_02858"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3536"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000412">
        <property type="entry name" value="ABC_2_transport"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51012">
        <property type="entry name" value="ABC_TM2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="15"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="220"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="256"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="283"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="342"/>
            <end position="366"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18449.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="374" mass="41577" checksum="A94A150D3C42F26E" modified="2015-11-11" version="1">MRSLLNILWLGLKEIASLLSDIVMVIFLCYAFTMAIYVQATGTSTQVNNASIAFVDEDGSALSKELFNAFLPPYFQNPRYIEAREVEDAMDRGEFMFVVAIPTLFELDLRAGRNPDVQVNVDATAMKQAGIGADYIKNIINQRIATFLKRTDEKAREPVNLIVRRMFNPNGISSWFTSIVAIINQVTLLTVVLTGAAVIREREHGTLEHLLVMPLSAFEIAMAKVWANGLMILIATGFSLFLIVKAVLQVPFAGSIPLWFCGVVLYLFYTTALGIFLGTISRSMAQFALLIVLVVVLMQLLSGGTTPIESQPRWLQYITFFLPTRHFVSFSQVIIYRGGGLSAVWLQFLVVSAIGLAFFAYSLVLFRKSIAVTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVE7</accession>
    <name>A0A0M2UVE7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">PpiC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02831</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000266">
        <property type="protein sequence ID" value="KKO18474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18474">
        <property type="protein sequence ID" value="KKO18474"/>
        <property type="gene ID" value="BROFUL_02831"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046357">
        <property type="entry name" value="PPIase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000297">
        <property type="entry name" value="PPIase_PpiC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023058">
        <property type="entry name" value="PPIase_PpiC_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027304">
        <property type="entry name" value="Trigger_fact/SurA_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109998">
        <property type="entry name" value="SSF109998"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01096">
        <property type="entry name" value="PPIC_PPIASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50198">
        <property type="entry name" value="PPIC_PPIASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0697">Rotamase</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5007777993" description="PpiC domain-containing protein" evidence="3">
        <location>
            <begin position="22"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="domain" description="PpiC" evidence="4">
        <location>
            <begin position="225"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="64"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="369" mass="40834" checksum="89DEFBB00846C519" modified="2015-11-11" version="1">MVKGIALFSVFAIFVAFSLCGCQRNESGSSQASNESAEQDFAKIHQNVNFNKEDKEKMHSLGMAAEENGSGGHGMGSVHGKKEKADPNKVIATVNNEKILRKDLDKILDRFKNHVNPATISSMEEQITDQLVTQSLLRQFVVEKKLSVPAEVVDKEIAKMRDNIKNNPATKDKTLEQFLEFQGSNIEELKTAINMSAAIENYVSKGIDEKKLEDYFMKNISNFNGETVTASHILVDTKGKKTPEEIEGARAKIASIKKELDEGADFAELAKKYSDCPTGKTGGELGSFPRHGVMVEEFAKAAFATEVGKVSDPVKTEFGYHLIKVTAKTPPKDVSFSQVKDRVREELVALEMNNTIKDLREKAKIEITL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVF1</accession>
    <name>A0A0M2UVF1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01731</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000180">
        <property type="protein sequence ID" value="KKO19560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19560">
        <property type="protein sequence ID" value="KKO19560"/>
        <property type="gene ID" value="BROFUL_01731"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="136" mass="14872" checksum="48D766CC0D8C47CF" modified="2015-11-11" version="1">MVAQSPTALGTFREPFIGELNLTGREVWIRAAEVYNGIAIPVDATGFQIGLEDAAGVVSFVPSGALPRPFDREAADLAKFGVNLTKTMLKTVRFPANCFTHARPSLDLTRIRAAIIRLNRPDARDFAFDQLQIVTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVG8</accession>
    <name>A0A0M2UVG8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Y1_Tnp domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01229</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000134">
        <property type="protein sequence ID" value="KKO20053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20053">
        <property type="protein sequence ID" value="KKO20053"/>
        <property type="gene ID" value="BROFUL_01229"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1290">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002686">
        <property type="entry name" value="Transposase_17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036515">
        <property type="entry name" value="Transposase_17_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01797">
        <property type="entry name" value="Y1_Tnp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01321">
        <property type="entry name" value="Y1_Tnp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143422">
        <property type="entry name" value="SSF143422"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Y1_Tnp" evidence="1">
        <location>
            <begin position="11"/>
            <end position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="89" mass="10670" checksum="DA851E8B20C8AF00" modified="2015-11-11" version="1">MYMPRIARVVVPEVPHHVTQRGNRRLQTFFCDDDYEAYIDLMCQWCTHWNVEVWAYCLMSNHVHLIAVRLLKRRLVRKLAMRIGATRVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVI3</accession>
    <name>A0A0M2UVI3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Diguanylate cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01444</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000147">
        <property type="protein sequence ID" value="KKO19842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19842">
        <property type="protein sequence ID" value="KKO19842"/>
        <property type="gene ID" value="BROFUL_01444"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013656">
        <property type="entry name" value="PAS_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08448">
        <property type="entry name" value="PAS_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PAS" evidence="1">
        <location>
            <begin position="4"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="2">
        <location>
            <begin position="170"/>
            <end position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="299" mass="33133" checksum="52F3784B48BD72F8" modified="2015-11-11" version="1">MIAESDIHKNLLDSLSGGICAINRDRVITYWNKNTTTLTGYMHSETVGKCCRDDILMYVDEQGKGVCENECMALGAMADGAPRSMEVYAHHKDGYRVPVLVRILPLKNLEGQVIGAIEELHDNSSKAEYVHKTEELEKRALLDPQTGLMKRRGLEMNLRTMFSVMQRYGWSYGIFLVDIDGLKRINDLHGPKTGDAVVKMVTKTLLNSVRASDMVGRWGGDEFMVIAMNVTENHLRIIANKIHALIEQSGFFVGTDAIRVTVSVSGTVAQSSDTVDALLKRLNHLMSQGKSSGKNCISV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVJ5</accession>
    <name>A0A0M2UVJ5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01702</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000176">
        <property type="protein sequence ID" value="KKO19595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19595">
        <property type="protein sequence ID" value="KKO19595"/>
        <property type="gene ID" value="BROFUL_01702"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008969">
        <property type="entry name" value="CarboxyPept-like_regulatory"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49464">
        <property type="entry name" value="SSF49464"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644212" evidence="1">
        <location>
            <begin position="22"/>
            <end position="241"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="241" mass="26724" checksum="97FD111F4703E90E" modified="2015-11-11" version="1">MMRKICVSVMALFCVVKTLYAFETGTLRGRVIDGFGKPVPSAAIEALSDGSKSKTTSDAAGVFSVNYNPGNIKLTFAKDGYVPAYIPFSLDEKTDLSVDDITLWKIPPRGGLFVVGEGDYIEIKKAEYYFESSSKERRFYVRGSPTVIKGQALRIIDFQVDNPLVIGKTLYQVDAKDSVGSIIFYPSQKYVLNKEDDSYSKIADNMGIRKVNLPPGRYFYCTGEITIRSKVGNGFLFEVTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVP8</accession>
    <name>A0A0M2UVP8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01675</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19640">
        <property type="protein sequence ID" value="KKO19640"/>
        <property type="gene ID" value="BROFUL_01675"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007487">
        <property type="entry name" value="ABC_transpt-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35271">
        <property type="entry name" value="PTHR35271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04392">
        <property type="entry name" value="ABC_sub_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="279" mass="31180" checksum="09632B003ED67CB3" modified="2015-11-11" version="1">MNQKFIQFERHPGVLLIGWVALALLFQTISFVPPLFAAENTVIIFRSQQIAAYNEAIQGFEEGCEGKNIKIKTIYDLHGDTEEARRIIQMVKETTPKPNAILTVGVLAATLVKEHFPGIPIIFCMVINHDRFNLQGTNITGISSEASIEDQFAVLQEILGPHKNIGVIYDPSKTRKMVAQATVVAKQFDFNLVKTEVIQEKEVESALKNITNKIDALWVIPDSTVITQNTLKTIPRIIREHRLPIFSTSDAIVKAGALIAVSPNYRYTGIQPLSLHKCY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVQ2</accession>
    <name>A0A0M2UVQ2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02706</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000251">
        <property type="protein sequence ID" value="KKO18589.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18589">
        <property type="protein sequence ID" value="KKO18589"/>
        <property type="gene ID" value="BROFUL_02706"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3347"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021320">
        <property type="entry name" value="DUF2905"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36443">
        <property type="entry name" value="PTHR36443"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11146">
        <property type="entry name" value="DUF2905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18589.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="74" mass="8167" checksum="FAB8A6DFF6BF231B" modified="2015-11-11" version="1">MAELGAFGKILIGLGIILIIIGGLFVAGDKIPFLGRLPGDIAIQKKNFSFYFPITTCIVISIIFSLIMWLLRKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVX4</accession>
    <name>A0A0M2UVX4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01063</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20213.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20213">
        <property type="protein sequence ID" value="KKO20213"/>
        <property type="gene ID" value="BROFUL_01063"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018391">
        <property type="entry name" value="PQQ_beta_propeller_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002372">
        <property type="entry name" value="PQQ_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011047">
        <property type="entry name" value="Quinoprotein_ADH-like_supfam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13360">
        <property type="entry name" value="PQQ_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00564">
        <property type="entry name" value="PQQ"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50998">
        <property type="entry name" value="SSF50998"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20213.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="381" mass="40758" checksum="32BFCFF667768A92" modified="2015-11-11" version="1">MNCKRSFSSVLNPLFYPITIAVMLWSARPDASVSAQEARNAFPMFRYTSERTGRVPFAGPAEGNLKWSISSAGEIWSSPVVDANGVIYIGSTDGNLLSITSNGKVLWAFKSGDEIFGSPAIGTNGVVYFGSVSGRMYAINPDGKTKWKFQAAGAIHSSPAVGENETVYFSSYDGKLYAVSANGKLLWSYKTEAAIMLSSPAIGKDNTIYIGSWDKHLHALNQDGSLKWRLETESKIDSTPAVCDGIVYVVDTNGKLYSVNSDGTLQWACGLGSRSHSSPAVGADGTVYVGAQDGNLYAIAKDGALKWKFKTEKSITASPVVDANGTIYIGSWDGNLYAIHADGTLKWNVKIGDALISSPAIGAMNVLYVGCVDWKLYAIGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW05</accession>
    <name>A0A0M2UW05_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">CTP pyrophosphohydrolase</fullName>
            <ecNumber evidence="4">3.6.1.65</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">nudG</name>
        <name evidence="4" type="ORF">BROFUL_01094</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the Nudix hydrolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.65" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20243.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20243">
        <property type="protein sequence ID" value="KKO20243"/>
        <property type="gene ID" value="BROFUL_01094"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1361"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020476">
        <property type="entry name" value="Nudix_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00502">
        <property type="entry name" value="NUDIXFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="3">
        <location>
            <begin position="1"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003476"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20243.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="109" mass="12393" checksum="C4EF8698D011D457" modified="2015-11-11" version="1">MSLPLKWEFPGGKIHNGESFPECLKRELQEELGIEAAVGHPLLPATHNYPTFSVTLHPFVCKIISGEITLHEHVALAWLTPQELPTLDWAEADIPVIESYREFIKTHQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW29</accession>
    <name>A0A0M2UW29_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Y1_Tnp domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01228</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000134">
        <property type="protein sequence ID" value="KKO20052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20052">
        <property type="protein sequence ID" value="KKO20052"/>
        <property type="gene ID" value="BROFUL_01228"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1520"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1290">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002686">
        <property type="entry name" value="Transposase_17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036515">
        <property type="entry name" value="Transposase_17_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01797">
        <property type="entry name" value="Y1_Tnp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01321">
        <property type="entry name" value="Y1_Tnp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143422">
        <property type="entry name" value="SSF143422"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Y1_Tnp" evidence="1">
        <location>
            <begin position="9"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="183" mass="22296" checksum="ACA834C50E8E37BC" modified="2015-11-11" version="1">MPNYRRIRIPGISYFFTVVTYKRRKILVIPQSRQILRAVINEVRQLQPFTICGWVLLPDHIHCIWTLPENDCNYSKRWGMIKAGFSKRAKNLFHRNEWMTDSKRKYREATTWQRRFWEHMIRDEDDFRKHMDYLHFNPVKHGLVKRVKDWPYSTFHRFVKNGFYPPDWGGDELGEIADTDFGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW54</accession>
    <name>A0A0M2UW54_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Radical SAM core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01473</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000151">
        <property type="protein sequence ID" value="KKO19805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19805">
        <property type="protein sequence ID" value="KKO19805"/>
        <property type="gene ID" value="BROFUL_01473"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Radical SAM core" evidence="1">
        <location>
            <begin position="41"/>
            <end position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="370" mass="41829" checksum="F5D9611E99B7011E" modified="2015-11-11" version="1">MNIPGLAFRDREGKVVFHPRPPNNDLDQLPFPDRQDITLCQKKGIVTYIQGSRGCYGQCTFCYLNSFYGEINQWRGRSAKNIFEEIFALNTRHAITNFYFSDANFFGPGKAGQERAVTLAELILSNDLEICFGFECRANDVEEYSISRLVMAGLTNVFLGLESGDQASLRRLKKHITVDENKRAIQLLRGCGIEPTFGFIMFEPYSTLESVRNNFEFLKEMNVMTTPAVTAHLLHHRQTLFQGTPDYQMMIPDSPCSGHGVLCSTYETRYTMKDQKVAAFSAVITRVCSEALSLIPTTFDCATNTPQVEKKSSALVLDSLNSILITMFEKTLLHFETSKNSPRQEIIQEMSERLTNEIKTLMKVSSLASH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWA9</accession>
    <name>A0A0M2UWA9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7 8">Translation initiation factor IF-2</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">infB</name>
        <name evidence="11" type="ORF">BROFUL_00915</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7 8">One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 8">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000110">
        <property type="protein sequence ID" value="KKO20358.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20358">
        <property type="protein sequence ID" value="KKO20358"/>
        <property type="gene ID" value="BROFUL_00915"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1154"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03702">
        <property type="entry name" value="IF2_mtIF2_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10050">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00100_B">
        <property type="entry name" value="IF_2_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044145">
        <property type="entry name" value="IF2_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006847">
        <property type="entry name" value="IF2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000178">
        <property type="entry name" value="TF_IF2_bacterial-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015760">
        <property type="entry name" value="TIF_IF2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023115">
        <property type="entry name" value="TIF_IF2_dom3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036925">
        <property type="entry name" value="TIF_IF2_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43381">
        <property type="entry name" value="PTHR43381"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11987">
        <property type="entry name" value="IF-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04760">
        <property type="entry name" value="IF2_N"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52156">
        <property type="entry name" value="SSF52156"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00487">
        <property type="entry name" value="IF-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 7" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3 7 8" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="4 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 7 8" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="10">
        <location>
            <begin position="240"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="54"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="region of interest" description="G-domain" evidence="7">
        <location>
            <begin position="243"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="61"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="249"/>
            <end position="256"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="295"/>
            <end position="299"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="349"/>
            <end position="352"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00020675"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000644"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO20358.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="742" mass="81653" checksum="932C40D976D3CC56" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWH3</accession>
    <name>A0A0M2UWH3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PKD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02452</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000232">
        <property type="protein sequence ID" value="KKO18859.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18859">
        <property type="protein sequence ID" value="KKO18859"/>
        <property type="gene ID" value="BROFUL_02452"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3048"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.115.10.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023296">
        <property type="entry name" value="Glyco_hydro_beta-prop_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000601">
        <property type="entry name" value="PKD_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035986">
        <property type="entry name" value="PKD_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49299">
        <property type="entry name" value="SSF49299"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75005">
        <property type="entry name" value="SSF75005"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50093">
        <property type="entry name" value="PKD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKD" evidence="1">
        <location>
            <begin position="340"/>
            <end position="383"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18859.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="401" mass="44520" checksum="74C58757113B556A" modified="2015-11-11" version="1">MAANYAWSFTAVSAQEEMIPDWTNVVYSPFHLVPPTTVTNPVQKGSDVTEYPADMVADTFLFYENNTWYMFNETLGSGHNGDLAVSLSSDGLHWTYQQIVLNEPFHLSYPQVFKFGGTYYMIPETSAVNEMRLYRATNFPSAWTREATLLSGSAFVDSSIFRHNGKWWIFTGNATISNCYLYYSDNLTSGWIQHPMSPIVTGDSNKTRPAGRAFVYDNNRIIRTAQNGEFVRVFEVDTLTTTQYAEHEIPESPILNKSGSGWNATGMHHFDPWWTGNHWLCSVDGRSGDFHSWSAGIYLSPHPSSPDGIINSPIDADVTIDKGDSVLFSGTGSDLGGNLPLSYRWKFSADSGIPDSLQKDPGLTQFNIAGTFTVTLTITDAVGIYDPTPAVRTISVLDTTH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWK9</accession>
    <name>A0A0M2UWK9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00833</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000104">
        <property type="protein sequence ID" value="KKO20448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20448">
        <property type="protein sequence ID" value="KKO20448"/>
        <property type="gene ID" value="BROFUL_00833"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644063" evidence="2">
        <location>
            <begin position="22"/>
            <end position="518"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="85"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="90"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="518" mass="59836" checksum="007B49AB8AF618FC" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWQ5</accession>
    <name>A0A0M2UWQ5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase</fullName>
            <ecNumber evidence="7">6.3.2.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Meso-A2pm-adding enzyme</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Meso-diaminopimelate-adding enzyme</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">UDP-MurNAc-tripeptide synthetase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">UDP-N-acetylmuramyl-tripeptide synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">murE</name>
        <name evidence="13" type="ORF">BROFUL_02332</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ATP + meso-2,6-diaminoheptanedioate + UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamate = ADP + H(+) + phosphate + UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptanedioate</text>
            <dbReference type="Rhea" id="RHEA:23676"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57791"/>
            <dbReference type="ChEBI" id="CHEBI:83900"/>
            <dbReference type="ChEBI" id="CHEBI:83905"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.13"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="7 8">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7 8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="7">Carboxylation is probably crucial for Mg(2+) binding and, consequently, for the gamma-phosphate positioning of ATP.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the MurCDEF family. MurE subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.13" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18939.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18939">
        <property type="protein sequence ID" value="KKO18939"/>
        <property type="gene ID" value="BROFUL_02332"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2897"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004326">
        <property type="term" value="F:tetrahydrofolylpolyglutamate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008765">
        <property type="term" value="F:UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00208">
        <property type="entry name" value="MurE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018109">
        <property type="entry name" value="Folylpolyglutamate_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036565">
        <property type="entry name" value="Mur-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004101">
        <property type="entry name" value="Mur_ligase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036615">
        <property type="entry name" value="Mur_ligase_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013221">
        <property type="entry name" value="Mur_ligase_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000713">
        <property type="entry name" value="Mur_ligase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035911">
        <property type="entry name" value="MurE/MurF_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005761">
        <property type="entry name" value="UDP-N-AcMur-Glu-dNH2Pim_ligase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01225">
        <property type="entry name" value="Mur_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02875">
        <property type="entry name" value="Mur_ligase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08245">
        <property type="entry name" value="Mur_ligase_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53244">
        <property type="entry name" value="SSF53244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53623">
        <property type="entry name" value="SSF53623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63418">
        <property type="entry name" value="SSF63418"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01085">
        <property type="entry name" value="murE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01011">
        <property type="entry name" value="FOLYLPOLYGLU_SYNT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7 8" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="2 7 8" id="KW-0132">Cell division</keyword>
    <keyword evidence="3 7 8" id="KW-0133">Cell shape</keyword>
    <keyword evidence="6 7 8" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0436">Ligase</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 7 8" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mur_ligase" evidence="10">
        <location>
            <begin position="14"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_M" evidence="12">
        <location>
            <begin position="99"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_C" evidence="11">
        <location>
            <begin position="320"/>
            <end position="405"/>
        </location>
    </feature>
    <feature type="region of interest" description="UDP-MurNAc-L-Ala-D-Glu binding" evidence="7">
        <location>
            <begin position="143"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="region of interest" description="Meso-diaminopimelate binding" evidence="7">
        <location>
            <begin position="395"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="473"/>
            <end position="492"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Meso-diaminopimelate recognition motif" evidence="7">
        <location>
            <begin position="395"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="21"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamate</name>
            <dbReference type="ChEBI" id="CHEBI:83900"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="101"/>
            <end position="107"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="170"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamate</name>
            <dbReference type="ChEBI" id="CHEBI:83900"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="176"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamate</name>
            <dbReference type="ChEBI" id="CHEBI:83900"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="178"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamate</name>
            <dbReference type="ChEBI" id="CHEBI:83900"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="371"/>
        </location>
        <ligand>
            <name>meso-2,6-diaminoheptanedioate</name>
            <dbReference type="ChEBI" id="CHEBI:57791"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="446"/>
        </location>
        <ligand>
            <name>meso-2,6-diaminoheptanedioate</name>
            <dbReference type="ChEBI" id="CHEBI:57791"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="450"/>
        </location>
        <ligand>
            <name>meso-2,6-diaminoheptanedioate</name>
            <dbReference type="ChEBI" id="CHEBI:57791"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-carboxylysine" evidence="7">
        <location>
            <position position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00208"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF01225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF02875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF08245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO18939.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="492" mass="54261" checksum="6028105721CA4830" modified="2015-11-11" version="1">MKECNSFDFVETEVQGITHDSRRVKKGYVFVAIKGYKVDGHDFGLQASAQGAVALVVEKKIELSSPIPQIVVTNTRYALAVMSNRFYGEPSLRMEVIGITGTNGKTTTSYFTKSIIDASGNETGLIGTIQHQIGKRVIPAQETTPESVELHRYFAEMLESGIRYAIIEVSSHALSQYRVEGVCFRSAIFTNLSVEHLDYHMHIRNYRAEKLKLFKGLSSGGIAILNADDNASKHFSECTNAQVVWYGIKKKGAEVTAEILQAGVSTTRILLNSPWGKIPIQLPLIGKHNVYNALAAAANGLALGFTLDTVKTGIELLPAVPGRLERVDCGQDYSVYVDFAHTHQALQIVLRTLREVTKGRLILVFGCGGDRDRKKRPKMGHIAGKYSDLFWITSDNPRSEDPGDIIREIQGGVKKEACFRIQADRKAAIKEAISEAKKDDVVIIAGKGHEQGQITKGVTIPFDDREVVRQTLQSSMVSESKKQNTYGSPVFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWS7</accession>
    <name>A0A0M2UWS7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF4139 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01001</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000118">
        <property type="protein sequence ID" value="KKO20292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20292">
        <property type="protein sequence ID" value="KKO20292"/>
        <property type="gene ID" value="BROFUL_01001"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1255"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037291">
        <property type="entry name" value="DUF4139"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13598">
        <property type="entry name" value="DUF4139"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644130" description="DUF4139 domain-containing protein" evidence="1">
        <location>
            <begin position="21"/>
            <end position="456"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4139" evidence="2">
        <location>
            <begin position="179"/>
            <end position="412"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="456" mass="51919" checksum="D6C30D811A235BAB" modified="2015-11-11" version="1">MKKRVLGVILFGLVLYPVLSADSKAQGKEVSVTIYQNNFGLVRDVREMELKAGVQEIRFTDVASQIDPTSVHFKSLTAPDQVAILEQNYEYDLVSAEKILQKYIDQVVQLYTKEGKIFEGKLLSAGGNVVLEKKDGGIQSIAMANVQNVDFPKLPAGLITRPTLVWYLSNEKEGRHSMETSYVTEGIGWHAEYVALVNHTDTQLDLSAWVSVNNQSGADYEHAKLKLIAGDVHRITPPSPRYMDYEVQAMAKAAPARQFEEKAFFEYHLYTLQRAATIKNNQIKQLALFPTATTPVKKIFEYDGSKNEKKVNVKLEFENTEKNGLGIPVPAGKVRVYKSDEDQSQVFIGEDQIDHTPKDEKIRLYVGDAFDVVGERKQMGYKQLSDRAREETWEIKLRNHKKEDIEVLVTEHLWGDWEIRETSHPYNKKDASTIEMVIPVKKDAEAIVKYTVLYRW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWZ5</accession>
    <name>A0A0M2UWZ5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">Transcription termination/antitermination protein NusG</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">nusG</name>
        <name evidence="9" type="ORF">BROFUL_02262</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 6">Participates in transcription elongation, termination and antitermination.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 6">Belongs to the NusG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000224">
        <property type="protein sequence ID" value="KKO19019.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19019">
        <property type="protein sequence ID" value="KKO19019"/>
        <property type="gene ID" value="BROFUL_02262"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2824"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006354">
        <property type="term" value="P:DNA-templated transcription, elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006353">
        <property type="term" value="P:DNA-templated transcription, termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032784">
        <property type="term" value="P:regulation of DNA-templated transcription, elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031564">
        <property type="term" value="P:transcription antitermination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.940">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00948">
        <property type="entry name" value="NusG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005824">
        <property type="entry name" value="KOW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006645">
        <property type="entry name" value="NGN_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036735">
        <property type="entry name" value="NGN_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043425">
        <property type="entry name" value="NusG-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014722">
        <property type="entry name" value="Rib_L2_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001062">
        <property type="entry name" value="Transcrpt_antiterm_NusG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015869">
        <property type="entry name" value="Transcrpt_antiterm_NusG_bac_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30265">
        <property type="entry name" value="PTHR30265"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30265:SF2">
        <property type="entry name" value="PTHR30265:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02357">
        <property type="entry name" value="NusG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00338">
        <property type="entry name" value="NUSGTNSCPFCT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00739">
        <property type="entry name" value="KOW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00738">
        <property type="entry name" value="NGN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="SSF50104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82679">
        <property type="entry name" value="SSF82679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00922">
        <property type="entry name" value="nusG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01014">
        <property type="entry name" value="NUSG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 6" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 5 6" id="KW-0889">Transcription antitermination</keyword>
    <keyword evidence="3 5 6" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="1 5 6" id="KW-0806">Transcription termination</keyword>
    <feature type="domain" description="NGN" evidence="7">
        <location>
            <begin position="2"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="KOW" evidence="8">
        <location>
            <begin position="128"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00948"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00739"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19019.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="182" mass="20689" checksum="1ADABAE0F7215745" modified="2015-11-11" version="1">MPKQWFVLRVQSNKEDKVRESLIELIKARGLEGVVSTVLVPSEKVSEIKGGKKKITERKIYPGYIMAEVEVDEQGMIPKEVWFLVRETPGAGDFIGGKSRPVPMASYEVEKLLSEVEHKEEKPRAKVEFREGEKVRVKEGPFENYDGIIEEVLPASGRVKVMLTVFGRATPVELEYWQVEAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX68</accession>
    <name>A0A0M2UX68_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01104</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20145.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20145">
        <property type="protein sequence ID" value="KKO20145"/>
        <property type="gene ID" value="BROFUL_01104"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20145.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="44" mass="4823" checksum="54AF8ABDACAE9521" modified="2015-11-11" version="1">MKMIAVRDIEALKRYFESRKGVAFAFLFGSQARGGAATKLSDIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXA9</accession>
    <name>A0A0M2UXA9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00554</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000077">
        <property type="protein sequence ID" value="KKO20718.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20718">
        <property type="protein sequence ID" value="KKO20718"/>
        <property type="gene ID" value="BROFUL_00554"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644078" evidence="1">
        <location>
            <begin position="22"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20718.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="170" mass="19206" checksum="C09B0AC8FF028D45" modified="2015-11-11" version="1">MKHLYLLTIFFSFSLHTVSLAQGNIVDYFLKDPKAWDETKKIIHKTPTRVVIPDGCTSLGFYLAELTQGDEVALIFIDTQKSDKLKQTGFCEAGDKLLPGLNRVVSVLTRNSGDRTRFHYKFILQRNINNVPVSVYHNGNAVLESRYDGSQPVKDISNLSGIELCEIEVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXB2</accession>
    <name>A0A0M2UXB2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Holliday junction ATP-dependent DNA helicase RuvB</fullName>
            <ecNumber evidence="6">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">ruvB</name>
        <name evidence="8" type="ORF">BROFUL_01055</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="6">Forms a complex with RuvA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the RuvB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20205.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20205">
        <property type="protein sequence ID" value="KKO20205"/>
        <property type="gene ID" value="BROFUL_01055"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1319"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009378">
        <property type="term" value="F:four-way junction helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00016">
        <property type="entry name" value="DNA_helic_RuvB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041445">
        <property type="entry name" value="AAA_lid_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004605">
        <property type="entry name" value="DNA_helicase_Holl-junc_RuvB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008824">
        <property type="entry name" value="RuvB-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008823">
        <property type="entry name" value="RuvB_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42848">
        <property type="entry name" value="PTHR42848"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17864">
        <property type="entry name" value="AAA_lid_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05491">
        <property type="entry name" value="RuvB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05496">
        <property type="entry name" value="RuvB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00635">
        <property type="entry name" value="ruvB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5 6" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="6" id="KW-0234">DNA repair</keyword>
    <keyword evidence="3 6 8" id="KW-0347">Helicase</keyword>
    <keyword evidence="2 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0742">SOS response</keyword>
    <feature type="domain" description="AAA" evidence="7">
        <location>
            <begin position="42"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="50"/>
            <end position="57"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20205.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="329" mass="37265" checksum="E74E513144A7FE6F" modified="2015-11-11" version="1">MDEDKNLDCTLRPKRFRDFIGQDRIKENLLIYIEAAKKRAEPLDHILFSGPPGLGKTTLSQIIANEINASIKTTSGPILDKPMDLAGILTNLQPGDILFIDEIHRLNTTVEEYLYSAMEDFYIDILIDQGPKARSVKINLPKFTLVGSTTREGLLTAPLRSRFGVLEKLEFYPWTDLYKVVCNSAQILSIHTDEKGAEIIAKRSRGTPRIANRFLRRIRDVAQVRGNDIINEDIARMGLQMLGVDENGLGEMDRKILETLIRHGGPVGLKTIAVSVSEEEDTIEEVYESYLIQRGYLDKTPRGRVATKLAYEHLGFQYRSETGIQKRLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXD4</accession>
    <name>A0A0M2UXD4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01656</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19621.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19621">
        <property type="protein sequence ID" value="KKO19621"/>
        <property type="gene ID" value="BROFUL_01656"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19621.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="80" mass="8715" checksum="DACC7AA9313E9271" modified="2015-11-11" version="1">MCKNVNVATGLRMGMTQKTKGDVEVKISLAKKDKVLKFHDGETILYTGKLVERCGDSTPYILEDGDIMTTKESSMGIGGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXH2</accession>
    <name>A0A0M2UXH2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01015</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000119">
        <property type="protein sequence ID" value="KKO20270.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20270">
        <property type="protein sequence ID" value="KKO20270"/>
        <property type="gene ID" value="BROFUL_01015"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20270.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="139" mass="15540" checksum="ED1407047FAD4A3C" modified="2015-11-11" version="1">MLKNSMTGISTRREAALTDRGWIMEEMPRTVRMLKILLPSTFPTLISDSLRMAATREVASSGRDVPTAITVRPMTSSLIPMTLAIKIAAWTRKCAPPMSAPSPMRIRKMFFLTFVSSVPRNSSYSCSTRLASFKAMRYT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXK6</accession>
    <name>A0A0M2UXK6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02082</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000209">
        <property type="protein sequence ID" value="KKO19204.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19204">
        <property type="protein sequence ID" value="KKO19204"/>
        <property type="gene ID" value="BROFUL_02082"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644083" evidence="1">
        <location>
            <begin position="27"/>
            <end position="310"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19204.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="310" mass="35710" checksum="0F91765FA625249E" modified="2015-11-11" version="1">MVIISKILIRIPLFSIWCFPLATVNAQEGETGMKLVNQMPDYGLPDQKRVDEFLLDFKKPTGHISREQRAGKLDDRIRNARLTLADKIEAFKRVAPRADATSQRKELRMERLLISVAPEDLPLFKFVLEYDGDYKDMVEYVFSDIDDKECQGRILNYLRTVKQQAGIKVLTDVDDTMYANLIDDRYPGETRYPGVLEFYDSLKQEPFDLQVIPVTTLSRAPIRLPASWRRTALRSWGISAIVRAGGCVRVHCRETLAVQSLALWRPFTGKASSAPRQDSPWPGEQDWRGEVYEFREVFKGLPRISLCFCW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXM9</accession>
    <name>A0A0M2UXM9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Tyrosine recombinase XerC</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">xerC</name>
        <name evidence="14" type="ORF">BROFUL_01569</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC-XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Forms a cyclic heterotetrameric complex composed of two molecules of XerC and two molecules of XerD.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the 'phage' integrase family. XerC subfamily.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the 'phage' integrase family. XerD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000164">
        <property type="protein sequence ID" value="KKO19721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19721">
        <property type="protein sequence ID" value="KKO19721"/>
        <property type="gene ID" value="BROFUL_01569"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1932"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009037">
        <property type="term" value="F:tyrosine-based site-specific recombinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007059">
        <property type="term" value="P:chromosome segregation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01808">
        <property type="entry name" value="Recomb_XerC_XerD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044068">
        <property type="entry name" value="CB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004107">
        <property type="entry name" value="Integrase_SAM-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011932">
        <property type="entry name" value="Recomb_XerD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023009">
        <property type="entry name" value="Tyrosine_recombinase_XerC/XerD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02899">
        <property type="entry name" value="Phage_int_SAM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02225">
        <property type="entry name" value="recomb_XerD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51900">
        <property type="entry name" value="CB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 10" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="4 10" id="KW-0132">Cell division</keyword>
    <keyword evidence="5 10" id="KW-0159">Chromosome partition</keyword>
    <keyword evidence="3 10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 10" id="KW-0229">DNA integration</keyword>
    <keyword evidence="8 10" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="7 10 11" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Core-binding (CB)" evidence="13">
        <location>
            <begin position="5"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="domain" description="Tyr recombinase" evidence="12">
        <location>
            <begin position="112"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="active site" evidence="10">
        <location>
            <position position="152"/>
        </location>
    </feature>
    <feature type="active site" evidence="10">
        <location>
            <position position="176"/>
        </location>
    </feature>
    <feature type="active site" evidence="10">
        <location>
            <position position="247"/>
        </location>
    </feature>
    <feature type="active site" evidence="10">
        <location>
            <position position="250"/>
        </location>
    </feature>
    <feature type="active site" evidence="10">
        <location>
            <position position="273"/>
        </location>
    </feature>
    <feature type="active site" description="O-(3'-phospho-DNA)-tyrosine intermediate" evidence="10">
        <location>
            <position position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KKO19721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="301" mass="34163" checksum="8B146418BE0FD717" modified="2015-11-11" version="1">MPEADTLDDLTESFINYLLVECGLSRNTILSYSHDLQLFTRFLLSKEISGFDGVRPDMITSFIISEKNRGLSINSISRTIVAIRMLYKFLLSEGKLRTNPFTVIDSPKLWKRLPEVIPVHKIDDLLAVPNTQTKLGMRNKAILELMYATGARVSEVVAIQMDWVNLEYRYMKCRGKGSKERIVPLGTKAIEAIQGYLTLARPELKNSRDSAYLFLSKAGRPLRRENIWVVVKNCAAKAGIPGKISPHKLRHSFATHLLENGADLRSVQEMLGHVNVSTTQIYTHVGKQHLKAIHRHYHPRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXW1</accession>
    <name>A0A0M2UXW1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00580</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000081">
        <property type="protein sequence ID" value="KKO20692.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20692">
        <property type="protein sequence ID" value="KKO20692"/>
        <property type="gene ID" value="BROFUL_00580"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005358">
        <property type="entry name" value="Puta_zinc/iron-chelating_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03692">
        <property type="entry name" value="CxxCxxCC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20692.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="151" mass="17695" checksum="3016078E77AE1030" modified="2015-11-11" version="1">MDDVKMCEHKDVQGDTQPWYKEGLRFECQRCGRCCRGEPGVVWVHKREIENIAAFFGITQQAFAKNYLRTINDRCSLIEYSNGDCIMYDNGCKIYDVRPCQCRTFPFWKSTLENRSEWEKLKKTCPGVGKGKVHTMKEIEENVKIYEGRFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXZ5</accession>
    <name>A0A0M2UXZ5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetyltransferase (GNAT) family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01954</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000200">
        <property type="protein sequence ID" value="KKO19339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19339">
        <property type="protein sequence ID" value="KKO19339"/>
        <property type="gene ID" value="BROFUL_01954"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="3"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="225" mass="24185" checksum="59313774E6435A1E" modified="2015-11-11" version="1" fragment="single">MNVTLRPGNAKDSTRCGAICYEAFKTIAELHNFPPDFASPEVATEFLAGLLAHPGFHAVVAELDGQIVGSNFLDERSVVAGIGPITVDPAAQNRSVGRQLMQHVLNRVTQRRFPGVRLVQGAFHNRSLSLYAKLGFTAREPLSIMQGAPLAVQIPGYTVRPATERDMDTCNRVCAQVHGHDRCGELLDAVTQGIATIVEHGGRITGYATPIAFFGHAVGETNEAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY53</accession>
    <name>A0A0M2UY53_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cobalamin biosynthesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01866</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000194">
        <property type="protein sequence ID" value="KKO19404.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19404">
        <property type="protein sequence ID" value="KKO19404"/>
        <property type="gene ID" value="BROFUL_01866"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2328"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021744">
        <property type="entry name" value="CbiG_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002750">
        <property type="entry name" value="CobE/GbiG_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036518">
        <property type="entry name" value="CobE/GbiG_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038029">
        <property type="entry name" value="GbiG_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01890">
        <property type="entry name" value="CbiG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11760">
        <property type="entry name" value="CbiG_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF159664">
        <property type="entry name" value="SSF159664"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF159672">
        <property type="entry name" value="SSF159672"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CbiG_N" evidence="2">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="CbiG_C" evidence="1">
        <location>
            <begin position="71"/>
            <end position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01890"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF11760"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19404.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="195" mass="21274" checksum="2C579FAAEE015BB6" modified="2015-11-11" version="1">MAMGIVVRVIAHNIQDKYTDPAVVVVDDVGRFVISLLSGHEGGANLLAHRIAAILHTDAVITTGTEAKKDLIIGIGCKKGVSSEAVKQSIFHALHMVNLPLERIRLLATIDIKSEEPGLLQAAEELGIPLRIVSRQEIAVCEKKHDKSNFVKEKIGVWGVCEPTALLSGRKTQLLLKKQKYPGVTVAIAQENFMW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYA2</accession>
    <name>A0A0M2UYA2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Flagellin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01828</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Secreted</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Bacterial flagellum</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the bacterial flagellin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000190">
        <property type="protein sequence ID" value="KKO19449.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19449">
        <property type="protein sequence ID" value="KKO19449"/>
        <property type="gene ID" value="BROFUL_01828"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2273"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009288">
        <property type="term" value="C:bacterial-type flagellum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005198">
        <property type="term" value="F:structural molecule activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001492">
        <property type="entry name" value="Flagellin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046358">
        <property type="entry name" value="Flagellin_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001029">
        <property type="entry name" value="Flagellin_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42792">
        <property type="entry name" value="PTHR42792"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00700">
        <property type="entry name" value="Flagellin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00669">
        <property type="entry name" value="Flagellin_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00207">
        <property type="entry name" value="FLAGELLIN"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="6" id="KW-0966">Cell projection</keyword>
    <keyword evidence="6" id="KW-0969">Cilium</keyword>
    <keyword evidence="6" id="KW-0282">Flagellum</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0964">Secreted</keyword>
    <feature type="domain" description="Flagellin_N" evidence="4">
        <location>
            <begin position="5"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="domain" description="Flagellin_C" evidence="5">
        <location>
            <begin position="224"/>
            <end position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005709"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU362073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19449.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="309" mass="32430" checksum="C82DBD77196B8B6F" modified="2015-11-11" version="1">MSTRINTNIGALNALRSLTDVNNRMSVAQLRLATGKRINNAADDAAGYSIAKKMNVRAKGLGQALNNIGSAKNLLSVGEGHLNNIVEILTQMKAKAIQAADDSLGTSERTAIKAELAALSNQIDLEVQQATWNSKNIFNGTASSNATAGNVLFKFQIGAGNSSTNDLLQFNLLRTGNVSLESGNTGFRASQLRLDASSGGTRLSGNTLAGSLLGSSASAHLLMARLDNAVADVSEALSYIGAVVNRLTYQEATLSVAQTNTEGARSRIEDADMAFEQLESTKLQILQQTASAMLAQANSGPQAILSLFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYB9</accession>
    <name>A0A0M2UYB9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">30S ribosomal protein S18</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3 5" type="primary">rpsR</name>
        <name evidence="5" type="ORF">BROFUL_00688</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Part of the 30S ribosomal subunit. Forms a tight heterodimer with protein S6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the bacterial ribosomal protein bS18 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20570.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20570">
        <property type="protein sequence ID" value="KKO20570"/>
        <property type="gene ID" value="BROFUL_00688"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00270">
        <property type="entry name" value="Ribosomal_S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001648">
        <property type="entry name" value="Ribosomal_S18"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036870">
        <property type="entry name" value="Ribosomal_S18_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01084">
        <property type="entry name" value="Ribosomal_S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00974">
        <property type="entry name" value="RIBOSOMALS18"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46911">
        <property type="entry name" value="SSF46911"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00165">
        <property type="entry name" value="S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1 3 4" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20570.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="73" mass="8459" checksum="D8A96C918FE141E8" modified="2015-11-11" version="1">MTKRMFNKTSKCRFCRMGVGEVDYKDTQNLPKLTTSQGKLFSRKRSGNCARHQRSVKVSIKRARFMALLPYVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYC1</accession>
    <name>A0A0M2UYC1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01319</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000138">
        <property type="protein sequence ID" value="KKO19971.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19971">
        <property type="protein sequence ID" value="KKO19971"/>
        <property type="gene ID" value="BROFUL_01319"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1632"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19971.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="92" mass="10992" checksum="55BF81AADF67FE3E" modified="2015-11-11" version="1">MDRGIPTEEMLEKMRERGIDYLVGTPKGHLTRVEKPLLEQTWMEQAVKRESDLFPSTVIWRQLERRIEYFLFGFLSPHSKTHGSFRHLSYLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYD8</accession>
    <name>A0A0M2UYD8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_00709</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20590.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20590">
        <property type="protein sequence ID" value="KKO20590"/>
        <property type="gene ID" value="BROFUL_00709"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032688">
        <property type="entry name" value="ABC2_membrane_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12679">
        <property type="entry name" value="ABC2_membrane_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="52"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="98"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="148"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="188"/>
            <end position="212"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20590.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="218" mass="23991" checksum="7FBDABF634E69D81" modified="2015-11-11" version="1">MIQEMGLSTITICCLSLAALSATNTISREIEKGTIMMLLSKPVDKRSVILGKFFGILAVVSSVFLAMGILLTGFLWIRESLHPSAGLRSSFALTGHTTVVRLAFSFLSIAIMCAVATAFSVYLGMMSNLCCCMAIYILGNLTSFFHGLFPATAIWTRWYLAFAFVFFPNLEDFNTIGMGSRGESLNSFFAPALLLYAILYITMVITLAIKFFNNKECR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYF4</accession>
    <name>A0A0M2UYF4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ammonium transporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_00719</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the ammonia transporter channel (TC 1.A.11.2) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20600">
        <property type="protein sequence ID" value="KKO20600"/>
        <property type="gene ID" value="BROFUL_00719"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.911"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008519">
        <property type="term" value="F:ammonium transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029020">
        <property type="entry name" value="Ammonium/urea_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001905">
        <property type="entry name" value="Ammonium_transpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024041">
        <property type="entry name" value="NH4_transpt_AmtB-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43029">
        <property type="entry name" value="PTHR43029"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00909">
        <property type="entry name" value="Ammonium_transp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00836">
        <property type="entry name" value="amt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0924">Ammonia transport</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644096" description="Ammonium transporter" evidence="7">
        <location>
            <begin position="28"/>
            <end position="446"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="37"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="71"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="127"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="159"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="192"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="228"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="260"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="291"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="315"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="344"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="390"/>
            <end position="411"/>
        </location>
    </feature>
    <feature type="domain" description="Ammonium_transp" evidence="8">
        <location>
            <begin position="39"/>
            <end position="438"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU362002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20600.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="446" mass="47293" checksum="E2220578EF402D09" modified="2015-11-11" version="1">MRKGAFLGVSSIFAVSMIMLFASNALAQDAPQIDKGNNAWLLTSSALVLIMTPGLALFYGGMVRAKNMVNTMWLSFIVMCIVSVQWVLYGYSLSFAPGGWFIGGLQWCGLGAGTVGQAPSDIYATTIPHLTFMTFQCMFAIITPALMTGTFAERFKFNAWLLLVLLWTAAVYAPMAHWVWAPDGWLFKLGALDFAGGTVVHICSGASGAAVMMLVGKRKGFPKEIKPPHNLPFMMLGTGLLWFGWFGFNAGSAVAADGLAASAFVVTNTSAAAAGFTWSVLEWIHHKKPTILGACSGAVAGLVAITPASGFVGPMASIAIGVGGGLVCFYCVTKMKKTLGYDDALDVIGVHAMGGTWGAFATGIFCSTAVNPAGVDGLIYGNVAIVGKQWIGIIAAWAWSFGITTLLGWFVHAIMGLRPSESEEVAGMDISQHKEIAYHHYETEST</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYG7</accession>
    <name>A0A0M2UYG7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">CxxC_CXXC_SSSS domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00159</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000017">
        <property type="protein sequence ID" value="KKO21113.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21113">
        <property type="protein sequence ID" value="KKO21113"/>
        <property type="gene ID" value="BROFUL_00159"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.197"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013429">
        <property type="entry name" value="Regulatory_FmdB_Zinc_ribbon"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09723">
        <property type="entry name" value="Zn-ribbon_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00834">
        <property type="entry name" value="CxxC_CXXC_SSSS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02605">
        <property type="entry name" value="CxxC_CxxC_SSSS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CxxC_CXXC_SSSS" evidence="2">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="65"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00834"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO21113.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="88" mass="9886" checksum="0487EBF33C9918E1" modified="2015-11-11" version="1">MPTYDYKCSACSHSFELFQHIKENPVKKCPACGKLKVERVIGAGGAVIFKGSGFYQTDYRSEEYKSKAKKEAEPVKSEKSETKATEKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYI9</accession>
    <name>A0A0M2UYI9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Major royal jelly protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01227</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000134">
        <property type="protein sequence ID" value="KKO20051.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20051">
        <property type="protein sequence ID" value="KKO20051"/>
        <property type="gene ID" value="BROFUL_01227"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1519"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017996">
        <property type="entry name" value="Royal_jelly/protein_yellow"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10009">
        <property type="entry name" value="PTHR10009"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03022">
        <property type="entry name" value="MRJP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20051.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="396" mass="44345" checksum="F502C7A1261C4054" modified="2015-11-11" version="1">MFYAFLFKYRKFVNNIVSQKSITMKNIFLFIATASTLFLAFSVTAQNPNKKAEAELFASSEHSVGNIAFTPEGNLVYSYHPFFSPRYRVVKYDVKTKKIEPFPNEEWNTPSETHDYFLSSVLGIRNDSNGIVWMLDMGHRNNVTPKIVGWNTWTNRLEKIYYIPAPATLPTSQHNDMVVDEDHGVFIIADEGIANGGDGSQAGIVTVDMKSGKVRRLLTGHRTTIPESQPTVVAEKTLFSGKAPLLVGADGITADKNNEWLYYAPLNGTKIYRVKIENLINEKLSEGELDKRIEIYSSKPNNGGLSIDKSNNLYLTAVESNSISVVLAEDKSVQTLVQNENMLWPDGVSYNSADGYMYVSASQIHLGDIFNNGVDKTTQPFYIFRFKPISKGITGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYM1</accession>
    <name>A0A0M2UYM1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01718</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000177">
        <property type="protein sequence ID" value="KKO19574.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19574">
        <property type="protein sequence ID" value="KKO19574"/>
        <property type="gene ID" value="BROFUL_01718"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19574.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="85" mass="9805" checksum="2942761C1F3488B9" modified="2015-11-11" version="1">MKAAKHEEMRKEYKREDLGKGIRGKYFKEYKKGTNLVLLSPDVAVAFPDDASVNEALRSLIKIAQQSTGLTRQRRERGQIFIHDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYM4</accession>
    <name>A0A0M2UYM4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8 10">1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase</fullName>
            <ecNumber evidence="8 10">5.3.1.16</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">hisA</name>
        <name evidence="11" type="ORF">BROFUL_01193</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8 10">
            <text>1-(5-phospho-beta-D-ribosyl)-5-[(5-phospho-beta-D-ribosylamino)methylideneamino]imidazole-4-carboxamide = 5-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide</text>
            <dbReference type="Rhea" id="RHEA:15469"/>
            <dbReference type="ChEBI" id="CHEBI:58435"/>
            <dbReference type="ChEBI" id="CHEBI:58525"/>
            <dbReference type="EC" id="5.3.1.16"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 8 10">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 4/9.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 8 10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 8 9">Belongs to the HisA/HisF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.16" evidence="8 10"/>
    <dbReference type="EMBL" id="LAQJ01000127">
        <property type="protein sequence ID" value="KKO20081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20081">
        <property type="protein sequence ID" value="KKO20081"/>
        <property type="gene ID" value="BROFUL_01193"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1474"/>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00009"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003949">
        <property type="term" value="F:1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04732">
        <property type="entry name" value="HisA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01014">
        <property type="entry name" value="HisA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006062">
        <property type="entry name" value="His_biosynth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006063">
        <property type="entry name" value="HisA_bact_arch"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044524">
        <property type="entry name" value="Isoase_HisA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023016">
        <property type="entry name" value="Isoase_HisA-like_bact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43090">
        <property type="entry name" value="PTHR43090"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00977">
        <property type="entry name" value="His_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="SSF51366"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00007">
        <property type="entry name" value="TIGR00007"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8 9" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8 10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8 9" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="7 8 10" id="KW-0413">Isomerase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="8">
        <location>
            <position position="8"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="8">
        <location>
            <position position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009667"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003658"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO20081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="215" mass="23023" checksum="4F44344DB7644957" modified="2015-11-11" version="1">MLIIPAIDLKNGKCVRLTQGEKDAETVFSDDPVEVARSWEDQGAEYLHIVDLDGAFEGAPRNLAVVERILQQIKIPVEFGGGLRTTRSVETLLNLGVDRVIVGTRAIDSPSWVHELCAAFPGRIAVGIDAKNGKVAVKGWTSVCEWDAVAFAREMEKTAPCAMIFTDISKDGMLQGPNIASLKEFSAAVTTPVIASGGISSLKDIETLSRLSLAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYN1</accession>
    <name>A0A0M2UYN1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00075</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000008">
        <property type="protein sequence ID" value="KKO21193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21193">
        <property type="protein sequence ID" value="KKO21193"/>
        <property type="gene ID" value="BROFUL_00075"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010980">
        <property type="entry name" value="Cyt_c/b562"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47175">
        <property type="entry name" value="SSF47175"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="165" mass="18754" checksum="02854D3000CD6A1F" modified="2015-11-11" version="1">MLSMKKFIIPLLFMIGLFGCGKNETEVLEKKPASSEKGQAETKHHEELGFIKNEEGFIVHMKDIKVLLKHLSTSIHQQDWEAIKKDTKKLKEASPVAFTGANKKDLPVEFINLDVRFHMSALELISASQEKNKDKATAAFFKVVNSCDECHAKFNPKEESTSWFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYP9</accession>
    <name>A0A0M2UYP9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Heavy metal efflux pump</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00057</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000007">
        <property type="protein sequence ID" value="KKO21218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21218">
        <property type="protein sequence ID" value="KKO21218"/>
        <property type="gene ID" value="BROFUL_00057"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.71"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008324">
        <property type="term" value="F:cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2090.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027463">
        <property type="entry name" value="AcrB_DN_DC_subdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001036">
        <property type="entry name" value="Acrflvin-R"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004763">
        <property type="entry name" value="CzcA/CusA/SilA/NccA/HelA/CnrA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32063">
        <property type="entry name" value="PTHR32063"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00873">
        <property type="entry name" value="ACR_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00702">
        <property type="entry name" value="ACRIFLAVINRP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82714">
        <property type="entry name" value="SSF82714"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00914">
        <property type="entry name" value="2A0601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="351"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="395"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="453"/>
            <end position="472"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="484"/>
            <end position="508"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="529"/>
            <end position="554"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="897"/>
            <end position="914"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="921"/>
            <end position="940"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="952"/>
            <end position="972"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="993"/>
            <end position="1012"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="1024"/>
            <end position="1047"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO21218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1058" mass="115974" checksum="3BA3CCD70862C165" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYQ6</accession>
    <name>A0A0M2UYQ6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glucosyl-transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">waaE</name>
        <name evidence="3" type="ORF">BROFUL_01712</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000176">
        <property type="protein sequence ID" value="KKO19604.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19604">
        <property type="protein sequence ID" value="KKO19604"/>
        <property type="gene ID" value="BROFUL_01712"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="220"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="8"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19604.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="263" mass="30858" checksum="D3EC17EAF9E17696" modified="2015-11-11" version="1">MDQKFPLSACIITFNEESRIRDCLESVKWVDEIIVVDSLSTDKTVDICREYSDKVYQRAWPGNIDQKNYAMGLAKNDWILSLDADERLSPGLIGEIQDAIRNPGNILGFFFPRRSFYLGRWIYHGEWYPDYQLRLFRRGSGQWQGTNPHGRVVVAGKARYMKHDLYHFNYKNFAHQLRTIDNYSTIFADIMADRGKGFGLFKLLFQPLYKFIKGYFFKRGFLDGLPGFIIATSSAFYIFTKQVKLWERSQNRETKKASEESKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYS4</accession>
    <name>A0A0M2UYS4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cytochrome c oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_00033</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000006">
        <property type="protein sequence ID" value="KKO21238.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21238">
        <property type="protein sequence ID" value="KKO21238"/>
        <property type="gene ID" value="BROFUL_00033"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008168">
        <property type="entry name" value="Cyt_C_IC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13442">
        <property type="entry name" value="Cytochrome_CBB3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00605">
        <property type="entry name" value="CYTCHROMECIC"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0349">Heme</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cytochrome c" evidence="6">
        <location>
            <begin position="32"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="52"/>
            <end position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO21238.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="120" mass="13569" checksum="2DFB0CD155ABAADD" modified="2015-11-11" version="1">MDDRKRSGVCGVFVLAFFGLFPGFSTVLGQEGEEINPKKLFEYHCATCHGEDGKGTKRGRELKAPNLADPEWQGKKNDEEVLSSIMNGKNKMPRWSDKLKPEEIQALARYVRKLAPKKRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ41</accession>
    <name>A0A0M2UZ41_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">dTDP-4-dehydrorhamnose reductase</fullName>
            <ecNumber evidence="2">1.1.1.133</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01076</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>dTDP-beta-L-rhamnose + NADP(+) = dTDP-4-dehydro-beta-L-rhamnose + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:21796"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57510"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:62830"/>
            <dbReference type="EC" id="1.1.1.133"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Carbohydrate biosynthesis; dTDP-L-rhamnose biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the dTDP-4-dehydrorhamnose reductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.133" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20226">
        <property type="protein sequence ID" value="KKO20226"/>
        <property type="gene ID" value="BROFUL_01076"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1341"/>
    <dbReference type="UniPathway" id="UPA00124"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008831">
        <property type="term" value="F:dTDP-4-dehydrorhamnose reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019305">
        <property type="term" value="P:dTDP-rhamnose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005913">
        <property type="entry name" value="dTDP_dehydrorham_reduct"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029903">
        <property type="entry name" value="RmlD-like-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10491">
        <property type="entry name" value="PTHR10491"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04321">
        <property type="entry name" value="RmlD_sub_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01214">
        <property type="entry name" value="rmlD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0521">NADP</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RmlD_sub_bind" evidence="3">
        <location>
            <begin position="1"/>
            <end position="284"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010944"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU364082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF04321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="291" mass="32273" checksum="2BBEC93532DC8931" modified="2015-11-11" version="1">MKILVLGSRGMLGRSLVSRLPGFANTSFPLIKVIAAHYEHVDITQGSNTARFITQTMPDVIVNCAAFTNVDACETQISEAFAVNATGAKNIALAGKETGSKIIHISTDYVFDGTKNQSYAETDRPNPVSIYGKSKYEGELAIQEISDLYAIIRTAWLYGQYKKNFVTTMLDLGKKNGFVSVVTDQFGSPTYTADLSYAIWNVISKDLQGIYHVANTGICSRYEWASKIFELTGDKVSVFPMKTVDYKRAATVPQNSSLSCLKYTMKSGHTMRPWQEALEEYLGTFHYPNAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ66</accession>
    <name>A0A0M2UZ66_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DNA ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01022</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000120">
        <property type="protein sequence ID" value="KKO20256.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20256">
        <property type="protein sequence ID" value="KKO20256"/>
        <property type="gene ID" value="BROFUL_01022"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1283"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041596">
        <property type="entry name" value="Lig_Pab1020_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021122">
        <property type="entry name" value="RNA_ligase_dom_REL/Rnl2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001072">
        <property type="entry name" value="RNA_ligase_Pab1020"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18330">
        <property type="entry name" value="Lig_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09414">
        <property type="entry name" value="RNA_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01048">
        <property type="entry name" value="Y414FAMILY"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01209">
        <property type="entry name" value="TIGR01209"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNA_ligase" evidence="1">
        <location>
            <begin position="81"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="domain" description="Lig_C" evidence="2">
        <location>
            <begin position="248"/>
            <end position="369"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09414"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18330"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20256.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="374" mass="43047" checksum="492F72F41292C5E8" modified="2015-11-11" version="1">MQMYDIVNQVGITESLWRESIERHDAVSEEFDGIRFFRITKKIGVLGKGSIITEEGIIFGFPSIARVLHLENGVRNAYRHPFYVEEKVDGYNVRVVRIQGRVLVFSRGAYVCPFSTDRIADFLEAKKIFDDMPGLIVCGEFAGPDNPYNIEHPPYVKEDVGFFAFDLMSINQPHAIPVNERYKIFDTYRMPTVRRFGQFSASDISGLKTIMKELDSMGCEGVVLKPTHPAEKILKYVTLGSCLRDINVTAPLMPEMASEFFTHRIIRAAMFIYEQTRFLQPEVFSQLGKALLRPLCDNVAKAARNEVIDEQFLLRFREEKNIQRMIDHLHKCKVKFEVLSKNKIGNYWHVKFAKKCYATYEILQGHLQGATHVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZM9</accession>
    <name>A0A0M2UZM9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Iron sulfur protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00846</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000105">
        <property type="protein sequence ID" value="KKO20421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20421">
        <property type="protein sequence ID" value="KKO20421"/>
        <property type="gene ID" value="BROFUL_00846"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13247">
        <property type="entry name" value="Fer4_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="82"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="150" mass="16885" checksum="7C9B5ED0986F8BEF" modified="2015-11-11" version="1">MLKKKFVKDKCVTCKQCMIECGVRHSVSKNIYEAFAETPKPRYRLQVSTRKDKPHMTVCQNCAKPKCMASCEYGAITKYEDGNVVIDTKKCVGCWACVTQCPFGAITKDTELNFAFNCDDCKDFETMACVEACKTGALVYTEKHAKYQPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZR5</accession>
    <name>A0A0M2UZR5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Deoxyuridine 5'-triphosphate nucleotidohydrolase</fullName>
            <shortName evidence="4">dUTPase</shortName>
            <ecNumber evidence="4">3.6.1.23</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">dUTP pyrophosphatase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">dut</name>
        <name evidence="6" type="ORF">BROFUL_00817</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 4">
            <text>dUTP + H2O = diphosphate + dUMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10248"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61555"/>
            <dbReference type="ChEBI" id="CHEBI:246422"/>
            <dbReference type="EC" id="3.6.1.23"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4">Pyrimidine metabolism; dUMP biosynthesis; dUMP from dCTP (dUTP route): step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the dUTPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.23" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000103">
        <property type="protein sequence ID" value="KKO20461.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20461">
        <property type="protein sequence ID" value="KKO20461"/>
        <property type="gene ID" value="BROFUL_00817"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1033"/>
    <dbReference type="UniPathway" id="UPA00610">
        <property type="reaction ID" value="UER00666"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004170">
        <property type="term" value="F:dUTP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006226">
        <property type="term" value="P:dUMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046081">
        <property type="term" value="P:dUTP catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07557">
        <property type="entry name" value="trimeric_dUTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00116">
        <property type="entry name" value="dUTPase_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008181">
        <property type="entry name" value="dUTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029054">
        <property type="entry name" value="dUTPase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036157">
        <property type="entry name" value="dUTPase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033704">
        <property type="entry name" value="dUTPase_trimeric"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11241">
        <property type="entry name" value="PTHR11241"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00692">
        <property type="entry name" value="dUTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51283">
        <property type="entry name" value="SSF51283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00576">
        <property type="entry name" value="dut"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 4" id="KW-0546">Nucleotide metabolism</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="dUTPase" evidence="5">
        <location>
            <begin position="18"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="4">
        <location>
            <begin position="69"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="4">
        <location>
            <begin position="86"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="82"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20461.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="149" mass="16431" checksum="FADEE23635769CC5" modified="2015-11-11" version="1">MNTLKIKVMRRQGCEDLPLPQYMSEAASGMDLYAAVDTPVLIERNEIKLVPAGIHIEVPRGYEAQVRPRSGLALKHGLTLVNTPGTIDSDYRGEIGIILCNLGKERFTVERGMRIAQLVIQPVTRAELVEVERLEESPRGTGGFGHTGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZW7</accession>
    <name>A0A0M2UZW7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Methionyl-tRNA synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01243</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000135">
        <property type="protein sequence ID" value="KKO20044.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20044">
        <property type="protein sequence ID" value="KKO20044"/>
        <property type="gene ID" value="BROFUL_01243"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1540"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004825">
        <property type="term" value="F:methionine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006431">
        <property type="term" value="P:methionyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02800">
        <property type="entry name" value="tRNA_bind_EcMetRS_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004495">
        <property type="entry name" value="Met-tRNA-synth_bsu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002547">
        <property type="entry name" value="tRNA-bd_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01588">
        <property type="entry name" value="tRNA_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00399">
        <property type="entry name" value="metG_C_term"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50886">
        <property type="entry name" value="TRBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="1 3" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="TRNA-binding" evidence="4">
        <location>
            <begin position="6"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50886"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20044.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="108" mass="11723" checksum="ECB2A8745969DA10" modified="2015-11-11" version="1">MISIEDFLKIDLRVAEVRHAEPHPNADKLLILKIDAGDGMEGRQIVAGIRGAYQPEDLIGKKIVIVNNLTPATLRGVESQGMLLAAKDGNQVVILTTEKDIKPGSKIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZY0</accession>
    <name>A0A0M2UZY0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00760</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000096">
        <property type="protein sequence ID" value="KKO20516.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20516">
        <property type="protein sequence ID" value="KKO20516"/>
        <property type="gene ID" value="BROFUL_00760"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20516.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="88" mass="10507" checksum="765550810DCFDF27" modified="2015-11-11" version="1">MPSKTCRNNRAQHSRNQLPFRKWGKGDYKNLQKRTILQDDKGEQTPKKRFYAAMLLPAQAHFLFIGRNLFQRQFVFRVVSEGILEKWP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V005</accession>
    <name>A0A0M2V005_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00087</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000009">
        <property type="protein sequence ID" value="KKO21180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21180">
        <property type="protein sequence ID" value="KKO21180"/>
        <property type="gene ID" value="BROFUL_00087"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd16377">
        <property type="entry name" value="23S_rRNA_IVP_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1440.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012657">
        <property type="entry name" value="23S_rRNA-intervening_sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036583">
        <property type="entry name" value="23S_rRNA_IVS_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38471">
        <property type="entry name" value="PTHR38471"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05635">
        <property type="entry name" value="23S_rRNA_IVP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158446">
        <property type="entry name" value="SSF158446"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02436">
        <property type="entry name" value="TIGR02436"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="131" mass="15375" checksum="9F742F17C37E6DDE" modified="2015-11-11" version="1">MRIEDLEVYRIAGGINKCGWDIYTKMKSEYRFGIGQQFIRAIDSIGANIAEGFGRYHYLDSVKFYYNARGSLWESKYWVDLLHERDLIQDEIYKPIIEKLDVLGVKINNFISSIKSRANKDKNSNYSVKIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V061</accession>
    <name>A0A0M2V061_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">GIY-YIG domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01136</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000123">
        <property type="protein sequence ID" value="KKO20134.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20134">
        <property type="protein sequence ID" value="KKO20134"/>
        <property type="gene ID" value="BROFUL_01136"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1407"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd10441">
        <property type="entry name" value="GIY-YIG_COG1833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002837">
        <property type="entry name" value="DUF123"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000305">
        <property type="entry name" value="GIY-YIG_endonuc"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37460">
        <property type="entry name" value="PTHR37460"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01986">
        <property type="entry name" value="DUF123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00465">
        <property type="entry name" value="GIYc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GIY-YIG" evidence="1">
        <location>
            <begin position="107"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20134.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="215" mass="24890" checksum="71E1E6DA81F251AE" modified="2015-11-11" version="1">MCFRRRCERSTRICERQPEKTGIKISAFHLEENFLYCLSEVYRKIEACDALSIRQVLIMDSNSSSPARVGKYRNITRRARSMSETLVLKKGIYGLVVRVLQRSSLEIGRLGTFDFPAGFYVYVGSAQNNLEHRIKRHLQREKKVRWHIDYLLPYGRVVSVHTYAGEKKKECVLSRKIGKMKDASAPVKGFGSSDCSCYSHLYFFQHAPVISRLRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0N6</accession>
    <name>A0A0M2V0N6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">TRASH domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00528</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000073">
        <property type="protein sequence ID" value="KKO20746.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20746">
        <property type="protein sequence ID" value="KKO20746"/>
        <property type="gene ID" value="BROFUL_00528"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011017">
        <property type="entry name" value="TRASH_dom"/>
    </dbReference>
    <dbReference type="SMART" id="SM00746">
        <property type="entry name" value="TRASH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644338" description="TRASH domain-containing protein" evidence="1">
        <location>
            <begin position="24"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="domain" description="TRASH" evidence="2">
        <location>
            <begin position="47"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20746.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="106" mass="11476" checksum="C5C5210BEDCAE5FD" modified="2015-11-11" version="1">MKRFGYFAGVVALVGMVMTTYVATSTYASGCCGTKEASAAEKADSKCLVCGKAIDKDKGVKVECEGKSVTLCCNDCAAAFKKDPCKFCDDEKCEKRKEHHHQEGHH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1B3</accession>
    <name>A0A0M2V1B3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00326</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000040">
        <property type="protein sequence ID" value="KKO20946.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20946">
        <property type="protein sequence ID" value="KKO20946"/>
        <property type="gene ID" value="BROFUL_00326"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="61"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="89"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="122"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="159"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="187"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="232"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="335"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="377"/>
            <end position="397"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20946.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="419" mass="47923" checksum="979287EC5BB5352E" modified="2015-11-11" version="1">MNIFAQKNLHTPVVILTILTFAMLPIYLLPSGGFQFVDVIIILLSLATLIAVNVSEIQIGIYLIGPFIPFVSWAVIVNSYYSMETISKGGYFLTLIQLIFGFYIVFLFSIVFNRIFSNPKGVFYLYWSLLVSCITPWLIEAKGGTVRNALSFNNPNQLAYYAILIISMLILINYANTETRNKKAMYWILNIIILIFSNVFVMVSVSRAGLAVIILLDIYLFYKLLGKYKKSFFVPVTMLVVTSIVIMQSDAVFNMKSLNDPTQTQYTQLMTKRFTNYDIKASLYKRILGHVKEQNKFEVILGRGGDKGRFGEISVGDSTTGQEAHNIITEIFDSYGMIGIVLFLGGSIFFFIRLGNFPYKWFFFMSLLLFNMLHNGIRFRCMWVSIALVSIVSFIIYKRQADKYYQLSELQPLNQNCKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1Z0</accession>
    <name>A0A0M2V1Z0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">Riboflavin biosynthesis protein RibBA</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="12">3,4-dihydroxy-2-butanone 4-phosphate synthase</fullName>
                <shortName evidence="12">DHBP synthase</shortName>
                <ecNumber evidence="12">4.1.99.12</ecNumber>
            </recommendedName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="12">GTP cyclohydrolase-2</fullName>
                <ecNumber evidence="12">3.5.4.25</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="12">GTP cyclohydrolase II</fullName>
            </alternativeName>
        </domain>
    </protein>
    <gene>
        <name evidence="12" type="primary">ribBA</name>
        <name evidence="14" type="ORF">BROFUL_00107</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 12">Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.</text>
    </comment>
    <comment type="function">
        <text evidence="12">Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 12">
            <text>D-ribulose 5-phosphate = (2S)-2-hydroxy-3-oxobutyl phosphate + formate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:18457"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:58121"/>
            <dbReference type="ChEBI" id="CHEBI:58830"/>
            <dbReference type="EC" id="4.1.99.12"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11 12">
            <text>GTP + 4 H2O = 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)-pyrimidine + formate + 3 H(+) + 2 phosphate</text>
            <dbReference type="Rhea" id="RHEA:23704"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58614"/>
            <dbReference type="EC" id="3.5.4.25"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="12">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="12">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="12">Binds 2 divalent metal cations per subunit. Magnesium or manganese.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="12">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="12">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4 12">Cofactor biosynthesis; riboflavin biosynthesis; 2-hydroxy-3-oxobutyl phosphate from D-ribulose 5-phosphate: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 12">Cofactor biosynthesis; riboflavin biosynthesis; 5-amino-6-(D-ribitylamino)uracil from GTP: step 1/4.</text>
    </comment>
    <comment type="similarity">
        <text evidence="12">In the C-terminal section; belongs to the GTP cyclohydrolase II family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 12">In the N-terminal section; belongs to the DHBP synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.99.12" evidence="12"/>
    <dbReference type="EC" id="3.5.4.25" evidence="12"/>
    <dbReference type="EMBL" id="LAQJ01000015">
        <property type="protein sequence ID" value="KKO21146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21146">
        <property type="protein sequence ID" value="KKO21146"/>
        <property type="gene ID" value="BROFUL_00107"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.137"/>
    <dbReference type="UniPathway" id="UPA00275">
        <property type="reaction ID" value="UER00399"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008686">
        <property type="term" value="F:3,4-dihydroxy-2-butanone-4-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003935">
        <property type="term" value="F:GTP cyclohydrolase II activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00641">
        <property type="entry name" value="GTP_cyclohydro2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10990">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00179">
        <property type="entry name" value="RibA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00180">
        <property type="entry name" value="RibB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01283">
        <property type="entry name" value="RibBA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017945">
        <property type="entry name" value="DHBP_synth_RibB-like_a/b_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000422">
        <property type="entry name" value="DHBP_synthase_RibB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032677">
        <property type="entry name" value="GTP_cyclohydro_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000926">
        <property type="entry name" value="RibA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036144">
        <property type="entry name" value="RibA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016299">
        <property type="entry name" value="Riboflavin_synth_RibBA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00926">
        <property type="entry name" value="DHBP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00925">
        <property type="entry name" value="GTP_cyclohydro2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142695">
        <property type="entry name" value="SSF142695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55821">
        <property type="entry name" value="SSF55821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00505">
        <property type="entry name" value="ribA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00506">
        <property type="entry name" value="ribB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 12" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="9 12" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="12" id="KW-0456">Lyase</keyword>
    <keyword evidence="12" id="KW-0460">Magnesium</keyword>
    <keyword evidence="12" id="KW-0464">Manganese</keyword>
    <keyword evidence="7 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="8 12" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 12" id="KW-0686">Riboflavin biosynthesis</keyword>
    <keyword evidence="12" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="GTP_cyclohydro2" evidence="13">
        <location>
            <begin position="210"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="region of interest" description="DHBP synthase" evidence="12">
        <location>
            <begin position="1"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="region of interest" description="D-ribulose 5-phosphate binding" evidence="12">
        <location>
            <begin position="27"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="region of interest" description="D-ribulose 5-phosphate binding" evidence="12">
        <location>
            <begin position="140"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="region of interest" description="GTP cyclohydrolase II" evidence="12">
        <location>
            <begin position="202"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; for GTP cyclohydrolase activity" evidence="12">
        <location>
            <position position="338"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile; for GTP cyclohydrolase activity" evidence="12">
        <location>
            <position position="340"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="28"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="32"/>
        </location>
        <ligand>
            <name>D-ribulose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58121"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="143"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="164"/>
        </location>
        <ligand>
            <name>D-ribulose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58121"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <begin position="261"/>
            <end position="265"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="266"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="277"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="279"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="282"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <begin position="304"/>
            <end position="306"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="326"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="361"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="366"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="site" description="Essential for DHBP synthase activity" evidence="12">
        <location>
            <position position="126"/>
        </location>
    </feature>
    <feature type="site" description="Essential for DHBP synthase activity" evidence="12">
        <location>
            <position position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004904"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00005520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00029293"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF00925"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KKO21146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="409" mass="45375" checksum="D66CADE2D12D7B10" modified="2015-11-11" version="1">MQFNTIQEAVEDLKSGKMIILVDDANRENEGDITIAAEKITPEAINFMLTHARGIICLAINAERAEELDLYPMVSNNTSNFQTPFTVSVDARNGITTGVSSKDRTATILTAIDDKATADDLVRPGHVFPLKAQRGGVLVRTGHTEGAVDLTRIAGLKPAAVICEIMTDDGNMAKLPDLKKFSEKHNLKICTIADIIRYRHEQERLIEKRVTVKLPTIYGNFILHLYRSFVDDYLHLALCLGVGSESGNAPSPLHNEPVLVRVHDECLTGDIFGSLRCDCGEQLHNTLKIIQEAGKGILLYMRQEGRGIGLENKLHAYLLQEKGLDTVEANERLGFPADKRDYGIGAQILRDLGVTKMRLLTNNPKKFAALAGYGLEIVERVPIVMEPKAENKEYLRTKKEKLGHIIEKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V296</accession>
    <name>A0A0M2V296_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00041</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000006">
        <property type="protein sequence ID" value="KKO21246.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21246">
        <property type="protein sequence ID" value="KKO21246"/>
        <property type="gene ID" value="BROFUL_00041"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004061">
        <property type="term" value="F:arylformamidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019441">
        <property type="term" value="P:tryptophan catabolic process to kynurenine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007325">
        <property type="entry name" value="KFase/CYL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037175">
        <property type="entry name" value="KFase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31118">
        <property type="entry name" value="PTHR31118"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04199">
        <property type="entry name" value="Cyclase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102198">
        <property type="entry name" value="SSF102198"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21246.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="271" mass="30526" checksum="9C605C2A30FC9EF1" modified="2015-11-11" version="1">MKNILRIVTFGIMLIFWKPCLQAGILEDVMEGKATVIDLTYPLNEKNPYWPVGNYTPFRYEVIANIKRDMVFSGRYSTPEHLGTHLDAPNHFELNRPSVDQIPFEQLVGPAVMIDITDKAGHDHDYALLLSDVEQWEKVHGRIPDGSMVLLHTGWCKRWYNFEDYKNKDTNGSMHFPGYSKEAAIFLVEKRNVKGVGIDTLSGDCGNCSAFQVHHVINGAGKFMLENVANLDKLPPRGFTLIVAPIKIEGGSGGQCRIWALVPQQTTTEKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2E1</accession>
    <name>A0A0M2V2E1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative ppiD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00405</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000054">
        <property type="protein sequence ID" value="KKO20869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20869">
        <property type="protein sequence ID" value="KKO20869"/>
        <property type="gene ID" value="BROFUL_00405"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027304">
        <property type="entry name" value="Trigger_fact/SurA_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109998">
        <property type="entry name" value="SSF109998"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="267"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="267"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="582" mass="67435" checksum="5C3589F0ABF726C5" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPC0</accession>
    <name>A0A0M2UPC0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">PpiC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03345</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000306">
        <property type="protein sequence ID" value="KKO17973.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17973">
        <property type="protein sequence ID" value="KKO17973"/>
        <property type="gene ID" value="BROFUL_03345"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046357">
        <property type="entry name" value="PPIase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000297">
        <property type="entry name" value="PPIase_PpiC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027304">
        <property type="entry name" value="Trigger_fact/SurA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13145">
        <property type="entry name" value="Rotamase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109998">
        <property type="entry name" value="SSF109998"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50198">
        <property type="entry name" value="PPIC_PPIASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0697">Rotamase</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5007777994" description="PpiC domain-containing protein" evidence="2">
        <location>
            <begin position="21"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="domain" description="PpiC" evidence="3">
        <location>
            <begin position="182"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO17973.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="318" mass="35727" checksum="9BDB9D88FDB8F9D0" modified="2015-11-11" version="1">MKILLIVPLFILMFSGGVFFDETVSAAETNANKSPKGEPQIITDKNIVAMVNGQKITKQELYNLLIDTYGEDALDVLIRRTLIRQSAEKEGVRIADAEVEQKLKVLINNEIEGLLRTYRIKDRADLEKELAKAGTSLAKLEEKMAVRMKKQAEVELLAERLMEKTITVTDEDLQKAYEQQYGEKIEASQIVFRTRREAEDTLKKLQAGADFATLAKNESADRISAAREGKMLPFSPKEGIGAEVAHLKVGELSNIIKTDYGYHIMKITGRKPPANKSFKSVKGELEKIVRNQQYKERIGPWLISLVEGASIMKNLSND</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPK8</accession>
    <name>A0A0M2UPK8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03276</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000299">
        <property type="protein sequence ID" value="KKO18053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18053">
        <property type="protein sequence ID" value="KKO18053"/>
        <property type="gene ID" value="BROFUL_03276"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005643890" evidence="1">
        <location>
            <begin position="25"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="180" mass="19860" checksum="FBCD0B61E35E0D1A" modified="2015-11-11" version="1">MKRTFFLAAGMVSMIVSLGQPVFAAWDKPCDKRQILEAYWCDACKDVREFNECSEIGYIWDFAKHRAAGDKTHTDLPTCWACQKIAYSCVNTNCKKYGVCMPAPGACDECGDDITSKKIWARALFKCPKCGKETPEPGKGFATMKGRYAPQIEKAGDCETCGVALEIICTKSGTCPHVTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPP8</accession>
    <name>A0A0M2UPP8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">CRISPR-associated protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_03443</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000315">
        <property type="protein sequence ID" value="KKO17867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17867">
        <property type="protein sequence ID" value="KKO17867"/>
        <property type="gene ID" value="BROFUL_03443"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043571">
        <property type="term" value="P:maintenance of CRISPR repeat elements"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.100.10.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002729">
        <property type="entry name" value="CRISPR-assoc_Cas1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042206">
        <property type="entry name" value="CRISPR-assoc_Cas1_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042211">
        <property type="entry name" value="CRISPR-assoc_Cas1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01867">
        <property type="entry name" value="Cas_Cas1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="SSF56672"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00287">
        <property type="entry name" value="cas1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="8">
        <location>
            <begin position="36"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO17867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="649" mass="75445" checksum="F0CEC13288442903" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQK5</accession>
    <name>A0A0M2UQK5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03391</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17940.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17940">
        <property type="protein sequence ID" value="KKO17940"/>
        <property type="gene ID" value="BROFUL_03391"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="54"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="82"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO17940.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="121" mass="12797" checksum="99992000F7E73A3A" modified="2015-11-11" version="1">MLLSPAYYEKLYQQDKLTVSAGMSLALGAVTAAAMSLGAIRSRSSSTDGVVNDLAVLCFVIGLHAMLIGFAGWFAPLKWPGLMPPITLISFLLGTAALASGLWPGRKFSDSHTNKPSDHTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQT6</accession>
    <name>A0A0M2UQT6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03078</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000285">
        <property type="protein sequence ID" value="KKO18232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18232">
        <property type="protein sequence ID" value="KKO18232"/>
        <property type="gene ID" value="BROFUL_03078"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="177" mass="19845" checksum="2C98111B9E6CC962" modified="2015-11-11" version="1">MLFKVLQTTSQLSLKDLMSTMGKIYRGKFLFLVRSSNRSLFRTSLFSYVASSKVSRRIIALTGHASSQNPQKIQRKASSSYVFGYLRCVSSSAPSMEMHCEGHTLAHNPQATHFSRPSFPNCNSGSPRNRVESFGRSSGYGIVAQVFGLRNRLRVSAKPFNKGKIILSFYYHDKSSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQY4</accession>
    <name>A0A0M2UQY4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 3">Pyrroline-5-carboxylate reductase</fullName>
            <shortName evidence="2">P5C reductase</shortName>
            <shortName evidence="2">P5CR</shortName>
            <ecNumber evidence="2 3">1.5.1.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">PCA reductase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">proC</name>
        <name evidence="7" type="ORF">BROFUL_03259</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>L-proline + NAD(+) = 1-pyrroline-5-carboxylate + 2 H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:14105"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15893"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:60039"/>
            <dbReference type="EC" id="1.5.1.2"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 3">
            <text>L-proline + NADP(+) = 1-pyrroline-5-carboxylate + 2 H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:14109"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15893"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:60039"/>
            <dbReference type="EC" id="1.5.1.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 3">Amino-acid biosynthesis; L-proline biosynthesis; L-proline from L-glutamate 5-semialdehyde: step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2 3">Belongs to the pyrroline-5-carboxylate reductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.5.1.2" evidence="2 3"/>
    <dbReference type="EMBL" id="LAQJ01000298">
        <property type="protein sequence ID" value="KKO18060.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18060">
        <property type="protein sequence ID" value="KKO18060"/>
        <property type="gene ID" value="BROFUL_03259"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4017"/>
    <dbReference type="UniPathway" id="UPA00098">
        <property type="reaction ID" value="UER00361"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004735">
        <property type="term" value="F:pyrroline-5-carboxylate reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055129">
        <property type="term" value="P:L-proline biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01925">
        <property type="entry name" value="P5C_reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028939">
        <property type="entry name" value="P5C_Rdtase_cat_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029036">
        <property type="entry name" value="P5CR_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000304">
        <property type="entry name" value="Pyrroline-COOH_reductase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11645">
        <property type="entry name" value="PTHR11645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03807">
        <property type="entry name" value="F420_oxidored"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14748">
        <property type="entry name" value="P5CR_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000193">
        <property type="entry name" value="Pyrrol-5-carb_rd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00112">
        <property type="entry name" value="proC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00521">
        <property type="entry name" value="P5CR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 3" id="KW-0521">NADP</keyword>
    <keyword evidence="2 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2 3" id="KW-0641">Proline biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="21"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="domain" description="F420_oxidored" evidence="5">
        <location>
            <begin position="50"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="domain" description="P5CR_dimer" evidence="6">
        <location>
            <begin position="208"/>
            <end position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01925"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF03807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF14748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18060.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="316" mass="33803" checksum="17442B5C56520A80" modified="2015-11-11" version="1">MIRQRERKTGKMRCKAKRYRILGNENAKIVASIFISRVFERKRYIMIQEKIGFIGGGRMAEALSRSLIGSGLSDAGRILVSDVLPERCRLLSQETGVKTTQNNKDVVAFADVLIFAVKPPLMNEILNDLKNSITQRHIVISIAAGIPVRFVESRLQAGVRVVRVMPNTPCLVGLSATAFALGQHATPADGQLVSTLFQSVGKVFQMEEKYLDSVTGLSGSGPAYVYLFIEALSDGGVKVGLPRDIATTLAAQTVLGAAKMVLETGQHPAQLKDAVTSPGGTTIEGISALEDGGLRAAVINAVVAATLKSKKLGELS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR64</accession>
    <name>A0A0M2UR64_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02938</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000277">
        <property type="protein sequence ID" value="KKO18362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18362">
        <property type="protein sequence ID" value="KKO18362"/>
        <property type="gene ID" value="BROFUL_02938"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3639"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025666">
        <property type="entry name" value="PQQ-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018391">
        <property type="entry name" value="PQQ_beta_propeller_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002372">
        <property type="entry name" value="PQQ_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011047">
        <property type="entry name" value="Quinoprotein_ADH-like_supfam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01011">
        <property type="entry name" value="PQQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13360">
        <property type="entry name" value="PQQ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13570">
        <property type="entry name" value="PQQ_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00564">
        <property type="entry name" value="PQQ"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50998">
        <property type="entry name" value="SSF50998"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PQQ_3" evidence="1">
        <location>
            <begin position="136"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="domain" description="PQQ_3" evidence="1">
        <location>
            <begin position="176"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13570"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="381" mass="41469" checksum="271D35FD2DA690A7" modified="2015-11-11" version="1">MLKKYIGHLTLPLVFFLSFISGTAALYAQLADTPWPMFRHDLQHTGRSPSVGAQKPVLKWVFQTQGPVASSPAIGEDGTIYFGSKDKKFYAVTRSGTLKWVFETQDEVDSSPAIRKDGAILFGSWDGHLYAVNPDGTLRWKYKSEGGIISSPAIAPDGMIYVGSWDKRLHAITHDGKLQWTQKTADHIASSPAIAPDGMIYFGSGDYYLFAMKPEGKAIWSFGTRYLLDASPLIAPNGNIYIGSEDARLYALRPDGKTAWTADTNYDIDSSAGIDTEGNIYVGSGDNNLYAFTAQGKLKWRFETGASVHSSPAIGSDGTIYVGSRDKKLYAFHPDGRLKWIFETGEAIESSPAIGADGTIYIGSNDGNLYAIGETDTGHSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URH9</accession>
    <name>A0A0M2URH9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02827</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000266">
        <property type="protein sequence ID" value="KKO18472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18472">
        <property type="protein sequence ID" value="KKO18472"/>
        <property type="gene ID" value="BROFUL_02827"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="212"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="58"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="217"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="280" mass="30841" checksum="16972E4F8D34F906" modified="2015-11-11" version="1">MSSCNTKAKAIMVVLVGLFGLLCVGFGVSVTEKYRLQKERVHGLERQLGAGRKEVLKVPELMENLDKAEVAKKEVEDKLTACTAEKDGFVAKASELQKEVDTFGAIKAAVGVQISGLQNTILEQQNKLTELENAKAKLAEQFNAVEADSKGLSEKFELQITDIKRDREDVKNQLIYYTEAKKLADQELAEKQKAITELQKAKEALEAELAKIKQPDASVTPETSSTSGPRFPLTESGNKTAEEIDKTFALLCERVTAPEIALDEVSILLSRMEKALKNLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URK8</accession>
    <name>A0A0M2URK8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02577</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000239">
        <property type="protein sequence ID" value="KKO18698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18698">
        <property type="protein sequence ID" value="KKO18698"/>
        <property type="gene ID" value="BROFUL_02577"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3200"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026350">
        <property type="entry name" value="GxxExxY"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13366">
        <property type="entry name" value="PDDEXK_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04256">
        <property type="entry name" value="GxxExxY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="124" mass="14602" checksum="50D77D20AC1FC9D5" modified="2015-11-11" version="1">MGLEFEKLTDDIIAASIEVHKTLGPGFLEAVYENALSREFETRDIPYKRQWEISIFYHGNEVGKHRLYMFVFDKFVVELKAIKEVTNEHFAIVRSYLKAVRQRHGLILNFAKPILEIKRVIFTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URY1</accession>
    <name>A0A0M2URY1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02494</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18833">
        <property type="protein sequence ID" value="KKO18833"/>
        <property type="gene ID" value="BROFUL_02494"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0129">CBS domain</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CBS" evidence="2">
        <location>
            <begin position="7"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="2">
        <location>
            <begin position="72"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="132" mass="14414" checksum="9D1F1451F7D230A5" modified="2015-11-11" version="1">MKAKEVMNKIVTAAKQNTIGRDLAVKLLSGMYSGLPVVDDKGKVLGIVSEFDLLKAIRSGKALEQVTAGEIMSKNPICVNEDTAVDQIIDLMTKYNIIRVPVTRNDTLVGVISRCDILNSVVEPKFVTFFAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URY8</accession>
    <name>A0A0M2URY8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">(R)-citramalate synthase</fullName>
            <ecNumber evidence="4">2.3.1.182</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_02703</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>acetyl-CoA + H2O + pyruvate = (3R)-citramalate + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:19045"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30934"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="EC" id="2.3.1.182"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-isoleucine biosynthesis; 2-oxobutanoate from pyruvate: step 1/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the alpha-IPM synthase/homocitrate synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.182" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000250">
        <property type="protein sequence ID" value="KKO18602.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18602">
        <property type="protein sequence ID" value="KKO18602"/>
        <property type="gene ID" value="BROFUL_02703"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3343"/>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00066"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043714">
        <property type="term" value="F:(R)-citramalate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003852">
        <property type="term" value="F:2-isopropylmalate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009098">
        <property type="term" value="P:leucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013709">
        <property type="entry name" value="2-isopropylmalate_synth_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002034">
        <property type="entry name" value="AIPM/Hcit_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005675">
        <property type="entry name" value="Citramal_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036230">
        <property type="entry name" value="LeuA_allosteric_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000891">
        <property type="entry name" value="PYR_CT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43538">
        <property type="entry name" value="PTHR43538"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00682">
        <property type="entry name" value="HMGL-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08502">
        <property type="entry name" value="LeuA_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00917">
        <property type="entry name" value="LeuA_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110921">
        <property type="entry name" value="SSF110921"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00977">
        <property type="entry name" value="citramal_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00815">
        <property type="entry name" value="AIPM_HOMOCIT_SYNTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50991">
        <property type="entry name" value="PYR_CT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0412">Isoleucine biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pyruvate carboxyltransferase" evidence="10">
        <location>
            <begin position="4"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004743"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003523"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO18602.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="524" mass="58217" checksum="FA9170E2EA8965CC" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US57</accession>
    <name>A0A0M2US57_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">Lon protease</fullName>
            <ecNumber evidence="5 6">3.4.21.53</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">ATP-dependent protease La</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">lon</name>
        <name evidence="14" type="ORF">BROFUL_02804</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5 6 9">
            <text>Hydrolysis of proteins in presence of ATP.</text>
            <dbReference type="EC" id="3.4.21.53"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="5 6">Homohexamer. Organized in a ring with a central cavity.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 5 6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="induction">
        <text evidence="5">By heat shock.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 6 9 10">Belongs to the peptidase S16 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.53" evidence="5 6"/>
    <dbReference type="EMBL" id="LAQJ01000265">
        <property type="protein sequence ID" value="KKO18480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18480">
        <property type="protein sequence ID" value="KKO18480"/>
        <property type="gene ID" value="BROFUL_02804"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3468"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034605">
        <property type="term" value="P:cellular response to heat"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006515">
        <property type="term" value="P:protein quality control for misfolded or incompletely synthesized proteins"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.130.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01973">
        <property type="entry name" value="lon_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027543">
        <property type="entry name" value="Lon_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004815">
        <property type="entry name" value="Lon_bac/euk-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008269">
        <property type="entry name" value="Lon_proteolytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027065">
        <property type="entry name" value="Lon_Prtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003111">
        <property type="entry name" value="Lon_prtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046336">
        <property type="entry name" value="Lon_prtase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008268">
        <property type="entry name" value="Peptidase_S16_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10046">
        <property type="entry name" value="PTHR10046"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05362">
        <property type="entry name" value="Lon_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02190">
        <property type="entry name" value="LON_substr_bdg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001174">
        <property type="entry name" value="Lon_proteas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00464">
        <property type="entry name" value="LON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="SSF88697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00763">
        <property type="entry name" value="lon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51787">
        <property type="entry name" value="LON_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51786">
        <property type="entry name" value="LON_PROTEOLYTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01046">
        <property type="entry name" value="LON_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="evidence at transcript level"/>
    <keyword evidence="5 6 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 6 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 5 6" id="KW-0645">Protease</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5 6" id="KW-0720">Serine protease</keyword>
    <keyword evidence="4 5" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="Lon N-terminal" evidence="13">
        <location>
            <begin position="37"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="domain" description="Lon proteolytic" evidence="12">
        <location>
            <begin position="618"/>
            <end position="799"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="11">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="active site" evidence="5 7 9">
        <location>
            <position position="705"/>
        </location>
    </feature>
    <feature type="active site" evidence="5 7 9">
        <location>
            <position position="748"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5 8">
        <location>
            <begin position="382"/>
            <end position="389"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01973"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR001174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR001174-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR001174-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000591"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KKO18480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="813" mass="90514" checksum="9C5A1463AA0933E5" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USA5</accession>
    <name>A0A0M2USA5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03442</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000315">
        <property type="protein sequence ID" value="KKO17866.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17866">
        <property type="protein sequence ID" value="KKO17866"/>
        <property type="gene ID" value="BROFUL_03442"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17866.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="126" mass="13828" checksum="CA5080979713ED22" modified="2015-11-11" version="1">MIIACCYASMVNPVGWYSIAIFPIFHPYGAKYAGVLFSIIMTSLRDFPVLQFSLNSYVLLYVPCPLKDPKHVKGILQGIGKNEIGLEFRLAYGYDRPDIACGVGMGYKKTVPALGLMKEHGGACCL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USB4</accession>
    <name>A0A0M2USB4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02800</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000264">
        <property type="protein sequence ID" value="KKO18530.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18530">
        <property type="protein sequence ID" value="KKO18530"/>
        <property type="gene ID" value="BROFUL_02800"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="110"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="277"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="311"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="352"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="167"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="235"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="178"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18530.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="385" mass="43323" checksum="936C89D5D7BACC7B" modified="2015-11-11" version="1">MAVEFEVLNAEGKRLKDDITVQRRKLETVSLNYDEFKKNTETTLKDLDDKIDALLKGPLLSKDTWDTHPQQDDVIRKVRNDLHDNLETRKVSIERVVNLLVPDVKIPKRLTIIGITILLLMIGGYVALHKYIDTPTYKKENGEKLFAAIGKLKAHILNPEVKLNDMPDLPDFNPLTAKKGPRSDDPEKKEKGNDATGPATAPSQDAWALVFAERISSFNGFVSVVKAGTTTGTGSVIVKSQVDKIKEELEKIEKDALIFSKNDGFFWITGYWRWLEIVFWGEFGVIVGILAWICTQAEVGGYTKGKYEKELPWYIAEMVMGPVIVVAVFFLLKQFVGTFIAGVAEEDVRSSIYLTLGISFALGLFIRRTLGVFNFIKDKLPLPKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USC1</accession>
    <name>A0A0M2USC1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Transcription-repair-coupling factor</fullName>
            <shortName evidence="8">TRCF</shortName>
            <ecNumber evidence="8">3.6.4.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">mfd</name>
        <name evidence="11" type="ORF">BROFUL_02769</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">In the C-terminal section; belongs to the helicase family. RecG subfamily.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">In the N-terminal section; belongs to the UvrB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.-" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000262">
        <property type="protein sequence ID" value="KKO18535.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18535">
        <property type="protein sequence ID" value="KKO18535"/>
        <property type="gene ID" value="BROFUL_02769"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3427"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000716">
        <property type="term" value="P:transcription-coupled nucleotide-excision repair, DNA damage recognition"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00969">
        <property type="entry name" value="TRCF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036101">
        <property type="entry name" value="CarD-like/TRCF_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003711">
        <property type="entry name" value="CarD-like/TRCF_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004576">
        <property type="entry name" value="Mfd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037235">
        <property type="entry name" value="TRCF-like_C_D7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005118">
        <property type="entry name" value="TRCF_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041471">
        <property type="entry name" value="UvrB_inter"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02559">
        <property type="entry name" value="CarD_CdnL_TRCF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03461">
        <property type="entry name" value="TRCF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17757">
        <property type="entry name" value="UvrB_inter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01058">
        <property type="entry name" value="CarD_TRCF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00982">
        <property type="entry name" value="TRCF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141259">
        <property type="entry name" value="SSF141259"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143517">
        <property type="entry name" value="SSF143517"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00580">
        <property type="entry name" value="mfd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 8" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7 8" id="KW-0234">DNA repair</keyword>
    <keyword evidence="6 8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-0347">Helicase</keyword>
    <keyword evidence="3 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="9">
        <location>
            <begin position="582"/>
            <end position="743"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="10">
        <location>
            <begin position="764"/>
            <end position="918"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00969"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO18535.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1100" mass="126094" checksum="791291C3A8750FEE" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USE8</accession>
    <name>A0A0M2USE8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Aminodeoxyfutalosine synthase</fullName>
            <shortName evidence="6">AFL synthase</shortName>
            <shortName evidence="6">Aminofutalosine synthase</shortName>
            <ecNumber evidence="6">2.5.1.120</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Menaquinone biosynthetic enzyme MqnE</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">mqnE</name>
        <name evidence="8" type="ORF">BROFUL_02748</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3-[(1-carboxyvinyl)oxy]benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>3-[(1-carboxyvinyl)-oxy]benzoate + H2O + S-adenosyl-L-methionine = 6-amino-6-deoxyfutalosine + H(+) + hydrogencarbonate + L-methionine</text>
            <dbReference type="Rhea" id="RHEA:33075"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:64286"/>
            <dbReference type="ChEBI" id="CHEBI:76981"/>
            <dbReference type="EC" id="2.5.1.120"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="6">Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Quinol/quinone metabolism; menaquinone biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the radical SAM superfamily. MqnE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.120" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000256">
        <property type="protein sequence ID" value="KKO18560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18560">
        <property type="protein sequence ID" value="KKO18560"/>
        <property type="gene ID" value="BROFUL_02748"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3398"/>
    <dbReference type="UniPathway" id="UPA00079"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102573">
        <property type="term" value="F:aminodeoxyfutalosine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009234">
        <property type="term" value="P:menaquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00993">
        <property type="entry name" value="MqnE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045567">
        <property type="entry name" value="CofH/MnqC-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034405">
        <property type="entry name" value="F420"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020050">
        <property type="entry name" value="FO_synthase_su2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022432">
        <property type="entry name" value="MqnE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43076">
        <property type="entry name" value="PTHR43076"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19288">
        <property type="entry name" value="CofH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00343">
        <property type="entry name" value="aminofutalosine_synthase_(mqnE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03700">
        <property type="entry name" value="mena_SCO4494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00423">
        <property type="entry name" value="TIGR00423"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 6" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="4 6" id="KW-0408">Iron</keyword>
    <keyword evidence="5 6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="6" id="KW-0474">Menaquinone biosynthesis</keyword>
    <keyword evidence="3 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Radical SAM core" evidence="7">
        <location>
            <begin position="24"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="38"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="42"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="45"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00993"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="341" mass="38206" checksum="A52511493A5CB994" modified="2015-11-11" version="1">MSNDILSIGHTANIVREWKNGNKAYYITNRHINYSNICKNRCKFCAFSREKESPDSYEMALDEILEKALAAAEGGATELHIVGGLHPDLPFDFYVKMIREIHESCPDVHIQAFTAIEIEHLSQVARLSVRQTLMALKEAGLGSLPGGGAEVFSPKIREHLCPEKLSGEGWLQVMRDAHTLGLRSNATMLYGHVETPEDRISHLIKLRELQDETGGFLTFIPLAFHPKNTEMSDSSGTTALLDLKVIAISRLMLDNFDHIKAYWIMLGIKLSQVALGFGVDDIDGTVQEEKITHAAGAETPEALSIREIIKLIEEAGREPVERDTLYNPVKRKQRNFMLQQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USJ8</accession>
    <name>A0A0M2USJ8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Succinate dehydrogenase subunit C</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">sdhC</name>
        <name evidence="9" type="ORF">BROFUL_02219</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
        <text evidence="7">The heme is bound between the two transmembrane subunits.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19038">
        <property type="protein sequence ID" value="KKO19038"/>
        <property type="gene ID" value="BROFUL_02219"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045281">
        <property type="term" value="C:succinate dehydrogenase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000104">
        <property type="term" value="F:succinate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039023">
        <property type="entry name" value="SdhC_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034804">
        <property type="entry name" value="SQR/QFR_C/D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014314">
        <property type="entry name" value="Succ_DH_cytb556"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000701">
        <property type="entry name" value="SuccDH_FuR_B_TM-su"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR41910">
        <property type="entry name" value="PTHR41910"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01127">
        <property type="entry name" value="Sdh_cyt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000178">
        <property type="entry name" value="SDH_cyt_b560"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81343">
        <property type="entry name" value="SSF81343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02970">
        <property type="entry name" value="succ_dehyd_cytB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 7" id="KW-0349">Heme</keyword>
    <keyword evidence="5 7" id="KW-0408">Iron</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="21"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="69"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="103"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="7">
        <location>
            <position position="81"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <note>ligand shared with second transmembrane subunit</note>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000178-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="124" mass="14353" checksum="B16F33AD20C56233" modified="2015-11-11" version="1">MNIQKIKEGYKDFVKNRNMGMYAFWLHRITGIVITVFLFLHIWTLSAVFRGKDAYDYAISKFDTKFGYLFQYVLLLIVAIHLINGLRITVVDFCGVTRSQKKLLWISLFVLILIAAVGVMTVLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USJ9</accession>
    <name>A0A0M2USJ9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Mannose-1-phosphate guanylyltransferase</fullName>
            <ecNumber evidence="3">2.7.7.13</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_03338</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>alpha-D-mannose 1-phosphate + GTP + H(+) = diphosphate + GDP-alpha-D-mannose</text>
            <dbReference type="Rhea" id="RHEA:15229"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:57527"/>
            <dbReference type="ChEBI" id="CHEBI:58409"/>
            <dbReference type="EC" id="2.7.7.13"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the mannose-6-phosphate isomerase type 2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.13" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000306">
        <property type="protein sequence ID" value="KKO17966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17966">
        <property type="protein sequence ID" value="KKO17966"/>
        <property type="gene ID" value="BROFUL_03338"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4111"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004475">
        <property type="term" value="F:mannose-1-phosphate guanylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000271">
        <property type="term" value="P:polysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006375">
        <property type="entry name" value="Man1P_GuaTrfase/Man6P_Isoase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001538">
        <property type="entry name" value="Man6P_isomerase-2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005835">
        <property type="entry name" value="NTP_transferase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01050">
        <property type="entry name" value="MannoseP_isomer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00483">
        <property type="entry name" value="NTP_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01479">
        <property type="entry name" value="GMP_PMI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NTP_transferase" evidence="6">
        <location>
            <begin position="5"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="domain" description="MannoseP_isomer" evidence="7">
        <location>
            <begin position="315"/>
            <end position="465"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001083"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU004190"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO17966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="480" mass="54038" checksum="F9FBD22493C6C3EB" modified="2015-11-11" version="1">MKIFILAGGGGERLWPLSRNNFPKQFLHLNGSMSLLQQTVDRFLGAVSPEDVIVITNHNYQFHVSSALNSLPGMNGSGSGAHMVLEPLGRNTAPAIALGMNYCREKLGCTEDEIIFLSPSDHIIKPPEAFAEQVKQAEEIAKKGYLVTFGIRPDKPETGFGYLKFGAQLSGNGTQKFFKVERFAEKPDRDTAKRYIREGNYYWNSGMFAFRIRTMTEELQRYAPEIMKLYHLGYEEMLSQFEQMPNISIDYAVMEKSDKVAALPFELYWNDVGSWDSLFDILDKDGNGNVFQGDVMAIDTKDSFLAGKKRLIAAVGLENCLVVETDDAILIAKKGEAQKVKDIVKKLKEHARSEAVEHVTTYRPWGNYTVLENGPRYKIKRIVVNPNEKLSLQMHYHRSEHWVVVKGSAKVTTGGKESFIHENESAYIPKSTMHRLENPGKIPLEIIEVQNGEYLGEDDIVRFDDVYGRTGGDGNPSHPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USL3</accession>
    <name>A0A0M2USL3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03329</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000305">
        <property type="protein sequence ID" value="KKO17986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17986">
        <property type="protein sequence ID" value="KKO17986"/>
        <property type="gene ID" value="BROFUL_03329"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="111" mass="12661" checksum="6108D62978014E6E" modified="2015-11-11" version="1">MEISATASYLHTAGKDTIATLSMLRRVIKCLIIVLIRRMLSFSNIEALNGQLNVCSIMRRLISIFSRETNCGYLFCTLFHGNTIYAAQYFISHGEMLHGKRGKIQNFMPHF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USN5</accession>
    <name>A0A0M2USN5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">LamGL domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02696</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000248">
        <property type="protein sequence ID" value="KKO18610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18610">
        <property type="protein sequence ID" value="KKO18610"/>
        <property type="gene ID" value="BROFUL_02696"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3335"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014755">
        <property type="entry name" value="Cu-Rt/internalin_Ig-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006558">
        <property type="entry name" value="LamG-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032812">
        <property type="entry name" value="SbsA_Ig"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13205">
        <property type="entry name" value="Big_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00560">
        <property type="entry name" value="LamGL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="SSF49899"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="LamGL" evidence="2">
        <location>
            <begin position="213"/>
            <end position="363"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="571" mass="61542" checksum="70558322CC40AF9B" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USN9</accession>
    <name>A0A0M2USN9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02408</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000231">
        <property type="protein sequence ID" value="KKO18862.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18862">
        <property type="protein sequence ID" value="KKO18862"/>
        <property type="gene ID" value="BROFUL_02408"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18862.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="268" mass="31025" checksum="BAC28690024E3C1A" modified="2015-11-11" version="1">MIHNTNTTIICPCNDGESRLIIEIAKKLSFDVRISAQGWGAVLSREPDETFADLKRHVIVVEMPDVLKEKELQEKGHNLFVLDHHQYPHLKRLYPVSALEQFACLISYTLNRWQMGVALNDRGYIPALRKQGYSEDEMLEIRQYDLEAQGYKPEYFETLRRDYLKGCNRGQDLYVVETNCEKTSYVSDLHFFENEKRILCMDLVVFTVDAENTMQKINFYGSPARARALQKRFGGYSGGDEKVSLFWGTEITTPMTREAFLRFLSPGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USR3</accession>
    <name>A0A0M2USR3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Adenine-specific DNA methylase</fullName>
            <ecNumber evidence="6">2.1.1.72</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">dam_2</name>
        <name evidence="6" type="ORF">BROFUL_03282</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the N(4)/N(6)-methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.72" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000300">
        <property type="protein sequence ID" value="KKO18036.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18036">
        <property type="protein sequence ID" value="KKO18036"/>
        <property type="gene ID" value="BROFUL_03282"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4046"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008170">
        <property type="term" value="F:N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009007">
        <property type="term" value="F:site-specific DNA-methyltransferase (adenine-specific) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002941">
        <property type="entry name" value="DNA_methylase_N4/N6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01555">
        <property type="entry name" value="N6_N4_Mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N6_N4_Mtase" evidence="5">
        <location>
            <begin position="154"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18036.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="412" mass="47456" checksum="BBE7DE0530B013A3" modified="2015-11-11" version="1">MARKRTTETTGKPIEQYEHKDKERLNNPPVGLVDAHTDNGGKKRRKYQYDPHLDPQLQWAGKAEHTSFEVPTVSLHVHERIDPKRIIETVKMSPAGEGAGGGRQLSLFDTHKKPLREAIEFYKHKEDWSNRLVAGDSLLVMNSLLEKEGMGGKVQMVYFDPPYGIKYGSNFQPFVNKRDVKDGKDEDLTAEPEMIKAFRDTWELGIHSYLTYLRDRLLLVRELLHESGSVFVQISDENVHLVRNLMDEVFGVENFISIITFRKTGSKGSAYLDSVCDYIIFYAKSEKNLRYRQLYSKENFNPLIHISYSQVMDEKGNIRNLTEEEKNLGKKLSDKLKPFQTVSITSQDPNENTNEPVVIDGVEYWCPKNRHWSVNPKLIPNAVKKGYVKAFGNSLRRLSFYDEEPGRLVTNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USR8</accession>
    <name>A0A0M2USR8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02649</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000241">
        <property type="protein sequence ID" value="KKO18650.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18650">
        <property type="protein sequence ID" value="KKO18650"/>
        <property type="gene ID" value="BROFUL_02649"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18650.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="101" mass="11554" checksum="E1403F6E6C3B0D38" modified="2015-11-11" version="1">MQNDDTLDNTHLIRFAGRFSRRIHAYAKKNGIPLIHCQRDECKHEIAEQYIPAEPTFCSIFCILVGRAPVFEVKRFANGGMDITKKPPFLCESVFVPYHGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USU1</accession>
    <name>A0A0M2USU1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative phage protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02626</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18675.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18675">
        <property type="protein sequence ID" value="KKO18675"/>
        <property type="gene ID" value="BROFUL_02626"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3258"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011101">
        <property type="entry name" value="DUF5131"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07505">
        <property type="entry name" value="DUF5131"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18675.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="187" mass="21645" checksum="591D2EF5A477EBD2" modified="2015-11-11" version="1">MASSKIEWTESTWNPVTGCTKISAGCKNCYAERLAKRLKAMGQPNYKNGFKLTLHEQVLEYPLQWKKPQTIFVNSMSDLFHEEIPDEFIFKVFDVMKRAYWHRFQILTKRSVRLKEMASLLDWPENVWMGVSVENLLAKYRIDDLKAVPAFIRFLSFEPLLSPLGHLVLGDIHWVIVGGESGQRPGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT77</accession>
    <name>A0A0M2UT77_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02481</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18820">
        <property type="protein sequence ID" value="KKO18820"/>
        <property type="gene ID" value="BROFUL_02481"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="321"/>
            <end position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18820.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="346" mass="40123" checksum="C4961909A9A322F2" modified="2015-11-11" version="1">MGVNSAVKGTLVSFLVGITELNIDTSEIVDIKKGKSSPSYPDVIPKQMVVKVEKKTLESREVNFLVKFCPPGIIIVEASVDLEDILGVHVFDIKRSLLIECRTILWEYHCDPYFDEEYSVHCVSDYRGDPEDIISEHEESIAGLLKTERIPLDEEEIHATLKFNIKYSKDDITIVEWDGAFVFDPRGDFASNIELFEIANLQLLKLRVLEHELENRLEKAARLLQETTLRRIPWLSSREIRYSMREIIQIRTESILEFAATERNINLIGDWYSARLFDLTTKKLHLEAWRTNINQTLDALEDIYSMISEKFSMSFSTTLEFIIAFGWFALLVGYFLLFFLELVYKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTM2</accession>
    <name>A0A0M2UTM2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NTP_transf_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02972</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000280">
        <property type="protein sequence ID" value="KKO18336.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18336">
        <property type="protein sequence ID" value="KKO18336"/>
        <property type="gene ID" value="BROFUL_02972"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3676"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002934">
        <property type="entry name" value="Polymerase_NTP_transf_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01909">
        <property type="entry name" value="NTP_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NTP_transf_2" evidence="1">
        <location>
            <begin position="11"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18336.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="96" mass="11248" checksum="93832E0759ACBC8A" modified="2015-11-11" version="1">MGRDDVLAILRDFKQRFAEKYGILEIGIFGSTARDDAREDSDVDICIKTKTPDPFAIVHIKEEIESRIRKHVDIVRIREKMNPFLRERIEKEGIYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTM4</accession>
    <name>A0A0M2UTM4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02145</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19162">
        <property type="protein sequence ID" value="KKO19162"/>
        <property type="gene ID" value="BROFUL_02145"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_11" evidence="1">
        <location>
            <begin position="133"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="395" mass="45026" checksum="61F41952213E04BC" modified="2015-11-11" version="1">MNNLGFRPVQTQSTSWPHDPFLSNVTAIAVKSHNVSLSEQVKAADELLWESTVASTEQPTYEVWKQQLRSLLSDKSEMASQVPLGSQLEQVAHVFQQSKSEQSIQEIHDFNQRERDRWVQLKAVTVPAGSRVLDIGAGTCPYRALFAHGDYKTHDFKRYTGEKLGGTTEYGKIDYESDICAIPVPDNSFDVIVCTEVLEHTPEPIEALREMSRILKEGGRLFLTAPLGSGLHQLPYHYYGGFTPEWYKHFCSKFGLYVSEISPNGGFFKLLAQECARVAWTLPQHQHLHGNNVELIKNLFGEWIPRYLFELEKKHGIDQFTVGYHVEAVKVRDIDTVQKLIENDLQNVNLYLEAARSLLNQGEYLPARRYVEDALELNHSNTTLIEMHQQLVNKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTW9</accession>
    <name>A0A0M2UTW9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01785</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000186">
        <property type="protein sequence ID" value="KKO19508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19508">
        <property type="protein sequence ID" value="KKO19508"/>
        <property type="gene ID" value="BROFUL_01785"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="171" mass="19071" checksum="642CEF196BAE11DC" modified="2015-11-11" version="1">MVKIVTTKNMKKTNAKQVSGRPKIAVSKDKGVKEIEKQIKTFTADFSSLIKSFDAVAKKIDTLGKRIEAVEKLSASSEKILQANKKQMESALKNFQETGKRMESGLKDLTAKSKSMDDVVKKVYDIEKNLEGIKSSMVSMGDVISDMEDTNEDVLDIAEQIQDSLEEDEIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTX6</accession>
    <name>A0A0M2UTX6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Murein hydrolase activator NlpD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">nlpD</name>
        <name evidence="3" type="ORF">BROFUL_02023</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000206">
        <property type="protein sequence ID" value="KKO19267.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19267">
        <property type="protein sequence ID" value="KKO19267"/>
        <property type="gene ID" value="BROFUL_02023"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00118">
        <property type="entry name" value="LysM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.70.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011055">
        <property type="entry name" value="Dup_hybrid_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018392">
        <property type="entry name" value="LysM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036779">
        <property type="entry name" value="LysM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016047">
        <property type="entry name" value="Peptidase_M23"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01476">
        <property type="entry name" value="LysM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01551">
        <property type="entry name" value="Peptidase_M23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00257">
        <property type="entry name" value="LysM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51261">
        <property type="entry name" value="SSF51261"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51782">
        <property type="entry name" value="LYSM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LysM" evidence="2">
        <location>
            <begin position="38"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19267.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="234" mass="25168" checksum="EB4A21B4B6307C5D" modified="2015-11-11" version="1">MQPKKTETPAPLKSEMKSLEDQQSRKTYQPPIQSEKATYYVVKKGDTLWRISKNYGVSVNAIRGANHATNTKDLKVGQKLIIPVSGKSQTSSPLSSRSSYVSIKDTAGSVSSRGFIWPVKGRIVSPFGEVRNGAKSSGIHILPEAGQKVVAAKKGTVEAISNAGDGMSVIVIKHDDGIRTIYESCGCPAVGEGSYVERGQPIADVDSANADKSQGITFKIYVKDKPVNPKNYLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTY0</accession>
    <name>A0A0M2UTY0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Methyl-accepting chemotaxis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">mcp_1</name>
        <name evidence="10" type="ORF">BROFUL_01767</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000184">
        <property type="protein sequence ID" value="KKO19518.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19518">
        <property type="protein sequence ID" value="KKO19518"/>
        <property type="gene ID" value="BROFUL_01767"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2191"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033479">
        <property type="entry name" value="dCache_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004089">
        <property type="entry name" value="MCPsignal_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02743">
        <property type="entry name" value="dCache_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00015">
        <property type="entry name" value="MCPsignal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00283">
        <property type="entry name" value="MA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50111">
        <property type="entry name" value="CHEMOTAXIS_TRANSDUC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0807">Transducer</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="342"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="domain" description="Methyl-accepting transducer" evidence="9">
        <location>
            <begin position="382"/>
            <end position="611"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="406"/>
            <end position="426"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="663"/>
            <end position="719"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="663"/>
            <end position="694"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19518.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="719" mass="78426" checksum="DE944DCE8CB6A481" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUH1</accession>
    <name>A0A0M2UUH1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03168</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18119.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18119">
        <property type="protein sequence ID" value="KKO18119"/>
        <property type="gene ID" value="BROFUL_03168"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016903">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.920.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019752">
        <property type="entry name" value="Pyrv/ketoisovalerate_OxRed_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002869">
        <property type="entry name" value="Pyrv_flavodox_OxRed_cen"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01558">
        <property type="entry name" value="POR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53323">
        <property type="entry name" value="SSF53323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="2">
        <location>
            <begin position="1"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="3">
        <location>
            <begin position="203"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18119.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="290" mass="32325" checksum="6A5FFF71FB01F903" modified="2015-11-11" version="1">MKKRLGDQDCIYLVGKEGDTVVSFLFAWISNGVGNIHWIGVAPEHRKKGYGDKLLEEAIKRFTEKGCYEAKLFTYPAEKAANDLFQKHGFKETAFVDSRFFGVNIILMVRKITSVPEEHRSKKIVLAGEAGQGIKLMAHALANILAKLGKEVALNLVYDAAVRGGNIHAEIVYSDAPIDVPFFEEADIGLQLSKTLNLAIRAKHMLIESSACDAECKRCEIKCPASDRIPFEKLAVEQFSSPIFVNMIALGRLLSKIGINIETVNFASEFPSQFLNENIEAIRYGYTYKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUJ7</accession>
    <name>A0A0M2UUJ7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">S23 ribosomal protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02004</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000202">
        <property type="protein sequence ID" value="KKO19290.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19290">
        <property type="protein sequence ID" value="KKO19290"/>
        <property type="gene ID" value="BROFUL_02004"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2495"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1440.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012657">
        <property type="entry name" value="23S_rRNA-intervening_sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036583">
        <property type="entry name" value="23S_rRNA_IVS_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05635">
        <property type="entry name" value="23S_rRNA_IVP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158446">
        <property type="entry name" value="SSF158446"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02436">
        <property type="entry name" value="TIGR02436"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19290.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="181" mass="20237" checksum="A740C55099454EA3" modified="2015-11-11" version="1">MTDNKESPLIPPHGGYRELQSYKMSEIVYDATIVFCDRFIDRRSRTHDQMVQAARSGKQNIAEGSMASGTSKKTELKLVGVARASLEELLLDFQDYLRQRKLPLWGKEHEQALAVRKLAHSKIGLMRLIRPIWSFASGSGGKHHDLPDSPDKLPARPAVAGIGKDLSERGWVHRKALPGTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUL9</accession>
    <name>A0A0M2UUL9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02638</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18686">
        <property type="protein sequence ID" value="KKO18686"/>
        <property type="gene ID" value="BROFUL_02638"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004016">
        <property type="term" value="F:adenylate cyclase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009190">
        <property type="term" value="P:cyclic nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035556">
        <property type="term" value="P:intracellular signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07302">
        <property type="entry name" value="CHD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1230">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001054">
        <property type="entry name" value="A/G_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="281" mass="32770" checksum="562395430983CD25" modified="2015-11-11" version="1">MVTFSTEKAKRIVMFCDLRNSTDILMDFEQGVYSGIESSGEKAFTYADFIMDVHETSYKELYLGHEKTYAEIYGDGVMGIFPEDNAKYILENIYRLSKRMRVYNDPQGVGVLKPRIDIGFGITAGDVSFIYYPLDKRNHPVGRCVHEAARIEGLSKLYDARVLISDRFFKFAEGYISTDERFSYRFIDRIILKGFREPITLFEFLMDNDPRFETKKNSQKEYSEAYSRYCRKEWATAAELFQTIYQEYELGIGSVMAKRCEILSKSPPSPDWNGIWKMKDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUS8</accession>
    <name>A0A0M2UUS8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 3">Methionine aminopeptidase</fullName>
            <shortName evidence="2">MAP</shortName>
            <shortName evidence="2">MetAP</shortName>
            <ecNumber evidence="2 3">3.4.11.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Peptidase M</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">map</name>
        <name evidence="5" type="ORF">BROFUL_01902</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 2">Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 3">
            <text>Release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.</text>
            <dbReference type="EC" id="3.4.11.18"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 3">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
        <cofactor evidence="2 3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <cofactor evidence="2 3">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <cofactor evidence="2 3">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
        <text evidence="2 3">Binds 2 divalent metal cations per subunit. Has a high-affinity and a low affinity metal-binding site. The true nature of the physiological cofactor is under debate. The enzyme is active with cobalt, zinc, manganese or divalent iron ions. Most likely, methionine aminopeptidases function as mononuclear Fe(2+)-metalloproteases under physiological conditions, and the catalytically relevant metal-binding site has been assigned to the histidine-containing high-affinity site.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.11.18" evidence="2 3"/>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19375">
        <property type="protein sequence ID" value="KKO19375"/>
        <property type="gene ID" value="BROFUL_01902"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2371"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070006">
        <property type="term" value="F:metalloaminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046914">
        <property type="term" value="F:transition metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070084">
        <property type="term" value="P:protein initiator methionine removal"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01086">
        <property type="entry name" value="MetAP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01974">
        <property type="entry name" value="MetAP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036005">
        <property type="entry name" value="Creatinase/aminopeptidase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000994">
        <property type="entry name" value="Pept_M24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001714">
        <property type="entry name" value="Pept_M24_MAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002467">
        <property type="entry name" value="Pept_M24A_MAP1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00557">
        <property type="entry name" value="Peptidase_M24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00599">
        <property type="entry name" value="MAPEPTIDASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55920">
        <property type="entry name" value="SSF55920"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00500">
        <property type="entry name" value="met_pdase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00680">
        <property type="entry name" value="MAP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 5" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 3" id="KW-0645">Protease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_M24" evidence="4">
        <location>
            <begin position="1"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="65"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="82"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="93"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="156"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="163"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="192"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002521"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003653"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="238" mass="26353" checksum="7E85F870CB6E1428" modified="2015-11-11" version="1">MRMAGKITADALRLASEIAQEDITTDYLNTEIERYIVSKGGIPVFKGYRGFPKSICTSINEEVVHGIPGSRRLKNGDILSVDVGVSYRKYVADAAVTIPIGKITNDAQRLVDVCENSLQRAISVIKSGEKLSRISKTIQDYVEMNDYTVVRNYTGHGIGRCMHEDPQVPNFVSKALLEADEILVQGMTIAIEPMICMGKYDTEVLNNKWTVVTKDRKLSAHFEHTVVVTDDGADILTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUV6</accession>
    <name>A0A0M2UUV6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01867</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000194">
        <property type="protein sequence ID" value="KKO19405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19405">
        <property type="protein sequence ID" value="KKO19405"/>
        <property type="gene ID" value="BROFUL_01867"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2329"/>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd11646">
        <property type="entry name" value="Precorrin_3B_C17_MT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014776">
        <property type="entry name" value="4pyrrole_Mease_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006363">
        <property type="entry name" value="Cbl_synth_CobJ/CibH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="SSF53790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01466">
        <property type="entry name" value="cobJ_cbiH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 6" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TP_methylase" evidence="5">
        <location>
            <begin position="1"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19405.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="238" mass="26033" checksum="397A2DD9FDE400ED" modified="2015-11-11" version="1">MVGIGPGARNEISQRALDALKNSETIVGYKLYVDLVKDIIGTKQVIATAMRKEIERVEIAIQEALSGKTVSIISSGDPGVYGMAGLVLEVIAQKNIELSLEIISGIPAANAAAAVLGAPLMHDYAVISLSDLLTPWETIEKRVKCAAEADYVIVLYNPKSAQREWQIEKTAHIIRQHKPPTTPVGIVKDASRENESVIITTLDKMISCPIDMTTVIIIGNSTTFRYRNYMITKRGYHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV10</accession>
    <name>A0A0M2UV10_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">50S ribosomal protein L35</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rpmI</name>
        <name evidence="7" type="ORF">BROFUL_01401</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4 5">Belongs to the bacterial ribosomal protein bL35 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000145">
        <property type="protein sequence ID" value="KKO19888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19888">
        <property type="protein sequence ID" value="KKO19888"/>
        <property type="gene ID" value="BROFUL_01401"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.410.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00514">
        <property type="entry name" value="Ribosomal_L35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021137">
        <property type="entry name" value="Ribosomal_L35"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018265">
        <property type="entry name" value="Ribosomal_L35_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001706">
        <property type="entry name" value="Ribosomal_L35_non-mt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037229">
        <property type="entry name" value="Ribosomal_L35_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01632">
        <property type="entry name" value="Ribosomal_L35p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00064">
        <property type="entry name" value="RIBOSOMALL35"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143034">
        <property type="entry name" value="SSF143034"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00001">
        <property type="entry name" value="rpmI_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00936">
        <property type="entry name" value="RIBOSOMAL_L35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="19"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="6">
        <location>
            <begin position="19"/>
            <end position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000568"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="65" mass="7180" checksum="599DEDB70E04577E" modified="2015-11-11" version="1">MPKLKTHKGLKKRIKISAKGKVKRPKAGKGHLMSGKSGRRRAHLRKKTGVSSAFNKTMTRALRGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV20</accession>
    <name>A0A0M2UV20_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Inositol-1-monophosphatase</fullName>
            <ecNumber evidence="6">3.1.3.25</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02961</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>a myo-inositol phosphate + H2O = myo-inositol + phosphate</text>
            <dbReference type="Rhea" id="RHEA:24056"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17268"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:84139"/>
            <dbReference type="EC" id="3.1.3.25"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the inositol monophosphatase superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.25" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000279">
        <property type="protein sequence ID" value="KKO18339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18339">
        <property type="protein sequence ID" value="KKO18339"/>
        <property type="gene ID" value="BROFUL_02961"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3665"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008934">
        <property type="term" value="F:inositol monophosphate 1-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052832">
        <property type="term" value="F:inositol monophosphate 3-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052833">
        <property type="term" value="F:inositol monophosphate 4-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046855">
        <property type="term" value="P:inositol phosphate dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046854">
        <property type="term" value="P:phosphatidylinositol phosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01639">
        <property type="entry name" value="IMPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033942">
        <property type="entry name" value="IMPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020583">
        <property type="entry name" value="Inositol_monoP_metal-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000760">
        <property type="entry name" value="Inositol_monophosphatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020550">
        <property type="entry name" value="Inositol_monophosphatase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022337">
        <property type="entry name" value="Inositol_monophosphatase_SuhB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00459">
        <property type="entry name" value="Inositol_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00377">
        <property type="entry name" value="IMPHPHTASES"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01959">
        <property type="entry name" value="SBIMPHPHTASE"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00629">
        <property type="entry name" value="IMP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00630">
        <property type="entry name" value="IMP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU364068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="269" mass="29640" checksum="2710E1B4E76E1E6A" modified="2015-11-11" version="1">MQTTPHDLQNYCNIAREAALKAGVILKEHFGKVSASMINEKAKNDYVTDVDKKSEDIIKSYIKSHFKNHDILAEESLAERNSSEFLWIIDPLDGTMNYIHGLPGFAVSIALEIEGNLAMGLIYEPLRENIYSAIREQGSFKNNNRIHVSRAETMASALIATGFPFRIKDIIDSYLRVLKDCFLRARGIRRGGSACLDLAYTAEGIFGGFFECALSPWDVAAGALLVTEAGGVVTDFKGGSRYLKTGNIVAGTKGIQHEILKIIQATFTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV47</accession>
    <name>A0A0M2UV47_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01614</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19682">
        <property type="protein sequence ID" value="KKO19682"/>
        <property type="gene ID" value="BROFUL_01614"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1993"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0110001">
        <property type="term" value="C:toxin-antitoxin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008201">
        <property type="entry name" value="HepT-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01934">
        <property type="entry name" value="DUF86"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-1277">Toxin-antitoxin system</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="109" mass="12613" checksum="19CDC2F191D88D48" modified="2015-11-11" version="1">MIKDGTVFLRHILDAINKIQKYTKDMDYEGFRASSLVQDGVIRQLEIIGEATKNLSQEIREKHPDIPWKDMVGMRDKLIHQYFGVDIAGVWDTLEEDIPTLKSNLIKLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVF2</accession>
    <name>A0A0M2UVF2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">VWFA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01237</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000135">
        <property type="protein sequence ID" value="KKO20038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20038">
        <property type="protein sequence ID" value="KKO20038"/>
        <property type="gene ID" value="BROFUL_01237"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00092">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="316"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="domain" description="VWFA" evidence="2">
        <location>
            <begin position="83"/>
            <end position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="339" mass="38493" checksum="D4EEC1B2AA0B5763" modified="2015-11-11" version="1">MTFANPLFLLLIIPFGFLWFFWREKKFIGYSSVSHVKESSGFMRIIPRLNRSVFFVAVFFAIVAVAHPQTKYRQEQTDLLGREIALVIDTSFSMTGTAIETIKKIVGDFIKKRPNDLISITIFGTDAALIVVPTMETQLLEKSLARVQASQVGYQTAIGEGLFTSLAALFEKELGKQFTIKELRNSINKEYLADYAISFAKEMEKRQVLKNKLVVLFTDGIYNIGISPTRPLRLLKRMGIKAYVVAVKASDVTGVDPEVAAQHIEELKEAVESTGGRYYHAENFEEVAKFYNAIDAMEKDKIVIETVVKRKDLYRYPIIASMAFLFAAIFMEHVWIRVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVF4</accession>
    <name>A0A0M2UVF4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02803</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000265">
        <property type="protein sequence ID" value="KKO18479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18479">
        <property type="protein sequence ID" value="KKO18479"/>
        <property type="gene ID" value="BROFUL_02803"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="75" mass="8800" checksum="45B04250946AAAEF" modified="2015-11-11" version="1">MDIAIKKQAKKAIETLSDKKARVALDFINYRRGREEWEATSELLSDEKLSMDYKAAREEIKEGNTVKWKNIKRNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVH1</accession>
    <name>A0A0M2UVH1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Cobalt ABC transporter permease component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_02823</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000265">
        <property type="protein sequence ID" value="KKO18499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18499">
        <property type="protein sequence ID" value="KKO18499"/>
        <property type="gene ID" value="BROFUL_02823"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006824">
        <property type="term" value="P:cobalt ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003339">
        <property type="entry name" value="ABC/ECF_trnsptr_transmembrane"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012809">
        <property type="entry name" value="ECF_CbiQ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02361">
        <property type="entry name" value="CbiQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02454">
        <property type="entry name" value="ECF_T_CbiQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="28"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="67"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="118"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="150"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="240"/>
            <end position="257"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="262" mass="30077" checksum="700C90E395E572F0" modified="2015-11-11" version="1">MGFLHHTFSDLYARRDNWLTRVDVRIKMLYVVSLLFINIWAKNVTVPLCFFVASFLLLFSIKIPLMAIIRNMALPMMLAMLILLVKGLHEGERVWFSLSIPGYNLVFKEEGVRNGLHVCSKVLGGVSLLMLFSFTTTISRLCSGMTWFRLPHTVIEILAFMYRYIFLLLDEVSAMWTAQKSRLGHASWKKTIRSLGILGGLLIIRAFDRAERTHEAMYARGYEGGGILTMPLSPWRKKEYASFTGMVLIIPILIYVGNRCIW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVJ3</accession>
    <name>A0A0M2UVJ3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FMN-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01411</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000146">
        <property type="protein sequence ID" value="KKO19852.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19852">
        <property type="protein sequence ID" value="KKO19852"/>
        <property type="gene ID" value="BROFUL_01411"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1742"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011576">
        <property type="entry name" value="Pyridox_Oxase_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01243">
        <property type="entry name" value="Putative_PNPOx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Putative_PNPOx" evidence="1">
        <location>
            <begin position="15"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01243"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19852.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="135" mass="14939" checksum="A975ED39969CA5F2" modified="2015-11-11" version="1">MISYYKHEEVLQMLPDKMMLILKYEGVVAIVTMGGDGPHMVNTWNSYIVVTRDGHLLLPVGGMIQTEANVEKNNNILLTLGSREVQELRGPGAGFLIKGTAAFIKSGGQFDIIKKRFSWVRAAMEITILSATQTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVJ7</accession>
    <name>A0A0M2UVJ7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative chemotaxis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01195</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000127">
        <property type="protein sequence ID" value="KKO20083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20083">
        <property type="protein sequence ID" value="KKO20083"/>
        <property type="gene ID" value="BROFUL_01195"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1477"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07185">
        <property type="entry name" value="OmpA_C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006665">
        <property type="entry name" value="OmpA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036737">
        <property type="entry name" value="OmpA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00691">
        <property type="entry name" value="OmpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103088">
        <property type="entry name" value="SSF103088"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51123">
        <property type="entry name" value="OMPA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OmpA-like" evidence="3">
        <location>
            <begin position="89"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="29"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="221" mass="24323" checksum="4BF755B51DE753F7" modified="2015-11-11" version="1">MVKRHNFVRGFCLMGIAGVLAVGTGCGETKRLRRENQQLHEQLTSLQQENADLSSKVGQYESELSQLENSKRALEEKLQGTGASVRIKNGAVSVTLPGSVLFDSGQTTLRPQSKETLKKIAGILKTEAASEVVRIEGHTDDDPISKQKDKYKSNWELSTARAAAVLHYMVEECSISPTRVYLAGFGQYQPVTDNNSKSGKASNRRVEFVIVPRGTVDRMLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVK6</accession>
    <name>A0A0M2UVK6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01426</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000146">
        <property type="protein sequence ID" value="KKO19867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19867">
        <property type="protein sequence ID" value="KKO19867"/>
        <property type="gene ID" value="BROFUL_01426"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="72" mass="8202" checksum="F84F41E57388182E" modified="2015-11-11" version="1">MSKNLYVIIDGEVHPFHCQNDYTELDSIVTYANTEEHAMELATLYERGEIEPSDFHCRKCGGTHVVLQESGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVM4</accession>
    <name>A0A0M2UVM4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Malate dehydrogenase</fullName>
            <ecNumber evidence="2">1.1.1.37</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">mdh</name>
        <name evidence="8" type="ORF">BROFUL_02222</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the reversible oxidation of malate to oxaloacetate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>(S)-malate + NAD(+) = H(+) + NADH + oxaloacetate</text>
            <dbReference type="Rhea" id="RHEA:21432"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15589"/>
            <dbReference type="ChEBI" id="CHEBI:16452"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.1.1.37"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the LDH/MDH superfamily. MDH type 3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.37" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19041">
        <property type="protein sequence ID" value="KKO19041"/>
        <property type="gene ID" value="BROFUL_02222"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2774"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030060">
        <property type="term" value="F:L-malate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019752">
        <property type="term" value="P:carboxylic acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01339">
        <property type="entry name" value="LDH-like_MDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00487">
        <property type="entry name" value="Malate_dehydrog_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001557">
        <property type="entry name" value="L-lactate/malate_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022383">
        <property type="entry name" value="Lactate/malate_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001236">
        <property type="entry name" value="Lactate/malate_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015955">
        <property type="entry name" value="Lactate_DH/Glyco_Ohase_4_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011275">
        <property type="entry name" value="Malate_DH_type3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02866">
        <property type="entry name" value="Ldh_1_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00056">
        <property type="entry name" value="Ldh_1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000102">
        <property type="entry name" value="Lac_mal_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00086">
        <property type="entry name" value="LLDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56327">
        <property type="entry name" value="SSF56327"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01763">
        <property type="entry name" value="MalateDH_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0520">NAD</keyword>
    <keyword evidence="2 5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="domain" description="Ldh_1_N" evidence="6">
        <location>
            <begin position="5"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="domain" description="Ldh_1_C" evidence="7">
        <location>
            <begin position="148"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2 3">
        <location>
            <position position="176"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="10"/>
            <end position="15"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="34"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="83"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2 4">
        <location>
            <position position="89"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="96"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="119"/>
            <end position="121"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2 4">
        <location>
            <position position="121"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2 4">
        <location>
            <position position="152"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000102-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000102-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02866"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19041.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="311" mass="33153" checksum="5E71F5A841FBBD8E" modified="2015-11-11" version="1">MARKKITVVGAGNVGATTAQRLAEKELGDVILMDIVQDMPQGKALDILESAPIYGYDSMVSGTNGYEETRGSDIVVITSGVARKPGMSRDDLLKTNAGIVKGVVENVVKTSPDAILIVVSNPLDAMTYVAYKVSHFPKHRVIGMAGVLDAARFRAFLALELRVSVENIHAFVLGGHGDTMVPLTRYTTIAGVSVEELIPKGRLEAIVKRTRDGGAEIVNLLKTGSAFYAPSAAVAEMAESILKDKRKILPCAVLCEGEYSINGLFVGVPVKLGGKGIEQIFEVKLNGEEAAALKRSAEAVKTLCEQVDKLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVQ6</accession>
    <name>A0A0M2UVQ6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Putative peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_02252</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="6">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the peptidase M48 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19071.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19071">
        <property type="protein sequence ID" value="KKO19071"/>
        <property type="gene ID" value="BROFUL_02252"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001915">
        <property type="entry name" value="Peptidase_M48"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01435">
        <property type="entry name" value="Peptidase_M48"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 6" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="1 6" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Peptidase_M48" evidence="7">
        <location>
            <begin position="84"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19071.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="259" mass="29474" checksum="E505D765F6AD463C" modified="2015-11-11" version="1" fragment="single">KNFFFKKFLQGGCIMVLPKSLLFHIAIPAIIFFSPDPLSIAGDDWQLHNPPAEISDAEEVELGKHVDEYIRHQFYLEDDPDFNQVVNSIVQRVVAASDRNTLPFTCVILQSLSINAFSAPGGYIYLTYGLLKFAQTEDEVAGIIGHEVAHVSLRHASRLYHEVMEINSRDEKELHSMTKVLLLYSHLEEFEQDADTKGILYAQKAGFNPKGLLDFLERHLNFMMHQRLFGMFDSAFTAAITARLNHLRECLSSLERSNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVQ9</accession>
    <name>A0A0M2UVQ9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01158</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000124">
        <property type="protein sequence ID" value="KKO20133.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20133">
        <property type="protein sequence ID" value="KKO20133"/>
        <property type="gene ID" value="BROFUL_01158"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20133.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="86" mass="10065" checksum="395816B0B312C087" modified="2015-11-11" version="1">MNKLLKLDQFSNRVDQEDNLHEKAFFFHHEGKKLFGILHLPLNKSGIQRKMGIVMCHPCLIEPLITQRLEVNIYSESSQNVIFETL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVW0</accession>
    <name>A0A0M2UVW0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02189</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000217">
        <property type="protein sequence ID" value="KKO19101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19101">
        <property type="protein sequence ID" value="KKO19101"/>
        <property type="gene ID" value="BROFUL_02189"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2730"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.246.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025639">
        <property type="entry name" value="DUF4338"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038215">
        <property type="entry name" value="TN5-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014735">
        <property type="entry name" value="Transposase_Tn5-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14236">
        <property type="entry name" value="DUF4338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14706">
        <property type="entry name" value="Tnp_DNA_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4338" evidence="1">
        <location>
            <begin position="33"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="domain" description="Tnp_DNA_bind" evidence="2">
        <location>
            <begin position="227"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="394"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="394" mass="45547" checksum="4CD5599AE75ADF46" modified="2015-11-11" version="1" fragment="single">MLRYMIPKVSQSEEIEYRGYTCERRCQEYELWQLGEIGLVLVRGKNDPNYSIWKELLAEHHYLHSAKLYGQQIKYLVKSSEAGWIGAISFSSSAWRVKVRDERLGWDEEERKSGLRKVVSNSRFLIVPWLRVKNLASHVMSKALRRLRSDWEEAYKAVPVLVESYVEKERYEGTCYKASNWEYLGETQGRGRNDRYHEKRLSRKHVFVYELEEGILEAGRQERGCEDWVEEEFQGVRLANRAKKKRVMSIVRDFFASPASPIPMACNTEAKLKGAYRFFGDEGVKPADILDAHIQQTLKRAGEHKVVLSVNDTTSMNLSGHEATEGLGCLSTKQGEDGYFLHDTVVFTTTGIPLGVLDAQTWARDPDEHGKKAKRKQKPIEEKESYKWLRSLQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVZ5</accession>
    <name>A0A0M2UVZ5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Flagellar hook-length control protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">fliK</name>
        <name evidence="3" type="ORF">BROFUL_02119</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19136">
        <property type="protein sequence ID" value="KKO19136"/>
        <property type="gene ID" value="BROFUL_02119"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.750.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021136">
        <property type="entry name" value="Flagellar_hook_control-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038610">
        <property type="entry name" value="FliK-like_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02120">
        <property type="entry name" value="Flg_hook"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0966">Cell projection</keyword>
    <keyword evidence="3" id="KW-0969">Cilium</keyword>
    <keyword evidence="3" id="KW-0282">Flagellum</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flg_hook" evidence="2">
        <location>
            <begin position="468"/>
            <end position="540"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="76"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="550"/>
            <end position="584"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="551"/>
            <end position="566"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="598" mass="65600" checksum="A6DF049B687430A1" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW26</accession>
    <name>A0A0M2UW26_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 13 14">UDP-N-acetylmuramoylalanine--D-glutamate ligase</fullName>
            <ecNumber evidence="5 13 14">6.3.2.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">D-glutamic acid-adding enzyme</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">murD</name>
        <name evidence="18" type="ORF">BROFUL_01013</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13 14">Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 13 14">
            <text>ATP + D-glutamate + UDP-N-acetyl-alpha-D-muramoyl-L-alanine = ADP + H(+) + phosphate + UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamate</text>
            <dbReference type="Rhea" id="RHEA:16429"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29986"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:83898"/>
            <dbReference type="ChEBI" id="CHEBI:83900"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.9"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 13 14">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 13 14">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 13">Belongs to the MurCDEF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.9" evidence="5 13 14"/>
    <dbReference type="EMBL" id="LAQJ01000119">
        <property type="protein sequence ID" value="KKO20268.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20268">
        <property type="protein sequence ID" value="KKO20268"/>
        <property type="gene ID" value="BROFUL_01013"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1272"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008764">
        <property type="term" value="F:UDP-N-acetylmuramoylalanine-D-glutamate ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00639">
        <property type="entry name" value="MurD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036565">
        <property type="entry name" value="Mur-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004101">
        <property type="entry name" value="Mur_ligase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036615">
        <property type="entry name" value="Mur_ligase_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013221">
        <property type="entry name" value="Mur_ligase_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005762">
        <property type="entry name" value="MurD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02875">
        <property type="entry name" value="Mur_ligase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08245">
        <property type="entry name" value="Mur_ligase_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53244">
        <property type="entry name" value="SSF53244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53623">
        <property type="entry name" value="SSF53623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01087">
        <property type="entry name" value="murD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11 13 14" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="8 13 14" id="KW-0132">Cell division</keyword>
    <keyword evidence="9 13 14" id="KW-0133">Cell shape</keyword>
    <keyword evidence="12 13 14" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="7 13" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="13 18" id="KW-0436">Ligase</keyword>
    <keyword evidence="15" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10 13 14" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="15" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="15" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_M" evidence="17">
        <location>
            <begin position="117"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_C" evidence="16">
        <location>
            <begin position="318"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <begin position="119"/>
            <end position="125"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00015655"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00639"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU003664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF02875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="Pfam" id="PF08245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="KKO20268.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="460" mass="50382" checksum="DB4ECB97E62D93C3" modified="2015-11-11" version="1">MQYDFKNKKITVMGLGLFGGGVGIAQFLVRQGARVTVTDVRTAQELSPSVKRLEGLPISYKLGGHCEDDFVSADMVIVNPAVPKDSRYLHLARNNHVPMDSEINIFFQLCPAPIIGITGSNGKSTTTTLTGKILHQTQRTTWVGGNIGKSLLSDLGEIQPADIVVLELSSFQLEELLCSQTSPGISIVTNISPNHLDRYPGMNEYIQAKKGIIAHQKPTDYAILNYDDPELRRWEKECKGNVLWYSTRTTLSEGAFIDGNSLVLSVKGNTIAVPCVSGIKIPGIHNLQNILAASCAAYLAGANGRHIENTIATFPGLEHRLEFVRQINGVQYYNDSKATTPESAMAAVTAFQTPVILIAGGYDKGSDFEEFAGVCAKRARSVILIGKTAKKIEELIRQKKEGREMPSLFTPTTFREAFQQATTIAKSGDVVLLSPACASYDMFLNYEERGRQFKDMVRAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW71</accession>
    <name>A0A0M2UW71_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Protein archease</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02089</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Activates the tRNA-splicing ligase complex by facilitating the enzymatic turnover of catalytic subunit RtcB. Acts by promoting the guanylylation of RtcB, a key intermediate step in tRNA ligation. Can also alter the NTP specificity of RtcB such that ATP, dGTP or ITP is used efficiently.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the archease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000209">
        <property type="protein sequence ID" value="KKO19211.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19211">
        <property type="protein sequence ID" value="KKO19211"/>
        <property type="gene ID" value="BROFUL_02089"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006388">
        <property type="term" value="P:tRNA splicing, via endonucleolytic cleavage and ligation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.55.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01222">
        <property type="entry name" value="Archease_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002804">
        <property type="entry name" value="Archease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022952">
        <property type="entry name" value="Archease_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023572">
        <property type="entry name" value="Archease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036820">
        <property type="entry name" value="Archease_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12682">
        <property type="entry name" value="PTHR12682"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01951">
        <property type="entry name" value="Archease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69819">
        <property type="entry name" value="SSF69819"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0106">Calcium</keyword>
    <keyword evidence="3 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="Archease" evidence="6">
        <location>
            <begin position="4"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="12"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="137"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="138"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01222"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01951"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19211.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="138" mass="15806" checksum="B0F4519B765F2283" modified="2015-11-11" version="1">MKNYILIDHTADIGIDVFGNSLQELFTNAAFALFDIITDLSNVEGKITCTVSISGIDKEQLLVNWLHELLYLHDVKNLLFRDFCIVDMTDHQLNATVRGDVIRDDKHVIKTEIKAVTYHCLSIVQEGDRWKARVIFDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW98</accession>
    <name>A0A0M2UW98_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00930</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000112">
        <property type="protein sequence ID" value="KKO20348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20348">
        <property type="protein sequence ID" value="KKO20348"/>
        <property type="gene ID" value="BROFUL_00930"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1171"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011576">
        <property type="entry name" value="Pyridox_Oxase_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01243">
        <property type="entry name" value="Putative_PNPOx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Putative_PNPOx" evidence="1">
        <location>
            <begin position="3"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01243"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="123" mass="13432" checksum="582CD8D0886E2C6C" modified="2015-11-11" version="1">MIPEKLLEIMKKDGVVAIATVGKDGPHMVNTWNSYIRISSDGRLFIPAGYMHKTEANIAYNPNVLITLGSSKVKGLHGAGAGFLIKGKATFITSGPDFDFMKEKFSWLRATLAITIDSATQTW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWA6</accession>
    <name>A0A0M2UWA6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02512</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000235">
        <property type="protein sequence ID" value="KKO18789.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18789">
        <property type="protein sequence ID" value="KKO18789"/>
        <property type="gene ID" value="BROFUL_02512"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="60"/>
            <end position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18789.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="80" mass="9003" checksum="15F48C0B2071A44E" modified="2015-11-11" version="1">MFIESLDSLSRSLCTNTAIDELKLIETGWCWPLISSGVTKKKRNVVLQEIFFDYFEEDKRSDLKGPNGLKGVGKSISGFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWB0</accession>
    <name>A0A0M2UWB0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Rubredoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">rub</name>
        <name evidence="9" type="ORF">BROFUL_01424</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="6 7">
            <name>Fe(3+)</name>
            <dbReference type="ChEBI" id="CHEBI:29034"/>
        </cofactor>
        <text evidence="6 7">Binds 1 Fe(3+) ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the rubredoxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000146">
        <property type="protein sequence ID" value="KKO19865.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19865">
        <property type="protein sequence ID" value="KKO19865"/>
        <property type="gene ID" value="BROFUL_01424"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00730">
        <property type="entry name" value="rubredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024922">
        <property type="entry name" value="Rubredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024934">
        <property type="entry name" value="Rubredoxin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024935">
        <property type="entry name" value="Rubredoxin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018527">
        <property type="entry name" value="Rubredoxin_Fe_BS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00301">
        <property type="entry name" value="Rubredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000071">
        <property type="entry name" value="Rubredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00163">
        <property type="entry name" value="RUBREDOXIN"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00202">
        <property type="entry name" value="RUBREDOXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50903">
        <property type="entry name" value="RUBREDOXIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0249">Electron transport</keyword>
    <keyword evidence="5 6 7" id="KW-0408">Iron</keyword>
    <keyword evidence="3 6 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Rubredoxin-like" evidence="8">
        <location>
            <begin position="1"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="6"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="9"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="39"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="42"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR000071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000071-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19865.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="52" mass="5854" checksum="DA142FA43CD84DF2" modified="2015-11-11" version="1">MEKYKCNICGYIYNPAKGDPTHGVDPGTSFQHLSDDWTCPVCGVPKEQFEVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWC1</accession>
    <name>A0A0M2UWC1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nucleosidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02465</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18804.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18804">
        <property type="protein sequence ID" value="KKO18804"/>
        <property type="gene ID" value="BROFUL_02465"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009116">
        <property type="term" value="P:nucleoside metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000845">
        <property type="entry name" value="Nucleoside_phosphorylase_d"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035994">
        <property type="entry name" value="Nucleoside_phosphorylase_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01048">
        <property type="entry name" value="PNP_UDP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53167">
        <property type="entry name" value="SSF53167"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PNP_UDP_1" evidence="1">
        <location>
            <begin position="2"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18804.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="257" mass="27993" checksum="086DE1C4C72EA72B" modified="2015-11-11" version="1">MIAVFFALSQEVASLKPHVNILKKIRHAHAVFYQAEFCGFPLTIVQSGVGRKVSDLIHQLSKHFRIQFMISSGFAGSVNPRVGVGDLVIGKHVLSPLSEVSEGEIRIGATLPCDAPAVELAVKLGSAASLQLHCGDILSVDKIIRQSSLKRHIGNQTSAIAVDMESFAIVERANAMGIPFIVVRAISDGVDEDMEICENMVTKGGGVDISATARYLLNKPHRIPYLNRLRKQTRQATNTLSAFFPNFITQIYNSLLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWC9</accession>
    <name>A0A0M2UWC9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Phenylalanine--tRNA ligase beta subunit</fullName>
            <ecNumber evidence="11">6.1.1.20</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">Phenylalanyl-tRNA synthetase beta subunit</fullName>
            <shortName evidence="11">PheRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">pheT</name>
        <name evidence="14" type="ORF">BROFUL_01398</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + H(+) + L-phenylalanyl-tRNA(Phe)</text>
            <dbReference type="Rhea" id="RHEA:19413"/>
            <dbReference type="Rhea" id="RHEA-COMP:9668"/>
            <dbReference type="Rhea" id="RHEA-COMP:9699"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58095"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78531"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="11">Binds 2 magnesium ions per tetramer.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 11">Tetramer of two alpha and two beta subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.20" evidence="11"/>
    <dbReference type="EMBL" id="LAQJ01000145">
        <property type="protein sequence ID" value="KKO19885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19885">
        <property type="protein sequence ID" value="KKO19885"/>
        <property type="gene ID" value="BROFUL_01398"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1724"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004826">
        <property type="term" value="F:phenylalanine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006432">
        <property type="term" value="P:phenylalanyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00283">
        <property type="entry name" value="Phe_tRNA_synth_beta1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005146">
        <property type="entry name" value="B3/B4_tRNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005121">
        <property type="entry name" value="Fdx_antiC-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036690">
        <property type="entry name" value="Fdx_antiC-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045060">
        <property type="entry name" value="Phe-tRNA-ligase_IIc_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004532">
        <property type="entry name" value="Phe-tRNA-ligase_IIc_bsu_bact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020825">
        <property type="entry name" value="Phe-tRNA_synthase-like_B3/B4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041616">
        <property type="entry name" value="PheRS_beta_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005147">
        <property type="entry name" value="tRNA_synthase_B5-dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10947">
        <property type="entry name" value="PTHR10947"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03483">
        <property type="entry name" value="B3_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03484">
        <property type="entry name" value="B5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03147">
        <property type="entry name" value="FDX-ACB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17759">
        <property type="entry name" value="tRNA_synthFbeta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00873">
        <property type="entry name" value="B3_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00874">
        <property type="entry name" value="B5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00896">
        <property type="entry name" value="FDX-ACB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54991">
        <property type="entry name" value="SSF54991"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00472">
        <property type="entry name" value="pheT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51483">
        <property type="entry name" value="B5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51447">
        <property type="entry name" value="FDX_ACB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="7 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="8 11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9 11" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="B5" evidence="13">
        <location>
            <begin position="288"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="domain" description="FDX-ACB" evidence="12">
        <location>
            <begin position="572"/>
            <end position="665"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="342"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="348"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="351"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="352"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000395"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008653"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KKO19885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="667" mass="74614" checksum="6B3E44DCDDBDF1CF" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWG8</accession>
    <name>A0A0M2UWG8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 3">ATP-dependent Clp protease proteolytic subunit</fullName>
            <ecNumber evidence="2">3.4.21.92</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Endopeptidase Clp</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">clpP</name>
        <name evidence="4" type="ORF">BROFUL_02447</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Fourteen ClpP subunits assemble into 2 heptameric rings which stack back to back to give a disk-like structure with a central cavity, resembling the structure of eukaryotic proteasomes.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2 3">Belongs to the peptidase S14 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.92" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000232">
        <property type="protein sequence ID" value="KKO18854.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18854">
        <property type="protein sequence ID" value="KKO18854"/>
        <property type="gene ID" value="BROFUL_02447"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3042"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07017">
        <property type="entry name" value="S14_ClpP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00444">
        <property type="entry name" value="ClpP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001907">
        <property type="entry name" value="ClpP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023562">
        <property type="entry name" value="ClpP/TepA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10381">
        <property type="entry name" value="PTHR10381"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00574">
        <property type="entry name" value="CLP_protease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00127">
        <property type="entry name" value="CLPPROTEASEP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 4" id="KW-0645">Protease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0720">Serine protease</keyword>
    <feature type="active site" description="Nucleophile" evidence="2">
        <location>
            <position position="112"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00444"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003567"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18854.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="212" mass="23375" checksum="3BE67C1899B84CCB" modified="2015-11-11" version="1">MIFDMPIPFIGKRQVLCMQEEGAGEEKEKRSGGDLIARLLKTRTVMVSDEVNKKMAQQIMTQLILLEGESNEDIKMFINSPGGDADAGFAIFDMMRFIKPKVKAICAGVAASAAVIILLGAKRENRFSLSNARVLIHQPSTGIHGTAADIQIEASEILKCREKINRLISVETGQPLEKVESDTKRNFWMSAEEAFKYGLVSKIIQTSGDLKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWI0</accession>
    <name>A0A0M2UWI0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 4">30S ribosomal protein S1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_01035</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the bacterial ribosomal protein bS1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20187">
        <property type="protein sequence ID" value="KKO20187"/>
        <property type="gene ID" value="BROFUL_01035"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1297"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035104">
        <property type="entry name" value="Ribosomal_protein_S1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000110">
        <property type="entry name" value="Ribosomal_S1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022967">
        <property type="entry name" value="S1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003029">
        <property type="entry name" value="S1_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10724:SF7">
        <property type="entry name" value="PTHR10724:SF7"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00575">
        <property type="entry name" value="S1"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002111">
        <property type="entry name" value="RpsA"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00681">
        <property type="entry name" value="RIBOSOMALS1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50126">
        <property type="entry name" value="S1"/>
        <property type="match status" value="6"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="S1 motif" evidence="6">
        <location>
            <begin position="47"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="domain" description="S1 motif" evidence="6">
        <location>
            <begin position="128"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="domain" description="S1 motif" evidence="6">
        <location>
            <begin position="214"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="domain" description="S1 motif" evidence="6">
        <location>
            <begin position="299"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="domain" description="S1 motif" evidence="6">
        <location>
            <begin position="386"/>
            <end position="456"/>
        </location>
    </feature>
    <feature type="domain" description="S1 motif" evidence="6">
        <location>
            <begin position="474"/>
            <end position="543"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="551"/>
            <end position="583"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="554"/>
            <end position="583"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006767"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR002111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="583" mass="64652" checksum="A8FA851E91680912" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWN9</accession>
    <name>A0A0M2UWN9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">50S ribosomal protein L14</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3 6" type="primary">rplN</name>
        <name evidence="6" type="ORF">BROFUL_01913</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 5">Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L19. In the 70S ribosome, L14 and L19 interact and together make contacts with the 16S rRNA in bridges B5 and B8.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the universal ribosomal protein uL14 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19386">
        <property type="protein sequence ID" value="KKO19386"/>
        <property type="gene ID" value="BROFUL_01913"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2382"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.150.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01367">
        <property type="entry name" value="Ribosomal_L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036853">
        <property type="entry name" value="Ribosomal_L14_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000218">
        <property type="entry name" value="Ribosomal_L14P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005745">
        <property type="entry name" value="Ribosomal_L14P_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019972">
        <property type="entry name" value="Ribosomal_L14P_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11761">
        <property type="entry name" value="PTHR11761"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00238">
        <property type="entry name" value="Ribosomal_L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01374">
        <property type="entry name" value="Ribosomal_L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50193">
        <property type="entry name" value="SSF50193"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01067">
        <property type="entry name" value="rplN_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00049">
        <property type="entry name" value="RIBOSOMAL_L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1 3 4" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 5" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01367"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003950"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="122" mass="13216" checksum="3F6ADCC7CE291197" modified="2015-11-11" version="1">MIMEQTKLDIADNSGAKRATCIKVLGGTSRKYATVGDIIVAAVKKAIPDGVVKKGDVVKGVVVRTKKNIRRDDGSYLKFDKNAIVIIDNDGNPKGTRIFGAVARELRQKNFMKIISLAAEVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWP6</accession>
    <name>A0A0M2UWP6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Nucleoside permease NupX</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">nupX_1</name>
        <name evidence="3" type="ORF">BROFUL_00775</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000099">
        <property type="protein sequence ID" value="KKO20488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20488">
        <property type="protein sequence ID" value="KKO20488"/>
        <property type="gene ID" value="BROFUL_00775"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005337">
        <property type="term" value="F:nucleoside transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008276">
        <property type="entry name" value="C_nuclsd_transpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011657">
        <property type="entry name" value="CNT_C_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10590">
        <property type="entry name" value="PTHR10590"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07662">
        <property type="entry name" value="Nucleos_tra2_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="84"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="137"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="175"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="234"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="271"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="domain" description="Nucleos_tra2_C" evidence="2">
        <location>
            <begin position="83"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20488.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="301" mass="32374" checksum="97919A39362EB623" modified="2015-11-11" version="1">MVKTFAWFLQKTTNIGGAVGVGAAANVFLGMIESTLFIRPYLKEMSRSELFITITCGMAGIAGTVMVLYANILQRVVPDVMGHLLTASIISIPAAIMISQIMIPETGRTTSGEMMKPQLAANSMDALTKGTLEGIHLLINIISMLIVLIAFVYLANKALSLLPDLGNRPITLQRMLGYLMSSVVWLMGIPWKEAFTAGSLMGTKTILNEFIAYIDLAKLPDGVLSPRSKMITTYALCGFANFGSVGIMIGGVGSMIPERRDEVVSLGMKSLVAGTLSTCTTGALVGIVCNFVTIQRKYFRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWP7</accession>
    <name>A0A0M2UWP7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative phosphoesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01023</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000120">
        <property type="protein sequence ID" value="KKO20257.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20257">
        <property type="protein sequence ID" value="KKO20257"/>
        <property type="gene ID" value="BROFUL_01023"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006813">
        <property type="term" value="P:potassium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038763">
        <property type="entry name" value="DHH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003156">
        <property type="entry name" value="DHHA1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003148">
        <property type="entry name" value="RCK_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02272">
        <property type="entry name" value="DHHA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02254">
        <property type="entry name" value="TrkA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64182">
        <property type="entry name" value="SSF64182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RCK N-terminal" evidence="1">
        <location>
            <begin position="2"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="domain" description="DHHA1" evidence="2">
        <location>
            <begin position="353"/>
            <end position="436"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20257.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="490" mass="53988" checksum="62AD1C99B1459AA6" modified="2015-11-11" version="1">MYLILGCDEISCALARILSRSGEETLVIGNNEAVFLGLKEPNLRVMTADIHTLDFDSLPIKNTIAFILLQKTHRDNLTLANRIRKLFPDKFILSQATDEMEGAELSENGVDRTVQTARIIIDAILNELETAKLKRSVFSLVSVIQAAANKGVAIFLQDNPDPDAIASGFALKRIAEKYNIKSNIYYGGNIGRQQNKTLVNLLETDLTRLKTTEEVLKIVSSAGKVALIEASIPSKNNILPLHTIPHIVIDHHQTDLSLVKGEFIEILPKIGATSTIMTRYLRHLDIVPDPPLATALRYGIRVDTGGFTRNTTTEDLEAAAYLSPLLDTALLNQIENPPMSAETMDIIGRTIRNREIRGSYLISFVEFITDRDALPQAAELMLQMEGVSTVLVFGIDKDKVQLSARSVDSRINLAFLLQKAFGFMNAGGHANMAAGCVDLGIFGDVNDKKSLSRITFDAVRKKFFSAAGIDLEKREIPDELELIASNSIKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWT8</accession>
    <name>A0A0M2UWT8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01851</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000191">
        <property type="protein sequence ID" value="KKO19436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19436">
        <property type="protein sequence ID" value="KKO19436"/>
        <property type="gene ID" value="BROFUL_01851"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="54" mass="6098" checksum="CB53AF6CF166169D" modified="2015-11-11" version="1">MVAGADCYVPDTAGCIDHFYPRFRASPLYLRTVLKKIIIKKPKNAFRKTGLLLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWX4</accession>
    <name>A0A0M2UWX4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="11 12">Protein translocase subunit SecA</fullName>
            <ecNumber evidence="11">7.4.2.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">secA</name>
        <name evidence="16" type="ORF">BROFUL_01810</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">Monomer and homodimer. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF. Other proteins may also be involved.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cell membrane</location>
            <topology evidence="11">Peripheral membrane protein</topology>
            <orientation evidence="11">Cytoplasmic side</orientation>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="11">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="11">Distribution is 50-50.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 11 12">Belongs to the SecA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.4.2.8" evidence="11"/>
    <dbReference type="EMBL" id="LAQJ01000189">
        <property type="protein sequence ID" value="KKO19471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19471">
        <property type="protein sequence ID" value="KKO19471"/>
        <property type="gene ID" value="BROFUL_01810"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2251"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0065002">
        <property type="term" value="P:intracellular protein transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017038">
        <property type="term" value="P:protein import"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006605">
        <property type="term" value="P:protein targeting"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd18803">
        <property type="entry name" value="SF2_C_secA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01382">
        <property type="entry name" value="SecA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000185">
        <property type="entry name" value="SecA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020937">
        <property type="entry name" value="SecA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011115">
        <property type="entry name" value="SecA_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014018">
        <property type="entry name" value="SecA_motor_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011130">
        <property type="entry name" value="SecA_preprotein_X-link_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044722">
        <property type="entry name" value="SecA_SF2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011116">
        <property type="entry name" value="SecA_Wing/Scaffold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036266">
        <property type="entry name" value="SecA_Wing/Scaffold_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036670">
        <property type="entry name" value="SecA_X-link_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30612">
        <property type="entry name" value="PTHR30612"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07517">
        <property type="entry name" value="SecA_DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01043">
        <property type="entry name" value="SecA_PP_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07516">
        <property type="entry name" value="SecA_SW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00906">
        <property type="entry name" value="SECA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00957">
        <property type="entry name" value="SecA_DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00958">
        <property type="entry name" value="SecA_PP_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81767">
        <property type="entry name" value="SSF81767"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81886">
        <property type="entry name" value="SSF81886"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00963">
        <property type="entry name" value="secA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01312">
        <property type="entry name" value="SECA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51196">
        <property type="entry name" value="SECA_MOTOR_DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 11 12" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 11" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 11 12" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 11 12" id="KW-0653">Protein transport</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 11" id="KW-1278">Translocase</keyword>
    <keyword evidence="9 11 12" id="KW-0811">Translocation</keyword>
    <keyword evidence="2 11 12" id="KW-0813">Transport</keyword>
    <feature type="domain" description="SECA_MOTOR_DEAD" evidence="15">
        <location>
            <begin position="1"/>
            <end position="582"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase ATP-binding" evidence="13">
        <location>
            <begin position="97"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="14">
        <location>
            <begin position="429"/>
            <end position="608"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="95"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="113"/>
            <end position="117"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="504"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007650"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU003874"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS51196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="KKO19471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="759" mass="86933" checksum="9DCA5ADEB2806244" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX44</accession>
    <name>A0A0M2UX44_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative ferredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00616</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20633">
        <property type="protein sequence ID" value="KKO20633"/>
        <property type="gene ID" value="BROFUL_00616"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13237">
        <property type="entry name" value="Fer4_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="11"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="46"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="77" mass="9006" checksum="763A6C2B2C0D98D9" modified="2015-11-11" version="1">MPEEKTPKRKGIVHINHEYCKRCGICVNFCPVKNLEIRQQKLRELERCIACRMCERYCPDIAIEIEEIDAKTVIAGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX60</accession>
    <name>A0A0M2UX60_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Response regulatory domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02209</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000221">
        <property type="protein sequence ID" value="KKO19074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19074">
        <property type="protein sequence ID" value="KKO19074"/>
        <property type="gene ID" value="BROFUL_02209"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028976">
        <property type="entry name" value="CheC-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103039">
        <property type="entry name" value="SSF103039"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0145">Chemotaxis</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="3">
        <location>
            <begin position="211"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="335" mass="37748" checksum="95A675C010DE5ED0" modified="2015-11-11" version="1">MENPIIKKSPSSKLEETLINTFPRICTDCGKLTNKQFLLTNPVLQNTTLSEFIKNANTSYILAKLTIEEFYEGELYLIFTVKEAITIGSLLLTLEDAIIRENADKGIFEGDCTDAFKEFANQVCGMLDNELRPKLPKPIHLKLTSTVLMNKENANTVLSEEILNEERLILTATMQILGFDDGKFILSISKLVGEEFFCEIIAEDTKKFRGTILVVDDSNTDLRIIRKLLGDEYKVLVTDNPNSALSRLQKDHIDLVLIDVHMPGISGITLCERFRRNAMSNAIPIIICSSSPTQENVIQAIRAGAEDFLVKPFTRQKLIEKINKHLINRNVLLNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX61</accession>
    <name>A0A0M2UX61_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_00636</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the TonB-dependent receptor family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="SMR" id="A0A0M2UX61"/>
    <dbReference type="EnsemblBacteria" id="KKO20653">
        <property type="protein sequence ID" value="KKO20653"/>
        <property type="gene ID" value="BROFUL_00636"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.803"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039426">
        <property type="entry name" value="BtuB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012910">
        <property type="entry name" value="Plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037066">
        <property type="entry name" value="Plug_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30069">
        <property type="entry name" value="PTHR30069"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07715">
        <property type="entry name" value="Plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="1 4" id="KW-0798">TonB box</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644252" evidence="7">
        <location>
            <begin position="25"/>
            <end position="792"/>
        </location>
    </feature>
    <feature type="domain" description="Plug" evidence="9">
        <location>
            <begin position="222"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="domain" description="TonB_dep_Rec" evidence="8">
        <location>
            <begin position="417"/>
            <end position="790"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="72"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="129"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="5">
        <location>
            <begin position="29"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="84"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="129"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="175"/>
            <end position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF07715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO20653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="792" mass="89600" checksum="F6CF4F33462E48FD" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX69</accession>
    <name>A0A0M2UX69_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cold shock protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01715</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000177">
        <property type="protein sequence ID" value="KKO19571.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="SMR" id="A0A0M2UX69"/>
    <dbReference type="EnsemblBacteria" id="KKO19571">
        <property type="protein sequence ID" value="KKO19571"/>
        <property type="gene ID" value="BROFUL_01715"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04458">
        <property type="entry name" value="CSP_CDS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012156">
        <property type="entry name" value="Cold_shock_CspA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011129">
        <property type="entry name" value="CSD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019844">
        <property type="entry name" value="CSD_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002059">
        <property type="entry name" value="CSP_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00313">
        <property type="entry name" value="CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002599">
        <property type="entry name" value="Cold_shock_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00050">
        <property type="entry name" value="COLDSHOCK"/>
    </dbReference>
    <dbReference type="SMART" id="SM00357">
        <property type="entry name" value="CSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00352">
        <property type="entry name" value="CSD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51857">
        <property type="entry name" value="CSD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CSD" evidence="3">
        <location>
            <begin position="1"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19571.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="66" mass="7414" checksum="C52DA206E1549CB8" modified="2015-11-11" version="1">MATGTVKWFNDKKGFGFISQDNGQDVFVHQTSIKSEGFRTLAEGDKVEFEVIKDQKGYKATNVVKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX91</accession>
    <name>A0A0M2UX91_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00576</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000081">
        <property type="protein sequence ID" value="KKO20688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20688">
        <property type="protein sequence ID" value="KKO20688"/>
        <property type="gene ID" value="BROFUL_00576"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="43" mass="4611" checksum="C0C4EEECFDDAFC93" modified="2015-11-11" version="1">MTIGGYRFGTRLAQGLVKGGEGVSGMQTVNLEVRLGYVRKDVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX95</accession>
    <name>A0A0M2UX95_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01703</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000176">
        <property type="protein sequence ID" value="KKO19596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19596">
        <property type="protein sequence ID" value="KKO19596"/>
        <property type="gene ID" value="BROFUL_01703"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644065" evidence="1">
        <location>
            <begin position="26"/>
            <end position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="240" mass="27931" checksum="90098558B49AFB45" modified="2015-11-11" version="1">MKRKLKFVLIGLFSACLFQVHSLHASERLDDGILWSTKTEINEKYGKPTYLYCEEEPFRRYMIVKPEDESSLRATFLYDVVVHDFYYINKSGNDLEYRFYYGEDMSEGKKTYRVKECTIKFLNNPVPLGRVAEIVPEFKPAFQCSKVFQERLVNYNNIRLIFVTEKVNDLSKKIGSLFVDPDKDIKDWSLSYYAILSDGEPENVSSNSMVKEVIIAVDGDYRIGKTANAFRTKMIKNPLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXA6</accession>
    <name>A0A0M2UXA6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00549</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000077">
        <property type="protein sequence ID" value="KKO20713.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20713">
        <property type="protein sequence ID" value="KKO20713"/>
        <property type="gene ID" value="BROFUL_00549"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.689"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="671"/>
            <end position="692"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="713"/>
            <end position="733"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="753"/>
            <end position="774"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="821"/>
            <end position="841"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="861"/>
            <end position="884"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="956"/>
            <end position="974"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="986"/>
            <end position="1007"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="462"/>
            <end position="481"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="280"/>
            <end position="307"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20713.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1106" mass="127611" checksum="ACF6744ACB42BB4B" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXB8</accession>
    <name>A0A0M2UXB8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Radical SAM core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_00540</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000076">
        <property type="protein sequence ID" value="KKO20728.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20728">
        <property type="protein sequence ID" value="KKO20728"/>
        <property type="gene ID" value="BROFUL_00540"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.678"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039661">
        <property type="entry name" value="ELP3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032432">
        <property type="entry name" value="Radical_SAM_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005911">
        <property type="entry name" value="YhcC-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11135">
        <property type="entry name" value="PTHR11135"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11135:SF1">
        <property type="entry name" value="PTHR11135:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16199">
        <property type="entry name" value="Radical_SAM_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01091">
        <property type="entry name" value="uncharacterized_CHP01210-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01212">
        <property type="entry name" value="TIGR01212"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="7">
        <location>
            <begin position="29"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20728.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="346" mass="39328" checksum="DFF4D0755422A9F3" modified="2015-11-11" version="1">MKNGVSSLHLKPCLLKHRFYPFREYLKEHFPYKVHKIPLHAGFTCPNRDGRVAVGGCTYCINESFSPNVKGHSLPVREQIERGKEFHKKRYGAEKFIAYFQSFTNTYADVETLRSCYEEALSDGDVVGLSIGTRPDCISDEILGLIDGYTKKYHVWIEYGLQSIHDKTLRRINRGHDSRTFLDAIQRTKKTCINICVHVILGLPGETEEEMMETAETVARLGIQGVKLHHLYVAKNTALAEEYFQGKVQTLNRNAYIKLAVGFLERIPSDVTVQRLVGDTHGNFLLSPVWKASKAEITNGITQEFERRGTYQGLQYARSIAVMKHAISCSSKIMGERDLEVLDYTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXC2</accession>
    <name>A0A0M2UXC2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00545</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000076">
        <property type="protein sequence ID" value="KKO20733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20733">
        <property type="protein sequence ID" value="KKO20733"/>
        <property type="gene ID" value="BROFUL_00545"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644064" evidence="1">
        <location>
            <begin position="22"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="198" mass="22417" checksum="8223B19774330300" modified="2015-11-11" version="1">MKTTLPLLGLILAFFTQGCFLSETKTASAQSSDNGWKNFYGISWRGTPADNIRYAKQMGYDYIAINSNVSTSNYRGNPNAAGLKFYIIDPHWYSSVLSGHSRTIDTTRSYTAAEKAWYEQHMVWKSYEPFPNNLATGWFFGNPSIISIMWDFQQQAVIDEVVEKAITLFRSYEDTNLPFTFAGLADDVAYLPAFFLLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXJ2</accession>
    <name>A0A0M2UXJ2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative DNA polymerase beta subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01613</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19681">
        <property type="protein sequence ID" value="KKO19681"/>
        <property type="gene ID" value="BROFUL_01613"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1992"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041633">
        <property type="entry name" value="Polbeta"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18765">
        <property type="entry name" value="Polbeta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Polbeta" evidence="2">
        <location>
            <begin position="8"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18765"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="94" mass="10886" checksum="F15196179613549E" modified="2015-11-11" version="1">MTYQEMENKVVSILTKYNVKTIGIFGSYARGVQRPDSDLDVLVNFKERKSLLTLVRIERELSETIGVKVDLLTEQSISPYLIDRIKSEMKVIYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXM5</accession>
    <name>A0A0M2UXM5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02068</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000208">
        <property type="protein sequence ID" value="KKO19224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19224">
        <property type="protein sequence ID" value="KKO19224"/>
        <property type="gene ID" value="BROFUL_02068"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="114" mass="12440" checksum="63A2B1AC011497B0" modified="2015-11-11" version="1">MIRTEVISFADMFFDKIADVTYTVADLAGTPQARVDTALWRIHYCTNAIQIATGPNPKANLIDMMTLVSLGRMAMEALPLSVCLAPTPESSKIPFAVWSSRGGRLRAAILPRNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXN7</accession>
    <name>A0A0M2UXN7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Purine nucleoside phosphorylase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_00721</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>adenosine + H(+) + H2O = inosine + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:24408"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16335"/>
            <dbReference type="ChEBI" id="CHEBI:17596"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="EC" id="3.5.4.4"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="4">
            <dbReference type="Rhea" id="RHEA:24409"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>adenosine + phosphate = adenine + alpha-D-ribose 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:27642"/>
            <dbReference type="ChEBI" id="CHEBI:16335"/>
            <dbReference type="ChEBI" id="CHEBI:16708"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57720"/>
            <dbReference type="EC" id="2.4.2.1"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="2">
            <dbReference type="Rhea" id="RHEA:27643"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>inosine + phosphate = alpha-D-ribose 1-phosphate + hypoxanthine</text>
            <dbReference type="Rhea" id="RHEA:27646"/>
            <dbReference type="ChEBI" id="CHEBI:17368"/>
            <dbReference type="ChEBI" id="CHEBI:17596"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57720"/>
            <dbReference type="EC" id="2.4.2.1"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="1">
            <dbReference type="Rhea" id="RHEA:27647"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>phosphate + S-methyl-5'-thioadenosine = adenine + S-methyl-5-thio-alpha-D-ribose 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:11852"/>
            <dbReference type="ChEBI" id="CHEBI:16708"/>
            <dbReference type="ChEBI" id="CHEBI:17509"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58533"/>
            <dbReference type="EC" id="2.4.2.28"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="3">
            <dbReference type="Rhea" id="RHEA:11853"/>
        </physiologicalReaction>
    </comment>
    <comment type="similarity">
        <text evidence="5 9">Belongs to the purine nucleoside phosphorylase YfiH/LACC1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20602.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20602">
        <property type="protein sequence ID" value="KKO20602"/>
        <property type="gene ID" value="BROFUL_00721"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.913"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004000">
        <property type="term" value="F:adenosine deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017061">
        <property type="term" value="F:S-methyl-5-thioadenosine phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd16833">
        <property type="entry name" value="YfiH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.140.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003730">
        <property type="entry name" value="Cu_polyphenol_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038371">
        <property type="entry name" value="Cu_polyphenol_OxRdtase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011324">
        <property type="entry name" value="Cytotoxic_necrot_fac-like_cat"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30616">
        <property type="entry name" value="PTHR30616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02578">
        <property type="entry name" value="Cu-oxidase_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64438">
        <property type="entry name" value="SSF64438"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00726">
        <property type="entry name" value="TIGR00726"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001292"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00001600"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00007353"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU361274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO20602.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="271" mass="30555" checksum="B69D6B361055E98F" modified="2015-11-11" version="1">MIQQETGALPLWFFQNLLHDKEIQHFVSSRTGGLSRWPYDSLNLGFHVGDNPETVHKNRQRLAVSVGIPLDNFTFARQVHGGNVKIITEDLRGSGAFQESTAISDADAMITNIPQICLMVLQADCVPFLFFDTKRKVIGVAHAGWRGTLRMIAQNTIKVFMEKFCCSPDDILVGVGPSIGPCCYEIGPETTAEIRKVFGYENTYLRNENTLGKRHFNLWEANKRQLIHMGIPEKNIEIARICTQCNHTLFFSYRHHNTGTGRFGAGIMLKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXT8</accession>
    <name>A0A0M2UXT8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Lipid-A-disaccharide synthase</fullName>
            <ecNumber evidence="2">2.4.1.182</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_00595</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Condensation of UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>a lipid X + a UDP-2-N,3-O-bis[(3R)-3-hydroxyacyl]-alpha-D-glucosamine = a lipid A disaccharide + H(+) + UDP</text>
            <dbReference type="Rhea" id="RHEA:67828"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58223"/>
            <dbReference type="ChEBI" id="CHEBI:137748"/>
            <dbReference type="ChEBI" id="CHEBI:176338"/>
            <dbReference type="ChEBI" id="CHEBI:176343"/>
            <dbReference type="EC" id="2.4.1.182"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.182" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000083">
        <property type="protein sequence ID" value="KKO20667.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20667">
        <property type="protein sequence ID" value="KKO20667"/>
        <property type="gene ID" value="BROFUL_00595"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.750"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008915">
        <property type="term" value="F:lipid-A-disaccharide synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009245">
        <property type="term" value="P:lipid A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003835">
        <property type="entry name" value="Glyco_trans_19"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30372">
        <property type="entry name" value="PTHR30372"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02684">
        <property type="entry name" value="LpxB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00215">
        <property type="entry name" value="lpxB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="5" id="KW-0441">Lipid A biosynthesis</keyword>
    <keyword evidence="4" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00020902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00029342"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO20667.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="376" mass="42556" checksum="352C4D418CA55C39" modified="2015-11-11" version="1">MPDMYKVFISAGDSSGDIHGANLMSCMKEKNPRIQFYGLGKNRMKQAGLHCLHDMSAKSLMWLHVLTELTTFFNIKKDCVRFLQRDRPRVVILIDYCGFNFHLARAAKKLKIPVVYYICPQLWAHGPWRVKKMKKLVDKLIVIYPFEKPFYEAAAIPVTYVGHPLFDEMHIKAVDEGTVSELKKTGEPIISFLPGSRRQEIVRLLPLFLRAAELIYQSNPAAQFLVSCSEEHYAPLIQDIVRQTTIPCKIIQGSAHEIIKASSLCIAGAGTITLQIASYLKPMVILYKVSPFAYFIARPFLTTPYIGLVNALAQETIVPELLMCRKNYRWLAREAMQLLSNSQKRQACIDELTSLIGEIGRPGASEHAAEEIVKLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXX4</accession>
    <name>A0A0M2UXX4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00323</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000040">
        <property type="protein sequence ID" value="KKO20943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20943">
        <property type="protein sequence ID" value="KKO20943"/>
        <property type="gene ID" value="BROFUL_00323"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="161" mass="18943" checksum="A057423A1C862777" modified="2015-11-11" version="1">MRKRFEQQRKLRVISISEVKLPLKSRDELPPILRALQHIYVTQELNEEAAKDQVKRYLGLARCLSEKIDERMLAIYGRMLAINQAAVCGVKLDRLEYFHRMLKRHIELVERMVVRGEQIPVEEKVYSLFEPHTEWLHKGKANKRVELGHNILVASVNEVFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXZ9</accession>
    <name>A0A0M2UXZ9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Branched-chain amino acid aminotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_00544</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000076">
        <property type="protein sequence ID" value="KKO20732.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20732">
        <property type="protein sequence ID" value="KKO20732"/>
        <property type="gene ID" value="BROFUL_00544"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.683"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008696">
        <property type="term" value="F:4-amino-4-deoxychorismate lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046656">
        <property type="term" value="P:folic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017824">
        <property type="entry name" value="Aminodeoxychorismate_lyase_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001544">
        <property type="entry name" value="Aminotrans_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018300">
        <property type="entry name" value="Aminotrans_IV_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036038">
        <property type="entry name" value="Aminotransferase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043132">
        <property type="entry name" value="BCAT-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043131">
        <property type="entry name" value="BCAT-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01063">
        <property type="entry name" value="Aminotran_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56752">
        <property type="entry name" value="SSF56752"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03461">
        <property type="entry name" value="pabC_Proteo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00770">
        <property type="entry name" value="AA_TRANSFER_CLASS_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="3 5" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU004106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU004516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20732.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="283" mass="31701" checksum="2A728869775C2CA1" modified="2015-11-11" version="1">MSSVIFLNNAFIEETAGKLQVLDRGFLYGDGLFETLRVYDRKPFRLDAHFTRLVNSARYFDIPFRYTAQNLQQIIEELLTRNGLQNAYVRMTLSRGFGMNGLITAGICQPTFLIHTKPLTAYPASLYKTGVSLVISSVRRSTTCPIAKHKTLSYLTNYLIKKEAVDQGAHDALIMNTENHITECAVSNVFIVERNAVITPSLKANLLPGVTRGVIMELCKENGVPVTEELFGLERVLAADEVFLTNSLMEVMPVSKINEHPIGKLVPDVITSLFHDKYQALTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY29</accession>
    <name>A0A0M2UY29_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7">30S ribosomal protein S5</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rpsE</name>
        <name evidence="11" type="ORF">BROFUL_01906</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body.</text>
    </comment>
    <comment type="function">
        <text evidence="7">With S4 and S12 plays an important role in translational accuracy.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Part of the 30S ribosomal subunit. Contacts proteins S4 and S8.</text>
    </comment>
    <comment type="domain">
        <text evidence="7">The N-terminal domain interacts with the head of the 30S subunit; the C-terminal domain interacts with the body and contacts protein S4. The interaction surface between S4 and S5 is involved in control of translational fidelity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 9">Belongs to the universal ribosomal protein uS5 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19379.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19379">
        <property type="protein sequence ID" value="KKO19379"/>
        <property type="gene ID" value="BROFUL_01906"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2375"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01307_B">
        <property type="entry name" value="Ribosomal_S5_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000851">
        <property type="entry name" value="Ribosomal_S5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005712">
        <property type="entry name" value="Ribosomal_S5_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005324">
        <property type="entry name" value="Ribosomal_S5_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013810">
        <property type="entry name" value="Ribosomal_S5_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018192">
        <property type="entry name" value="Ribosomal_S5_N_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13718">
        <property type="entry name" value="PTHR13718"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00333">
        <property type="entry name" value="Ribosomal_S5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03719">
        <property type="entry name" value="Ribosomal_S5_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01021">
        <property type="entry name" value="rpsE_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00585">
        <property type="entry name" value="RIBOSOMAL_S5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50881">
        <property type="entry name" value="S5_DSRBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7 8" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5 7 8" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 7" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="S5 DRBM" evidence="10">
        <location>
            <begin position="10"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008945"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016778"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01307"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO19379.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="161" mass="17058" checksum="008CA4968B735F37" modified="2015-11-11" version="1">MARLDDPMNLEETVVQVNRCTTVTKGGKSMSFSALVVVGDKKGSVGIGFGKAREVPNAVSKAVKEAKKQMVKIPLKGDTIPHMSWGRFKAANIFLKPASPGTGLKAGASARAVLELAGIKNILSKCFGKRNPLNVAKATLMGLKALRTKEEIGALRGVKIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY51</accession>
    <name>A0A0M2UY51_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Uridylate kinase</fullName>
            <shortName evidence="6">UK</shortName>
            <ecNumber evidence="6">2.7.4.22</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Uridine monophosphate kinase</fullName>
            <shortName evidence="6">UMP kinase</shortName>
            <shortName evidence="6">UMPK</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">pyrH</name>
        <name evidence="8" type="ORF">BROFUL_00471</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the reversible phosphorylation of UMP to UDP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>ATP + UMP = ADP + UDP</text>
            <dbReference type="Rhea" id="RHEA:24400"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
            <dbReference type="ChEBI" id="CHEBI:58223"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.22"/>
        </reaction>
    </comment>
    <comment type="activity regulation">
        <text evidence="6">Inhibited by UTP.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 6">Pyrimidine metabolism; CTP biosynthesis via de novo pathway; UDP from UMP (UMPK route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homohexamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the UMP kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.22" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000062">
        <property type="protein sequence ID" value="KKO20802.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20802">
        <property type="protein sequence ID" value="KKO20802"/>
        <property type="gene ID" value="BROFUL_00471"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.586"/>
    <dbReference type="UniPathway" id="UPA00159">
        <property type="reaction ID" value="UER00275"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033862">
        <property type="term" value="F:UMP kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044210">
        <property type="term" value="P:'de novo' CTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04254">
        <property type="entry name" value="AAK_UMPK-PyrH-Ec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01220_B">
        <property type="entry name" value="PyrH_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036393">
        <property type="entry name" value="AceGlu_kinase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001048">
        <property type="entry name" value="Asp/Glu/Uridylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011817">
        <property type="entry name" value="Uridylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015963">
        <property type="entry name" value="Uridylate_kinase_bac"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00696">
        <property type="entry name" value="AA_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005650">
        <property type="entry name" value="Uridylate_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53633">
        <property type="entry name" value="SSF53633"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02075">
        <property type="entry name" value="pyrH_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 6" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="AA_kinase" evidence="7">
        <location>
            <begin position="28"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="33"/>
            <end position="36"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="75"/>
        </location>
        <ligand>
            <name>UMP</name>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="76"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="80"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="95"/>
        </location>
        <ligand>
            <name>UMP</name>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="156"/>
            <end position="163"/>
        </location>
        <ligand>
            <name>UMP</name>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="183"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="184"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="189"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="192"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001018"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004791"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01220"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00696"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20802.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="259" mass="28196" checksum="A9F654007D80E4A7" modified="2015-11-11" version="1">MSGLRWENANRRSYCSVASSMKRARHYKRVLLKLSGEGFGDDDGHGLEMERFVALAKEIQKLSRTGVELAIVVGGGNILRGAKFGGRGKSRVQADHVGMIATAVNALLLQDTLERFDISARVVSAIEIANITEPFVLRNCLQYLQEKKVVIFAGGTGNPYFTTDTAAALRAVEIGADVMLKATQVDGVYTDDPVKNASATLYKKLSYMDVLNKRLGVMDLTAISLSMENKLPIIVFNINKYENIGKAISGKAVGTYIGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY74</accession>
    <name>A0A0M2UY74_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00463</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000061">
        <property type="protein sequence ID" value="KKO20807.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20807">
        <property type="protein sequence ID" value="KKO20807"/>
        <property type="gene ID" value="BROFUL_00463"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044036">
        <property type="entry name" value="DUF5752"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19027">
        <property type="entry name" value="DUF5752"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="232"/>
            <end position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20807.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="251" mass="29138" checksum="20A2826386398220" modified="2015-11-11" version="1">MISLPKAKEPFKFYTQTHIPELTGLRASNLQELLAVIKTVPGSVIYYHTHRFLQQHQYLSPEPPNDFAYWITGIIGEEELGESLYSIDTIQYTTIRELRDEIIRTIEDYIKKYPRSLQRFTIPGDEFHFIKSVSFIYQTPYTASDLKEFQAALQRVTLESIYFHMFEARLRIGKGINDFSKWLEDGLAESKLANKIAALDPYTHTTENLRFTLVKLIEKQIVDHMKKPQETEIILSNPNESEKAKSGTQNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY81</accession>
    <name>A0A0M2UY81_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glyco_trans_2-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01355</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000140">
        <property type="protein sequence ID" value="KKO19926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19926">
        <property type="protein sequence ID" value="KKO19926"/>
        <property type="gene ID" value="BROFUL_01355"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="18"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="247" mass="28389" checksum="E1FC4EB21C7E09C1" modified="2015-11-11" version="1">MVPVPYDDKSQAMNPDISLVIPVYNEAENIDPLGLSIISAMQGQNYEVILVDDGSTDGSGQKLNEWCARYTNFRTIHFRRNAGQTAALDAGFKRASGRCVVSMDADMQNDPADIPKLLEKLKTYDMVCGWRQKRNDPWIKRISAKVANFIRNKLSQEDIKDTGCSLKAYRRECLGRIKLYNGMHRFLPTLFRMEGFTVAEIIVNHYPRRFGKSKYGISNRAFRAFIDLLAVRWMKKRKLHYEVDHDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYG6</accession>
    <name>A0A0M2UYG6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01298</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20026">
        <property type="protein sequence ID" value="KKO20026"/>
        <property type="gene ID" value="BROFUL_01298"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="12"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="44"/>
            <end position="51"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="244" mass="27586" checksum="AFABE79E6E20BFE6" modified="2015-11-11" version="1">MQRQSMNRDHCIALQDVSVGYRGHPILMDINFSLKAGEFTVMFGPNGCGKTTLFKTVLQIIPPIHGTITYGDTHYPRFGYVPQRQILDEIYPFTAEEVVLMGTFGQVKPFCPTTKTGRAWVAQCLEDVGMLDLRKRLFSELSGGQKQRILIARALATKPDILLLDEPITGVDIIAQRKIMELIILLHKKHELTIVMVTHEIHSIPKWIDNLIWINDSKVLIGNSLELLAPLLAEETSFQGTLWH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYH7</accession>
    <name>A0A0M2UYH7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01240</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000135">
        <property type="protein sequence ID" value="KKO20041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20041">
        <property type="protein sequence ID" value="KKO20041"/>
        <property type="gene ID" value="BROFUL_01240"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1536"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011703">
        <property type="entry name" value="ATPase_AAA-3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041628">
        <property type="entry name" value="ChlI/MoxR_AAA_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07726">
        <property type="entry name" value="AAA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17863">
        <property type="entry name" value="AAA_lid_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_3" evidence="1">
        <location>
            <begin position="49"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="domain" description="AAA_lid_2" evidence="2">
        <location>
            <begin position="258"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20041.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="331" mass="37585" checksum="E9F05E5D6BE3EA65" modified="2015-11-11" version="1">MKTRLKTVIRDRNFVKEKVETMKREVGKVIVGQEELIEGIIVALLSDGHILLEGYPGLGKTVAVKTVARILDAKFQRVQFTPDLIPGDITGFEMWDPETRKSRLQKGPVFTNLLLADEINRAPAKVQSALLEAMQERQVTIGRETYPLEKLFLVLATQNPIEISGTYLLPEAEIDRFMFKLKIHYPPYGDEREITERQIRDGEEELAVVLSPREVLSFRHMISEWLPLHGTSVTIKYITRLVRATRPEAGNGTIKNLVMYGASPRATIALARASRVYAFIHGDDMVLPEHIHDMAYPVLRHRIILTHEAESQGIDADDIIEKILHQVPILE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYN6</accession>
    <name>A0A0M2UYN6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DDE_Tnp_1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00567</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000079">
        <property type="protein sequence ID" value="KKO20700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20700">
        <property type="protein sequence ID" value="KKO20700"/>
        <property type="gene ID" value="BROFUL_00567"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002559">
        <property type="entry name" value="Transposase_11"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01609">
        <property type="entry name" value="DDE_Tnp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DDE_Tnp_1" evidence="1">
        <location>
            <begin position="30"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="270" mass="31849" checksum="411B53403A8CFBDE" modified="2015-11-11" version="1">MSIFSANIPLFKDKIQIAMELFDTCSKTMDFSGIVFDSWYATTRLLTHIHKKGKIFYSEIKSNRNIFMRHPVKKNKCLVKPDELVTLIKKHFWDKIKFVKFKTTDGSEVSHKSYSFEAKLKDCDVPIKLVVILGKWNKEDDYNYHILITNDLRASAKMIITNYLLRWGIEHCFKELKDTFCFDHYQVRHINKIERYWNLCLVAWTLTYWIKQNAYLAKILETKPTTFNEIKQAVNSMLEFAATNALSKNEKLANGYFKIKSKRLKKKCAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYZ4</accession>
    <name>A0A0M2UYZ4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">RNA polymerase sigma factor</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_01034</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the sigma-70 factor family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20186">
        <property type="protein sequence ID" value="KKO20186"/>
        <property type="gene ID" value="BROFUL_01034"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1296"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000943">
        <property type="entry name" value="RNA_pol_sigma70"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007624">
        <property type="entry name" value="RNA_pol_sigma70_r3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007630">
        <property type="entry name" value="RNA_pol_sigma70_r4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04539">
        <property type="entry name" value="Sigma70_r3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04545">
        <property type="entry name" value="Sigma70_r4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000770">
        <property type="entry name" value="RNA_pol_sigma-SigE/K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00046">
        <property type="entry name" value="SIGMA70FCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00715">
        <property type="entry name" value="SIGMA70_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00716">
        <property type="entry name" value="SIGMA70_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0731">Sigma factor</keyword>
    <keyword evidence="4 5" id="KW-0804">Transcription</keyword>
    <keyword evidence="1 5" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="RNA_pol_sigma70" evidence="6">
        <location>
            <begin position="48"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="domain" description="RNA_pol_sigma70" evidence="7">
        <location>
            <begin position="219"/>
            <end position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS00715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS00716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="253" mass="29180" checksum="0CD06476A3C8F3C4" modified="2015-11-11" version="1">MSSEEEKNVTKRVVEGDGEAREKLIRSNLRLVVSIAKEYINRGLSFLDLIEEGNLGLIRAVQGFDPSTGYKFSTYATWWIKQAVRRALTDKARMIRIPSYMLEKISRLKTTSNHLLDSLERPPSYNEIAEEMDITAKKVELIEHATRSTMSLDGEGFTGSDLIWALSNVLPDERTLPPEDEVEERYERESLEKFLEIIDKREATVIKLRYGLVDGDPKTLEEIGALLHISRERVRQIEKETIQKLHYILTKEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ06</accession>
    <name>A0A0M2UZ06_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00413</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000056">
        <property type="protein sequence ID" value="KKO20855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20855">
        <property type="protein sequence ID" value="KKO20855"/>
        <property type="gene ID" value="BROFUL_00413"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="321"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="360"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="387"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="129"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="643" mass="73299" checksum="8E4920EFF43511A0" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ95</accession>
    <name>A0A0M2UZ95_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01490</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000153">
        <property type="protein sequence ID" value="KKO19794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19794">
        <property type="protein sequence ID" value="KKO19794"/>
        <property type="gene ID" value="BROFUL_01490"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="33" mass="3826" checksum="E129B97C50621B09" modified="2015-11-11" version="1" fragment="single">MSLFMVLKFMLKAGLPAEFFYLPVDVLNFLSRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZQ5</accession>
    <name>A0A0M2UZQ5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01322</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000138">
        <property type="protein sequence ID" value="KKO19974.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19974">
        <property type="protein sequence ID" value="KKO19974"/>
        <property type="gene ID" value="BROFUL_01322"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19974.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="194" mass="23159" checksum="28F336A7146E23C1" modified="2015-11-11" version="1" fragment="single">HQLLLTLQGSGGFPFKHYIDHPIVYDSYKIWKETLSLWRKTKLHYPLPPFPPFNLPNQAMLSLDKGTPDIEYIFNNLDFYSNEHERLQVYRIRISSPGGFSFQGIGKILKEIREMVKDLWYRNNQEKTKGELEIIKRYLDICRENEEIKVPLPKYLQKRNILIDETYKNIKQLRELESQNKLDDVGENIDYIPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZS6</accession>
    <name>A0A0M2UZS6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Proton-translocating NAD(P)(+) transhydrogenase</fullName>
            <ecNumber evidence="2">7.1.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">pntB</name>
        <name evidence="10" type="ORF">BROFUL_01258</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H(+)(in) + NAD(+) + NADPH = H(+)(out) + NADH + NADP(+)</text>
            <dbReference type="Rhea" id="RHEA:47992"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="7.1.1.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.1" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO19989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19989">
        <property type="protein sequence ID" value="KKO19989"/>
        <property type="gene ID" value="BROFUL_01258"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1555"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034300">
        <property type="entry name" value="PNTB-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02233">
        <property type="entry name" value="PNTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0521">NADP</keyword>
    <keyword evidence="10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-1278">Translocase</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="30"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="53"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="83"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="109"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="155"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="178"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="205"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="231"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="domain" description="PNTB" evidence="9">
        <location>
            <begin position="3"/>
            <end position="449"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02233"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="460" mass="49524" checksum="B9D72321443D0863" modified="2015-11-11" version="1">MITIAYILSSIMVIFGVKGLSSSKTAHRGNMLAMIAMLIAIVITLLHKKIHDFSFIIASSFIGSTVSVILAKKAKLTEVSRIVAFYNGLGGAVSVSVALIEHYLTIREIQLNIIISIVLGLLIGMVTITGSLVVYAKLRDFVKPAPGVCEIKHSLHLLLFIVCLVFCVIISFSQTCGAYLLAFFVISSALGILLVIPIGGANMQVVVSLLISYAGFAAVATGFLLSSNIFIMSGIIICTFCIALTIITCNTMNRSLPADMLKSVKVTVLEDSDRNDHHKVIAHAPEDSIILLENAQSIIIVPGYGLVVAQAQEILHDLENVLTKRGANVRYALHPAAGRVPGQLPALLKEAKVSPNLLFATETINDDFQNTDVALVIGANDIINPAAKNTNTCLLHDMPVLNANKAKTVIICKRSLSPGFSGADSELFYNQKTLMIFGDVKDSVTTMVKFLKARAEEKEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZV9</accession>
    <name>A0A0M2UZV9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Endonuclease/Exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00783</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000099">
        <property type="protein sequence ID" value="KKO20496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20496">
        <property type="protein sequence ID" value="KKO20496"/>
        <property type="gene ID" value="BROFUL_00783"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.991"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="SSF56219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="2" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endo/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="6"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="326" mass="36125" checksum="B2902C2AC0AF7A08" modified="2015-11-11" version="1">MFLRIATYNLENLDKGPNVVPALADRIRIMRPQLQRLRADILCFQEVNSQGASDSRTLAALDDLLAGTEYAGFHRETTSTTSGALYDVRNIVTLSRFSFAAPAQIIRDSSGPRPQYQMATANPPDTLANPIEWERPMLYTQIRVATGMNLHLINVHLKSKLASSIPGQKLDNSTWKTVSAWAEGSFISSMKRVGQALQARLLIDDIFDQQGEDTLIALCGDFNAGADEVPVQAICGPVEETGNSEHAPRIMIPCEKNIPESSRFSLLHLGKGEMLDHIIVSRPLLRFFRNAEIHNEALPDESGAFRQDVKFPESDHAPVIAEFEIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V049</accession>
    <name>A0A0M2V049_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Chromosome partitioning protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00710</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ParB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20591">
        <property type="protein sequence ID" value="KKO20591"/>
        <property type="gene ID" value="BROFUL_00710"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.902"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041468">
        <property type="entry name" value="HTH_ParB/Spo0J"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004437">
        <property type="entry name" value="ParB/RepB/Spo0J"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003115">
        <property type="entry name" value="ParB/Sulfiredoxin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036086">
        <property type="entry name" value="ParB/Sulfiredoxin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17762">
        <property type="entry name" value="HTH_ParB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02195">
        <property type="entry name" value="ParBc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00470">
        <property type="entry name" value="ParB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110849">
        <property type="entry name" value="SSF110849"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00180">
        <property type="entry name" value="parB_part"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ParB" evidence="3">
        <location>
            <begin position="31"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="288" mass="32241" checksum="CC49F2769BAABF3F" modified="2015-11-11" version="1">MSKKEKLSRSLQSLLGGVIGIEANAGQDVIIKINPEDVQPSDYQPRHLFKEDEMQGLMASIKKHGILQPVIVKPLSHGYMLIAGERRWRAARQLGLKEIPAIVRQSDGVDTLEIALIENIQREDLNPIEKAKGFRELISKFDLTQEQVAKAMGKDRSSVANYLRLLDLPQDIQEYVSRGTLSMGHARAILTVGDCEIQRDLCERILKDGLSVRDVEEIAALGKKQTKPKKLASAKASTPHIEDLEDRFRRFFGTKVTIKERNGKGKILISFHSSDEFSRIAHALGISL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0A9</accession>
    <name>A0A0M2V0A9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">2-oxoglutarate ferredoxin oxidoreductase beta subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00614</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20631.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20631">
        <property type="protein sequence ID" value="KKO20631"/>
        <property type="gene ID" value="BROFUL_00614"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.777"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011766">
        <property type="entry name" value="TPP_enzyme-bd_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02775">
        <property type="entry name" value="TPP_enzyme_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TPP_enzyme_C" evidence="1">
        <location>
            <begin position="53"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20631.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="248" mass="27266" checksum="B298AC4B719C3672" modified="2015-11-11" version="1">MDKDSNFKRYLKLDLLPTPWCPGCGNGIALKTICQAFDELDLPKQGTVVVSGIGCSGRSAGFFDLDSVHTAHGRAIPVAEGIKYANDALKVVVVSGDGDLLGIGGNHLLHAIRRNTNITVICYANEIYGMTGGQVSPTTPHSTKTLTTPQGNPDYPADVQALFKSNNCFYARTTAYHLNHMKKCFLEALQFKGFSFVEARTMCIVNYGRRLGYKNSNEMLLHYKEFYKVNDYAESLSPEEIGILKVSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0M5</accession>
    <name>A0A0M2V0M5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Ca2+/Na+ antiporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_01014</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000119">
        <property type="protein sequence ID" value="KKO20269.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20269">
        <property type="protein sequence ID" value="KKO20269"/>
        <property type="gene ID" value="BROFUL_01014"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1273"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1420.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004481">
        <property type="entry name" value="K/Na/Ca-exchanger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004837">
        <property type="entry name" value="NaCa_Exmemb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044880">
        <property type="entry name" value="NCX_ion-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10846">
        <property type="entry name" value="PTHR10846"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01699">
        <property type="entry name" value="Na_Ca_ex"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="38"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="68"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="100"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="Na_Ca_ex" evidence="6">
        <location>
            <begin position="5"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20269.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="123" mass="13199" checksum="7F09994EB4DCBC62" modified="2015-11-11" version="1">MVLQIVLLFAGLAGLYYGAEWLVGGASRFARSFQIKPVVIGLTIVAFGTSTPELVTSVTAGMRHLSDIAMGNIIGSNIANIGLILGLSALVRPLTIDTKLLYREMPIVVGISFLLYFMVWDAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0T6</accession>
    <name>A0A0M2V0T6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00931</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000112">
        <property type="protein sequence ID" value="KKO20349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20349">
        <property type="protein sequence ID" value="KKO20349"/>
        <property type="gene ID" value="BROFUL_00931"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="518" mass="59536" checksum="817540BD107BF6F2" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0W5</accession>
    <name>A0A0M2V0W5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">UDP-N-acetylmuramate:L-alanine ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_00921</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000110">
        <property type="protein sequence ID" value="KKO20364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20364">
        <property type="protein sequence ID" value="KKO20364"/>
        <property type="gene ID" value="BROFUL_00921"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1160"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004326">
        <property type="term" value="F:tetrahydrofolylpolyglutamate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018109">
        <property type="entry name" value="Folylpolyglutamate_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036565">
        <property type="entry name" value="Mur-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004101">
        <property type="entry name" value="Mur_ligase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036615">
        <property type="entry name" value="Mur_ligase_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013221">
        <property type="entry name" value="Mur_ligase_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000713">
        <property type="entry name" value="Mur_ligase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01225">
        <property type="entry name" value="Mur_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02875">
        <property type="entry name" value="Mur_ligase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08245">
        <property type="entry name" value="Mur_ligase_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53244">
        <property type="entry name" value="SSF53244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53623">
        <property type="entry name" value="SSF53623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01011">
        <property type="entry name" value="FOLYLPOLYGLU_SYNT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="1" id="KW-0132">Cell division</keyword>
    <keyword evidence="2" id="KW-0133">Cell shape</keyword>
    <keyword evidence="5" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="9" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mur_ligase" evidence="6">
        <location>
            <begin position="1"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_M" evidence="8">
        <location>
            <begin position="98"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_C" evidence="7">
        <location>
            <begin position="291"/>
            <end position="350"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF08245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="444" mass="48230" checksum="B1815F5632C99480" modified="2015-11-11" version="1">MSAIAQVLKAQGHMVSGSDRNFDKHITTDVFSKLATQGIAIHLQNGSGINENTDYVIVSTAIEEDNPDIKKARALNKAILKRAALLAEMFNPRYGIAIGGTNGKTTVSCMVGYILDSAGLSPTIIVGGCIKNYAHDAFLGNAKAGTSNIISIEADESDGSIIYYTPRVSVITNISKDHKTIEEVSKMFLVLSQNTKDTLIINADCPYLKKVDFNHKKVLTYGLCNPAAALSANNIVYQPFQSRFAVDGHPFQINLPGSYNVSNALAAIAVARSLHIPDVTTSVALGQFKGVQRRMDLIGEVNGIKVIDDYAHNPEKIMAAITAVKRGCKRAIAVFQPHGYGPTNFMREELINAFVRVLSPEDILFMPEIFYAGGTTRRNVSSSDIIMRVKESGKNALFVEDRQDIISAVKTCARPGDAILVMGARDNTLTEFSHNILHVLQNAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1R8</accession>
    <name>A0A0M2V1R8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative multidrug efflux pump</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00617</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20634">
        <property type="protein sequence ID" value="KKO20634"/>
        <property type="gene ID" value="BROFUL_00617"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.782"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032317">
        <property type="entry name" value="HlyD_D23"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006143">
        <property type="entry name" value="RND_pump_MFP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16576">
        <property type="entry name" value="HlyD_D23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01730">
        <property type="entry name" value="RND_mfp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HlyD_D23" evidence="3">
        <location>
            <begin position="19"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="96"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="341" mass="38041" checksum="B5E7AE99BCA7C0F3" modified="2015-11-11" version="1">MDTTYTHDYVANIHSLQHVELSARVKGYIEKIHVDEGEIVKAEQVLFSISPQEYEVELLKAKAMLKSAIADAKAAELDAQNVKILVEKNIVAKTELEMAQAKLDALHAKIDEAKSYMASAELNLSYTVIKAPFDGIIDRIPNKAGSLVDEGTLLTTLSDNKKVFAYFNVPEKEYLDFTTLIDSEKKSDVVFVLANNQIHKYTGCIDTVAGKIDKNTGNIAFRACFPNPELLLRQGSSGEVRIVKEEKNALVIPQKATFEIQDKIYVFTVDSDDIIKMKSIVPKLRIPHLYVIESGLSPNDRIVYEGIQQAKEGDKIIPEVISMKQILAEQSRAQAVRMAQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1V3</accession>
    <name>A0A0M2V1V3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00566</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000079">
        <property type="protein sequence ID" value="KKO20699.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20699">
        <property type="protein sequence ID" value="KKO20699"/>
        <property type="gene ID" value="BROFUL_00566"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20699.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="109" mass="12601" checksum="8F02DF8E27086AE5" modified="2015-11-11" version="1">MYTPRIAKVGLTFEHSLKVLENTKRRLYAALSIFKEDEEAPEVAIERLWGALGKINREETAELINDLESRALLEVTQKAEPRTIRLHDLLRDLMHTELGETGSMRHVNY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V244</accession>
    <name>A0A0M2V244_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00486</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000066">
        <property type="protein sequence ID" value="KKO20784.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20784">
        <property type="protein sequence ID" value="KKO20784"/>
        <property type="gene ID" value="BROFUL_00486"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20784.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="102" mass="11314" checksum="F198614378FA1357" modified="2015-11-11" version="1">MKRFAKNHVVNEDGFPCTDYDSCKGAGGSCVVVWGGGASPICFIKITGIKKGCVCQITEKYEYLALSVSFGWPPANGKKSARFLRHEHIRYPRLRNLSRTTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2C3</accession>
    <name>A0A0M2V2C3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00434</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000057">
        <property type="protein sequence ID" value="KKO20849.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20849">
        <property type="protein sequence ID" value="KKO20849"/>
        <property type="gene ID" value="BROFUL_00434"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.541"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018632">
        <property type="entry name" value="AAA-associated_dom_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09821">
        <property type="entry name" value="AAA_assoc_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="14"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="47"/>
            <end position="54"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20849.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="437" mass="48737" checksum="5EE72E7AEDE3A077" modified="2015-11-11" version="1">MAVNHTNNALLELRHVQQIYTSGRRRFIAVQEVNLTISEGEFVALIGPSGCGKSTLLRIITGLQKPSEGQVLYRGQLLKSVNPHATIVFQTFALFPWLTVFENVALALKARGIPSNIRTPRALDLIDRVGLDGFETAYPRELSGGMRQKVGFARAMAVEPELLCLDEPFSALDVLSAESLRGELMELWTSGSIPTKAILMVSHNIEEAVFMADRIVVMDKEPGRIIAEVKIALRRPRQRKSNEFQKVVDEVYSMLAGQTEAEAIELGTAPGEQGRTRALPKVNISDLAGLLEQLSELPGNRFDIYRLPDELGVDSYHVLSLTEAAEILGFATVEKGDISLTALGETFAEAGIQARKEIFATRIRRLPLMRWLTTMLTNSENHALDWDIIHTALELEFPEDEAEKQLDNLINWGRYAELISYNDDKALIYLETQPQPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPG1</accession>
    <name>A0A0M2UPG1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03286</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000301">
        <property type="protein sequence ID" value="KKO18008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18008">
        <property type="protein sequence ID" value="KKO18008"/>
        <property type="gene ID" value="BROFUL_03286"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="251" mass="28882" checksum="2344DC2B75F14009" modified="2015-11-11" version="1">MQDFTLTNLSDQVKKTLEPFLRDIFGHCKEDVLSLYVIGSAVTKDFHPRHSDINTLLVVNQVNIPLFDYIAILGKRYGKKKIRAPLIMTHDYIIRSLEVFPLEFLEMKLVHLLVYGSDVLKDIRIGKADIRHQCERELKGKLQHLCQGYIRAMGSRKALTDVFVGSLSGYFPVLRGLLFLYGQRIPQGKNEVLSAMEQCFTIDMSVYRTLLGLRVNDTCPSLDTLREIFEKLYRILDIVIKKVDEFEITPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPU4</accession>
    <name>A0A0M2UPU4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Putative glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_03368</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial sugar transferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17917">
        <property type="protein sequence ID" value="KKO17917"/>
        <property type="gene ID" value="BROFUL_03368"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4143"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003362">
        <property type="entry name" value="Bact_transf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017475">
        <property type="entry name" value="EPS_sugar_tfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02397">
        <property type="entry name" value="Bac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03025">
        <property type="entry name" value="EPS_sugtrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 9" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="14"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="51"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="82"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="108"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="277"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="domain" description="Bac_transf" evidence="8">
        <location>
            <begin position="275"/>
            <end position="458"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02397"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO17917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="463" mass="53371" checksum="A31832BE87E8CEA2" modified="2015-11-11" version="1">MTIKNFNYPISKRLILLIAGDLLMVNGSVFLSAILRLGVNDGWDYIRNNPASFILTGFIFIFTFFFTELYDTQKNFKAARNIISIVFASANAFFITTFFFYINWSLRIGRGVFILNGAFVTFFIIGWRIGYSYLLDQPIFKRTVLIVGAGWAGKTILHEIVRAKKTGLRVAGFIDDNPLHEKKTVEGFPIFGNRYVLPEIIHQNEISLIVNAITHEKHADLIKTLINCSWNGIEIVDMPTLYEQLTGKIPFKHINDMWMLHVVLSKPKLYGRLVKPVIEMFFALMLFALLIPAMVIIAIVIKTDSRGRIFYTQERIGKDGKEFTIIKFRTMVENAELNTGAVYTSDNDPRITKVGRFFRKWRLDEIPQLLNVIRGDMSLIGPRPERRVFIKNFEEIIPFYTQRLAVRPGITGWAQVKYSYASSTEQTEEKLKYDLYYIKNMSFILDFVVLLKTIKVVLVGRGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPW7</accession>
    <name>A0A0M2UPW7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">1-deoxy-D-xylulose 5-phosphate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03182</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18133.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18133">
        <property type="protein sequence ID" value="KKO18133"/>
        <property type="gene ID" value="BROFUL_03182"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3924"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008661">
        <property type="term" value="F:1-deoxy-D-xylulose-5-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005477">
        <property type="entry name" value="Dxylulose-5-P_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033248">
        <property type="entry name" value="Transketolase_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43322">
        <property type="entry name" value="PTHR43322"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02780">
        <property type="entry name" value="Transketolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52922">
        <property type="entry name" value="SSF52922"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transketolase_C" evidence="3">
        <location>
            <begin position="36"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02780"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18133.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="185" mass="20571" checksum="59C614B267D226A8" modified="2015-11-11" version="1">MLKIALESGKPVAIRYPKEDIPEEKLSPQYKKFEIGKAEILREGPDGVLLAYGAMVYRCMDAAERLSEKGVEVTVVNARFAKPLDKELILRLVRNNKLILTAEDHALMGGFGSAVLELVSDEGENGNKIVRMGIPDRFMEHGPRNLILKNIGLDENGIAEKFIAMLDLMDMRGSFTKAGKQRLTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQE2</accession>
    <name>A0A0M2UQE2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative PTS system component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03040</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18313.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18313">
        <property type="protein sequence ID" value="KKO18313"/>
        <property type="gene ID" value="BROFUL_03040"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00211">
        <property type="entry name" value="PTS_IIA_fru"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016152">
        <property type="entry name" value="PTrfase/Anion_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002178">
        <property type="entry name" value="PTS_EIIA_type-2_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00359">
        <property type="entry name" value="PTS_EIIA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55804">
        <property type="entry name" value="SSF55804"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51094">
        <property type="entry name" value="PTS_EIIA_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PTS EIIA type-2" evidence="1">
        <location>
            <begin position="19"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18313.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="166" mass="18108" checksum="7AFBBF8D8313D413" modified="2015-11-11" version="1">MPDCKGITLVKGVGMKPSDVLTKERIIINISGEGKTDVLGKMVQVAGTSGKVTSETDLLRKVMEREKIRSTGIGGGVGIPHAQTSCVTDIVGCLAISQPGVEFNAIDMQPVHVIFLIATKERFDNKYLALLSRVARLFVNESFKQKIMKSTSSEEIMNLIIENEKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQF7</accession>
    <name>A0A0M2UQF7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02990</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000281">
        <property type="protein sequence ID" value="KKO18333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18333">
        <property type="protein sequence ID" value="KKO18333"/>
        <property type="gene ID" value="BROFUL_02990"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002763">
        <property type="entry name" value="DUF72"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036520">
        <property type="entry name" value="UPF0759_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30348">
        <property type="entry name" value="PTHR30348"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01904">
        <property type="entry name" value="DUF72"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117396">
        <property type="entry name" value="SSF117396"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="87" mass="9978" checksum="920CC2EE8D988714" modified="2015-11-11" version="1">MPYNPTVTTDLGYFRFHGRNANWFEATASERYDYLYTPDELKVFVSDIKKISGTTRNTLVMFNNCHTGKSVKNALGMLKLLEGYFPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQG8</accession>
    <name>A0A0M2UQG8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8 9">Chorismate synthase</fullName>
            <shortName evidence="8">CS</shortName>
            <ecNumber evidence="4 8 9">4.2.3.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">5-enolpyruvylshikimate-3-phosphate phospholyase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">aroC</name>
        <name evidence="11" type="ORF">BROFUL_02965</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8 9">
            <text>5-O-(1-carboxyvinyl)-3-phosphoshikimate = chorismate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:21020"/>
            <dbReference type="ChEBI" id="CHEBI:29748"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57701"/>
            <dbReference type="EC" id="4.2.3.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8 9">
            <name>FMNH2</name>
            <dbReference type="ChEBI" id="CHEBI:57618"/>
        </cofactor>
        <text evidence="8 9">Reduced FMN (FMNH(2)).</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 8 9">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 7/7.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8 9">Belongs to the chorismate synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.3.5" evidence="4 8 9"/>
    <dbReference type="EMBL" id="LAQJ01000279">
        <property type="protein sequence ID" value="KKO18343.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18343">
        <property type="protein sequence ID" value="KKO18343"/>
        <property type="gene ID" value="BROFUL_02965"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3670"/>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00090"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004107">
        <property type="term" value="F:chorismate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:cellular amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd07304">
        <property type="entry name" value="Chorismate_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00300">
        <property type="entry name" value="Chorismate_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000453">
        <property type="entry name" value="Chorismate_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035904">
        <property type="entry name" value="Chorismate_synth_AroC_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020541">
        <property type="entry name" value="Chorismate_synthase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21085">
        <property type="entry name" value="PTHR21085"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01264">
        <property type="entry name" value="Chorismate_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001456">
        <property type="entry name" value="Chorismate_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103263">
        <property type="entry name" value="SSF103263"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00033">
        <property type="entry name" value="aroC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00787">
        <property type="entry name" value="CHORISMATE_SYNTHASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00788">
        <property type="entry name" value="CHORISMATE_SYNTHASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00789">
        <property type="entry name" value="CHORISMATE_SYNTHASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8 9" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="6 8 9" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0274">FAD</keyword>
    <keyword evidence="8" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="8" id="KW-0288">FMN</keyword>
    <keyword evidence="7 8 9" id="KW-0456">Lyase</keyword>
    <keyword evidence="10" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0521">NADP</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="127"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="40"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="46"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="117"/>
            <end position="119"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="239"/>
            <end position="240"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="291"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="306"/>
            <end position="310"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="332"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00300"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO18343.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="380" mass="41501" checksum="EBBF41F6225F5301" modified="2015-11-11" version="1">MLYFKTAGESHGKCLIAIIEGFPAGVFIDTPVINDELKRRQGGMGRGGRMQIEDDSVEILCGIRKNTTIGSPLCLMIKNRDHKIDELPAVIRPRPGHADLSGVIKYHEQDARNILERASARETAARVAAGAVAKILLASFGIVVFGYVQGIGGITSDKFLHRKDLDVARAIRDKSPLYCIDQGIEDKIVEKIRQTAEKGDSLGGVIEVITYGLPVGLGSHTQWDLKLDARLAYAVMSIQAIKGVELGMGCNAAKRFGSEVHDEIFYEKPRQNKPVTGGFRRRTNNAGGIEGGISNGEPVVVRAYMKPIPTLKKPLRSVDLLTKEPIAATYERSDVCAVPAASVVCEAMVAFEIARAFLEKFGTDSIDEVRRNYEGYLCNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQH4</accession>
    <name>A0A0M2UQH4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ribosomal RNA small subunit methyltransferase E</fullName>
            <ecNumber evidence="6">2.1.1.193</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_03421</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 6">Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>S-adenosyl-L-methionine + uridine(1498) in 16S rRNA = H(+) + N(3)-methyluridine(1498) in 16S rRNA + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42920"/>
            <dbReference type="Rhea" id="RHEA-COMP:10283"/>
            <dbReference type="Rhea" id="RHEA-COMP:10284"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74502"/>
            <dbReference type="EC" id="2.1.1.193"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the RNA methyltransferase RsmE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.193" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000312">
        <property type="protein sequence ID" value="KKO17910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17910">
        <property type="protein sequence ID" value="KKO17910"/>
        <property type="gene ID" value="BROFUL_03421"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006700">
        <property type="entry name" value="rRNA_ssu_MeTrfase-E"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30027">
        <property type="entry name" value="PTHR30027"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04452">
        <property type="entry name" value="Methyltrans_RNA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015601">
        <property type="entry name" value="MTase_slr0722"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="SSF75217"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="SSF88697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00046">
        <property type="entry name" value="TIGR00046"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00025699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR015601"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO17910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="245" mass="27483" checksum="850D3A5B472D9155" modified="2015-11-11" version="1">MHQDRFYLSYTPETQEIWLDNGEAHHVLHVKRAKPGTKITLFDGRGFEYLAHVTEILRDKVKVFIEQSRAVDRESPVDITIAFSIPKGKHAAFLIQKCSELGIKTLIPIFCRRSVVDIRDTAGEKSERWSKLAIEASKQCKRNCVTQIENLMPFADLVKNACHYDLPLIACTEPHAKTLKHLVREYPAAKKIICIIGPEGGFAENEIRAAEEAGFMPVVIGNSTLRVETAAIAISSMLLYAYSDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQI2</accession>
    <name>A0A0M2UQI2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03176</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18127">
        <property type="protein sequence ID" value="KKO18127"/>
        <property type="gene ID" value="BROFUL_03176"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="75" mass="8109" checksum="3E25DE7F49FFEAB7" modified="2015-11-11" version="1">MGGHLSSLVVASEIKRFTQRCYRSGPLHPSLFNLSPSGVCHASDVTTGAVGSYIKSVQTRTFYRGNDPAISPLFH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQN3</accession>
    <name>A0A0M2UQN3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">50S ribosomal protein L28</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rpmB</name>
        <name evidence="5" type="ORF">BROFUL_03126</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the bacterial ribosomal protein bL28 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000287">
        <property type="protein sequence ID" value="KKO18177.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18177">
        <property type="protein sequence ID" value="KKO18177"/>
        <property type="gene ID" value="BROFUL_03126"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.170.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00373">
        <property type="entry name" value="Ribosomal_L28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034704">
        <property type="entry name" value="L28p-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026569">
        <property type="entry name" value="Ribo_L28/L24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037147">
        <property type="entry name" value="Ribo_L28/L24_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001383">
        <property type="entry name" value="Ribosomal_L28"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00830">
        <property type="entry name" value="Ribosomal_L28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143800">
        <property type="entry name" value="SSF143800"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00009">
        <property type="entry name" value="L28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008760"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00373"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18177.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="76" mass="8431" checksum="B1524F6E4106C42D" modified="2015-11-11" version="1">MSQVCVMCGKKTRVGNQIERRGLAKWKGGVGKKITGKTKRKFKINLQRVRANVEGTVKRIKVCTRCISAGKVTKAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQR9</accession>
    <name>A0A0M2UQR9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Putative bc1 protein (Putative UQ:cyt c oxidoreductase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="primary">qcrC</name>
        <name evidence="12" type="ORF">BROFUL_02872</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000270">
        <property type="protein sequence ID" value="KKO18438.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18438">
        <property type="protein sequence ID" value="KKO18438"/>
        <property type="gene ID" value="BROFUL_02872"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.810.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005798">
        <property type="entry name" value="Cyt_b/b6_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036150">
        <property type="entry name" value="Cyt_b/b6_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027387">
        <property type="entry name" value="Cytb/b6-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00032">
        <property type="entry name" value="Cytochrom_B_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81648">
        <property type="entry name" value="SSF81648"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51003">
        <property type="entry name" value="CYTB_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0249">Electron transport</keyword>
    <keyword evidence="3" id="KW-0349">Heme</keyword>
    <keyword evidence="8" id="KW-0408">Iron</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="21"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="82"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="123"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="170"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="202"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="domain" description="CYTB_CTER" evidence="11">
        <location>
            <begin position="5"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO18438.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="240" mass="27562" checksum="1EFA79D667725A99" modified="2015-11-11" version="1">MEVRQEKKGMVEVKDDKVFTWPTLVAKEFLAAIFVTVGLLFYSYFVDAPLRELSNPGQAENPAKAPWYFLGLQEALVYFDPWYAGVILPSIIIVGLILIPYLDNNPKGNGYYTFKERKFAVTTFVFGYIFWYVLIYIGTALRGPFWAFFWPWEPWTHDFPTPPPMHDLPLPLGVVLLGGFYFAGLVLPALVKKDFFMKLGVIRYSLTMGLLLTMIGTVIKMVFRLAFNVKYIIATPWINI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQY3</accession>
    <name>A0A0M2UQY3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Flagellar hook-basal body complex protein FliE</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3 4" type="primary">fliE</name>
        <name evidence="4" type="ORF">BROFUL_03004</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 3">Bacterial flagellum basal body</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the FliE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18277">
        <property type="protein sequence ID" value="KKO18277"/>
        <property type="gene ID" value="BROFUL_03004"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009425">
        <property type="term" value="C:bacterial-type flagellum basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003774">
        <property type="term" value="F:cytoskeletal motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005198">
        <property type="term" value="F:structural molecule activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00724">
        <property type="entry name" value="FliE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001624">
        <property type="entry name" value="FliE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34653">
        <property type="entry name" value="PTHR34653"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02049">
        <property type="entry name" value="FliE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01006">
        <property type="entry name" value="FLGHOOKFLIE"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00205">
        <property type="entry name" value="fliE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="4" id="KW-0966">Cell projection</keyword>
    <keyword evidence="4" id="KW-0969">Cilium</keyword>
    <keyword evidence="4" id="KW-0282">Flagellum</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="100" mass="11549" checksum="06DD0D44DDC77A21" modified="2015-11-11" version="1">MDIMHIKGKEANPINKEIVNSVQEQEQGESFKKTLSSFLDEVNDLQLKANESIEDLATEKVKNVHEVMIAMAKAEVSFKFMMEARNKLVETYKEVMRMQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQY5</accession>
    <name>A0A0M2UQY5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02822</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000265">
        <property type="protein sequence ID" value="KKO18498.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18498">
        <property type="protein sequence ID" value="KKO18498"/>
        <property type="gene ID" value="BROFUL_02822"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3491"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005643936" evidence="1">
        <location>
            <begin position="33"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18498.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="101" mass="10740" checksum="55CD68336D37CCCD" modified="2015-11-11" version="1">MTQNPSGNKLPIIPCTLLAMAVLLSAAFCAFAENPGNNPDGGVMQTSEEGAWTGIDVSIVGKYASKYGRPPRDPYINTDQGDLLLFVFTLAGVDWGVRHGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR72</accession>
    <name>A0A0M2UR72_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02931</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000276">
        <property type="protein sequence ID" value="KKO18367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18367">
        <property type="protein sequence ID" value="KKO18367"/>
        <property type="gene ID" value="BROFUL_02931"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="169" mass="19404" checksum="76F4E37E972FDF41" modified="2015-11-11" version="1">MYYFDILEGLYRSKVKYLVVGGLSVNLYGVPRVTQDIDIDIVIAMNKENVLKTTSLFKELGYVPRLPANPDDLADYDSVKDWIKNKNLKAFSFYHKKDNYKVVGVVLVHPLDFEESFVNRTVKRAKDVDIYLASVDDIIKMKKMSGRPQDLSDIEMLNKVRKYLGEGNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR85</accession>
    <name>A0A0M2UR85_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02888</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18382.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18382">
        <property type="protein sequence ID" value="KKO18382"/>
        <property type="gene ID" value="BROFUL_02888"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18382.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="29" mass="3386" checksum="C0C3561FD7BB69E7" modified="2015-11-11" version="1">MAENEGFAISETIKRANIRYTTKKTKDIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URC7</accession>
    <name>A0A0M2URC7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glyco_trans_2-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03138</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000287">
        <property type="protein sequence ID" value="KKO18185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18185">
        <property type="protein sequence ID" value="KKO18185"/>
        <property type="gene ID" value="BROFUL_03138"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3870"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="67"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="329" mass="37653" checksum="38202D9FD71D3115" modified="2015-11-11" version="1">MNTLICLNSHYSTTRLVTKEIPNMTKDSMSKVQTQLFLPQNLHRKGEGGLRSEGYFKKSCVGKPLVTIITVALNGVNYIEKTMKSVINQTYDNVEYVVIDGGSTDGTLDIVKKYKDSITYWISEPDDGISDAFNKGISLSAGDIIGILSAGDWYETDTIAQVVSHFSTGKADIVHGMSQYWDSSAKKTHLICANHDLLHREMTVCHLTVFALRKCYTSIGLFRREFRYAMDYEWLLRAKVSGMTFLYINRCLAHSREGGISDRKWRSALWEVAQAKSIHFHGRINHLLYFVYQVIKGTVRRYLDHIGLQFITRFYHTRYSLTKKTRSID</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URJ2</accession>
    <name>A0A0M2URJ2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Glucose-1-phosphate adenylyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_02634</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="6">Glycan biosynthesis; glycogen biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18683">
        <property type="protein sequence ID" value="KKO18683"/>
        <property type="gene ID" value="BROFUL_02634"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3269"/>
    <dbReference type="UniPathway" id="UPA00164"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008878">
        <property type="term" value="F:glucose-1-phosphate adenylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005978">
        <property type="term" value="P:glycogen biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011831">
        <property type="entry name" value="ADP-Glc_PPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005836">
        <property type="entry name" value="ADP_Glu_pyroP_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005835">
        <property type="entry name" value="NTP_transferase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43523">
        <property type="entry name" value="PTHR43523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00483">
        <property type="entry name" value="NTP_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02091">
        <property type="entry name" value="glgC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00808">
        <property type="entry name" value="ADP_GLC_PYROPHOSPH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00809">
        <property type="entry name" value="ADP_GLC_PYROPHOSPH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00810">
        <property type="entry name" value="ADP_GLC_PYROPHOSPH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="6" id="KW-0320">Glycogen biosynthesis</keyword>
    <keyword evidence="2" id="KW-0321">Glycogen metabolism</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NTP_transferase" evidence="7">
        <location>
            <begin position="6"/>
            <end position="273"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010443"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022600"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="426" mass="47936" checksum="2C9E5BA956BF05F1" modified="2015-11-11" version="1">MDNVISVILGGGRGTRLYPLTKERSKPAVPLAGKYRLIDIPISNCLNSELNKIYVLTQFNSASLHRHITRAYKFDNFSRGFIEILAATQTIESMNWYQGTADAVRQNLRFFNQPNIDFVLILSGDQLYRMDYEHIIKEHIQNGAEVTISTIPVERKESPNLGILKIDEQGRITGFFEKPKDETIIDSLSLGAGVFERRGVSARGRSLLASMGIYVFNLEVLTEILKETSKSDFGKDIIPEIIKTRRVFAYFFDGYWEDIGTIKSFYEANLNLASLTPSFNLYSEKVPIYTNPLFLPGSIINGCKITQSIISDGCRVDQAEISNSVIGIRSILGKNTLIQNSIIMGADYYETEANIRTNRFKKIPDTGIGNQCRIVGAIIDKNVHIGEQVTIENKQKIEYLDAENYMIRDSIVIIPKGSIVPSYTTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URN2</accession>
    <name>A0A0M2URN2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Deoxyribonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_03027</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18300.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18300">
        <property type="protein sequence ID" value="KKO18300"/>
        <property type="gene ID" value="BROFUL_03027"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3736"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004536">
        <property type="term" value="F:deoxyribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01310">
        <property type="entry name" value="TatD_DNAse"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018228">
        <property type="entry name" value="DNase_TatD-rel_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015991">
        <property type="entry name" value="Hydrolase_TatD-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023821">
        <property type="entry name" value="rSAM_TatD-assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001130">
        <property type="entry name" value="TatD-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01026">
        <property type="entry name" value="TatD_DNase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01111">
        <property type="entry name" value="Uncharacterised_Radical_SAM_Su"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04038">
        <property type="entry name" value="tatD_link_rSAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00010">
        <property type="entry name" value="TIGR00010"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01137">
        <property type="entry name" value="TATD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01090">
        <property type="entry name" value="TATD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01091">
        <property type="entry name" value="TATD_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="5">
        <location>
            <begin position="265"/>
            <end position="456"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18300.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="456" mass="50692" checksum="61D5133E06978285" modified="2015-11-11" version="1">MIIDTHAHLDFPDYKADLESVLSRAKEADIGCIINVGTSLASSKKSVTLANRFPPVYASIGIHPHDASKVSDQDWQALESLVNEPKVIAVGETGLDYYRNRSPHDDQQRIFHKHLILAKRHNLPVIIHCRDASDDCLKILDEHKNGLLKGVVHCFSGTAEVVKKYLELGLYVSFAGPITFSNANSLREVAKSVPVERLLLETDCPFLSPQQKRGERNEPAYLSFIIPVLASIYGLSVSDIQRITTFNAHILFGIGETEYEGKIAYAIRNSLYVNLTNRCSNMCAFCMRETYPIVKGHHLGLKKEPTTEEVINAIGDPGSYNEIVFCGYGEPTERLDVLIAVAQFLKSKGKRIRLDTNGHGDLINGRSIIQELKGLIDTICISLNAETAEKYEEICKPVFGKRAYPALIQFIKDAKQTIPNVQVSIVDVPGVNVEKCEGIARELGVDFRVRNYNVLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URR4</accession>
    <name>A0A0M2URR4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02543</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18763">
        <property type="protein sequence ID" value="KKO18763"/>
        <property type="gene ID" value="BROFUL_02543"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="74" mass="8061" checksum="D6A63CD35F6DEE9D" modified="2015-11-11" version="1">MCDVGGHVSSDMITWQCACCGTAIRDSNDPVEGLCDLGICLSCRNAPEDWLAFVSEEWEEGICSDCLSPCDLKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URV1</accession>
    <name>A0A0M2URV1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Anaerobic ribonucleoside-triphosphate reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02934</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000276">
        <property type="protein sequence ID" value="KKO18370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18370">
        <property type="protein sequence ID" value="KKO18370"/>
        <property type="gene ID" value="BROFUL_02934"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3631"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008998">
        <property type="term" value="F:ribonucleoside-triphosphate reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005144">
        <property type="entry name" value="ATP-cone_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012833">
        <property type="entry name" value="NrdD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03477">
        <property type="entry name" value="ATP-cone"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13597">
        <property type="entry name" value="NRDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02487">
        <property type="entry name" value="NrdD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51161">
        <property type="entry name" value="ATP_CONE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-cone" evidence="4">
        <location>
            <begin position="8"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="815" mass="91666" checksum="D3497AFD494A943F" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US79</accession>
    <name>A0A0M2US79_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Chemotaxis protein CheY</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">cheY_2</name>
        <name evidence="3" type="ORF">BROFUL_02576</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000239">
        <property type="protein sequence ID" value="KKO18697.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18697">
        <property type="protein sequence ID" value="KKO18697"/>
        <property type="gene ID" value="BROFUL_02576"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="3"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18697.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="130" mass="14600" checksum="EDA97C18E9B1D431" modified="2015-11-11" version="1">MKKILVVDDSKVIRMVIKRLLTQHGYQIAGEAENGRAAFEKYKDLRPDAVTMDIIMPEVDGIQGLKDILSFDKQAKVIMISAIDQKESLLEAIRQGAADYVVKPFEDDRMVAAMKNIFDENQKDAGGSRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US92</accession>
    <name>A0A0M2US92_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Iron-sulfur cluster carrier protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02780</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the Mrp/NBP35 ATP-binding proteins family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000264">
        <property type="protein sequence ID" value="KKO18510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18510">
        <property type="protein sequence ID" value="KKO18510"/>
        <property type="gene ID" value="BROFUL_02780"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140663">
        <property type="term" value="F:ATP-dependent FeS chaperone activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02040">
        <property type="entry name" value="Mrp_NBP35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019591">
        <property type="entry name" value="Mrp/NBP35_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033756">
        <property type="entry name" value="YlxH/NBP35"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23264">
        <property type="entry name" value="PTHR23264"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10609">
        <property type="entry name" value="ParA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="243" mass="26767" checksum="676973DEE431A86C" modified="2015-11-11" version="1">MKEEVMHECKIPFTCELCEKQLSCQLDQIEHNKWAITQRMKDIKYKIVVMSNKGGVGKSTVTTNLGVALARMGNKVGIADADIHGPNIPIMLGVEGKRLKNSSGGVLPLEVLPNLKVASLSFLIENPSMPVIWRDSAKWDFLCELMGSVCWGNLDYLLVDLPPGTGNEAISIIELIGKVDGSVIVTTPQDVVLLDVRKAVMFSRDSNVPIIGIVENMSGLICLIVTRELMYLKREEGRRFAGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USC9</accession>
    <name>A0A0M2USC9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">CRISPR-associated endonuclease Cas9</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">cas9_2</name>
        <name evidence="1" type="ORF">BROFUL_03439</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000313">
        <property type="protein sequence ID" value="KKO17891.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17891">
        <property type="protein sequence ID" value="KKO17891"/>
        <property type="gene ID" value="BROFUL_03439"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17891.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="170" mass="19907" checksum="B846730127EDBE8A" modified="2015-11-11" version="1">MITDLFTIHNKKALFSRLINEHNHANNIWRFSSKEAYDLATLELEPGYAKHCMKVINKLLPYMRDGMNYHDAKEKYENEYMKKHPVQTNQNTTLPLPPNVANPIVQKALYETRRVVNAILKAYGMPEIIRIELARDLKTSKEHRKKFSSVVKWRPEKSPPMYSCHASKPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USH7</accession>
    <name>A0A0M2USH7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02502</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000234">
        <property type="protein sequence ID" value="KKO18792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18792">
        <property type="protein sequence ID" value="KKO18792"/>
        <property type="gene ID" value="BROFUL_02502"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18792.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="416" mass="48200" checksum="C733D8D77428A286" modified="2015-11-11" version="1">MLSEELSPYNSETRELPIVSGFNIMDTLSMLYHDLHVGPIGISPSYQIKETFDDNVFFSSADEVSDFYTSHLAGIELASPLSDFSRTYLNYNAEIYDYMRLDEQNHINQSVKAAFDFRFANDFNFSVSDQLSKREIPGIVNRRFVGNIEEVPTEDFALETFVAKREFIINLASFDLDLPDFFPNLDSSIHYANRDVSYEEKEFEDSDYNTDIIRTLANYNYPFLPIQISSGFVYTVQRYDLNENNDSIRKNIPFDITWNITPKNAVYLNTEYRISDYNSNSTLEDFKGLTTVLGDRYAINPVSSIEIHGERSIRELRASDNNAYLYLAIGIRYTITHDRFDAFIDVGYSKLKFLEENEAFGITEKIDGVNVDLNVRYSPQEWWFAEFNYNYDFNNDNIDFGDFSRNTLSLAAGLNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USJ1</accession>
    <name>A0A0M2USJ1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03354</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000307">
        <property type="protein sequence ID" value="KKO17956.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17956">
        <property type="protein sequence ID" value="KKO17956"/>
        <property type="gene ID" value="BROFUL_03354"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005643973" evidence="2">
        <location>
            <begin position="33"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="37"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="58"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO17956.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="328" mass="37075" checksum="64A5036C21756DEA" modified="2015-11-11" version="1">MKYVIRRQSFKAHVTMCLFITLISTLPLIGSACTKGASEPLAPSPDSPVPKETPREGAVEPTQSQDTTSVARPAPSKQPKDSIDMSSEVKSIGGITWQGDSLWVLDDERKIIDRFDTTLEELSPDHKYSIDLTQSSAFSLKKFKGLAYDKEAEALWVAAEETDIDPKKMVPMLIKINLVNRQTELIKMEIPAKKGFKSIEGIAWDKKRESLWVAIYAGFSSSLNQINPKTRQITKSIFSDSYPKGIATDGEHLWSICYNGEEFPSAIDQRIIQPEEHKMLRSREFIKDIPEAEPISLVFDGNDLWYADKKTKRVIRFIQPNKKPLQLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USN1</accession>
    <name>A0A0M2USN1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02690</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000248">
        <property type="protein sequence ID" value="KKO18605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18605">
        <property type="protein sequence ID" value="KKO18605"/>
        <property type="gene ID" value="BROFUL_02690"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="21" mass="2531" checksum="E61226624FAD0F06" modified="2015-11-11" version="1" fragment="single">MSERLLRFTRNDNVQCAIKVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USU2</accession>
    <name>A0A0M2USU2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">EcoKI restriction-modification system protein HsdS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_02156</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the type-I restriction system S methylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000214">
        <property type="protein sequence ID" value="KKO19113.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19113">
        <property type="protein sequence ID" value="KKO19113"/>
        <property type="gene ID" value="BROFUL_02156"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2692"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.220.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000055">
        <property type="entry name" value="Restrct_endonuc_typeI_TRD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044946">
        <property type="entry name" value="Restrct_endonuc_typeI_TRD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01420">
        <property type="entry name" value="Methylase_S"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0680">Restriction system</keyword>
    <feature type="domain" description="Methylase_S" evidence="5">
        <location>
            <begin position="29"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="domain" description="Methylase_S" evidence="5">
        <location>
            <begin position="228"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="386"/>
            <end position="413"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010923"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01420"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19113.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="422" mass="47331" checksum="D5A081E29B5005A2" modified="2015-11-11" version="1">MSNGKLKMDNCQLPTVNSKFKRTEVGGIPNDWEVKRIDECSKICVGRDLIEAHYSPIQDHKYRYPIYSNTVDNRGLYGYYDIEEYKGESLTVVGRGVGLGTAFKRDGGYGAIGRLLILFPLEKYDASFLTEYINHRVKIFEESSGIPQLTSVSLSKYKIPLPPTKAEQTTIAAALSDADALITQLEKLIAKKRNIKRGAMHELLTGQKRLPGFEIKKGYKQTEIGVVPNDWEIKKLGEVVEKFVNGGTPSTQNENYWAGHIPWITGADILNQRVSEIRRYITKEALKNSATNVIEKGTLLLVSRTGVGKLAIAPFDIAISQDFTGVYVNNKVLQTEYLYRYFDFKSSMLQSQNQGTSIKGITRDTLASIKIPLPTKAEQAAIAQVLSDMDAEIEALEKKLEKYKMIKQGMMQNLLTGKIRLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USY2</accession>
    <name>A0A0M2USY2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Macrocin-O-methyltransferase (TylF)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02141</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19158">
        <property type="protein sequence ID" value="KKO19158"/>
        <property type="gene ID" value="BROFUL_02141"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2670"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008884">
        <property type="entry name" value="TylF_MeTrfase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40036">
        <property type="entry name" value="PTHR40036"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05711">
        <property type="entry name" value="TylF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="218" mass="24666" checksum="2684D15E12D52114" modified="2015-11-11" version="1">MEKLQNFTKYVPTQDLRKFLCRYELFRKILHVHGSIVECGVLYGGGLMAWAQLSEIFEPLNHLRNIIGFDTFSGFVSLSEMDKTGTAFQGKNGGLAIDAYDDLLKSIALYNKNRFLAHIEKVKLVKGDVAVSLPAYLKTNPHLVVSLLYLDFDIYEPTVVALRHLIPRIPKGGIIAFDELNHEVWPGETIAVMQEMGLNKLRIERFPFGSTMSYAVIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTB8</accession>
    <name>A0A0M2UTB8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02453</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000232">
        <property type="protein sequence ID" value="KKO18860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18860">
        <property type="protein sequence ID" value="KKO18860"/>
        <property type="gene ID" value="BROFUL_02453"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="SSF49899"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="689"/>
            <end position="758"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="692"/>
            <end position="716"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="742"/>
            <end position="756"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="934" mass="100406" checksum="7C58C9D4FDC2706B" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTN1</accession>
    <name>A0A0M2UTN1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ATP-dependent RNA helicase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">deaD</name>
        <name evidence="10" type="ORF">BROFUL_02363</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="6">Belongs to the DEAD box helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18970.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18970">
        <property type="protein sequence ID" value="KKO18970"/>
        <property type="gene ID" value="BROFUL_02363"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2936"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003724">
        <property type="term" value="F:RNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005580">
        <property type="entry name" value="DbpA/CsdA_RNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000629">
        <property type="entry name" value="RNA-helicase_DEAD-box_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014014">
        <property type="entry name" value="RNA_helicase_DEAD_Q_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03880">
        <property type="entry name" value="DbpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00039">
        <property type="entry name" value="DEAD_ATP_HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51195">
        <property type="entry name" value="Q_MOTIF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 6 10" id="KW-0347">Helicase</keyword>
    <keyword evidence="2 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Q_MOTIF" evidence="9">
        <location>
            <begin position="2"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase ATP-binding" evidence="7">
        <location>
            <begin position="34"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="8">
        <location>
            <begin position="231"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Q motif" evidence="5">
        <location>
            <begin position="2"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO18970.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="521" mass="59376" checksum="5CD8C5D273A7258F" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTS1</accession>
    <name>A0A0M2UTS1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Probable molybdenum cofactor guanylyltransferase</fullName>
            <shortName evidence="4">MoCo guanylyltransferase</shortName>
            <ecNumber evidence="4">2.7.7.77</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">GTP:molybdopterin guanylyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Mo-MPT guanylyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Molybdopterin guanylyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Molybdopterin-guanine dinucleotide synthase</fullName>
            <shortName evidence="4">MGD synthase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">mobA</name>
        <name evidence="6" type="ORF">BROFUL_03450</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>GTP + H(+) + Mo-molybdopterin = diphosphate + Mo-molybdopterin guanine dinucleotide</text>
            <dbReference type="Rhea" id="RHEA:34243"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:71302"/>
            <dbReference type="ChEBI" id="CHEBI:71310"/>
            <dbReference type="EC" id="2.7.7.77"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="4">The N-terminal domain determines nucleotide recognition and specific binding, while the C-terminal domain determines the specific binding to the target protein.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the MobA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.77" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000315">
        <property type="protein sequence ID" value="KKO17874.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17874">
        <property type="protein sequence ID" value="KKO17874"/>
        <property type="gene ID" value="BROFUL_03450"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4238"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061603">
        <property type="term" value="F:molybdenum cofactor guanylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02503">
        <property type="entry name" value="MobA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00316">
        <property type="entry name" value="MobA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025877">
        <property type="entry name" value="MobA-like_NTP_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013482">
        <property type="entry name" value="Molybde_CF_guanTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12804">
        <property type="entry name" value="NTP_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 4" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 4" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="1 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NTP_transf_3" evidence="5">
        <location>
            <begin position="3"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="6"/>
            <end position="8"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="18"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="63"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF12804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO17874.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="191" mass="21559" checksum="25F2A3C8994E7F04" modified="2015-11-11" version="1">MTAIILAGGKSRRMGFNKALLSYDKKTFIEHQIARLKTIFDEIIISANDAAVYAHLNLPIVSDIMPEKGPLSGICAGLIRSSSHHAFVVACDMPFVQEKAILCLREHIGDYDVVVPQTSRGLEPLHAFYSRNCIQPIRQCLDEGKLRIIDFFPMVKARIIHEQEWKELDGSTLSVTNLNTPEEYQKYFGHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTV0</accession>
    <name>A0A0M2UTV0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 8">4-diphosphocytidyl-2-C-methyl-D-erythritol kinase</fullName>
            <shortName evidence="8">CMK</shortName>
            <ecNumber evidence="2 8">2.7.1.148</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7 8">4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">ispE</name>
        <name evidence="11" type="ORF">BROFUL_03415</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>4-CDP-2-C-methyl-D-erythritol + ATP = 4-CDP-2-C-methyl-D-erythritol 2-phosphate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:18437"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57823"/>
            <dbReference type="ChEBI" id="CHEBI:57919"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.148"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="8">Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 3/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 8">Belongs to the GHMP kinase family. IspE subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.148" evidence="2 8"/>
    <dbReference type="EMBL" id="LAQJ01000312">
        <property type="protein sequence ID" value="KKO17904.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17904">
        <property type="protein sequence ID" value="KKO17904"/>
        <property type="gene ID" value="BROFUL_03415"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4196"/>
    <dbReference type="UniPathway" id="UPA00056">
        <property type="reaction ID" value="UER00094"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050515">
        <property type="term" value="F:4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019288">
        <property type="term" value="P:isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.890">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00061">
        <property type="entry name" value="IspE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013750">
        <property type="entry name" value="GHMP_kinase_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036554">
        <property type="entry name" value="GHMP_kinase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006204">
        <property type="entry name" value="GHMP_kinase_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004424">
        <property type="entry name" value="IspE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08544">
        <property type="entry name" value="GHMP_kinases_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00288">
        <property type="entry name" value="GHMP_kinases_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF010376">
        <property type="entry name" value="IspE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55060">
        <property type="entry name" value="SSF55060"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00154">
        <property type="entry name" value="ispE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="5 8 11" id="KW-0418">Kinase</keyword>
    <keyword evidence="4 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GHMP_kinases_N" evidence="9">
        <location>
            <begin position="92"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="domain" description="GHMP_kinases_C" evidence="10">
        <location>
            <begin position="207"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="17"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="142"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="100"/>
            <end position="110"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009684"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00017473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00032554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF08544"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO17904.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="296" mass="32894" checksum="43F03889FACDC379" modified="2015-11-11" version="1">MQYWEERGKIKIAAPAKINLFLEILGKRPDGYHEIETVMQGISLYDYIHMENRGKDVEFTCSSPKLTAGEDNLVVKAVRLFQKESGISQGVKIHLDKRIPVGAGLGGGSSDAVATLFGLNKLWQVGYDDAKLSSLAEILGSDTPFFVFGNTAVCRGRGEVVTPWKLKTPYTYIVVYPGFEVSTATVYKNFRIVLTKNLKDVTVFLQSLGSGNPEKLGAYLHNRLEEVVFRLYPELEKIKKTLAKFDFCGILLSGSGSALYGLCREERDSKKIEQQIKMLGIGDVFVVTSDFNDNAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTX4</accession>
    <name>A0A0M2UTX4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NAD_binding_4 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01773</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000185">
        <property type="protein sequence ID" value="KKO19513.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19513">
        <property type="protein sequence ID" value="KKO19513"/>
        <property type="gene ID" value="BROFUL_01773"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013120">
        <property type="entry name" value="Far_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07993">
        <property type="entry name" value="NAD_binding_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD_binding_4" evidence="1">
        <location>
            <begin position="18"/>
            <end position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07993"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19513.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="411" mass="46911" checksum="BD59AF889D546AE0" modified="2015-11-11" version="1">MKLKRNLRKNNNQKIILVTGATGFLGGCITRKLFEAGFHLKLLVRDSHQVKARERISEIIPSLRGAKPFSDRVELVDGDISHKYFGLNAKDYVRLSDMVDEVFHCAAATKFSYESDNMLVQTNVYGAEHVAWFCLSGKRKRLHHMSTAYVAGARRDTVFEHELEQNQIFNNNYEKSKFEAERLLQQFIARYRLPVTIYRPSIIVGDSMTGVTRNYDNIYVFGKGLHHLKNYEMRKNSRDTPGNNKKSAGYLSSLRIPGDKHATINLVPVDYVTQAIAAISGQEQSIHKTFQIVNPSPPTLGELAEWMSVATGIHRVRIVPRHEFQTQPETAEEAMYLKGTETFQPYMFGEPQFDSTNTRSMLSGTTIECPFITQESINRFIQYALSTNWGKKLPVTEKEWSPRHVESIKAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTY2</accession>
    <name>A0A0M2UTY2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02246</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19065">
        <property type="protein sequence ID" value="KKO19065"/>
        <property type="gene ID" value="BROFUL_02246"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="87" mass="10610" checksum="1E44629017E6E9CA" modified="2015-11-11" version="1">MVLDLIQYIFKHRNAKDTFDGIIQWWISSEPRFKWKKEEVQATIDFLVSKGWLKIRYIQSPPQRIYAVNKERIEEMEAFLEKYEGLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU07</accession>
    <name>A0A0M2UU07_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 6 7">Protein RecA</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6 7">Recombinase A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">recA</name>
        <name evidence="12" type="ORF">BROFUL_01962</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 8">Belongs to the RecA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19302">
        <property type="protein sequence ID" value="KKO19302"/>
        <property type="gene ID" value="BROFUL_01962"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2443"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140664">
        <property type="term" value="F:ATP-dependent DNA damage sensor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00983">
        <property type="entry name" value="recA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00268">
        <property type="entry name" value="RecA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013765">
        <property type="entry name" value="DNA_recomb/repair_RecA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020584">
        <property type="entry name" value="DNA_recomb/repair_RecA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020588">
        <property type="entry name" value="RecA_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023400">
        <property type="entry name" value="RecA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020587">
        <property type="entry name" value="RecA_monomer-monomer_interface"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45900">
        <property type="entry name" value="PTHR45900"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00154">
        <property type="entry name" value="RecA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00142">
        <property type="entry name" value="RECA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54752">
        <property type="entry name" value="SSF54752"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02012">
        <property type="entry name" value="tigrfam_recA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00321">
        <property type="entry name" value="RECA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50162">
        <property type="entry name" value="RECA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50163">
        <property type="entry name" value="RECA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6 8" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="6 7" id="KW-0234">DNA repair</keyword>
    <keyword evidence="5 6 8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3 6 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7" id="KW-0742">SOS response</keyword>
    <feature type="domain" description="RECA_2" evidence="10">
        <location>
            <begin position="43"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="domain" description="RECA_3" evidence="11">
        <location>
            <begin position="207"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="336"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="339"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="73"/>
            <end position="80"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00015553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000526"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO19302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="363" mass="39547" checksum="36FB7429EE828B1E" modified="2015-11-11" version="1">MISKPEDAEKEKRQQALERAISQIEKQYGKGTIMKLGGQTRVDVPTISTGALSLDIALGVGGIPRGRVIEIFGPESSGKTTLTLHIIANAQKEGGMAAFIDAEHALDPDYARKLGVDLNNLMVNQPDTGEQALEIAELLVRSNAVDIIAIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGCIAKSHTSVIFINQIREKIGVMYGGNPETTPGGRALKFYASVRIDIRRIGGIKDGEVTIGNRVRATIAKNKVAAPFKKAEFDILYNTGISRAGDIIDLGVERQIIEKSGTWFSYGELRLGQGRENSRQFIDGKPELMKEIEQAILQKIKPEMVSEKPPEKPPEKMKIEPASKKGEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU16</accession>
    <name>A0A0M2UU16_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01972</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19312.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19312">
        <property type="protein sequence ID" value="KKO19312"/>
        <property type="gene ID" value="BROFUL_01972"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008171">
        <property type="term" value="F:O-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031725">
        <property type="entry name" value="ASMT_dimerisation"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016461">
        <property type="entry name" value="COMT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001077">
        <property type="entry name" value="O_MeTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11746">
        <property type="entry name" value="PTHR11746"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16864">
        <property type="entry name" value="Dimerisation2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00891">
        <property type="entry name" value="Methyltransf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005739">
        <property type="entry name" value="O-mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51683">
        <property type="entry name" value="SAM_OMT_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Dimerisation2" evidence="5">
        <location>
            <begin position="19"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="domain" description="Methyltransf_2" evidence="4">
        <location>
            <begin position="140"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2 3">
        <location>
            <position position="249"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="201"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR005739-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00891"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF16864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19312.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="341" mass="38482" checksum="A731D3CA2694265F" modified="2015-11-11" version="1">MKGEDTTMADTNHLNADYLLQLSCGYWKSHVLFTAVGFDLFTILNRGRRTAKEISQTIQANERATEMLLNALVSLDLLTKQENYYANSVLSNRHLIKGNPYYLGDSIHHFHNMMDTWAMLRETIETGNPVSLKDLPEEVDPHDVRDFITAMHNLASVKTEEICSKIDLKEAKLLLDIAGGPGTYAIALARANPGLHAVVFDLEHTIRLTREFIAAAKIEDRVTTQAGNCLEDSFGEKVYDAILVSNLLHIYNPANNTRILRKCRDALRERGLIVIHEFVLDTTKTHPQFAALFSLNMLLGTQEGESYSEDEYRVWLANAGFEDIKRIDLESNSTLILGKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU24</accession>
    <name>A0A0M2UU24_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Obg GTP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">obg</name>
        <name evidence="1" type="ORF">BROFUL_01982</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19322">
        <property type="protein sequence ID" value="KKO19322"/>
        <property type="gene ID" value="BROFUL_01982"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="77" mass="8257" checksum="0F0588107D26399A" modified="2015-11-11" version="1">MQYNPVLAEKAEIVIANKMDLLDAETGAKCIQVLEEKLSKPVCPVSMVTGSNLDRLIGLIVNTLHGLPSSLHEPVCG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU66</accession>
    <name>A0A0M2UU66_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">30S ribosomal protein S13</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpsM</name>
        <name evidence="8" type="ORF">BROFUL_01899</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the universal ribosomal protein uS13 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19372.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19372">
        <property type="protein sequence ID" value="KKO19372"/>
        <property type="gene ID" value="BROFUL_01899"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2368"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.910.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01315">
        <property type="entry name" value="Ribosomal_S13_S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027437">
        <property type="entry name" value="30s_Rbsml_prot_S13_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001892">
        <property type="entry name" value="Ribosomal_S13"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010979">
        <property type="entry name" value="Ribosomal_S13-like_H2TH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019980">
        <property type="entry name" value="Ribosomal_S13_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018269">
        <property type="entry name" value="Ribosomal_S13_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10871:SF1">
        <property type="entry name" value="PTHR10871:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00416">
        <property type="entry name" value="Ribosomal_S13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002134">
        <property type="entry name" value="Ribosomal_S13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46946">
        <property type="entry name" value="SSF46946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03631">
        <property type="entry name" value="uS13_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00646">
        <property type="entry name" value="RIBOSOMAL_S13_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50159">
        <property type="entry name" value="RIBOSOMAL_S13_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="5" id="KW-0820">tRNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="102"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="7">
        <location>
            <begin position="104"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00029533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003830"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19372.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="127" mass="14368" checksum="B8118295197EC739" modified="2015-11-11" version="1">MPRIAGIDIPAEKRVVVALTYAYGIGKALSQRILKDLQIDENVRAKNLHDDQLSMLNAYIEKNFTVEGQLRRQEMQNVARLKSINCYRGIRHKVGLPVRGQRTKTNARTRKGRKKTVAGKKGVKELG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUF0</accession>
    <name>A0A0M2UUF0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02035</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19235">
        <property type="protein sequence ID" value="KKO19235"/>
        <property type="gene ID" value="BROFUL_02035"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="26"/>
            <end position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="77" mass="8764" checksum="7A0D10AC1BEA77E0" modified="2015-11-11" version="1">MTGLNDQVGIYINCCLDQFLQEPLGSLPFVYIADIFLAGHVHYGFKRLKIFRYDKEFASDNLSFGWTQASPLAIKNC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUK7</accession>
    <name>A0A0M2UUK7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4">Phosphate acyltransferase</fullName>
            <ecNumber evidence="3 4">2.3.1.274</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Acyl-ACP phosphotransacylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Acyl-[acyl-carrier-protein]--phosphate acyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Phosphate-acyl-ACP acyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">plsX</name>
        <name evidence="5" type="ORF">BROFUL_01965</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 4">
            <text>a fatty acyl-[ACP] + phosphate = an acyl phosphate + holo-[ACP]</text>
            <dbReference type="Rhea" id="RHEA:42292"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="Rhea" id="RHEA-COMP:14125"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:59918"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="ChEBI" id="CHEBI:138651"/>
            <dbReference type="EC" id="2.3.1.274"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4">Lipid metabolism; phospholipid metabolism.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer. Probably interacts with PlsY.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="4">Associated with the membrane possibly through PlsY.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the PlsX family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.274" evidence="3 4"/>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19305.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19305">
        <property type="protein sequence ID" value="KKO19305"/>
        <property type="gene ID" value="BROFUL_01965"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2448"/>
    <dbReference type="UniPathway" id="UPA00085"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043811">
        <property type="term" value="F:phosphate:acyl-[acyl carrier protein] acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00019">
        <property type="entry name" value="PlsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003664">
        <property type="entry name" value="FA_synthesis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012281">
        <property type="entry name" value="Phospholipid_synth_PlsX-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30100">
        <property type="entry name" value="PTHR30100"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02504">
        <property type="entry name" value="FA_synthesis"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002465">
        <property type="entry name" value="Phsphlp_syn_PlsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00182">
        <property type="entry name" value="plsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="2 4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="4" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="4" id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword evidence="4" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00024069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19305.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="338" mass="36002" checksum="CBAA7973E838087A" modified="2015-11-11" version="1">MRVAVDAMGGDKAPHEIVKGAVLAAQQFQDSEILLVGDEKVIQQELESCQAIPKNITTHHASQVVSMDDPATYSIRQKTNSSITRSVELVAKGEATAVVSAGHTGAAVAAATLHLRTLKGVRRPGIAAPFPTRSGNCLIIDVGANIACKPIHLFQYGVMSTIFSKYISRVQYPRVGLLNIGEEDAKGNDLAKETFALFSNSQLTFVGNVEGREIFDGKADIVVCEGFVGNVMLKFAEGLATGLLSTIKAEAMKGFWSKLGLFLCKPAFAPLKAKMDFTEYGGAPLLGVNGVCIICHGRSDSKAIYNAIKVALQLSKNKVNDHIVAELEKANVPAASVM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUP9</accession>
    <name>A0A0M2UUP9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Alkyl hydroperoxide reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">ccsX_2</name>
        <name evidence="5" type="ORF">BROFUL_02597</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000239">
        <property type="protein sequence ID" value="KKO18716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18716">
        <property type="protein sequence ID" value="KKO18716"/>
        <property type="gene ID" value="BROFUL_02597"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3223"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000866">
        <property type="entry name" value="AhpC/TSA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024706">
        <property type="entry name" value="Peroxiredoxin_AhpC-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00578">
        <property type="entry name" value="AhpC-TSA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000239">
        <property type="entry name" value="AHPC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="1" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="4">
        <location>
            <begin position="3"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="active site" description="Cysteine sulfenic acid (-SOH) intermediate" evidence="3">
        <location>
            <position position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000239-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="173" mass="19584" checksum="F0DE78941975F89C" modified="2015-11-11" version="1">MSVRVGQNAPEFTLQGLVDEQIKEVSLDDFKGKWVVLFFYPLDFTFICPTEITEFSKRDSEFKALSAQVLGISVDSVFSHKAWLKELGKINFPWLSDMTKEVSRKYCVLIEDRGIALRGTFIIDPEGKVKYQLVHDLGVGRSVEEVLRVLKALQTGELCPVEWKPGKKTLGKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUR2</accession>
    <name>A0A0M2UUR2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01932</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000197">
        <property type="protein sequence ID" value="KKO19360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19360">
        <property type="protein sequence ID" value="KKO19360"/>
        <property type="gene ID" value="BROFUL_01932"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2403"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032317">
        <property type="entry name" value="HlyD_D23"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045800">
        <property type="entry name" value="HMBD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16576">
        <property type="entry name" value="HlyD_D23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19335">
        <property type="entry name" value="HMBD"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HMBD" evidence="2">
        <location>
            <begin position="90"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="domain" description="HlyD_D23" evidence="1">
        <location>
            <begin position="155"/>
            <end position="377"/>
        </location>
    </feature>
    <feature type="domain" description="HMBD" evidence="2">
        <location>
            <begin position="451"/>
            <end position="475"/>
        </location>
    </feature>
    <feature type="domain" description="HMBD" evidence="2">
        <location>
            <begin position="486"/>
            <end position="511"/>
        </location>
    </feature>
    <feature type="domain" description="HMBD" evidence="2">
        <location>
            <begin position="610"/>
            <end position="636"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF16576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF19335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19360.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="725" mass="81188" checksum="B587BA0CBAB6A5AA" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUT5</accession>
    <name>A0A0M2UUT5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Rubredoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_01489</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="6 7">
            <name>Fe(3+)</name>
            <dbReference type="ChEBI" id="CHEBI:29034"/>
        </cofactor>
        <text evidence="6 7">Binds 1 Fe(3+) ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the rubredoxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000152">
        <property type="protein sequence ID" value="KKO19803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19803">
        <property type="protein sequence ID" value="KKO19803"/>
        <property type="gene ID" value="BROFUL_01489"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1843"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00730">
        <property type="entry name" value="rubredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024922">
        <property type="entry name" value="Rubredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024934">
        <property type="entry name" value="Rubredoxin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024935">
        <property type="entry name" value="Rubredoxin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018527">
        <property type="entry name" value="Rubredoxin_Fe_BS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00301">
        <property type="entry name" value="Rubredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000071">
        <property type="entry name" value="Rubredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00163">
        <property type="entry name" value="RUBREDOXIN"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00202">
        <property type="entry name" value="RUBREDOXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50903">
        <property type="entry name" value="RUBREDOXIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0249">Electron transport</keyword>
    <keyword evidence="5 6 7" id="KW-0408">Iron</keyword>
    <keyword evidence="3 6 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Rubredoxin-like" evidence="8">
        <location>
            <begin position="2"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="5"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="8"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="38"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="41"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR000071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000071-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="53" mass="5916" checksum="FFFD932F7A12ED30" modified="2015-11-11" version="1">MKWECRVCGYVYDPEKGDPDNGVKPGTSFEQLPDDWTCPACGASKDLFDKLDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUT8</accession>
    <name>A0A0M2UUT8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 2">50S ribosomal protein L24</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">rplX</name>
        <name evidence="3" type="ORF">BROFUL_01912</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.</text>
    </comment>
    <comment type="function">
        <text evidence="2">One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the universal ribosomal protein uL24 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19385.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19385">
        <property type="protein sequence ID" value="KKO19385"/>
        <property type="gene ID" value="BROFUL_01912"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06089">
        <property type="entry name" value="KOW_RPL26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01326_B">
        <property type="entry name" value="Ribosomal_L24_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041988">
        <property type="entry name" value="KOW_RPL26/RPL24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014722">
        <property type="entry name" value="Rib_L2_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003256">
        <property type="entry name" value="Ribosomal_L24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005825">
        <property type="entry name" value="Ribosomal_L24/26_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12903">
        <property type="entry name" value="PTHR12903"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17136">
        <property type="entry name" value="ribosomal_L24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="SSF50104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01079">
        <property type="entry name" value="rplX_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01108">
        <property type="entry name" value="RIBOSOMAL_L24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 3" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="2" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00029550"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19385.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="111" mass="12193" checksum="C029B5A0136585AA" modified="2015-11-11" version="1">MHVRMNDLVAVMAGNEAGKTGKVIRVLTDKKRVMIKGVNLVYKHSKPSQKNPQGGRIEKEASIAIANVLPVCQNKSCKKGNKGVRTRKKILENGAKLRVCAYCDSEIMATE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUU4</accession>
    <name>A0A0M2UUU4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02541</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18761">
        <property type="protein sequence ID" value="KKO18761"/>
        <property type="gene ID" value="BROFUL_02541"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644035" evidence="2">
        <location>
            <begin position="22"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="132"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="182"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="132"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="205"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="232"/>
            <end position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="366" mass="40759" checksum="615DA9C09046C2C9" modified="2015-11-11" version="1">MVKYAALVLCLVVICFSPAYGDTIVLKNSSADIDLKITSVRKDCVNAILTRHSIKSLNMEFFSSKEYPDVIVLNITNTAMECKIKEIAEDYVRLQIPASVISSLAVSSPLEGDMKNTVSDKMVNRLRMGDVEGRGAAKEPEEGRVFEPMADGNAREGGIRDGLRTSSSEGVAVAKNYRLRVKKAERKSPSVEGELSKPETESSGLEEALTDEETLEPDAETSEMNQQAAHEPMEPLEEEEKEGVEDVVKKDKPVDHDPNLGRVEGRILHSGKPLPDCQVKLQMLEKVGILNKGYRPIEGALEHEVITDKDGVYRFMNMSPGLYKVYWKPSSETSWIRRFKMEPDVVVNSGRLTTPKDIETLKRTLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUV4</accession>
    <name>A0A0M2UUV4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02996</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18269.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18269">
        <property type="protein sequence ID" value="KKO18269"/>
        <property type="gene ID" value="BROFUL_02996"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13174">
        <property type="entry name" value="TPR_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="53"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="108"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="108"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18269.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="290" mass="33127" checksum="C5E7CBBE81DA32C7" modified="2015-11-11" version="1">MSDSLQQDESHVAMEIHQPSTEVLADTNKKSENEKIAIPFFVVSRIALVFRRYGISIALNIFIIGIVCFLFLMQKYWMNYGNKDIGSIVEEKVIETMKKNISLDNTRINASNENEQAGRSLGNNKGEDASASMNSLDDMHIDRSKYIIEANRFYEQGCYENAAVFYEAGLNNSMPFLNEDFIMYRLGDCYLLSKRYEDALKVFHALTSDYINSTYQFKSRLKIGECYAKIGEFKKARKSLYTILALEGKCSSADDKLTVADSYFKIADYYMEEAKRFLNINTVGTSSTNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUV9</accession>
    <name>A0A0M2UUV9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Sigma 54 response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">atoC_2</name>
        <name evidence="8" type="ORF">BROFUL_03001</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18274.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18274">
        <property type="protein sequence ID" value="KKO18274"/>
        <property type="gene ID" value="BROFUL_03001"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3708"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025662">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025944">
        <property type="entry name" value="Sigma_54_int_dom_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00158">
        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01590">
        <property type="entry name" value="HTHFIS"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00675">
        <property type="entry name" value="SIGMA54_INTERACT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00688">
        <property type="entry name" value="SIGMA54_INTERACT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="7">
        <location>
            <begin position="5"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="6">
        <location>
            <begin position="144"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="5">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18274.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="464" mass="52905" checksum="BFA4226D1429CDF5" modified="2015-11-11" version="1">MSIEKVLVIDDDLLGREYLAETVTRNGYEVALASDGLQALASFSKNGCDLVFLDMKMPGMCGMEVLERIKTISPETVVVLMTAYGTIETAVEAMKKGAYDYIIKPFSPDQVELVIARVNERQKLIMENRYWRSNANVDEKMNPVFSTNSKMLQIYEQINRIAQSKASVLVQGESGTGKELVARAIHFHSNRYEKPFIRVNCAALTETLLESELFGHERGAYTGAISKHMGRFELANDGTLLLDEISEISPNIQAKLLRVLEEEEFERVGGEKTIKVDVRIVATTNRNLLEEIRKGAFREDLYYRLNVVPIYLPPLRERREDIPLLVNHYLKKYSLENSTIVKSIDTATMDYLCQYNWPGNVRELKNVIQRAVVMNSSDGLQLEQFSDLCIHQDTKRLEDIWTDGKAIEDVERDLIYSTLEKTGGNKTRAAELLKITTRTLRNKLNKYDAADKSLYQRETISCEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV22</accession>
    <name>A0A0M2UV22_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 7">Aminomethyltransferase</fullName>
            <ecNumber evidence="3 7">2.1.2.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6 7">Glycine cleavage system T protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">gcvT</name>
        <name evidence="10" type="ORF">BROFUL_02497</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">The glycine cleavage system catalyzes the degradation of glycine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>(6S)-5,6,7,8-tetrahydrofolate + (R)-N(6)-(S(8)-aminomethyldihydrolipoyl)-L-lysyl-[protein] = (6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + (R)-N(6)-dihydrolipoyl-L-lysyl-[protein] + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:16945"/>
            <dbReference type="Rhea" id="RHEA-COMP:10475"/>
            <dbReference type="Rhea" id="RHEA-COMP:10492"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:83100"/>
            <dbReference type="ChEBI" id="CHEBI:83143"/>
            <dbReference type="EC" id="2.1.2.10"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="7">The glycine cleavage system is composed of four proteins: P, T, L and H.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the GcvT family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.10" evidence="3 7"/>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18836">
        <property type="protein sequence ID" value="KKO18836"/>
        <property type="gene ID" value="BROFUL_02497"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3101"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004047">
        <property type="term" value="F:aminomethyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019464">
        <property type="term" value="P:glycine decarboxylation via glycine cleavage system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00259">
        <property type="entry name" value="GcvT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006223">
        <property type="entry name" value="GCS_T"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022903">
        <property type="entry name" value="GCS_T_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028896">
        <property type="entry name" value="GCST/YgfZ/DmdA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013977">
        <property type="entry name" value="GCV_T_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006222">
        <property type="entry name" value="GCV_T_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029043">
        <property type="entry name" value="GcvT/YgfZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027266">
        <property type="entry name" value="TrmE/GcvT_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43757">
        <property type="entry name" value="PTHR43757"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01571">
        <property type="entry name" value="GCV_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08669">
        <property type="entry name" value="GCV_T_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101790">
        <property type="entry name" value="SSF101790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00528">
        <property type="entry name" value="gcvT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GCV_T" evidence="8">
        <location>
            <begin position="6"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="domain" description="GCV_T_C" evidence="9">
        <location>
            <begin position="282"/>
            <end position="359"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012616"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00031395"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF08669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO18836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="369" mass="42122" checksum="427778D7E652B592" modified="2015-11-11" version="1">MKKTPLYDTHLAFHAKMVSFHDYVMPLHYDTIINEHQGVRKKAGLFDISHMGRFEIRGDTAFPFIQSVITNDAGKLEDMQVQYTPVCNERGGILDDVLVYKRQRDHFLLIVNCGNKEKDWLWFQRQAASYQQLEIKDLTDTVSLIALQGPLSLWMLEKTFGRKFDCLKRFYFGDFTWEGVRMIISRTGYTGEDGFEIFVDAQHLVKLWNLLMDKNYQDGLIPAGLGARDTLRLEAGLLLYGNDMDETITPLETTIDWTVKFDKDRFVGKEFLLQQKEKGPGRKLAGFEMIDRGIPRHGYPVVKGSAVIGKVTSGSFSPSTNKNIGFCLIQSSYANVGEEFHIHIRGAPYLARVVKAPFYHRKNVTGGCI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV98</accession>
    <name>A0A0M2UV98_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01787</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000186">
        <property type="protein sequence ID" value="KKO19510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19510">
        <property type="protein sequence ID" value="KKO19510"/>
        <property type="gene ID" value="BROFUL_01787"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006158">
        <property type="entry name" value="Cobalamin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036724">
        <property type="entry name" value="Cobalamin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034466">
        <property type="entry name" value="Methyltransferase_Class_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02310">
        <property type="entry name" value="B12-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01123">
        <property type="entry name" value="methyltransferase_(Class_B)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52242">
        <property type="entry name" value="SSF52242"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="B12-binding" evidence="2">
        <location>
            <begin position="17"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="3">
        <location>
            <begin position="196"/>
            <end position="415"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="472" mass="54188" checksum="71A06F183C13C6DC" modified="2015-11-11" version="1">MKILLINPPSENELLGNNPSIIEEERGYNPPLGILYIAGYLERHTDFHVEVLDTQAEEIGYDRLGSIIRSKLPDVVGITTMTFTLIDVIKVVDLVKSVCPHTRVVLGGPHVHIYPEETITLPGVDFLVLGEGEISFKELAENIDNKTRLKSIPGLVFQENGRVINTGSRPLNDDLDSLPFPARHLTPIQKYRSLMAKRTPITTMFTSRGCPYRCTFCDRPHLGKSFRARSALNVVDEMEACVKLGIREFLIYDDTFTIDRQRVIDVCNEITRRRLNIGWDIRARVNNIDRELLKKLKEANCERIHYGVESGNPEILRILNKGITVDRVRTTFKETKDAGISVLAYFMIGCPKETRKEIMETIAFARELKPDFAHITIFTPFPATEIYKTGLKDGIIKHDFWKEFARNPKKGFQPPCWQEHFTREEIQELLVYAYKSFYTRPSYILKRLTHIRSPGEFIRMARAGLKVFGMRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVD0</accession>
    <name>A0A0M2UVD0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01741</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000181">
        <property type="protein sequence ID" value="KKO19540.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19540">
        <property type="protein sequence ID" value="KKO19540"/>
        <property type="gene ID" value="BROFUL_01741"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071586">
        <property type="term" value="P:CAAX-box protein processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003675">
        <property type="entry name" value="Rce1-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02517">
        <property type="entry name" value="Rce1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="56"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="86"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="114"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="140"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="164"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="195"/>
            <end position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19540.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="238" mass="26550" checksum="6DF2F36CA6F073CA" modified="2015-11-11" version="1">MESYYLRSKNIANSFLFILPLLALYEVGIALQGSSIKNASGVFIENFFTLFGKNGHLVFNSLVITFFLISIVYIEKKERLNFQTFVFMFFESMVYALFIGTVLGFFVYQILFPYALAQPFSMNMWLGVILSIGAGVYEEIVFRLLLITALSFIFATLLKVSKPLSAVISIMTAALLFTAMHYVGTLGDVFTNANFTFRALSGVILSAIFLFRGLGIAVYTHAIYDVLSVIKPFHVSGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVD3</accession>
    <name>A0A0M2UVD3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transglutaminase-like superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01290</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20018">
        <property type="protein sequence ID" value="KKO20018"/>
        <property type="gene ID" value="BROFUL_01290"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1593"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002931">
        <property type="entry name" value="Transglutaminase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01841">
        <property type="entry name" value="Transglut_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00460">
        <property type="entry name" value="TGc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="SSF54001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TGc" evidence="1">
        <location>
            <begin position="346"/>
            <end position="411"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="481" mass="53716" checksum="6AB579CE3682EC9F" modified="2015-11-11" version="1">MNGHNPVRVLNPDGADLLFRLVRVAKLKGKIMNWQKTVPAVLVVCILFSGCTILHKETRDTSALLSHAVTRDIQAGIETHIEEQNRLGGGHFILSFRGKELKLKLVRVHTEYLATLETGVHFACVDLACADGTVYDVDFFLSGDPGEMIVTETTVHKVNGKPLYVWKQRSDKTWHRVALDKATPELLGVITGRDEFEFVYRAFLPEINDSAALWLPLPSSDGFQTISVKAIDVPARYKILLEPEYGNRVLFMKLGPEHSGQAVTMRFQVQRLEKGVYDAGTFDEKKYLQPESLMPDEQMFRDLADSIVDGKTGDLVRARALYDYVIDNVRYARFGSGWGQGDAIYACNARSGNCSDFHAFFIALCRSIGIPARFAIGAAIPSERNEGGIDGYHCWAEFYTEGRWWPVDISEANKCSSLASYFFCHHPANRIELSRGRDLKPDPRPVSGPINFLVYPVLEIGGKPAQAKVVFAFSRNPAGRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVF3</accession>
    <name>A0A0M2UVF3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02359</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18966">
        <property type="protein sequence ID" value="KKO18966"/>
        <property type="gene ID" value="BROFUL_02359"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2929"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015424">
        <property type="term" value="F:ABC-type amino acid transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030679">
        <property type="entry name" value="ABC_ATPase_HisP-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF039085">
        <property type="entry name" value="ABC_ATPase_HisP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="2"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="34"/>
            <end position="41"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="251" mass="28041" checksum="4BA45053D1F0D6E6" modified="2015-11-11" version="1">MIEIDNLFKAYDQQFLFKGLHLAMEKGNVVSLIGPSGSGKSTLLRCLNGLELFQRGCIAVDGQRLYGVNEQAYHKEQAALAVKNIRRQVGMVFQQFNLFPHMSVLHNITVAPMHVLGVEQAEAEAQAVSLLRKVHLEKKAQKYPGQLSGGEQQRVAIARALAMKPEAMLFDEPTSSLDPVMIEEVLQVIKDLVVEGMTTIIATHEMGFARDVSTRVIFLDKGEIVEQGSPQEMFFHPQGERTKAFLSRFMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVK7</accession>
    <name>A0A0M2UVK7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative restriction endonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02762</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the type-I restriction system S methylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000260">
        <property type="protein sequence ID" value="KKO18539.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18539">
        <property type="protein sequence ID" value="KKO18539"/>
        <property type="gene ID" value="BROFUL_02762"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3417"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.220.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000055">
        <property type="entry name" value="Restrct_endonuc_typeI_TRD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044946">
        <property type="entry name" value="Restrct_endonuc_typeI_TRD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01420">
        <property type="entry name" value="Methylase_S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0540">Nuclease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0680">Restriction system</keyword>
    <feature type="domain" description="Methylase_S" evidence="4">
        <location>
            <begin position="250"/>
            <end position="379"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010923"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01420"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18539.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="452" mass="51316" checksum="B8A1A4D90C3B72EC" modified="2015-11-11" version="1">MNLKPYPEYKDSGVAWLGDVPRHWAVHPLKRYAKNIINNVISKNSEELYIALEHIEGWTGRFKKNREAKFTGQVKRFSETDVLLGKLRPYLAKVAFPKEKGVCVGEILSIRPNVNYLLGTFLEKSFLSFPFIGIVNGSTYGSKMPRTEWDFIGNLGFPIIPLPEQNQIARFLDYKTAQIARFIKAKKRMIELLKEQKQVIINDAVTGKIDVATGKPYPKYKDSGMEWLGQVPEGWEVLPLRWHILIGSGEFRSGNLIRTEKSSDYQYPVIGGNGVLGYTNSNNSEDNLIIIGRVGALCGNVHYVKESAWITDNALRIDDIRKFQPEFLALQLKAMNLNKLSNANAQPLITGGIIKSQKVVFPPLNEQLEILKYIEHKTAAIGKTISRTEREIALMQEYRTRLISDVVTGKIDVRGIEIPDIADIDDTLDEAMEETEGKDEWETEEAEECIRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVN7</accession>
    <name>A0A0M2UVN7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02722</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000253">
        <property type="protein sequence ID" value="KKO18574.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18574">
        <property type="protein sequence ID" value="KKO18574"/>
        <property type="gene ID" value="BROFUL_02722"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019270">
        <property type="entry name" value="DUF2283"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10049">
        <property type="entry name" value="DUF2283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18574.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="71" mass="8017" checksum="B4DCFD3879C35E6F" modified="2015-11-11" version="1">MKVYYDDEVDALYLKLGDEIPEGVIELSEGVNLDTTSEDKIVGIEILHASKKMDLKTILSYTLEVEKNLVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVQ4</accession>
    <name>A0A0M2UVQ4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative polysaccharide deacetylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01153</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000124">
        <property type="protein sequence ID" value="KKO20128.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20128">
        <property type="protein sequence ID" value="KKO20128"/>
        <property type="gene ID" value="BROFUL_01153"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016810">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011330">
        <property type="entry name" value="Glyco_hydro/deAcase_b/a-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002509">
        <property type="entry name" value="NODB_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01522">
        <property type="entry name" value="Polysacc_deac_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88713">
        <property type="entry name" value="SSF88713"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51677">
        <property type="entry name" value="NODB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NodB homology" evidence="1">
        <location>
            <begin position="89"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20128.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="323" mass="37588" checksum="67BFA938B0724EEF" modified="2015-11-11" version="1">MESILIKTTAKNLIYRVNHWKNKLTDQKNKLLILLYHRVLPEVRFNSRNTVITEKTFIRQIDILRKRYPIISLTDAINQCHTGQAKAKVQVVLTFDDGYWDNYEVAFPILRERGLPATFFLTTDYVGKNEPVWDWEVFTLVMRDCTDTHSIEIENKLLEQRMHEPRLSFAVRVIDSMKSITVDKIQEVTGFLRKHSTNKLTDIRQDCGISWEQAKRMSVCGMEIGAHGVTHRSLSRLPLEEAKQEIDRSKSIIENQIGKPCVHFAFPFGGHNDCAYGLIDHFKKTGFQSCLLNIRGYNHVKQDSFYFKRIVTNEWSSLDHLLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVW3</accession>
    <name>A0A0M2UVW3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Imidazolonepropionase</fullName>
            <ecNumber evidence="2">3.5.2.7</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">hutI</name>
        <name evidence="2" type="ORF">BROFUL_02656</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.2.7" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000243">
        <property type="protein sequence ID" value="KKO18639.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18639">
        <property type="protein sequence ID" value="KKO18639"/>
        <property type="gene ID" value="BROFUL_02656"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050480">
        <property type="term" value="F:imidazolonepropionase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01979">
        <property type="entry name" value="Amidohydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51338">
        <property type="entry name" value="SSF51338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="1">
        <location>
            <begin position="49"/>
            <end position="396"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18639.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="399" mass="44140" checksum="BB54608C6D4882E8" modified="2015-11-11" version="1">MKDSAGVRTVPVDAIAFLQDNVAWNRVSFCIQDGKILSCESRNDPAQFFVTPGFVNCHMHWLMLGEPTLEREIELMKNRPDEMIDIMVENARSTVLKGITACCDKGPPGLETHRIYQGLRTAKSCGLPVPKTLVSTWTISVDGAFASPLSRRVYSQNELEQVIRELHETGAGIMKIIPESGLRLAQFTYDWVFPEAYFAVAREMTARLGLILAIHAKGPESIGMGLKYSVDCIEHATEASVTQLKEMQGKGIYLSPTLEGLWCRLNYATSAGSGVATAAFEWGNATQMFRNAVVLNNGKPFTHFLFGSDAGSACTPHASLRELYLMRKLGLPAEDCLRAAMVNGARFMKLHGSIGQLTPGYCADMIFWRRNPLELDVADWEHLDQYIAAVMLDGNLIEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVZ6</accession>
    <name>A0A0M2UVZ6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01539</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000159">
        <property type="protein sequence ID" value="KKO19750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19750">
        <property type="protein sequence ID" value="KKO19750"/>
        <property type="gene ID" value="BROFUL_01539"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1900"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="26"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="163" mass="18098" checksum="2B0FC6A522967D45" modified="2015-11-11" version="1" fragment="single">KTCNCNKVAEGLIKNLTKERSAMKKILSVLTGLLLIIVLNTPLLAKTNLHGLVLSGQYRKGALLSIPQPDAMKQTLDAVYRVETYPLYTPDLAPGEGKEALQGYCNLCHSVTYITMQPPLPAATWKDEVVKMIDTYGALIPEEETQQIIAYLQAHYTPETRRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWB8</accession>
    <name>A0A0M2UWB8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">SLBB domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01147</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000124">
        <property type="protein sequence ID" value="KKO20122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20122">
        <property type="protein sequence ID" value="KKO20122"/>
        <property type="gene ID" value="BROFUL_01147"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015159">
        <property type="term" value="F:polysaccharide transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003715">
        <property type="entry name" value="Poly_export"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019554">
        <property type="entry name" value="Soluble_ligand-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02563">
        <property type="entry name" value="Poly_export"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10531">
        <property type="entry name" value="SLBB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644058" description="SLBB domain-containing protein" evidence="2">
        <location>
            <begin position="30"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="domain" description="SLBB" evidence="3">
        <location>
            <begin position="114"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF10531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="187" mass="21167" checksum="CD4646E7062166AF" modified="2015-11-11" version="1">MGNALSRRVAFITPFLISMFLVSSLTLCAANLEDEYIINVGDVLDIKVWDNDDLNCTVEVSQQGDFSFPFIEKVHASGLSIFELENIIEKKLADGYLIAPQVKVSLKEYKKQRIFVTGEVINPGEHKWERELTVRQAISMAGGQTERASPKRAIIVRKKDGVEKEFKAKMDDIVMPDDIIRVPGRYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWD9</accession>
    <name>A0A0M2UWD9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">GDP-mannose mannosyl hydrolase</fullName>
            <ecNumber evidence="5">3.6.1.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">gmm</name>
        <name evidence="5" type="ORF">BROFUL_01409</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="2">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.-" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000145">
        <property type="protein sequence ID" value="KKO19895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19895">
        <property type="protein sequence ID" value="KKO19895"/>
        <property type="gene ID" value="BROFUL_01409"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008727">
        <property type="term" value="F:GDP-mannose mannosyl hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033715">
        <property type="entry name" value="GDPMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037599">
        <property type="entry name" value="GDPMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1 2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="4">
        <location>
            <begin position="12"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Nudix box" evidence="3">
        <location>
            <begin position="49"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="48"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="68"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="122"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR037599-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR037599-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="166" mass="19249" checksum="CFA236FEF195DBA3" modified="2015-11-11" version="1">MLEQSKFREIVKNAPLVSMDLIVRNQSNKVLLGLRKHSPAKSTWFVPGGRIWKDEKIDAAFRRITEGEVGIALDLKNARFLGVFEHLYKENFADEPDFGTHYIVIAYEIKLLAEHPALPLIQHSDYQWMSEKHLLQDTAVHPYTKDYFLQGKMADQHLRNLSDTDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWF2</accession>
    <name>A0A0M2UWF2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01956</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19296.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19296">
        <property type="protein sequence ID" value="KKO19296"/>
        <property type="gene ID" value="BROFUL_01956"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="47"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="70"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="92"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="120"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="148"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19296.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="177" mass="20163" checksum="2C4F15A8858A8677" modified="2015-11-11" version="1">MSLSTVIGITCIFLGDLGYFSDNDVLKLIAPISFYLLVYRKDQRDDVLLLIFLIPYFVTSYEFYRHFLATMQSIGSHALIIFCIILVKGKKYLSLLVSTAIGVLINYIGNLSPPGTNDILMNPALITLIIKGLEFYTKNNNYTAFLKAFWATLLCFAFFGSWIFHLIKLIWPLSSNY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWK4</accession>
    <name>A0A0M2UWK4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Patatin-like phospholipase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00828</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000104">
        <property type="protein sequence ID" value="KKO20443.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20443">
        <property type="protein sequence ID" value="KKO20443"/>
        <property type="gene ID" value="BROFUL_00828"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1048"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016035">
        <property type="entry name" value="Acyl_Trfase/lysoPLipase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002641">
        <property type="entry name" value="PNPLA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01734">
        <property type="entry name" value="Patatin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52151">
        <property type="entry name" value="SSF52151"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="254"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="360"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="397"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="428"/>
            <end position="449"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="461"/>
            <end position="479"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="485"/>
            <end position="507"/>
        </location>
    </feature>
    <feature type="domain" description="PNPLA" evidence="3">
        <location>
            <begin position="150"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20443.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="895" mass="102019" checksum="4C119F7349B4A73C" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWR2</accession>
    <name>A0A0M2UWR2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase</fullName>
            <ecNumber evidence="2">3.5.1.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">icaB</name>
        <name evidence="2" type="ORF">BROFUL_00770</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.-" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000098">
        <property type="protein sequence ID" value="KKO20503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20503">
        <property type="protein sequence ID" value="KKO20503"/>
        <property type="gene ID" value="BROFUL_00770"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.976"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016810">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011330">
        <property type="entry name" value="Glyco_hydro/deAcase_b/a-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002509">
        <property type="entry name" value="NODB_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01522">
        <property type="entry name" value="Polysacc_deac_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88713">
        <property type="entry name" value="SSF88713"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51677">
        <property type="entry name" value="NODB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NodB homology" evidence="1">
        <location>
            <begin position="56"/>
            <end position="235"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="235" mass="26536" checksum="00DB98F419361447" modified="2015-11-11" version="1">MYHRVALTAKPSGDRYRITPESFEEQLSYLRNAGYYSINLEDWHNAMEKNEPLPGRAVMITFDDGYLDFLTCAWPLLRKYGFFATVFIVADLVGKTNKWDEIYGEEIPLMGWKDIRRLQDDGVLFGSHSASHPYLTVLPPEQIVREGARSRAILGRELGITVPAFAYPYGDVDPVVQHLIGACGYLYGLSCREDLSTYRDPLLALPRIEVSGADSLQHFITKLGVLQSPDINTTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX30</accession>
    <name>A0A0M2UX30_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FRG domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00649</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000087">
        <property type="protein sequence ID" value="KKO20613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20613">
        <property type="protein sequence ID" value="KKO20613"/>
        <property type="gene ID" value="BROFUL_00649"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.820"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014966">
        <property type="entry name" value="FRG-dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08867">
        <property type="entry name" value="FRG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00901">
        <property type="entry name" value="FRG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FRG" evidence="1">
        <location>
            <begin position="21"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="243" mass="28306" checksum="B575688DE6ACE06C" modified="2015-11-11" version="1">MKEIKVESFSHFIQKIENNCSSDDFLFRGQNNDWPLRPKLGRLVEDGLIRDKSIKIEKLEIKLLETFKRFAKPHINELPQNQFQLLALAQHHGLPTRLLDWTSSPLVALWFTVEKPCENDYGVVWAFEPIKDGYLNNAMEDVELSSIDKTIIFQPELISPRIISQNGWFSVHAFNESKDNFTRFDKIKRYKDLLIKFTIDKSLFKDIRHSLDRCGINQSTMYPGIDGVAGYSSWNHTLLKDES</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXE3</accession>
    <name>A0A0M2UXE3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposase IS66 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00512</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000071">
        <property type="protein sequence ID" value="KKO20753.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20753">
        <property type="protein sequence ID" value="KKO20753"/>
        <property type="gene ID" value="BROFUL_00512"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.641"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004291">
        <property type="entry name" value="Transposase_IS66_central"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03050">
        <property type="entry name" value="DDE_Tnp_IS66"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DDE_Tnp_IS66" evidence="1">
        <location>
            <begin position="2"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20753.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="223" mass="26392" checksum="28D82AE2EC4DBB15" modified="2015-11-11" version="1">MENPYIHVDETPINIQGVDHYVWVFTDGKRVVLRMTETREPTIAHEFLSGYQGILISDFYGGYDAVTGRQQKCLVHLIRDINNDLWDNPYNREYEAFVNDVKNLLVPIFEAEEKYGLKKWHLHKFSKPVDRFYRENIDKTPNKCELIAKYQKRFQRYRDSLFTFLELDGIPWHNNTAENAIRHLAVQRKISGTFFKKVVPQYLLLLGIAQTCKFQNKATLKFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXF8</accession>
    <name>A0A0M2UXF8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">RNA-free ribonuclease P</fullName>
            <shortName evidence="5">RNA-free RNase P</shortName>
            <ecNumber evidence="5">3.1.26.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Protein-only RNase P</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01021</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">RNA-free RNase P that catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>Endonucleolytic cleavage of RNA, removing 5'-extranucleotides from tRNA precursor.</text>
            <dbReference type="EC" id="3.1.26.5"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the HARP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.26.5" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000120">
        <property type="protein sequence ID" value="KKO20255.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20255">
        <property type="protein sequence ID" value="KKO20255"/>
        <property type="gene ID" value="BROFUL_01021"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1282"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004526">
        <property type="term" value="F:ribonuclease P activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001682">
        <property type="term" value="P:tRNA 5'-leader removal"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01078">
        <property type="entry name" value="RNA_free_RNase_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014856">
        <property type="entry name" value="RNA_free_RNase_P"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR41173">
        <property type="entry name" value="PTHR41173"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08745">
        <property type="entry name" value="PIN_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03875">
        <property type="entry name" value="RNA_lig_partner"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 5" id="KW-0540">Nuclease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 5" id="KW-0819">tRNA processing</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20255.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="235" mass="27144" checksum="D611F46AFFF74E0B" modified="2015-11-11" version="1">MEKNIKHGRIIIDTSIFTNPEVYQSFGLNPTAALRTFLEIVGKLEGISFYMPPSIYQELFNFIETKDIPPDLQIRIIQKPPKRYELSVPAFLLYELIEDVRHRIDKGLRVAEEAVRKRIGKSLKISEEIERKRKSSREKSVFLFPDVRMTEEIPYKTESETLEDIAIADLRKKYRAALREGIIDSKEDVDLILLAKELDGILVTADTGIVKWADKLGIRYLDPRMLRGILDKLAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXJ3</accession>
    <name>A0A0M2UXJ3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Ribosome-recycling factor</fullName>
            <shortName evidence="3">RRF</shortName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Ribosome-releasing factor</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">frr</name>
        <name evidence="6" type="ORF">BROFUL_00472</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the RRF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000062">
        <property type="protein sequence ID" value="KKO20803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20803">
        <property type="protein sequence ID" value="KKO20803"/>
        <property type="gene ID" value="BROFUL_00472"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.587"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006415">
        <property type="term" value="P:translational termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00520">
        <property type="entry name" value="RRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.132.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00040">
        <property type="entry name" value="RRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002661">
        <property type="entry name" value="Ribosome_recyc_fac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023584">
        <property type="entry name" value="Ribosome_recyc_fac_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036191">
        <property type="entry name" value="RRF_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20982">
        <property type="entry name" value="PTHR20982"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01765">
        <property type="entry name" value="RRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55194">
        <property type="entry name" value="SSF55194"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00496">
        <property type="entry name" value="frr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 3" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RRF" evidence="5">
        <location>
            <begin position="21"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="140"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01765"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="186" mass="20955" checksum="DFE584E7EEE7A0CD" modified="2015-11-11" version="1">MTKDFICKEARTKMEKIAAHLQEELKGLRTGRASTGLVENIRVECYGNLSPLKQVAVISTPDAQSILIKPYDASIVSNIEKAILQSDVGLTPSVDGKLLRIQIPPLNEERRKKLSTHAKEFGETAKISLRNVRHDANKQVDKEQKESVLAEDDAKRAKDEIQKIIHEYESKLNDSVKKKIEEILKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXL2</accession>
    <name>A0A0M2UXL2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00452</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000059">
        <property type="protein sequence ID" value="KKO20823.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20823">
        <property type="protein sequence ID" value="KKO20823"/>
        <property type="gene ID" value="BROFUL_00452"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20823.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="65" mass="7609" checksum="58639905CA1382F5" modified="2015-11-11" version="1" fragment="single">GRLLRKRPLAMTATMHFDGTLHVVIASEAKQSFPHKKRYLLKGVCEKTYRKKKFLYSNTIREDSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXM7</accession>
    <name>A0A0M2UXM7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02073</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000208">
        <property type="protein sequence ID" value="KKO19229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19229">
        <property type="protein sequence ID" value="KKO19229"/>
        <property type="gene ID" value="BROFUL_02073"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="70" mass="8073" checksum="855D2EEC27B12CC0" modified="2015-11-11" version="1" fragment="single">QPQPNFLYESGEIASEKAPRNDSDHALFDGTRHVVIASKAKQSFTHKKRYLLKGVCEKTYKKRSFYTVIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXM8</accession>
    <name>A0A0M2UXM8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Bicarbonate transport system permease protein CmpB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">cmpB</name>
        <name evidence="6" type="ORF">BROFUL_00433</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000057">
        <property type="protein sequence ID" value="KKO20848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20848">
        <property type="protein sequence ID" value="KKO20848"/>
        <property type="gene ID" value="BROFUL_00433"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.540"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="6"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="40"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="85"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="165"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="216"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="314"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="347"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="387"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="414"/>
            <end position="441"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="462"/>
            <end position="484"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="518"/>
            <end position="540"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="44"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="349"/>
            <end position="539"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="554" mass="61627" checksum="1B32A466A465157E" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXP3</accession>
    <name>A0A0M2UXP3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01553</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000162">
        <property type="protein sequence ID" value="KKO19731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19731">
        <property type="protein sequence ID" value="KKO19731"/>
        <property type="gene ID" value="BROFUL_01553"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="512" mass="55732" checksum="7D9166AF659CD66C" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXS1</accession>
    <name>A0A0M2UXS1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Translation elongation factor P</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00891</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000109">
        <property type="protein sequence ID" value="KKO20370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20370">
        <property type="protein sequence ID" value="KKO20370"/>
        <property type="gene ID" value="BROFUL_00891"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1126"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="1" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="204" mass="23614" checksum="12DFC742B34F577A" modified="2015-11-11" version="1">MNIFLKIARLLYSKIKYFGGILLWTPIYLRFYIKSHRQFFDIFTHLTKKERLLLYKLVLSLPNKAIVVEIGSYLGASTVFLASAIKDRDGHIYCVDTWSNEAMSEGKRDTFDEFLKNTGSMKDFITPLKGYSVEVAKTFNKGIDLLFIDGDHSYEATKSDVENWVPKVKDCGIIIFHDIGWAEGVKRVVNEFKSKFQYRRTHCG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXX0</accession>
    <name>A0A0M2UXX0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00569</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000079">
        <property type="protein sequence ID" value="KKO20702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20702">
        <property type="protein sequence ID" value="KKO20702"/>
        <property type="gene ID" value="BROFUL_00569"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004129">
        <property type="term" value="F:cytochrome-c oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009060">
        <property type="term" value="P:aerobic respiration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3910.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.210.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036927">
        <property type="entry name" value="Cyt_c_oxase-like_su1_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000883">
        <property type="entry name" value="Cyt_C_Oxase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038062">
        <property type="entry name" value="ScdA-like_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00115">
        <property type="entry name" value="COX1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140683">
        <property type="entry name" value="SSF140683"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81442">
        <property type="entry name" value="SSF81442"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="89"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="130"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="159"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="189"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="224"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="267"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="299"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="330"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="370"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="403"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="442"/>
            <end position="461"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="467"/>
            <end position="490"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="506" mass="57309" checksum="DE8B1F82C2C15099" modified="2015-11-11" version="1">MEINRNTIIKDLIESHPETLAVFKKYNLVIAGGVRGPNEPIAFFAKAHEVNYDILVQELNEAIAKGGGEPIELPTLEEDKIYEKFVKTAIILTLTVGVTFGAVILSYIAVKFSFHSIYYAMIQAHGHAQLFGWVGLCIMGFALYIIPRVKNTELRHRNLTNICYGFIIAGLLLRVLLQPTPFRSLRILVFISAILEIISIYLFAFIILRTIFASKEKPGIFDKFFKAGIIWLIISTFINLGMTIYLYNHAIYEIPRTVFSPFVHLYLFGFVFMFIFAINIRTVFAFLDIKPVREKAVNLTFWVLNISVPIYFVAHVFAHRSVIAFRFSQGIAFPIAFALISFIYGLRIFERSTKELQDVVMDRSYAKTIRTAYLWLIVTAAILLVIPFLGLGSEMQQRFHGSLNHAVTVGFITMMIIGYASKMIPTFKGIDMHSLKLSNMTFILLNTGCFLRVFSQIMVGVSEKPVYYVVMGTSGWFELAALGIFGYNLWKTMNTTQVAKSPAALS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXY3</accession>
    <name>A0A0M2UXY3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01989</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19329.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19329">
        <property type="protein sequence ID" value="KKO19329"/>
        <property type="gene ID" value="BROFUL_01989"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2475"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140658">
        <property type="term" value="F:ATP-dependent chromatin remodeler activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10810">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038718">
        <property type="entry name" value="SNF2-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000330">
        <property type="entry name" value="SNF2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007527">
        <property type="entry name" value="Znf_SWIM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00176">
        <property type="entry name" value="SNF2-rel_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50966">
        <property type="entry name" value="ZF_SWIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="SWIM-type" evidence="2">
        <location>
            <begin position="57"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase ATP-binding" evidence="3">
        <location>
            <begin position="462"/>
            <end position="620"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="4">
        <location>
            <begin position="748"/>
            <end position="897"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19329.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="911" mass="104371" checksum="72C432701727FD41" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXZ1</accession>
    <name>A0A0M2UXZ1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putative glycosylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_00860</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000105">
        <property type="protein sequence ID" value="KKO20435.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20435">
        <property type="protein sequence ID" value="KKO20435"/>
        <property type="gene ID" value="BROFUL_00860"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1086"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016798">
        <property type="term" value="F:hydrolase activity, acting on glycosyl bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00056">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1670.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011257">
        <property type="entry name" value="DNA_glycosylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003265">
        <property type="entry name" value="HhH-GPD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023170">
        <property type="entry name" value="HhH_base_excis_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000445">
        <property type="entry name" value="HhH_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003583">
        <property type="entry name" value="Hlx-hairpin-Hlx_DNA-bd_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00633">
        <property type="entry name" value="HHH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00730">
        <property type="entry name" value="HhH-GPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00478">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00278">
        <property type="entry name" value="HhH1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48150">
        <property type="entry name" value="SSF48150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="3" id="KW-0234">DNA repair</keyword>
    <keyword evidence="4" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ENDO3c" evidence="6">
        <location>
            <begin position="38"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="domain" description="HhH1" evidence="5">
        <location>
            <begin position="118"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20435.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="214" mass="24617" checksum="A875D1B3282A96B0" modified="2015-11-11" version="1">MNKAKAILQIYQTMLDTLGPQQWWPGETPFEIVIGAILTQNTNWSNVEKAIRNLKTAGKLSPRGIHELSMLELAQLIRPSGFFNVKAKRVKAFINWLFSRYEGNLSRMFNQDLQILRDELLSVKGIGPETADSILLYAGNMPTFVVDAYTHRIFSRHGFIAEESTYDEMKAFFEENLPKDVTLYNEYHALLVHIGKRYCRPKKACEPCPLKDFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY25</accession>
    <name>A0A0M2UY25_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Translation initiation factor IF-1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">infA</name>
        <name evidence="5" type="ORF">BROFUL_01901</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Component of the 30S ribosomal translation pre-initiation complex which assembles on the 30S ribosome in the order IF-2 and IF-3, IF-1 and N-formylmethionyl-tRNA(fMet); mRNA recruitment can occur at any time during PIC assembly.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the IF-1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19374">
        <property type="protein sequence ID" value="KKO19374"/>
        <property type="gene ID" value="BROFUL_01901"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2370"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04451">
        <property type="entry name" value="S1_IF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00075">
        <property type="entry name" value="IF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006196">
        <property type="entry name" value="RNA-binding_domain_S1_IF1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022967">
        <property type="entry name" value="S1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004368">
        <property type="entry name" value="TIF_IF1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33370">
        <property type="entry name" value="PTHR33370"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01176">
        <property type="entry name" value="eIF-1a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00008">
        <property type="entry name" value="infA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50832">
        <property type="entry name" value="S1_IF1_TYPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 2 3" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="2 3" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="S1-like" evidence="4">
        <location>
            <begin position="1"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="72" mass="8332" checksum="C9EE552667B63970" modified="2015-11-11" version="1">MPKEEPIRVEATVKEALPNAMFWVELQNGHKVLAHVSGKMRMHFIKILPGDKVTIEMSPYDLDKGRIIYRQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY42</accession>
    <name>A0A0M2UY42_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01394</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000145">
        <property type="protein sequence ID" value="KKO19881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19881">
        <property type="protein sequence ID" value="KKO19881"/>
        <property type="gene ID" value="BROFUL_01394"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="SSF50978"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19881.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="346" mass="39230" checksum="E1974700EC840985" modified="2015-11-11" version="1">MLKRNKMRIVHLFRGIVFGISLFSSINILFADEWNLAIETPKAEWGLLEEPSPKYKWGLESPTVTHKKSDSIVMHYNGKAWSCVYNAYSAWLNCIYGFDPNNIFAAGDNGVVLHYNGNSWIKQKTRVTSRLNRIWGISPKNIYISGDQGAILHYNGTEWKKYTMMTATWFSSTWGIDAKSIFIAGALGKILHYNGKKWIEQESGTSNWLYGISGNSADNVYAVGDYGTLLHYNGKEWKKIILNTNKRLTSVCVPDANSVFVVGADGLILHYDGMHWSRQRSGTDNWLRKIWAIDDNTIFAIGDNGTILSYDGKKWSKQKSGTNYLLLGIWGNRRDSVYVVGIKPKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY57</accession>
    <name>A0A0M2UY57_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF362 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01871</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000194">
        <property type="protein sequence ID" value="KKO19409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19409">
        <property type="protein sequence ID" value="KKO19409"/>
        <property type="gene ID" value="BROFUL_01871"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007160">
        <property type="entry name" value="DUF362"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04015">
        <property type="entry name" value="DUF362"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644157" description="DUF362 domain-containing protein" evidence="1">
        <location>
            <begin position="25"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="domain" description="DUF362" evidence="2">
        <location>
            <begin position="103"/>
            <end position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="343" mass="37767" checksum="0D611FAA141E022A" modified="2015-11-11" version="1">MKINKERRLFLKKALSLGSGACTAAFMGKHLLNYPFPVAWGADDVAPIPSAVIMARDDHLFDATGKIREKTVSSLLHKAVMQLTSAPSPEKAWQSLFRPDEIVGLKLNCLSGKTMSPHVEVVDSIINGLKLAGLKDKNIIVFERFNRELEAAGFRVRRMTEGIQCFGTDELPGGGYEAEPAFAGSVGTCFSKIVSRLCTAIVNVPVLKDHDLAGISVAMKNFFGVIHNPNKYHGNNCNPFIAELNTHPYLAKKVRLNICDALLAQYHGGPGYKPQWTWNFNGIIVSKDPVAMDRICHTIIEEKRKEIKLPSLKQANREPKYITTAATLGLGVDDLSEINVVQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYG1</accession>
    <name>A0A0M2UYG1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00393</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000052">
        <property type="protein sequence ID" value="KKO20877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20877">
        <property type="protein sequence ID" value="KKO20877"/>
        <property type="gene ID" value="BROFUL_00393"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="115" mass="13003" checksum="FB27B2E480E587AB" modified="2015-11-11" version="1">MKRNKGFQTGVNRRLPVLDRMNQPIPKGVISLGTTGRQGNNAELFQLEKEAATCHIFVLAIVCFPIPGNAEFPGEFRPMPMGVFVHEALDTLDIRGRDAAPTYCYGYFHDWEYNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYJ3</accession>
    <name>A0A0M2UYJ3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DDE_Tnp_IS66 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00379</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000048">
        <property type="protein sequence ID" value="KKO20892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20892">
        <property type="protein sequence ID" value="KKO20892"/>
        <property type="gene ID" value="BROFUL_00379"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.471"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004291">
        <property type="entry name" value="Transposase_IS66_central"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03050">
        <property type="entry name" value="DDE_Tnp_IS66"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DDE_Tnp_IS66" evidence="2">
        <location>
            <begin position="6"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="91"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="206" mass="23956" checksum="2139E28D37F523F7" modified="2015-11-11" version="1">MDSIGILPQFRGILCHDHLKAYYTYTRCTHALCNAHHLRELEGVWEEDKKQPWAKEMKALLEEINRAVKDAGGLLENGESEKYRQRYRGILQNAEAESPPPDETNRKGKRGRVKRTKARNLLERLREYEGDVLRFMDNKNVPFTNNLAENDIRMTKVQQKISGCFRSLDGAKIFCLIRSYLSTCRKQGVNLSQALRIRYCRAKLPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYQ5</accession>
    <name>A0A0M2UYQ5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00532</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000074">
        <property type="protein sequence ID" value="KKO20740.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20740">
        <property type="protein sequence ID" value="KKO20740"/>
        <property type="gene ID" value="BROFUL_00532"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20740.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="455" mass="50854" checksum="F2411F149D52283A" modified="2015-11-11" version="1">MKKPMILKQGIRNAFRATKKITLPFFLVTVVGFLGCSSREFKNGVVYKEWTRTMSEEGIFPVFPPREDVQVGDIWLLPTHPYETKLIEDIGGLGKTGIWVTNVLYELKLMYGTSTLANDFYKNRFSFPSTTEAIKNAISKDQAHLTDVSIMPVVIGNKDVFNDGDCNRLRQVAFPEFSVTNITQADVNALVPIEYLNVALGFSFNKIGQVSLKIPSAESYAIPAKLLTKTFFETNSIELGKENNFILKPYVYNSTDTVNRFQGIAGINYITLKLAKSQFDEAAKIILGDKKGLIAYRDFLWIAVINEVYYARAIDMNIRKRRFGGGAANVQPITTKMLKELDRLTKIGASKKSKITETSPIKEDTEGRTIAENIEIKEEDDAFALAKKINEYNKNLGNQSVPGGSVNVVSASDTAIGLRRFFDRPIAVGVRGIIFKVNLTKSTEKELYIESIGLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYT2</accession>
    <name>A0A0M2UYT2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Histidinol dehydrogenase</fullName>
            <shortName evidence="4">HDH</shortName>
            <ecNumber evidence="4">1.1.1.23</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">hisD</name>
        <name evidence="11" type="ORF">BROFUL_00502</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the sequential NAD-dependent oxidations of L-histidinol to L-histidinaldehyde and then to L-histidine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>H2O + L-histidinol + 2 NAD(+) = 3 H(+) + L-histidine + 2 NADH</text>
            <dbReference type="Rhea" id="RHEA:20641"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57595"/>
            <dbReference type="ChEBI" id="CHEBI:57699"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.1.1.23"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4 9">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="4 9">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 9/9.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 5 10">Belongs to the histidinol dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.23" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000069">
        <property type="protein sequence ID" value="KKO20775.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20775">
        <property type="protein sequence ID" value="KKO20775"/>
        <property type="gene ID" value="BROFUL_00502"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.630"/>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00014"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004399">
        <property type="term" value="F:histidinol dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06572">
        <property type="entry name" value="Histidinol_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01024">
        <property type="entry name" value="HisD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001692">
        <property type="entry name" value="Histidinol_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022695">
        <property type="entry name" value="Histidinol_DH_monofunct"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012131">
        <property type="entry name" value="Hstdl_DH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21256">
        <property type="entry name" value="PTHR21256"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00815">
        <property type="entry name" value="Histidinol_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000099">
        <property type="entry name" value="Histidinol_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00083">
        <property type="entry name" value="HOLDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00069">
        <property type="entry name" value="hisD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00611">
        <property type="entry name" value="HISOL_DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="4" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="1 4 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 7" id="KW-0520">NAD</keyword>
    <keyword evidence="3 4 5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4 9" id="KW-0862">Zinc</keyword>
    <feature type="active site" description="Proton acceptor" evidence="4 6">
        <location>
            <position position="329"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="4 6">
        <location>
            <position position="330"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4 7">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 7">
        <location>
            <position position="194"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 7">
        <location>
            <position position="217"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 8">
        <location>
            <position position="240"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 8 9">
        <location>
            <position position="262"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4 8 9">
        <location>
            <position position="265"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4 8">
        <location>
            <position position="330"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 8 9">
        <location>
            <position position="363"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4 8">
        <location>
            <position position="417"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 8 9">
        <location>
            <position position="422"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR000099"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000099-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000099-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000099-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000099-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU004175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO20775.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="446" mass="48926" checksum="B1963DBDA8C58E50" modified="2015-11-11" version="1">MIRILRTWEGNVDREIDKLKQTLNLFDGLAAQSATVQKIIHDVKKQKDAALVKYGKRFDRVRLLPKDFRVTEKEFEEAYRKISRPFIRSIQKAVKNIWTYQEHIRIRKVSPLKADGIVLDTVYAPLESAGVYVPGGAASYPSTVLMNAIPARVAGVKKIIMTTPPSRDGTIPPERLVAAREADVSDIYKVGGAQAITALAFGTETIPRVDKIVGPGNIFVTLAKKEIFGYAGIDMLAGPSEVVIVADGHADPSFVASDLLSQAEHTPGISILVTCSAELAEQVNLELKRQIMRIKRHAGTRECLEKFGVILLTKNLEACIEAANALAPEHLQVMTKNPRTLLSRLKHAGAIFLGPYTPVAVGDYIAGPSHVLPTGGTARFSSGLSVNDFLKRYSVITYSKPALRKAYQDIAEISGAEGLDAHTWSVQIRLGLQDNKSQKTEKKHKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYU3</accession>
    <name>A0A0M2UYU3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00275</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000032">
        <property type="protein sequence ID" value="KKO20992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20992">
        <property type="protein sequence ID" value="KKO20992"/>
        <property type="gene ID" value="BROFUL_00275"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="226" mass="25525" checksum="ABAAA48B27D6B59A" modified="2015-11-11" version="1">MKIFRLSYAFHMGYLREDLVQEMKLIQQFDTDMWIGAGKDLLHLFPDAFGAHYVNLGCKPDNGLLGITMNGKLKSACEAHCPYHTQLIFSKSHNGISDRSDYPLGNIFPPAGIIKDLIRYRIVKQAIYGKISSFDILLWGAKGYIIRMTSITVRTFCAEGSYLKGMTIFGNNDHSELSANRNSFFEEFHDVLWRGAGSDIIVGRFLSHNHIAHTATRKKGFITALL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYU5</accession>
    <name>A0A0M2UYU5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">30S ribosomal protein S21</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rpsU</name>
        <name evidence="7" type="ORF">BROFUL_01143</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4 5">Belongs to the bacterial ribosomal protein bS21 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000123">
        <property type="protein sequence ID" value="KKO20141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20141">
        <property type="protein sequence ID" value="KKO20141"/>
        <property type="gene ID" value="BROFUL_01143"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.1150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00358">
        <property type="entry name" value="Ribosomal_S21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001911">
        <property type="entry name" value="Ribosomal_S21"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038380">
        <property type="entry name" value="S21_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21109">
        <property type="entry name" value="PTHR21109"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01165">
        <property type="entry name" value="Ribosomal_S21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00976">
        <property type="entry name" value="RIBOSOMALS21"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00030">
        <property type="entry name" value="S21p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="63"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="66"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000667"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="84" mass="9940" checksum="547955B9372BA293" modified="2015-11-11" version="1">MAKIQITSDENIREALRRFKKMCDKEGIINQSKRIAYFEKPSERKRREESRRIKNIKRAQKLGISGLATPSRTQKNTYSKYSSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYV0</accession>
    <name>A0A0M2UYV0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator of Crp/Fnr family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">crp_1</name>
        <name evidence="2" type="ORF">BROFUL_01674</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19639.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19639">
        <property type="protein sequence ID" value="KKO19639"/>
        <property type="gene ID" value="BROFUL_01674"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00038">
        <property type="entry name" value="CAP_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018490">
        <property type="entry name" value="cNMP-bd-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018488">
        <property type="entry name" value="cNMP-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000595">
        <property type="entry name" value="cNMP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00027">
        <property type="entry name" value="cNMP_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00100">
        <property type="entry name" value="cNMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51206">
        <property type="entry name" value="SSF51206"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00889">
        <property type="entry name" value="CNMP_BINDING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50042">
        <property type="entry name" value="CNMP_BINDING_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cyclic nucleotide-binding" evidence="1">
        <location>
            <begin position="4"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19639.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="180" mass="20174" checksum="42FB06C7A81C5F59" modified="2015-11-11" version="1">MSEESLLGRLYKDNETIVEEGMQSRTMYVIQGGKVKVVKNDNGNETILALLGEGDIFGEMSLFDASPRSATIKAIGEARVLAIEHEGLLKRIKMDPTLALRMIKQMCQRIRDLNARLIAAKTAMHQASDGLVQMKKAEVVSIKDLEPRIGVIVTQLQEKLRALTEQYVHEDESLHKVKML</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYY2</accession>
    <name>A0A0M2UYY2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Helix-turn-helix protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01611</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19679">
        <property type="protein sequence ID" value="KKO19679"/>
        <property type="gene ID" value="BROFUL_01611"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1990"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025272">
        <property type="entry name" value="SocA_Panacea"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13274">
        <property type="entry name" value="DUF4065"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="13"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19679.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="264" mass="30540" checksum="4EA6382BCBCF3489" modified="2015-11-11" version="1">MANYHISKHSKFIQQMRKKRNLTQEYLASKIGVSRPTYIQIEQGEKDLTISSAKTLADIFGISFDDFIGGKEPRHEVILEKVSAGKKTDSSLQIRVTRKNLDKFKQVLLYILEKVGGKPNVGETVLHKLLYFIDFDYYEKFEENLMGATYIKNHHGPTSVELGTILKDMQKNGEIEAVKSKYFNHLQKKYLPVKRADLNALSAREIGHIEEVLARLSDKNAKEIENYSHEDIPWKAAKEGQPISYESVFYRDERYSVRNYDDDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZD2</accession>
    <name>A0A0M2UZD2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Twitching motility protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00096</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GSP E family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000010">
        <property type="protein sequence ID" value="KKO21177.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21177">
        <property type="protein sequence ID" value="KKO21177"/>
        <property type="gene ID" value="BROFUL_00096"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.122"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01131">
        <property type="entry name" value="PilT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006321">
        <property type="entry name" value="PilT/PilU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001482">
        <property type="entry name" value="T2SS/T4SS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00437">
        <property type="entry name" value="T2SSE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01420">
        <property type="entry name" value="pilT_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00662">
        <property type="entry name" value="T2SP_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="T2SP_E" evidence="2">
        <location>
            <begin position="193"/>
            <end position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS00662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO21177.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="349" mass="38586" checksum="09E71E5A74C99CA3" modified="2015-11-11" version="1">MEILELLAFAKKENASDIHISSGEPPMIRIHGDVRKIDAPPLDREAVHKMLYDILNDQQRKVYEERHELDFAIALSTSGRFRVNAFVQNRGESIVFRTIPVNILTLEQLNMPKIVGDLTKKEKGLVLVTGPTGSGKSTTLAAMIDLINREEKCHILTVEDPIEFVHQSKNSLVNQRELGSHTHSFANALRSALREDPDIILVGEMRDLETISLALTAAETGHLVFGTLHTSSAPKTVDRIIDVFPPNQQEQVRTMFSESLQAVITQQLVKKKDGTGRVAALEIMIGTPAVRNLIRENKIAQIPSSIQTGRQHGMQTMDQSLIELCQKGLVAKESIETLVSSPSALGGLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZJ2</accession>
    <name>A0A0M2UZJ2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Tnp_DDE_dom domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00016</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000004">
        <property type="protein sequence ID" value="KKO21252.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21252">
        <property type="protein sequence ID" value="KKO21252"/>
        <property type="gene ID" value="BROFUL_00016"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025668">
        <property type="entry name" value="Tnp_DDE_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13701">
        <property type="entry name" value="DDE_Tnp_1_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tnp_DDE_dom" evidence="1">
        <location>
            <begin position="2"/>
            <end position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21252.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="261" mass="30070" checksum="54AF1A7673AC91F2" modified="2015-11-11" version="1">MIAFVAETKEILHSWFRCGSAYMGNGIVEFMRECMAYTKKRVRVIFRGDSGFFSGELLDYLESVSAGYLIKVKLKNLVGLLEGQKWEAVEGHAGWEQADFTYRCGEWNRARRFVAVKKLIKIERGGLFPIPVYEYFCYVTTERFGPIEAHWSYGKRATCETWIEECKSQMNAGHLRTGEFLANAALFQCAVLAYNLLKWMALLTGGLVQQWEVKTMRLWLIRVAGKLTKGSRQLTLKLPEKFLHQEEWRAWEGMSLSVAFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZM5</accession>
    <name>A0A0M2UZM5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glyco_trans_2-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00841</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000105">
        <property type="protein sequence ID" value="KKO20416.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20416">
        <property type="protein sequence ID" value="KKO20416"/>
        <property type="gene ID" value="BROFUL_00841"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="7"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20416.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="243" mass="28037" checksum="17A637475A341C6C" modified="2015-11-11" version="1">MKTPDISIVIPLYNEAENIALLGHSILHAMEGQNYEVVFVNDGSTDGSTEKLNAWCDKHENFRTIHFKRNAGQTAAMDAGFKSAVGKYIVSMDADMQNDPADIPKVLEKLTTYDMVCGWRQRRNDPWIKRISSTVANSIRNKLSWENIKDTGCSLKAYRKECLNQIKLFNGMHRFLPTLFKMEGFTVIEIVVNHYPRKFGKSKYGISNRAFRAFIDLLAVRWMKKRLMRYEIVERLNQEGAYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZN2</accession>
    <name>A0A0M2UZN2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4">GDP-mannose 4,6-dehydratase</fullName>
            <ecNumber evidence="3 4">4.2.1.47</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">GDP-D-mannose dehydratase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">gmd</name>
        <name evidence="6" type="ORF">BROFUL_00202</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6-deoxy-D-mannose.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>GDP-alpha-D-mannose = GDP-4-dehydro-alpha-D-rhamnose + H2O</text>
            <dbReference type="Rhea" id="RHEA:23820"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:57527"/>
            <dbReference type="ChEBI" id="CHEBI:57964"/>
            <dbReference type="EC" id="4.2.1.47"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 4">
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the NAD(P)-dependent epimerase/dehydratase family. GDP-mannose 4,6-dehydratase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.47" evidence="3 4"/>
    <dbReference type="EMBL" id="LAQJ01000025">
        <property type="protein sequence ID" value="KKO21065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21065">
        <property type="protein sequence ID" value="KKO21065"/>
        <property type="gene ID" value="BROFUL_00202"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.246"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008446">
        <property type="term" value="F:GDP-mannose 4,6-dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070401">
        <property type="term" value="F:NADP+ binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019673">
        <property type="term" value="P:GDP-mannose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00955">
        <property type="entry name" value="GDP_Man_dehydratase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006368">
        <property type="entry name" value="GDP_Man_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016040">
        <property type="entry name" value="NAD(P)-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43715">
        <property type="entry name" value="PTHR43715"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16363">
        <property type="entry name" value="GDP_Man_Dehyd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01472">
        <property type="entry name" value="gmd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-0521">NADP</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD(P)-bd_dom" evidence="5">
        <location>
            <begin position="5"/>
            <end position="342"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00955"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF16363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO21065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="384" mass="44131" checksum="E71663665FF61243" modified="2015-11-11" version="1">MKKALITGITGQDGSYLAEFLLSKGYEVHGIIRRASTFNTHRIDHIYIDPHTPKAKLLLHYGDLSDPGLITEIVWNIKPDEIYHLGAQSHVRVSFDMPEFTGNITGLGTTRILEAIRRSGIKTRFYQASSSEMFGASLPPQNEKTPFYPRSPYAVAKLYAYWITVNYREGYRLFACNGILFNHESPRRGETFVTRKITKAIANILTGKQKKIFMGNLNAKRDWGFAPEYVEAMWLMNQQDEPDDYVIGTGESYSVKEFVEKACKYAGIEIEWKGEGIEEKGFIKSIDKRWRDNLKPGGVLIEIDPKYFRPTEVEHLKSDITKAKQKLNWQPRTTFDELIKIMVDYDMQLMGLTPLGKGIEISKKKGFEYTDHDFSFYEKVREGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZQ9</accession>
    <name>A0A0M2UZQ9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">NUDIX hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01248</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO19979.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19979">
        <property type="protein sequence ID" value="KKO19979"/>
        <property type="gene ID" value="BROFUL_01248"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1545"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="2">
        <location>
            <begin position="30"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19979.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="165" mass="18791" checksum="08FC5AA497F4FEBE" modified="2015-11-11" version="1">MLIYSGKKINVRKDEVLLEDGRKVIREVIEHPGSAAIIPFLSDDEIVLLQQYRYPMKETLYEIPAGTLNKGETFIECAGRELEEETGYRAGNLEPLIVLYPSPGILSETMHLFKATNLVKTQTNYQMDESIKGSIRVKVCNALEMIRKGIIRDAKTVCSILWCRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V008</accession>
    <name>A0A0M2V008_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00067</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000008">
        <property type="protein sequence ID" value="KKO21185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21185">
        <property type="protein sequence ID" value="KKO21185"/>
        <property type="gene ID" value="BROFUL_00067"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="72" mass="8518" checksum="46A17B2BFE9B96C8" modified="2015-11-11" version="1">MAEMASDFEIRKKGLSVLFKNLGEVDAMRFLSQITYEKRDSLKLQEELFEGMTVDEIYKKAEEYFEKKQQKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V027</accession>
    <name>A0A0M2V027_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">YfiO domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01174</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000126">
        <property type="protein sequence ID" value="KKO20099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20099">
        <property type="protein sequence ID" value="KKO20099"/>
        <property type="gene ID" value="BROFUL_01174"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039565">
        <property type="entry name" value="BamD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13525">
        <property type="entry name" value="YfiO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YfiO" evidence="1">
        <location>
            <begin position="73"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="147" mass="17075" checksum="42D39D296B9DD134" modified="2015-11-11" version="1">MTYPDAAVREFINKNFIPLQINVQSGSDLPGKYRAFWTPTILVLDSLGIEYYRFNGFLPPEEFLPQLHFGLAFMALERQDYKTASAQLKATVDRYPRSDIAPEAQYWYGVSEYKGSHNVDALLQAWRKIRKDYPQSIWAKKVSFVKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V043</accession>
    <name>A0A0M2V043_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Two-component sensor kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_01189</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000126">
        <property type="protein sequence ID" value="KKO20114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20114">
        <property type="protein sequence ID" value="KKO20114"/>
        <property type="gene ID" value="BROFUL_01189"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033479">
        <property type="entry name" value="dCache_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013656">
        <property type="entry name" value="PAS_4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02743">
        <property type="entry name" value="dCache_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08448">
        <property type="entry name" value="PAS_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9" id="KW-0418">Kinase</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0808">Transferase</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="295"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="8">
        <location>
            <begin position="319"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="7">
        <location>
            <begin position="383"/>
            <end position="453"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="498" mass="55322" checksum="003C5418AD66DDE4" modified="2015-11-11" version="1">MNPLASIRGKLLVLTLCISSLPIATISTIYYLTAKHTLRRQVLEQLKAVAASKRLHIQAFMEIKKMRTADFSSDGFIQNSLETIIRKNAGRGSRAGNLNRYLAKKKLPLDGHLIAIAIADRDGKVVASTNKTLIGRDMSAQEIFLQAKNLDYGQTYMKPRHASYLAANCILSSAPIRSQQNAEALGILINAYYFTGLNDITTNRVGLGETGEAYLVNRDKVILTESRFIGQAPFQLVVDTEPIRRILEKNQEMVGIYPDYRGVPVVGTSMDIPEYGWTLLTEIDEAEVFASLKTIGVIALIIGIAGAAVAAGVGIAFATSLSRPIKDFARKAETFGRGKLDYRIEVNRRDEIGDLASSFNAMADALSKEITEHKRFAEALRKSKEQSQAILDNTSAVIYLKDTSCRYLLINRQYEKLFHVTKEEVVGKTDYDLFPKENADAFRLNDQKVLETRRSMVVKELAPHDDGMHTYISLKFPMYDTVEGLYGVCGISTDITGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0C6</accession>
    <name>A0A0M2V0C6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative cobaltochelatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00634</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20651">
        <property type="protein sequence ID" value="KKO20651"/>
        <property type="gene ID" value="BROFUL_00634"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.801"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd10150">
        <property type="entry name" value="CobN_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003672">
        <property type="entry name" value="CobN/Mg_chltase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44119">
        <property type="entry name" value="PTHR44119"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02514">
        <property type="entry name" value="CobN-Mg_chel"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644327" evidence="3">
        <location>
            <begin position="23"/>
            <end position="1378"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="1356"/>
            <end position="1374"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1269"/>
            <end position="1290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1378" mass="156650" checksum="8FB240BCBD6D7017" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0N5</accession>
    <name>A0A0M2V0N5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 9">4-hydroxy-tetrahydrodipicolinate synthase</fullName>
            <shortName evidence="9">HTPA synthase</shortName>
            <ecNumber evidence="4 9">4.3.3.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">dapA</name>
        <name evidence="11" type="ORF">BROFUL_00988</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 9">Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>L-aspartate 4-semialdehyde + pyruvate = (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + H(+) + H2O</text>
            <dbReference type="Rhea" id="RHEA:34171"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:67139"/>
            <dbReference type="ChEBI" id="CHEBI:537519"/>
            <dbReference type="EC" id="4.3.3.7"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 9">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 3/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homotetramer; dimer of dimers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9 10">Belongs to the DapA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Was originally thought to be a dihydrodipicolinate synthase (DHDPS), catalyzing the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to dihydrodipicolinate (DHDP). However, it was shown in E.coli that the product of the enzymatic reaction is not dihydrodipicolinate but in fact (4S)-4-hydroxy-2,3,4,5-tetrahydro-(2S)-dipicolinic acid (HTPA), and that the consecutive dehydration reaction leading to DHDP is not spontaneous but catalyzed by DapB.</text>
    </comment>
    <dbReference type="EC" id="4.3.3.7" evidence="4 9"/>
    <dbReference type="EMBL" id="LAQJ01000118">
        <property type="protein sequence ID" value="KKO20279.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20279">
        <property type="protein sequence ID" value="KKO20279"/>
        <property type="gene ID" value="BROFUL_00988"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1238"/>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00017"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008840">
        <property type="term" value="F:4-hydroxy-tetrahydrodipicolinate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019877">
        <property type="term" value="P:diaminopimelate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00950">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00418">
        <property type="entry name" value="DapA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005263">
        <property type="entry name" value="DapA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002220">
        <property type="entry name" value="DapA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020625">
        <property type="entry name" value="Schiff_base-form_aldolases_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020624">
        <property type="entry name" value="Schiff_base-form_aldolases_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12128">
        <property type="entry name" value="PTHR12128"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00701">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001365">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00146">
        <property type="entry name" value="DHPICSNTHASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01130">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00674">
        <property type="entry name" value="dapA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00665">
        <property type="entry name" value="DHDPS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00666">
        <property type="entry name" value="DHDPS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 9" id="KW-0220">Diaminopimelate biosynthesis</keyword>
    <keyword evidence="9 10" id="KW-0456">Lyase</keyword>
    <keyword evidence="7 9" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 9" id="KW-0704">Schiff base</keyword>
    <feature type="active site" description="Proton donor/acceptor" evidence="9">
        <location>
            <position position="132"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with substrate" evidence="9">
        <location>
            <position position="160"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="44"/>
        </location>
        <ligand>
            <name>pyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="200"/>
        </location>
        <ligand>
            <name>pyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
        </ligand>
    </feature>
    <feature type="site" description="Part of a proton relay during catalysis" evidence="9">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <feature type="site" description="Part of a proton relay during catalysis" evidence="9">
        <location>
            <position position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012086"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR001365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO20279.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="289" mass="31294" checksum="6B382D7D4F1CD848" modified="2015-11-11" version="1">MFNGSYVALVTPFKNGQVDYQKLKELVEFHVKNGTQGIVPCGTTGESATLSFDEHEQMIGEVVTMVAGRIQVLAGAGSNNTMEALQLTKQAKKVGADGALLITPYYNKPTQEGLYRHYKLIAEAVDIPIVLYNVPSRTGISILPETVARLAEIKNIVGIKEASGSIDQTTQILQLCNITVLSGDDSLTLPIMSVGGKGVISVVANVVPADTAALTRHCLEGNFEEARKCHHKLFPLCKSMFIETNPIPVKTAMRILGRINGELRLPLCDMTKEHESQLTGALKKYGLVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0S0</accession>
    <name>A0A0M2V0S0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Putative Na+/H+ antiporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_00956</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000116">
        <property type="protein sequence ID" value="KKO20324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20324">
        <property type="protein sequence ID" value="KKO20324"/>
        <property type="gene ID" value="BROFUL_00956"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015299">
        <property type="term" value="F:solute:proton antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006812">
        <property type="term" value="P:cation transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006153">
        <property type="entry name" value="Cation/H_exchanger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038770">
        <property type="entry name" value="Na+/solute_symporter_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00999">
        <property type="entry name" value="Na_H_Exchanger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="15"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="39"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="62"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="97"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="120"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="152"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="184"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="214"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="295"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="339"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="365"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="domain" description="Na_H_Exchanger" evidence="5">
        <location>
            <begin position="22"/>
            <end position="375"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00999"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="406" mass="45171" checksum="7F0584ABC063E272" modified="2015-11-11" version="1">MKLSIAWKMIVNESVLSLGISLIALFFAGFLATKVNQSLTAVFIVVGMILQNFFPLTIITEFIATLGIIFMLFMFGLEFSVGSLVHNQRKIFSSGMYDLLFNFPPGLLLGWILGYDLIHALLFAGVVYVTSSVIVAKSIIDLKRSANPETEYVLNVLIFEDMFIASFLACIVGVVNYGHIDARGIFFVILKTSAFFLFFIMLSRTTKKYIDKVVDIEHTELFVILILSIIVLSAGAASRIGLSEAIGAFLAGLLLSETKQRHRISDAIKPFQQFSTAIFFVAFGMSIDYKHFGSMIPIGIFIFIVSSFSKVFGGYFIGKKYELSKRACLRLGFSLIPRGEFSIILAGAIAINSAAPYHLKSLTGVYVLLSAVFGSILMKEADWFIKRFIEKRDKEVKETDNTPVLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1X6</accession>
    <name>A0A0M2V1X6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00132</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000016">
        <property type="protein sequence ID" value="KKO21131.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21131">
        <property type="protein sequence ID" value="KKO21131"/>
        <property type="gene ID" value="BROFUL_00132"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21131.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="115" mass="12905" checksum="71CC522D7FB886B0" modified="2015-11-11" version="1">MYTPEEQKYINKLISILRGNNDDKKIAVKTTLDALKRDIWTIRCGELKRHDKKVAMEVRPGHTSIVYRSIISTFARGTMTVEPSENPISSIRTVASVSMVCGEKGSALILPIFPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2I9</accession>
    <name>A0A0M2V2I9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00352</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000044">
        <property type="protein sequence ID" value="KKO20919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20919">
        <property type="protein sequence ID" value="KKO20919"/>
        <property type="gene ID" value="BROFUL_00352"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009363">
        <property type="entry name" value="Phage_Mu_Gp16"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06252">
        <property type="entry name" value="DUF1018"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="154" mass="17046" checksum="0FF447C6604A19F4" modified="2015-11-11" version="1">MVKGITQAQKKKIWTKAHEIGMAEEQVRDLVRWVSGQESTKELTKSRGIELIDILEGKVRVPANNPLNPPFVRGTILAPKKGSKVIGRFVPLATPDQLSLIENLKKEAGWDDEHLMNFVRKIFNKDTLAKLGGNEAGVLISVLKRAKGKLVTGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V378</accession>
    <name>A0A0M2V378_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Chaperone protein DnaJ</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00160</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000017">
        <property type="protein sequence ID" value="KKO21114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21114">
        <property type="protein sequence ID" value="KKO21114"/>
        <property type="gene ID" value="BROFUL_00160"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.198"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002939">
        <property type="entry name" value="DnaJ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008971">
        <property type="entry name" value="HSP40/DnaJ_pept-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01556">
        <property type="entry name" value="DnaJ_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49493">
        <property type="entry name" value="SSF49493"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DnaJ_C" evidence="1">
        <location>
            <begin position="2"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="141" mass="15677" checksum="46C3A0836D25F729" modified="2015-11-11" version="1">MTGQGESGENGAPSGDLYCDIHVKPHPIFKRQGDDVLCEVPVSFAQAALGCTIEVPTLAGTIIQVKIPKGTQNNEVIPIRGEGFPNLHGYRKGNLLVQVIVEVPTKMTSRQEELLREFAELEKKNISPRQKKFFEKMKDLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V3I8</accession>
    <name>A0A0M2V3I8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00063</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000007">
        <property type="protein sequence ID" value="KKO21224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21224">
        <property type="protein sequence ID" value="KKO21224"/>
        <property type="gene ID" value="BROFUL_00063"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="151" mass="17540" checksum="2B34ADE1B4CF6C01" modified="2015-11-11" version="1">MGCKNFMKKKIFTGQENFFKNLHTTINFYFLFMHKTIFCKKTMQGILMIWFLLCILPGDCLLLGCVEGDVLHCAEKEAAVISHQDVLDSLPMDDQHCSHCCLLCTHNLVMGLLQKSFLFLNRSPRWVQTLHVNHFKSIFQTIIYHPPRFAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UP05</accession>
    <name>A0A0M2UP05_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03449</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000315">
        <property type="protein sequence ID" value="KKO17873.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17873">
        <property type="protein sequence ID" value="KKO17873"/>
        <property type="gene ID" value="BROFUL_03449"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17873.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="341" mass="39156" checksum="59BB6042EAA044BB" modified="2015-11-11" version="1">MKNMKLGASYFGSRILRHVREDMKKMVDDGCNFVVHTMSEHDIAYHAGTMADIVKASQEAGLEVFLDPWGFGRVFGGESFSTFVKTYPHCRQQLNFTEGEIKVYKACLNSKTFRDTMAAWIELAAKTGAEGVFWDEPHLFFGEFTPLFGGRKRDIWGCACGVCADIFKQQLQYEMPVDFTDDVKAFRQATIVNFLEYLASLASKKGLKNAVCLFPTTDPRYGVYDWEKVAMIKSMDVFGSDPYWYAYKRDVTEFVRSVSHEVHDLSKKYAKEPQIWIQGYRVPAQREEEIATAIDVAYESGVHNIATWSFEGADCMTYVRSDRPDIVWQHVRSSYLKYKNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPV8</accession>
    <name>A0A0M2UPV8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_03172</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18123">
        <property type="protein sequence ID" value="KKO18123"/>
        <property type="gene ID" value="BROFUL_03172"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009403">
        <property type="term" value="P:toxin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003825">
        <property type="entry name" value="Colicin-V_CvpA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02674">
        <property type="entry name" value="Colicin_V"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="31"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="54"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="99"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="168"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="188" mass="20377" checksum="EF6E1D449CB97775" modified="2015-11-11" version="1">MHWIDYTIFGVLFFAMVMGITSGPLLQLLRIGSLFISFFAALLFYDILSNFLKGIFTVSTAGLLGYLIIFGIACIATYLITDLIKKLIGKGEMGMGARLLGGILGILKGLVFSGVIIHGVLSFCSTTTCNTVHTSKVATHIGKGMQKIIAVIPENISKKIRDYADSIRKGDAQEDSGQDKNKDFKSSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPW6</accession>
    <name>A0A0M2UPW6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03388</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17937">
        <property type="protein sequence ID" value="KKO17937"/>
        <property type="gene ID" value="BROFUL_03388"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="119" mass="13820" checksum="4134F0B2A5A11B6D" modified="2015-11-11" version="1">MRKRFEQQRKLGVISISEVKLPLKSRDELPPILRALQHIYATPELNEEVFRILEEKALEGKKKTRRYGMELWHILVLSAVGLGLDADYDRLDDFVSHQRILGVETTCGEGKRFSRQSIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPX8</accession>
    <name>A0A0M2UPX8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Serine/threonine protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03192</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18143.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18143">
        <property type="protein sequence ID" value="KKO18143"/>
        <property type="gene ID" value="BROFUL_03192"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3935"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006468">
        <property type="term" value="P:protein phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18143.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="268" mass="31021" checksum="9AE6B17E49080ACC" modified="2015-11-11" version="1">MYRINKYHFNEFKCQASLHKSNYAVLINVSDTGIKYSPDFDFSEEYYILKELSHPQIPITSDFGEGELFRDDKFLIKQNFIVLQHVHGYDLVDYFAEKDIENAGTLDEVIKSFISVCDPLQHVHNKHYIHCDLKPGHLILNQKTGLVHLIDFELAIKRGGIIKGISKEYASPEQLQMLNYLKDLPRKVHYETISSTIRLDGRTDLYSLGLIFYQIVTKKLWQVEKASPCKINSHIPQKLEEVLHSLLEVNPSQRIASAEEVKRVLMSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ51</accession>
    <name>A0A0M2UQ51_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Siroheme decarboxylase</fullName>
            <ecNumber evidence="5">4.1.1.111</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_03290</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>2 H(+) + siroheme = 12,18-didecarboxysiroheme + 2 CO2</text>
            <dbReference type="Rhea" id="RHEA:19093"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:60052"/>
            <dbReference type="ChEBI" id="CHEBI:140497"/>
            <dbReference type="EC" id="4.1.1.111"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Porphyrin-containing compound metabolism.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the Ahb/Nir family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.111" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000301">
        <property type="protein sequence ID" value="KKO18012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18012">
        <property type="protein sequence ID" value="KKO18012"/>
        <property type="gene ID" value="BROFUL_03290"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00189"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000485">
        <property type="entry name" value="AsnC-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040523">
        <property type="entry name" value="AsnC_trans_reg2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019888">
        <property type="entry name" value="Tscrpt_reg_AsnC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019885">
        <property type="entry name" value="Tscrpt_reg_HTH_AsnC-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17805">
        <property type="entry name" value="AsnC_trans_reg2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13404">
        <property type="entry name" value="HTH_AsnC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00344">
        <property type="entry name" value="HTH_ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00519">
        <property type="entry name" value="HTH_ASNC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH asnC-type" evidence="6">
        <location>
            <begin position="7"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="domain" description="AsnC_trans_reg2" evidence="7">
        <location>
            <begin position="65"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023444"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023457"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF13404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF17805"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="156" mass="17862" checksum="B8F25993316180D0" modified="2015-11-11" version="1">MTTKKEDIDVKLIKHIQEGLPVTKTPYKDIGQAMGMTEDEVIQRLKKLLEEGKIRRLAASIAHRKIGINANAMCVWKVPGDRVDDVGKIMAGFEEVTHCYERPVYPDWEYNVFTMIHGYTDAECEAVIQAIKEKTGLDDYVVLYSEREFKKVGVRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ78</accession>
    <name>A0A0M2UQ78_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03084</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000285">
        <property type="protein sequence ID" value="KKO18238.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18238">
        <property type="protein sequence ID" value="KKO18238"/>
        <property type="gene ID" value="BROFUL_03084"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021342">
        <property type="entry name" value="DUF2959"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11172">
        <property type="entry name" value="DUF2959"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18238.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="233" mass="26254" checksum="09168E96AEA502CE" modified="2015-11-11" version="1">MKHIYTGTKKTKQRKRTRGWNSVGFVAFIMVSWGAQMLFSGCATTGPEKKQKAVSSIEGFHKELMKNLNQITETLTALNQIETPEKGDLYKPYQNFVKQLNRTTDNSLSMDRHATAMATKGREYFDTWEKELSNIMNAELRTKGAERRGELSATFERITRLAQEVQMTYQPFLSDLTDVKTALGNDLTPRGMAAMKPYISKANKDGEIVMVKLQALADEVDRATNALSSRVGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQF4</accession>
    <name>A0A0M2UQF4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CRISPR-associated endonuclease Cas9</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">cas9_1</name>
        <name evidence="2" type="ORF">BROFUL_03438</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000313">
        <property type="protein sequence ID" value="KKO17890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17890">
        <property type="protein sequence ID" value="KKO17890"/>
        <property type="gene ID" value="BROFUL_03438"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040619">
        <property type="entry name" value="Cas9_alpha-helical_lobe"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18470">
        <property type="entry name" value="Cas9_a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cas9_a" evidence="1">
        <location>
            <begin position="271"/>
            <end position="367"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO17890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="397" mass="45950" checksum="ACA44399219483DF" modified="2015-11-11" version="1">MEKYILGLDVGTNSIGSAIVRCDGNKQPVGLIALHNRIFQEMVEADTRVPKNKKRREKRGARKLVRRYKMRRTKLVQLLSENKMLPDSMQDMKNWEGVLNGIGDPFLLRAKGANEPLSPYEFGRALMHLLRRRGYRSNRGAKYIELIKHPKVVEFSQAELQDNDEIEGEDKAKADDRRKVLRGISRLYEAMKANNCITLGQFIYKTSSERNHEPRRITKLTLNDTTLYANRKLYEDEFNFLWDKQNQFLSLSDGIKASIHDAIFSQRPMKIQKNLVGKCSLEIRKPRAAKVTLEAQEFRMLQEINDLKIKLPYTPFSPLTPEQRATLLNAIDNIKNLNEKGQLPWADVKKVLDLDKKAKFNLQETSKNGLSGNRTNLVCRHINYKLYIVDNFNYIAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQK3</accession>
    <name>A0A0M2UQK3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Phosphoribosylformylglycinamidine synthase subunit PurL</fullName>
            <shortName evidence="8">FGAM synthase</shortName>
            <ecNumber evidence="8">6.3.5.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Formylglycinamide ribonucleotide amidotransferase subunit II</fullName>
            <shortName evidence="8">FGAR amidotransferase II</shortName>
            <shortName evidence="8">FGAR-AT II</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Glutamine amidotransferase PurL</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Phosphoribosylformylglycinamidine synthase subunit II</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">purL</name>
        <name evidence="12" type="ORF">BROFUL_03196</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>ATP + H2O + L-glutamine + N(2)-formyl-N(1)-(5-phospho-beta-D-ribosyl)glycinamide = 2-formamido-N(1)-(5-O-phospho-beta-D-ribosyl)acetamidine + ADP + H(+) + L-glutamate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:17129"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:147286"/>
            <dbReference type="ChEBI" id="CHEBI:147287"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.5.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="8">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole from N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Monomer. Part of the FGAM synthase complex composed of 1 PurL, 1 PurQ and 2 PurS subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the FGAMS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.3" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18147">
        <property type="protein sequence ID" value="KKO18147"/>
        <property type="gene ID" value="BROFUL_03196"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3941"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00128"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004642">
        <property type="term" value="F:phosphoribosylformylglycinamidine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1280.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.650.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00420">
        <property type="entry name" value="PurL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010074">
        <property type="entry name" value="PRibForGlyAmidine_synth_PurL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041609">
        <property type="entry name" value="PurL_linker"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010918">
        <property type="entry name" value="PurM-like_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036676">
        <property type="entry name" value="PurM-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016188">
        <property type="entry name" value="PurM-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036921">
        <property type="entry name" value="PurM-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003850">
        <property type="entry name" value="PurS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036604">
        <property type="entry name" value="PurS-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43555">
        <property type="entry name" value="PTHR43555"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00586">
        <property type="entry name" value="AIRS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02769">
        <property type="entry name" value="AIRS_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18072">
        <property type="entry name" value="FGAR-AT_linker"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02700">
        <property type="entry name" value="PurS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55326">
        <property type="entry name" value="SSF55326"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56042">
        <property type="entry name" value="SSF56042"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82697">
        <property type="entry name" value="SSF82697"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01736">
        <property type="entry name" value="FGAM_synth_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 8" id="KW-0436">Ligase</keyword>
    <keyword evidence="7 8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 8" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FGAR-AT_linker" evidence="11">
        <location>
            <begin position="186"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="domain" description="AIRS" evidence="9">
        <location>
            <begin position="275"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="domain" description="AIRS_C" evidence="10">
        <location>
            <begin position="410"/>
            <end position="561"/>
        </location>
    </feature>
    <feature type="domain" description="AIRS" evidence="9">
        <location>
            <begin position="666"/>
            <end position="764"/>
        </location>
    </feature>
    <feature type="domain" description="AIRS_C" evidence="10">
        <location>
            <begin position="788"/>
            <end position="929"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="231"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="8">
        <location>
            <position position="294"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="290"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="292"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="315"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="316"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="449"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="477"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="709"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="746"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="749"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00420"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF18072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO18147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="958" mass="105570" checksum="5ED6FFC3B461D554" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQQ8</accession>
    <name>A0A0M2UQQ8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03100</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000286">
        <property type="protein sequence ID" value="KKO18202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18202">
        <property type="protein sequence ID" value="KKO18202"/>
        <property type="gene ID" value="BROFUL_03100"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="101" mass="11582" checksum="A8E03E6800374C1A" modified="2015-11-11" version="1">MAEKNEIGTITLKIDQQQLRKIATSGRLEKFIEKATELFKRDLKAELVKESVSSSETALFLYDDEFGTGPRPPHWHNIARIELLTSRLEVLEQSVLKATRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR04</accession>
    <name>A0A0M2UR04_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02788</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in DNA recombination.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the RmuC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000264">
        <property type="protein sequence ID" value="KKO18518.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18518">
        <property type="protein sequence ID" value="KKO18518"/>
        <property type="gene ID" value="BROFUL_02788"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3448"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003798">
        <property type="entry name" value="DNA_recombination_RmuC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30563">
        <property type="entry name" value="PTHR30563"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02646">
        <property type="entry name" value="RmuC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="119"/>
            <end position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18518.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="461" mass="51560" checksum="AD6836A2F7F4C9FA" modified="2015-11-11" version="1">MEMHWIVISMIASVLTGAVITWLLCRIRITTLTEQGATTQQELLNTRAVLNQQNGTVSHLNQVVVRLETTLEHERKMAHEKLGVLNDATLRLGDAFKVLSSEALRNNNQSFLELAKITLEKYQTEAKGDLEQKQKAVEQLVTPIRQSLEKVDNQIQELEKARQHAYGSLTEQVKSLIYTQEKLQSETNNLVKALRTPAVRGTWGEIQLKRVVEIAGMLEYCDFYQQPSATTEDGRLRPDLLVRLPGGKNIVVDAKTPLQSYLDAFEAGNDELRFSKLHAHAQQIRTHMAKLSAKSYWEQFRPTPEFVVLFLPGETFFSAALELDPALIEEGAKQQVILATPTTLIALLRAVYYGWRQEQMSENTKKIGELGRELHERIATMVEHLTKVGGSLGKAVEAFNAAVASFEGRVLPAVRKFQALGAGSKKEIEELTPLDKGARILMEVQDEQGATLPASQKPSGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR53</accession>
    <name>A0A0M2UR53_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Ca2+/Na+ antiporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02736</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000254">
        <property type="protein sequence ID" value="KKO18568.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18568">
        <property type="protein sequence ID" value="KKO18568"/>
        <property type="gene ID" value="BROFUL_02736"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3383"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1420.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004481">
        <property type="entry name" value="K/Na/Ca-exchanger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004837">
        <property type="entry name" value="NaCa_Exmemb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044880">
        <property type="entry name" value="NCX_ion-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10846">
        <property type="entry name" value="PTHR10846"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01699">
        <property type="entry name" value="Na_Ca_ex"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00367">
        <property type="entry name" value="TIGR00367"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="32"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="72"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="108"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="130"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="168"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="201"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="236"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="264"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="domain" description="Na_Ca_ex" evidence="6">
        <location>
            <begin position="8"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="domain" description="Na_Ca_ex" evidence="6">
        <location>
            <begin position="169"/>
            <end position="306"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18568.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="307" mass="32986" checksum="8C7F41ABAAAFAD61" modified="2015-11-11" version="1">MEIFINLLALTASLGVLVFLGEKLILSAQRLARAFGVSSAVIGLTVLAYGTSLPEFVVSSMAAVRQSSDLSVSNIVGSNIYNIAFILGVASIISPLSIKETIFAKRDGLVMLFAVIIICLFAYLGKMGRLTGIAMVAIIAGYTYTIIRHDRVHRKTGPDKNLSKIKEAVVVVLLLAGVLISGYFTVDYAVKLARSAGVTEWLIGATIVAAGTSLPETIVSILAARKGEYAMSIGNIVGSNIFNILWILGFASILNPLTINFQKIYPDLIFLAIITLLLYAALRKGRLTKGEGLLYIALYIGYISYLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URC3</accession>
    <name>A0A0M2URC3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02878</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000271">
        <property type="protein sequence ID" value="KKO18422.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18422">
        <property type="protein sequence ID" value="KKO18422"/>
        <property type="gene ID" value="BROFUL_02878"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18422.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="89" mass="10305" checksum="8763C2DFBB015267" modified="2015-11-11" version="1" fragment="single">KCMVAVIARPFPKQSPRFHKGNLVAAVPRYVYSLLCQKCQNIFYSTLYGINNVMKITGIKKETKGAYEYAYCTHIQEWTPLRRCAIKEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URE6</accession>
    <name>A0A0M2URE6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02876</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000270">
        <property type="protein sequence ID" value="KKO18442.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18442">
        <property type="protein sequence ID" value="KKO18442"/>
        <property type="gene ID" value="BROFUL_02876"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001440">
        <property type="entry name" value="TPR_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00515">
        <property type="entry name" value="TPR_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="5"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="1 2" id="KW-0802">TPR repeat</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005643969" evidence="3">
        <location>
            <begin position="24"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="29"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="63"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="97"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="136"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="2">
        <location>
            <begin position="170"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18442.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="241" mass="27581" checksum="8E10F5AF4403B26D" modified="2015-11-11" version="1">MFMQYRNIQSITWVLCLTFCVVAGCGNKASHHNNEGIVLYNKGKYTEAIGEFKKALELNPNLYDAHYHLGIAYYAKGMIDESVTALKNAIEVSPNEPKAHYNIAFAYVAKEDVAKALVEYQKAIELFAARKDKKEADAYLYLAVAYSLIERHDEAIAACQKAIEINPEMEDAHYLLGVCYYKKEMIEAAIAKFKKVVQLNPKSEKAHNLLFTIYDKLGKTEDAVEEDRILKQIERERREQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URK1</accession>
    <name>A0A0M2URK1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">O-linked GlcNAc transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02992</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18265">
        <property type="protein sequence ID" value="KKO18265"/>
        <property type="gene ID" value="BROFUL_02992"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13174">
        <property type="entry name" value="TPR_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="272"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="307"/>
            <end position="340"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="396" mass="46231" checksum="16067DB26BD0217C" modified="2015-11-11" version="1">MWLIMRLKKYCQFLAILFMLSISFQSIISGDEKKIRVVIFPFHYNGDSKDLFLGIDDVMRSELIRSGYCEVTEQERTYEFIQEAVLSNIIKIENADMRNMLTKANIVDLFAKVNPKVLIQVAEKTNADFALRGTLNQFGSTLRTNIEIVQVKAKETIRVLVSECESIEKIPEMIEHLSQQIIEVCKNVNVQREIDYIQRNYQQGNITYEETTARLKNLSSEIPGSFLIHSTLFSHYFGHQEMRDYLIEEGKVLIKLFAAHEEDIRCLSFLGVDPFFEMANIYYEMGMFDDAINVYNRLIPIYPMNQIKYSKHLGELYKLKGKDELAIEAFSRVLSMDQTDFETRLNLASLYESNGDILRALEQYQHSLKYTKNISENSRVKEKIKRLQLLKDVHKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URP2</accession>
    <name>A0A0M2URP2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Type I site-specific deoxyribonuclease</fullName>
            <ecNumber evidence="3">3.1.21.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">BROFUL_02760</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Endonucleolytic cleavage of DNA to give random double-stranded fragments with terminal 5'-phosphates, ATP is simultaneously hydrolyzed.</text>
            <dbReference type="EC" id="3.1.21.3"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the HsdR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.21.3" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000260">
        <property type="protein sequence ID" value="KKO18537.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18537">
        <property type="protein sequence ID" value="KKO18537"/>
        <property type="gene ID" value="BROFUL_02760"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009035">
        <property type="term" value="F:type I site-specific deoxyribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007409">
        <property type="entry name" value="Restrct_endonuc_type1_HsdR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040980">
        <property type="entry name" value="SWI2_SNF2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04313">
        <property type="entry name" value="HSDR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18766">
        <property type="entry name" value="SWI2_SNF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="12" id="KW-0347">Helicase</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0680">Restriction system</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="11">
        <location>
            <begin position="289"/>
            <end position="487"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="563"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012654"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO18537.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="563" mass="64217" checksum="439DAA2A21375264" modified="2015-11-11" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URU3</accession>
    <name>A0A0M2URU3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acetyl-CoA synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02730</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000253">
        <property type="protein sequence ID" value="KKO18582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18582">
        <property type="protein sequence ID" value="KKO18582"/>
        <property type="gene ID" value="BROFUL_02730"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3377"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="59"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="483"/>
            <end position="561"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="584" mass="66062" checksum="2DB2F8D27F352C76" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USF7</accession>
    <name>A0A0M2USF7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02292</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO18998.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18998">
        <property type="protein sequence ID" value="KKO18998"/>
        <property type="gene ID" value="BROFUL_02292"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644044" evidence="1">
        <location>
            <begin position="28"/>
            <end position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18998.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="263" mass="30413" checksum="A14B0C38EC8394F2" modified="2015-11-11" version="1">MNIRRNCILLVWFVAIVIFSVTTISNAEESPAHVAQEDLYEKAMVLKEDGKGDEAINMFNKFMDTNKDELKRTDAMLEQCMIMKGMKTPTWKTKAREAQQKVKILYRTNYMNPEYWLVYAKFAAIVNEERDVYGAFKKAFYYKPDYPEGYIVKGDLYSYLAKNTDPSESTASTAIGYEEAHVSKENSVRYQKGKEAKESYEIALRNSTLDNDKKASIHYKIGELEMNILLNKEEAIKNWKKTVELSRDSMYGKKSAELLSKNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USQ1</accession>
    <name>A0A0M2USQ1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Diadenylate cyclase</fullName>
            <shortName evidence="10">DAC</shortName>
            <ecNumber evidence="10">2.7.7.85</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Cyclic-di-AMP synthase</fullName>
            <shortName evidence="10">c-di-AMP synthase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">dacA</name>
        <name evidence="12" type="ORF">BROFUL_03304</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>2 ATP = 3',3'-c-di-AMP + 2 diphosphate</text>
            <dbReference type="Rhea" id="RHEA:35655"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:71500"/>
            <dbReference type="EC" id="2.7.7.85"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="10">Probably a homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the adenylate cyclase family. DacA/CdaA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.85" evidence="10"/>
    <dbReference type="EMBL" id="LAQJ01000301">
        <property type="protein sequence ID" value="KKO18026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18026">
        <property type="protein sequence ID" value="KKO18026"/>
        <property type="gene ID" value="BROFUL_03304"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4072"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004016">
        <property type="term" value="F:adenylate cyclase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106408">
        <property type="term" value="F:diadenylate cyclase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006171">
        <property type="term" value="P:cAMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019932">
        <property type="term" value="P:second-messenger-mediated signaling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1700.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01499">
        <property type="entry name" value="DacA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014046">
        <property type="entry name" value="C-di-AMP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034701">
        <property type="entry name" value="CdaA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036888">
        <property type="entry name" value="DNA_integrity_DisA_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003390">
        <property type="entry name" value="DNA_integrity_scan_DisA_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02457">
        <property type="entry name" value="DAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004793">
        <property type="entry name" value="UCP004793"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143597">
        <property type="entry name" value="SSF143597"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00159">
        <property type="entry name" value="TIGR00159"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51794">
        <property type="entry name" value="DAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 10" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 10" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="30"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="56"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="domain" description="DAC" evidence="11">
        <location>
            <begin position="78"/>
            <end position="235"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000877"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01499"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51794"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO18026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="259" mass="28799" checksum="931F428EADFDDA14" modified="2015-11-11" version="1">MIGRSLGEIFLIFMVVYVVLRIMQGTSGTSILRGLAFIIVLISIGVLFFVRKLQLFTIDWLITEFVPVFIIPIIILFQPEFRRALLRLGQNPVFSMFLKSEQQEMTYEIIQAVEYLSKNRIGALIAIERDIGLGNFVETGTKLHADVSRDLLNTIFWPGSPLHDGAVIIQEQKISAAGCLLPLTEKTELSRSLGTRHRAGIGLTEETDALVIIVSEETGTISTGFKGTLNQGVDEKGLKKILDDLSTERFSVAKSTRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USS2</accession>
    <name>A0A0M2USS2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">PMT_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_02606</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18655">
        <property type="protein sequence ID" value="KKO18655"/>
        <property type="gene ID" value="BROFUL_02606"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038731">
        <property type="entry name" value="RgtA/B/C-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13231">
        <property type="entry name" value="PMT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="82"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="108"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="135"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="157"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="178"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="207"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="315"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="342"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="373"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="407"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="domain" description="PMT_2" evidence="9">
        <location>
            <begin position="63"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF13231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO18655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="555" mass="63738" checksum="C6E8EA099B163DEF" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UST1</accession>
    <name>A0A0M2UST1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ADP-heptose-LPS-heptosyl transferase II</fullName>
            <ecNumber evidence="2">2.4.1.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">rfaF</name>
        <name evidence="2" type="ORF">BROFUL_02616</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.-" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18665">
        <property type="protein sequence ID" value="KKO18665"/>
        <property type="gene ID" value="BROFUL_02616"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03789">
        <property type="entry name" value="GT9_LPS_heptosyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002201">
        <property type="entry name" value="Glyco_trans_9"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01075">
        <property type="entry name" value="Glyco_transf_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="314" mass="35848" checksum="5787E1A5DDF19258" modified="2015-11-11" version="1">MHKEKVLIIKLGYSETLDGEIGKITSLGDVLRSTVLLHLYKNAHVTWLVDEKAFPLLKGNPFIRRILSYDLSSVLQLQSERFDTVINLEKVPGLCAFSDSLNAWRRYGFRFDPENGVALAYDGSQHVLEICMDPEYKKKTRKFWEETLFEMVGAKWQGEGCILGYQTKSSTAFDIGFNYDVGKKWPNKAWPMEYWKELERLIGNKYTVSWQQGLKNIEEYFEWISSCNLFITNDSLGLHIAGALNKKIIALFGPTMASEIYVPNGIKLLPTIDYPCIPCLSPRCKQSTLCMHYIEPNVVYDMIEKVVTGSVSPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTH4</accession>
    <name>A0A0M2UTH4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_02373</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000227">
        <property type="protein sequence ID" value="KKO18915.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18915">
        <property type="protein sequence ID" value="KKO18915"/>
        <property type="gene ID" value="BROFUL_02373"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006158">
        <property type="entry name" value="Cobalamin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034466">
        <property type="entry name" value="Methyltransferase_Class_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02310">
        <property type="entry name" value="B12-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01123">
        <property type="entry name" value="methyltransferase_(Class_B)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="B12-binding" evidence="6">
        <location>
            <begin position="11"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="7">
        <location>
            <begin position="182"/>
            <end position="402"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18915.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="452" mass="52179" checksum="CF9D43FFDB3914E5" modified="2015-11-11" version="1">MKVLIVQPATNPKVLGGDLIFKTEPLWGEYLAAAVQENHDVEILDLRMGGNFHETLERFQPNVIAMTAFTVDVNSVKKLSKEAKGLNPKILTVVGGYHASLAPHDFDDQNIDVIVIGEGIFTFKDVVESLEKGSNFRSIPGIVFRSENTLIKNEPRPWPHLDSYNFPNRTLTALHRKEYFDKWMKPLATIRGSYSCPFRCDFCCLWPMTNSKYLTRTPESFVAELKTIQEENIFFSDDEALIDIERMRKIADLIKREGIKKQYFFMTRSTSIRKKPDIIEKWAEIGLKRVLLGLESPRERDLVDFKKDATIDDNNQAISILKRNNIEINSMFVIAQDYERKDFENLDGYVKSQGLEMPIFCILTPFPGTPLYEKMKKQIIVEDYDLWDLLHTVLPTTKLSLKEFYLEFAKLYGGLEPLYRGILSHRKSVSAEDTVENIRRVFRAMRKKEGAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTL2</accession>
    <name>A0A0M2UTL2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Molybdopterin biosynthesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01870</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000194">
        <property type="protein sequence ID" value="KKO19408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19408">
        <property type="protein sequence ID" value="KKO19408"/>
        <property type="gene ID" value="BROFUL_01870"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2334"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008641">
        <property type="term" value="F:ubiquitin-like modifier activating enzyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045886">
        <property type="entry name" value="ThiF/MoeB/HesA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000594">
        <property type="entry name" value="ThiF_NAD_FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035985">
        <property type="entry name" value="Ubiquitin-activating_enz"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10953">
        <property type="entry name" value="PTHR10953"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00899">
        <property type="entry name" value="ThiF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69572">
        <property type="entry name" value="SSF69572"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ThiF" evidence="1">
        <location>
            <begin position="13"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="234" mass="25312" checksum="56FB6A07A9BC2AA5" modified="2015-11-11" version="1">MSLSFTEEQIKRYSRHIILPEVGGKGQQKLFSAKVFLVGAGGLGSPAAFYLAAAGIGKIGIADNDCVDHSNLQRQILHSTNDVGRSKALSAKETLEALNPDIEVVPYTDRLNSGNIMDIIKDYDVILDGTDNFPTRYLVNDACVFLKKPLSHGSIFRFEGQVTTIIPFEVPVTVVSTKSLPPLASCFVPGGGSPWGIARCDWLYSGNRGSKADSGERRGFEGKIAHVRFPVNGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTU4</accession>
    <name>A0A0M2UTU4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02912</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18406.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18406">
        <property type="protein sequence ID" value="KKO18406"/>
        <property type="gene ID" value="BROFUL_02912"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18406.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="51" mass="5830" checksum="97E30D902DF16C3C" modified="2015-11-11" version="1">MEKIIQMVKKPAEGKFTMSPERQRRRDVFAISVAAQRGTSLLSLSLIFCLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTV2</accession>
    <name>A0A0M2UTV2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">N-acetyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02042</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19242.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19242">
        <property type="protein sequence ID" value="KKO19242"/>
        <property type="gene ID" value="BROFUL_02042"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="12"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19242.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="174" mass="20010" checksum="F83317F6D26595B6" modified="2015-11-11" version="1">MTISKPHNRPTFCLRPAETRDAAPLLELEASCFTRTEEMFNRRQIQRLITNPRAIVVVAERKGVALGWAAGLLRRYHQRYSSGRLYAVAVHPDEQGQRIGQKLTDHILHALAIHGAERIFLEVHAKNQKAINLYRKLGFTEQEYLADYYGTHHHGIRMMRSTTTVRHPRSMGNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU33</accession>
    <name>A0A0M2UU33_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01717</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000177">
        <property type="protein sequence ID" value="KKO19573.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19573">
        <property type="protein sequence ID" value="KKO19573"/>
        <property type="gene ID" value="BROFUL_01717"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.450.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038573">
        <property type="entry name" value="BrnT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007460">
        <property type="entry name" value="BrnT_toxin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04365">
        <property type="entry name" value="BrnT_toxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19573.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="90" mass="10216" checksum="D9F0207D35E38B04" modified="2015-11-11" version="1">MEFEWDPNKANANLKKHGISFHEASTVFGDPLALTFNDPDHSIGEHRFLPFGYSGMGQLMVVVHTERHGKTRIISARCATRQERKIYEGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU43</accession>
    <name>A0A0M2UU43_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02187</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000216">
        <property type="protein sequence ID" value="KKO19105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19105">
        <property type="protein sequence ID" value="KKO19105"/>
        <property type="gene ID" value="BROFUL_02187"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2727"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="439" mass="48688" checksum="43F3B3BA0B11281B" modified="2015-11-11" version="1">MANRKKVLIMGAAGRDFHNFNLCFRDNPAYEVIAFTAAQIPNIEGRRYPSSLAGKCYPRGIPIEPEQKLTSLIKLHAIDDVVFSYSDVSHEYVMHKASLVSASGAQFTLLGTRQTMLKSSKPVVAVCAVRTGSGKSPVSRRVCEILKGMGKKVVVVRHPMPYGDLSRQRLQRFASYEDCQKHDCTIEEIEEYEPHLEQHTVVYAGVDYAAILAEAEKEADIIVWDGGNNDTSFYVPDVYITLVDPHRPGHELTYYPGETNLLLADIVVISKEDTAKPENVRLLKEHMQQSNPNAAVIDAALPVTVENAELIRGKRALVIEDGPTLTHGGMAFGAGVLAAQQCQAGEIVDPRPYATGSIAGIFEKYPHISNLLPAMGYGHAQMEELRETIQRTPCDVVILGTPVDLRKIISIDKPTDRVRYHFQELSKPTLKELIEARLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU84</accession>
    <name>A0A0M2UU84_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Chromosomal replication initiator protein DnaA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_03267</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the DnaA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000299">
        <property type="protein sequence ID" value="KKO18044.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18044">
        <property type="protein sequence ID" value="KKO18044"/>
        <property type="gene ID" value="BROFUL_03267"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003688">
        <property type="term" value="F:DNA replication origin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006270">
        <property type="term" value="P:DNA replication initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006275">
        <property type="term" value="P:regulation of DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1750.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001957">
        <property type="entry name" value="Chromosome_initiator_DnaA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013317">
        <property type="entry name" value="DnaA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013159">
        <property type="entry name" value="DnaA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010921">
        <property type="entry name" value="Trp_repressor/repl_initiator"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30050:SF2">
        <property type="entry name" value="PTHR30050:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00308">
        <property type="entry name" value="Bac_DnaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08299">
        <property type="entry name" value="Bac_DnaA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00760">
        <property type="entry name" value="Bac_DnaA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48295">
        <property type="entry name" value="SSF48295"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0235">DNA replication</keyword>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_DnaA_C" evidence="8">
        <location>
            <begin position="89"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006583"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00760"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18044.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="133" mass="15186" checksum="6F353367D2CB2CD9" modified="2015-11-11" version="1">MSGMIVKIDKPDYATRLLILRSKAASFDVHFPEEVLEFIAERFEDNVREVESTLTTLSACAKFNEKNIDIHLASDVLGEFFLAEGKIVKINEIEAAILSYFNISRNELHSSKKIKSISFPRQICMYLIKTLLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUA9</accession>
    <name>A0A0M2UUA9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03240</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000296">
        <property type="protein sequence ID" value="KKO18069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18069">
        <property type="protein sequence ID" value="KKO18069"/>
        <property type="gene ID" value="BROFUL_03240"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025714">
        <property type="entry name" value="Methyltranfer_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13847">
        <property type="entry name" value="Methyltransf_31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltranfer_dom" evidence="1">
        <location>
            <begin position="51"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="244" mass="28237" checksum="8219CE291977E7B8" modified="2015-11-11" version="1">MKTDTLRETIYAFNNSDTVASYDADMDIWHPNRVKMASIVCEILPFDRTERVRFLDLGAGTGYLSHKLTETFPHATIIAVDAAALMIEKAKVRLHNHLERVTFHVSPFQELPKKLGTLAPVDAVVSSLALHHLYREEKLTLIRYVHSLLRPHGWFVNCDVFKTSDAVLEARFRRLHHQGYRRERVRSGTRRSPWMKFPQPCLIKRKKMATTCCSSWTTFRLLQRPDSARLNVSGRNTGKRYMAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUJ4</accession>
    <name>A0A0M2UUJ4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CRISPR-associated protein Cas5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">cas5</name>
        <name evidence="2" type="ORF">BROFUL_01999</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000202">
        <property type="protein sequence ID" value="KKO19285.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19285">
        <property type="protein sequence ID" value="KKO19285"/>
        <property type="gene ID" value="BROFUL_01999"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2490"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043571">
        <property type="term" value="P:maintenance of CRISPR repeat elements"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021124">
        <property type="entry name" value="CRISPR-assoc_prot_Cas5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013422">
        <property type="entry name" value="CRISPR-assoc_prot_Cas5_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010155">
        <property type="entry name" value="CRISPR-assoc_prot_Cas5d"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09704">
        <property type="entry name" value="Cas_Cas5d"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01876">
        <property type="entry name" value="cas_Cas5d"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02593">
        <property type="entry name" value="CRISPR_cas5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19285.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="257" mass="29820" checksum="C1B8E4E984B50E03" modified="2015-11-11" version="1">MISEPVRIRIKGRWACFTRPEFHVERVSYPVITPSAARGILEAILMKPIEKPQSDKRQDKSGFIWRILRIGIVKKGVPFSILRNELKTSKIAFSGKAGQPVNVSDTEESHTQRHSLILKDVEYLIEAVIEVPEEYIKNNGVISVVKYRKIFERRVKSGRCFHRPYLGCREYPCEFEWDENAQVDQTVNDDFGNMFHDFDFSPVWNHWGNKKERPEKWVINGKTIHPIAKAFYAKAEKGWITVSKIISDDGRKKVEAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUK2</accession>
    <name>A0A0M2UUK2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Putative polysaccharide biosynthesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_02617</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18666">
        <property type="protein sequence ID" value="KKO18666"/>
        <property type="gene ID" value="BROFUL_02617"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029303">
        <property type="entry name" value="Polysacc_synt_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14667">
        <property type="entry name" value="Polysacc_synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="32"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="70"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="114"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="150"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="177"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="216"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="255"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="297"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="337"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="363"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="389"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="422"/>
            <end position="447"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="453"/>
            <end position="472"/>
        </location>
    </feature>
    <feature type="domain" description="Polysacc_synt_C" evidence="7">
        <location>
            <begin position="334"/>
            <end position="473"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF14667"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="489" mass="54287" checksum="9A0EB17F8F91C2FA" modified="2015-11-11" version="1">MYNLIRRLVALPIGLVLPPITIQYLGVEGYGIWVLIQTLITYTSLMDMGFSPAITKYTAEYDAHKDHFKIVRVFNTVLVVYIFLCLIVFVIVYLGKGLIINFLIGPTKIPKETISFVLIISSLVFCCNMVFSAYLSFLNGLQRMGITNKIGSISSISNCLFSIVFLCVGGGLKSLAFAGGISGILSAVMYLRACKKIAPYLTFNPFLFRMKTIKEVWGFSSYGAMGNLVAMIHFQSDKLMISYFLGVSSLALYDVAHRLVFFVWGLSGSFITPIMPAISHVHAKYGVEKSKEVFQTIFSYTALMVCPLFFFVPVFADTLLLIWLGAGYENTISVLRILSLAYLFNILSGPGASVLTGMGFYKIPFYGGVITAVITLLLCPALIIKFGIFGSATGIMTAYGIGVFYLFLQLQKVFDSFSTARIFYHSLLFPAGMSIAIFLVTNTFITYFVLNKYFAFTLASLSLFIAYGLILFKDGRYRAVWKSLAALRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUM8</accession>
    <name>A0A0M2UUM8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Putative peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01544</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000160">
        <property type="protein sequence ID" value="KKO19743.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19743">
        <property type="protein sequence ID" value="KKO19743"/>
        <property type="gene ID" value="BROFUL_01544"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011249">
        <property type="entry name" value="Metalloenz_LuxS/M16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011765">
        <property type="entry name" value="Pept_M16_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007863">
        <property type="entry name" value="Peptidase_M16_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00675">
        <property type="entry name" value="Peptidase_M16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05193">
        <property type="entry name" value="Peptidase_M16_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63411">
        <property type="entry name" value="SSF63411"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644019" evidence="3">
        <location>
            <begin position="26"/>
            <end position="515"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M16" evidence="4">
        <location>
            <begin position="48"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M16_C" evidence="5">
        <location>
            <begin position="250"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="494"/>
            <end position="515"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="119"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00675"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF05193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19743.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="515" mass="58593" checksum="875F43E09C2F858A" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUM9</accession>
    <name>A0A0M2UUM9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Probable chemoreceptor glutamine deamidase CheD</fullName>
            <ecNumber evidence="3">3.5.1.44</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">cheD</name>
        <name evidence="4" type="ORF">BROFUL_01771</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>H2O + L-glutaminyl-[protein] = L-glutamyl-[protein] + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:16441"/>
            <dbReference type="Rhea" id="RHEA-COMP:10207"/>
            <dbReference type="Rhea" id="RHEA-COMP:10208"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29973"/>
            <dbReference type="ChEBI" id="CHEBI:30011"/>
            <dbReference type="EC" id="3.5.1.44"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the CheD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.44" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000184">
        <property type="protein sequence ID" value="KKO19522.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19522">
        <property type="protein sequence ID" value="KKO19522"/>
        <property type="gene ID" value="BROFUL_01771"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050568">
        <property type="term" value="F:protein-glutamine glutaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16352">
        <property type="entry name" value="CheD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01440">
        <property type="entry name" value="CheD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038592">
        <property type="entry name" value="CheD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005659">
        <property type="entry name" value="Chemorcpt_Glu_NH3ase_CheD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011324">
        <property type="entry name" value="Cytotoxic_necrot_fac-like_cat"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35147">
        <property type="entry name" value="PTHR35147"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03975">
        <property type="entry name" value="CheD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64438">
        <property type="entry name" value="SSF64438"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0145">Chemotaxis</keyword>
    <keyword evidence="2 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01440"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19522.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="159" mass="17178" checksum="B7010F8C747DEA80" modified="2015-11-11" version="1">MNDVQTAITVGVGDLKITQAPNELKTLLGSCIGVVLHDPINKIGGLLHVMLPKNNSNDLKITKYADTGLPFFIYQMVTHAGASRGALYAKIFGGAKMFETNGLFNIGESNEIEVRRILKEEGIRVVSAKTGGTKGYNILCDTETGEVTCRIFGEAIVIY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUR0</accession>
    <name>A0A0M2UUR0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Trifunctional nucleotide phosphoesterase protein YfkN</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">yfkN</name>
        <name evidence="4" type="ORF">BROFUL_01723</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 5'-nucleotidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000180">
        <property type="protein sequence ID" value="KKO19552.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19552">
        <property type="protein sequence ID" value="KKO19552"/>
        <property type="gene ID" value="BROFUL_01723"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009166">
        <property type="term" value="P:nucleotide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.780.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008334">
        <property type="entry name" value="5'-Nucleotdase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036907">
        <property type="entry name" value="5'-Nucleotdase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006179">
        <property type="entry name" value="5_nucleotidase/apyrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004843">
        <property type="entry name" value="Calcineurin-like_PHP_ApaH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11575">
        <property type="entry name" value="PTHR11575"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02872">
        <property type="entry name" value="5_nucleotid_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00149">
        <property type="entry name" value="Metallophos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01607">
        <property type="entry name" value="APYRASEFAMLY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55816">
        <property type="entry name" value="SSF55816"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005395731" evidence="1">
        <location>
            <begin position="24"/>
            <end position="559"/>
        </location>
    </feature>
    <feature type="domain" description="Metallophos" evidence="2">
        <location>
            <begin position="41"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="domain" description="5_nucleotid_C" evidence="3">
        <location>
            <begin position="345"/>
            <end position="511"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU362119"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19552.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="559" mass="62728" checksum="332384D1C991C0E3" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUU2</accession>
    <name>A0A0M2UUU2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01689</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000176">
        <property type="protein sequence ID" value="KKO19582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19582">
        <property type="protein sequence ID" value="KKO19582"/>
        <property type="gene ID" value="BROFUL_01689"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2094"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2020.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018841">
        <property type="entry name" value="DUF2442"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036782">
        <property type="entry name" value="NE0471-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10387">
        <property type="entry name" value="DUF2442"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143880">
        <property type="entry name" value="SSF143880"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="97" mass="11137" checksum="DCBBBE0E7BFEB103" modified="2015-11-11" version="1">MNPRVKAVKARNDYKLEITFSNNEVGMYDCSPLLNFGVFTELKDKIYFQQARAAHGTVVWPHEQDICPDTLYLDSVKIKKSPNKSLQRTGTKSRTSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV15</accession>
    <name>A0A0M2UV15_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01407</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000145">
        <property type="protein sequence ID" value="KKO19893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19893">
        <property type="protein sequence ID" value="KKO19893"/>
        <property type="gene ID" value="BROFUL_01407"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015627">
        <property type="term" value="C:type II protein secretion system complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015628">
        <property type="term" value="P:protein secretion by the type II secretion system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000983">
        <property type="entry name" value="Bac_GSPG_pilin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011453">
        <property type="entry name" value="DUF1559"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012902">
        <property type="entry name" value="N_methyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045584">
        <property type="entry name" value="Pilin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027558">
        <property type="entry name" value="Pre_pil_HX9DG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07963">
        <property type="entry name" value="N_methyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07596">
        <property type="entry name" value="SBP_bac_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00813">
        <property type="entry name" value="BCTERIALGSPG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54523">
        <property type="entry name" value="SSF54523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02532">
        <property type="entry name" value="IV_pilin_GFxxxE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04294">
        <property type="entry name" value="pre_pil_HX9DG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19893.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="221" mass="23720" checksum="E7CC014929895919" modified="2015-11-11" version="1">MIKKRSGDGFTLIELLVVVAIIGILAGILLPVLGKARESARRTQCASNLKQIGLALNMYANDNNEALPTTAGTDTAAEELESLGKLFDVYITDRKVFRCPSDTGVTEAGVLQLTTTNTSFDIDSCSYGYDDNHTANNDPGVVIVADRRGTDTASTGLSNNHSHKGQNVLFIDGHVEWKGTATCGYYGTSHDNIWTLSTAPNTFLNSGQTNNALETDTVIMQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV21</accession>
    <name>A0A0M2UV21_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Polyribonucleotide nucleotidyltransferase</fullName>
            <ecNumber evidence="6">2.7.7.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Polynucleotide phosphorylase</fullName>
            <shortName evidence="6">PNPase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">pnp</name>
        <name evidence="8" type="ORF">BROFUL_01644</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>phosphate + RNA(n+1) = a ribonucleoside 5'-diphosphate + RNA(n)</text>
            <dbReference type="Rhea" id="RHEA:22096"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57930"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.8"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the polyribonucleotide nucleotidyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.8" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000172">
        <property type="protein sequence ID" value="KKO19647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19647">
        <property type="protein sequence ID" value="KKO19647"/>
        <property type="gene ID" value="BROFUL_01644"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2030"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004654">
        <property type="term" value="F:polyribonucleotide nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006402">
        <property type="term" value="P:mRNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.70">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01595">
        <property type="entry name" value="PNPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001247">
        <property type="entry name" value="ExoRNase_PH_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015847">
        <property type="entry name" value="ExoRNase_PH_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036345">
        <property type="entry name" value="ExoRNase_PH_dom2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004087">
        <property type="entry name" value="KH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004088">
        <property type="entry name" value="KH_dom_type_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036612">
        <property type="entry name" value="KH_dom_type_1_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012162">
        <property type="entry name" value="PNPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027408">
        <property type="entry name" value="PNPase/RNase_PH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015848">
        <property type="entry name" value="PNPase_PH_RNA-bd_bac/org-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022967">
        <property type="entry name" value="S1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003029">
        <property type="entry name" value="S1_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11252">
        <property type="entry name" value="PTHR11252"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00013">
        <property type="entry name" value="KH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03726">
        <property type="entry name" value="PNPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01138">
        <property type="entry name" value="RNase_PH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03725">
        <property type="entry name" value="RNase_PH_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00575">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005499">
        <property type="entry name" value="PNPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00322">
        <property type="entry name" value="KH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54791">
        <property type="entry name" value="SSF54791"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55666">
        <property type="entry name" value="SSF55666"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03591">
        <property type="entry name" value="polynuc_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50126">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 6" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="S1 motif" evidence="7">
        <location>
            <begin position="622"/>
            <end position="690"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="486"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="492"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01595"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="705" mass="77507" checksum="1D2D681DC51CDE20" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV49</accession>
    <name>A0A0M2UV49_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">LTD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02928</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000275">
        <property type="protein sequence ID" value="KKO18374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18374">
        <property type="protein sequence ID" value="KKO18374"/>
        <property type="gene ID" value="BROFUL_02928"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001322">
        <property type="entry name" value="Lamin_tail_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036415">
        <property type="entry name" value="Lamin_tail_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00932">
        <property type="entry name" value="LTD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74853">
        <property type="entry name" value="SSF74853"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LTD" evidence="1">
        <location>
            <begin position="2"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="93" mass="9922" checksum="BAFF0E5269C1FEE4" modified="2015-11-11" version="1" fragment="single">MVNPKGDDAGRERVTLLNTTPDVINLQGWSIADKNKRKTMLAALELGPGATTLVTLSSEGAQLSNDGGIITVLDKQGLKIDGVSYTREQVARQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV71</accession>
    <name>A0A0M2UV71_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Na+-translocating NADH-quinone reductase subunit F</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02905</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18399">
        <property type="protein sequence ID" value="KKO18399"/>
        <property type="gene ID" value="BROFUL_02905"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001433">
        <property type="entry name" value="OxRdtase_FAD/NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00175">
        <property type="entry name" value="NAD_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52343">
        <property type="entry name" value="SSF52343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="5">
        <location>
            <begin position="36"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="domain" description="FAD-binding FR-type" evidence="6">
        <location>
            <begin position="145"/>
            <end position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18399.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="542" mass="61346" checksum="844F2BE02DB9D480" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV92</accession>
    <name>A0A0M2UV92_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Perosamine synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rfbE</name>
        <name evidence="4" type="ORF">BROFUL_02390</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the DegT/DnrJ/EryC1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000228">
        <property type="protein sequence ID" value="KKO18911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18911">
        <property type="protein sequence ID" value="KKO18911"/>
        <property type="gene ID" value="BROFUL_02390"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2970"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00616">
        <property type="entry name" value="AHBA_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000653">
        <property type="entry name" value="DegT/StrS_aminotransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30244">
        <property type="entry name" value="PTHR30244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01041">
        <property type="entry name" value="DegT_DnrJ_EryC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000390">
        <property type="entry name" value="PLP_StrS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="181"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="2">
        <location>
            <position position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR000390-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000390-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU004508"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="371" mass="42350" checksum="0C9D327E512E2627" modified="2015-11-11" version="1">MIPVNEPLILEKEMEYVNEALKTGWISSEGKFIKEFEQRFASYVNRKQGIAVDNGTNALILALRALDMPEGSEVIIPSFTIISCALACVYNNLIPVFVDSEADTWNMDISKIEEKITDKTRAIMIVHIYGHPVDADKILPIAKKHNLYVIEDFAEAIGSEYKGVRCGNLGDISCASFYANKVITTGEGGMCLTDNEELDKRLRQLKNLSFVPERRFVHYNLGFNFRMTNIQAAIGLAQTERIEESVKKKIWIGKTYNRLLKPLEEQKVIKLPVEKEWAKNTYWMYGVVLNSAPGLDAQEAMKRLAEKGIQTRPFFYPMHTQPVFEEFPWFRKESLPVSENISKYGFYLPSGLTLTEEQIVKVIKCIKEVLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVA8</accession>
    <name>A0A0M2UVA8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 8">Pyruvate carboxylase</fullName>
            <ecNumber evidence="3 8">6.4.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="16" type="primary">pyc</name>
        <name evidence="16" type="ORF">BROFUL_01262</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>ATP + hydrogencarbonate + pyruvate = ADP + H(+) + oxaloacetate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:20844"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16452"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.4.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 8">
            <name>biotin</name>
            <dbReference type="ChEBI" id="CHEBI:57586"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Carbohydrate biosynthesis; gluconeogenesis.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.4.1.1" evidence="3 8"/>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO19993.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19993">
        <property type="protein sequence ID" value="KKO19993"/>
        <property type="gene ID" value="BROFUL_01262"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1560"/>
    <dbReference type="UniPathway" id="UPA00138"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004736">
        <property type="term" value="F:pyruvate carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006090">
        <property type="term" value="P:pyruvate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
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        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005481">
        <property type="entry name" value="BC-like_N"/>
    </dbReference>
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        <property type="entry name" value="Biotin_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011764">
        <property type="entry name" value="Biotin_carboxylation_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005482">
        <property type="entry name" value="Biotin_COase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003379">
        <property type="entry name" value="Carboxylase_cons_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005479">
        <property type="entry name" value="CbamoylP_synth_lsu-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
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    </dbReference>
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        <property type="match status" value="1"/>
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        <property type="match status" value="1"/>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="BC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00188">
        <property type="entry name" value="BIOTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00866">
        <property type="entry name" value="CPSASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="CPSASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50991">
        <property type="entry name" value="PYR_CT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6 8 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7 8" id="KW-0092">Biotin</keyword>
    <keyword evidence="4 8 16" id="KW-0436">Ligase</keyword>
    <keyword evidence="11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 8 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="16" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Biotin carboxylation" evidence="14">
        <location>
            <begin position="8"/>
            <end position="462"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-grasp" evidence="13">
        <location>
            <begin position="128"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="domain" description="Pyruvate carboxyltransferase" evidence="15">
        <location>
            <begin position="540"/>
            <end position="808"/>
        </location>
    </feature>
    <feature type="domain" description="Lipoyl-binding" evidence="12">
        <location>
            <begin position="1077"/>
            <end position="1152"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="301"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="124"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="208"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="243"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="549"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="621"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" description="via carbamate group" evidence="11">
        <location>
            <position position="718"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="747"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="749"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="882"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
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        </source>
    </evidence>
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        <source>
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        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00013057"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
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        <source>
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        </source>
    </evidence>
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        <source>
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        </source>
    </evidence>
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        <source>
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        </source>
    </evidence>
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        <source>
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        <source>
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        </source>
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        <source>
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        </source>
    </evidence>
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        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS50991"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="EMBL" id="KKO19993.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1152" mass="130093" checksum="6B7C193DF450A29D" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVB5</accession>
    <name>A0A0M2UVB5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01752</name>
    </gene>
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        <name type="scientific">Candidatus Brocadia fulgida</name>
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        <lineage>
            <taxon>Bacteria</taxon>
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            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
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            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000182">
        <property type="protein sequence ID" value="KKO19525.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19525">
        <property type="protein sequence ID" value="KKO19525"/>
        <property type="gene ID" value="BROFUL_01752"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19525.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="40" mass="4633" checksum="28BDB157331A9F77" modified="2015-11-11" version="1" fragment="single">KVERVMRTVNLRVNVSKWSVTGALNVTKIRLAYYYNGFDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVC1</accession>
    <name>A0A0M2UVC1_9BACT</name>
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        <submittedName>
            <fullName evidence="8">Cell division protein</fullName>
        </submittedName>
    </protein>
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        <name evidence="8" type="ORF">BROFUL_02329</name>
    </gene>
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        <name type="scientific">Candidatus Brocadia fulgida</name>
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        <lineage>
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            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
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                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
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            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
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        <property type="molecule type" value="Genomic_DNA"/>
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    <dbReference type="PATRIC" id="fig|380242.3.peg.2894"/>
    <dbReference type="Proteomes" id="UP000034954">
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    </dbReference>
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        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
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        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="entry name" value="Cell_cycle_FtsW-rel_CS"/>
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        <property type="entry name" value="FtsW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001182">
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    </dbReference>
    <dbReference type="PANTHER" id="PTHR30474">
        <property type="entry name" value="PTHR30474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01098">
        <property type="entry name" value="FTSW_RODA_SPOVE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02614">
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00428">
        <property type="entry name" value="FTSW_RODA_SPOVE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="8" id="KW-0132">Cell division</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4" id="KW-0133">Cell shape</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="7"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="36"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="67"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="100"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="133"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="158"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="258"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="296"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="331"/>
            <end position="355"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18936.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="399" mass="43451" checksum="76ABFA40FD8B5E3A" modified="2015-11-11" version="1">MKPWRVIIYVMVVLLGFSVVTVYSTDMTTSGSSGTGYQFIKHILWIGVGSSFLVTMSKIDYHYLQKLSMPILIVSFVLLVLVLLPGIGTVTNGARRWIRLNRIVGIQPSEFAKLAMIIFVSNYIAKNQGRMSAFLYGFVIPMGITAATSALILKEPDFGTAAFIALLSMMMLVVGGARVIYVFFTAMALAPCIHKMLFDVQFRKVRLLAFLDPWKDPSGTGYQIIQSWIALGSGGLTGLGLGNSRQKLFFLPESNSDFIFTIIGEEFGFLGVICVIGLFLLFLWQGLKIVHAAKDVFGFFLGFGITMMFGLQAMLNIAVVSGAVPTKGIPLPFISSGGSSLLFSMIGVGVLVNIARQSSAGETISLPTDKGDLSEGKLDRILPLRVWSKITSKVAGFSW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVD4</accession>
    <name>A0A0M2UVD4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">tRNA N6-adenosine threonylcarbamoyltransferase</fullName>
            <ecNumber evidence="6">2.3.1.234</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">N6-L-threonylcarbamoyladenine synthase</fullName>
            <shortName evidence="6">t(6)A synthase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">tRNA threonylcarbamoyladenosine biosynthesis protein TsaD</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">tsaD</name>
        <name evidence="8" type="ORF">BROFUL_01509</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>adenosine(37) in tRNA + L-threonylcarbamoyladenylate = AMP + H(+) + N(6)-L-threonylcarbamoyladenosine(37) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:37059"/>
            <dbReference type="Rhea" id="RHEA-COMP:10162"/>
            <dbReference type="Rhea" id="RHEA-COMP:10163"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:73682"/>
            <dbReference type="ChEBI" id="CHEBI:74411"/>
            <dbReference type="ChEBI" id="CHEBI:74418"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.3.1.234"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
        <text evidence="6">Binds 1 Fe(2+) ion per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the KAE1 / TsaD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.234" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000155">
        <property type="protein sequence ID" value="KKO19782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19782">
        <property type="protein sequence ID" value="KKO19782"/>
        <property type="gene ID" value="BROFUL_01509"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1864"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061711">
        <property type="term" value="F:N(6)-L-threonylcarbamoyladenine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002949">
        <property type="term" value="P:tRNA threonylcarbamoyladenosine modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01445">
        <property type="entry name" value="TsaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000905">
        <property type="entry name" value="Gcp-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017861">
        <property type="entry name" value="KAE1/TsaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017860">
        <property type="entry name" value="Peptidase_M22_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022450">
        <property type="entry name" value="TsaD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11735">
        <property type="entry name" value="PTHR11735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11735:SF6">
        <property type="entry name" value="PTHR11735:SF6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00814">
        <property type="entry name" value="TsaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00789">
        <property type="entry name" value="OSIALOPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00329">
        <property type="entry name" value="gcp_kae1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03723">
        <property type="entry name" value="T6A_TsaD_YgjD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01016">
        <property type="entry name" value="GLYCOPROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="4 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0808">Transferase</keyword>
    <keyword evidence="3 6" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="TsaD" evidence="7">
        <location>
            <begin position="23"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="134"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="111"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="115"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="167"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="180"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="184"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="280"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="308"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001866"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01445"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="335" mass="35827" checksum="260018360CA25E7D" modified="2015-11-11" version="1">MLILGIETSCDETSAAVVKDGREIVSNVILSQNALHREFGGVVPEIACRAHLESIIGIIDNAIRDAKTPLKDINAIAVVNTPGLIGALLIGVTAAKSLSMVLDVPLIAVDHLHAHIYANNLEYDDISYPTISLVVSGGHTILFLSESETRHVPLGWTIDDAAGEAFDKVSKILGLGYPGGPLIDRLAKNGNHHAVAFPRAYLEKESLDFSFSGLKTAVLYYYRGQNARSAKAIKPDNQTVADIAASFQEAVVDVLVEKTFLAAGRYNVRGILTGGGVAANSRLRQRLKDKSKELAIPVYCPSVRLCTDNAAMVAGLAYKKYLEGNIAGPDIEAIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVG1</accession>
    <name>A0A0M2UVG1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">TonB-dependent receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02813</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the TonB-dependent receptor family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000265">
        <property type="protein sequence ID" value="KKO18489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="SMR" id="A0A0M2UVG1"/>
    <dbReference type="EnsemblBacteria" id="KKO18489">
        <property type="protein sequence ID" value="KKO18489"/>
        <property type="gene ID" value="BROFUL_02813"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039426">
        <property type="entry name" value="BtuB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012910">
        <property type="entry name" value="Plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037066">
        <property type="entry name" value="Plug_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30069">
        <property type="entry name" value="PTHR30069"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07715">
        <property type="entry name" value="Plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="2 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0675">Receptor</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0798">TonB box</keyword>
    <feature type="domain" description="Plug" evidence="6">
        <location>
            <begin position="77"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="domain" description="TonB_dep_Rec" evidence="5">
        <location>
            <begin position="302"/>
            <end position="690"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF07715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="692" mass="79451" checksum="4CBCDA77EC3415A9" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVJ9</accession>
    <name>A0A0M2UVJ9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Dipeptide epimerase</fullName>
            <ecNumber evidence="5">5.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02305</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="4 5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="4 5">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the mandelate racemase/muconate lactonizing enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.1.1.-" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO19011.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19011">
        <property type="protein sequence ID" value="KKO19011"/>
        <property type="gene ID" value="BROFUL_02305"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2869"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016855">
        <property type="term" value="F:racemase and epimerase activity, acting on amino acids and derivatives"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009063">
        <property type="term" value="P:cellular amino acid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03319">
        <property type="entry name" value="L-Ala-DL-Glu_epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034603">
        <property type="entry name" value="Dipeptide_epimerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036849">
        <property type="entry name" value="Enolase-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029017">
        <property type="entry name" value="Enolase-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029065">
        <property type="entry name" value="Enolase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018110">
        <property type="entry name" value="Mandel_Rmase/mucon_lact_enz_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013342">
        <property type="entry name" value="Mandelate_racemase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034593">
        <property type="entry name" value="Mandelate_racemase_DgoD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013341">
        <property type="entry name" value="Mandelate_racemase_N_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48080">
        <property type="entry name" value="PTHR48080"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13378">
        <property type="entry name" value="MR_MLE_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02746">
        <property type="entry name" value="MR_MLE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00010">
        <property type="entry name" value="dipeptide_epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00922">
        <property type="entry name" value="MR_MLE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51604">
        <property type="entry name" value="SSF51604"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54826">
        <property type="entry name" value="SSF54826"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00908">
        <property type="entry name" value="MR_MLE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00909">
        <property type="entry name" value="MR_MLE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5 7" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4 5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MR_MLE" evidence="6">
        <location>
            <begin position="137"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; specific for (R)-substrate epimerization" evidence="3">
        <location>
            <position position="156"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; specific for (S)-substrate epimerization" evidence="3">
        <location>
            <position position="253"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="180"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="206"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="231"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR634603-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR634603-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU366006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19011.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="358" mass="39508" checksum="52B48A50624E2530" modified="2015-11-11" version="1">MNLSSYPLDLKLRHTFQIARETRDIQNNVVVMLRDGDGVIGFGEAAPTRFFGEDVRSVARALGQSVDLLKQANPFHLEDITHLLKERFPGDASARAAIDIALYDLIGKKLNIPLYQLLGLKQPTEKVTSFTIGIDTLEKMCRKVDEAKDFPVLKIKAGFKEDMETLRELRKITKAVFRIDANTGWTLSEAREKLTLMENLGVELVEQPFPVGSIELLQKIRHYVKIPIFVDEDVKTARDIPAFSGAVDGINIKLMKCGGIREAIRMIHTARAHGLKIMIGCNIESSVSITAAAHLATLVDYIDLDGHLLVVNDPYTGVTADKGRLTLPAGDGLGVSPRSSETLSSLCKSDADKPFIRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVK3</accession>
    <name>A0A0M2UVK3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_02310</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the autoinducer-2 exporter (AI-2E) (TC 2.A.86) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO19016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19016">
        <property type="protein sequence ID" value="KKO19016"/>
        <property type="gene ID" value="BROFUL_02310"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002549">
        <property type="entry name" value="AI-2E-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21716">
        <property type="entry name" value="PTHR21716"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01594">
        <property type="entry name" value="AI-2E_transport"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="40"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="69"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="212"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="278"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="312"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="340"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="368"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="143"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="151"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="418" mass="46554" checksum="11179FE227C32C6E" modified="2015-11-11" version="1">MENERQKMLDNLWVRVMLAGISIILFFVLCYFLRGTLISLLLAFIVAYIFDPAVDFFERKTWPFTRKHIQRGFGIVFIIITVFLTTAGFLTYAIPKTVSGVYQVGGIIRYHYPKYQAAFESWLGTHGDTEFVQSIKSLLGVTQEPAPDSEQKTIPSEDIEKDSGSWIPPEHKNTAADTTSQGKKTPLIDVVWRFKKHFPQVVGFFLDIGKNIFYSTFGFFGIIVNVIIFSVVSVYLLKDFNTIAKAIKDFFPASKRDHAVRVLSKVNDNLRHFLRGQLIVCLILSLIYSIGLTIAGIPLSFLLGFAGGFGNLIPFVGTGTGILLASVLALFHFHDFAHIVYVLITFGVGQMLEATVITPRIMGKGLGLSPVMVILSILICSQLFGFLGLLLAVPIASTVKVFVDAIISKYKSSEYYKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVQ5</accession>
    <name>A0A0M2UVQ5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Histidine kinase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01373</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000141">
        <property type="protein sequence ID" value="KKO19922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19922">
        <property type="protein sequence ID" value="KKO19922"/>
        <property type="gene ID" value="BROFUL_01373"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Histidine kinase" evidence="3">
        <location>
            <begin position="305"/>
            <end position="524"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="271"/>
            <end position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="529" mass="59963" checksum="527E4ED6B996877E" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVU2</accession>
    <name>A0A0M2UVU2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02689</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000247">
        <property type="protein sequence ID" value="KKO18614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18614">
        <property type="protein sequence ID" value="KKO18614"/>
        <property type="gene ID" value="BROFUL_02689"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="34" mass="3914" checksum="622946A760B49537" modified="2015-11-11" version="1" fragment="single">MLEMLNNIVYYGGIDILWKINQNPVKKSIAPSFC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVU6</accession>
    <name>A0A0M2UVU6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01031</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20183.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20183">
        <property type="protein sequence ID" value="KKO20183"/>
        <property type="gene ID" value="BROFUL_01031"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017111">
        <property type="term" value="F:nucleoside-triphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00796">
        <property type="entry name" value="NTPase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004948">
        <property type="entry name" value="Nuc-triphosphatase_THEP1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43146">
        <property type="entry name" value="PTHR43146"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03266">
        <property type="entry name" value="NTPase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20183.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="171" mass="19430" checksum="03A3E1AE64B65D07" modified="2015-11-11" version="1">MKRHILLTGKPGIGKTSVIKKILPLVGMDAGGFFTEEIRVMDRRVGFRIVTLDGRDGILAHVECNSNYKVGKYRVDLDSFEKIAIPALEDAMRCKSVVVVDEIGTMELFSQKFRELLEKILNSDKALLCTIKESGDTFTEEIKKRKDVTLITINYKNREPLPEKVLKMLKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVW8</accession>
    <name>A0A0M2UVW8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02651</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000242">
        <property type="protein sequence ID" value="KKO18644.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18644">
        <property type="protein sequence ID" value="KKO18644"/>
        <property type="gene ID" value="BROFUL_02651"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18644.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="84" mass="9724" checksum="4211D37B13E08558" modified="2015-11-11" version="1">MDKLCLSVLNYYKSQTASLWSINCYHKMNFTKKPKKSLTAKDLYKYFLAVRLSFCATRISVYVTTCYFTPLLPCTGEDPFLCVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW06</accession>
    <name>A0A0M2UW06_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">LPG_synthase_C domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_02635</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18684">
        <property type="protein sequence ID" value="KKO18684"/>
        <property type="gene ID" value="BROFUL_02635"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024320">
        <property type="entry name" value="LPG_synthase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016732">
        <property type="entry name" value="UCP018688"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR41373">
        <property type="entry name" value="PTHR41373"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09924">
        <property type="entry name" value="LPG_synthase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="LPG_synthase_C" evidence="7">
        <location>
            <begin position="2"/>
            <end position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF09924"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="245" mass="28386" checksum="41EB8A062EA58D35" modified="2015-11-11" version="1">MCMMLPPLGKNNIQNTLYECFSLMREMNDTRGFESYINYVYEDFLNLFDKSSFRIVEGYPDYIYNTSDLIKLAGRKYEKKRNEINYFKKHYTASFEKFSPRHIADALLMIDQWKREKIHESNLSNHNEAHYQYSLVHEAEAAKCAIIFSEELGLQGAIITIDGCIEGITLGEPIASHTASVLIEKTNNTFCGMPQFIYQQFCSSDFSKVAYVNAGEDWGIEGLRRAKMSYHPCMLAKKFLIYEKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW36</accession>
    <name>A0A0M2UW36_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00987</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000118">
        <property type="protein sequence ID" value="KKO20278.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20278">
        <property type="protein sequence ID" value="KKO20278"/>
        <property type="gene ID" value="BROFUL_00987"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20278.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="131" mass="14838" checksum="AB241535609AC957" modified="2015-11-11" version="1">MRIMKLGRVISVTRKRKNGHPGPGQAPCPNFATGTKLPRNHPLTHEVSKNRLKRYFLKTGSASDYTQIKALSEFSKPVPYQKMRRANHPDNYRHSSARFFTRPWCGVDMNCREKSLSGVSSKPVIDAVPCL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW41</accession>
    <name>A0A0M2UW41_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative ribokinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00992</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000118">
        <property type="protein sequence ID" value="KKO20283.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20283">
        <property type="protein sequence ID" value="KKO20283"/>
        <property type="gene ID" value="BROFUL_00992"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1242"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016773">
        <property type="term" value="F:phosphotransferase activity, alcohol group as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002173">
        <property type="entry name" value="Carboh/pur_kinase_PfkB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011611">
        <property type="entry name" value="PfkB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00294">
        <property type="entry name" value="PfkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00584">
        <property type="entry name" value="PFKB_KINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PfkB" evidence="3">
        <location>
            <begin position="37"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20283.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="197" mass="21656" checksum="36FDEBEF2ACC9348" modified="2015-11-11" version="1">MKHNASFQFNAVDARTTLAIIAPGNLGDMVDFSNTYKKKGIDYIFDPGQSLPAWTKDLLTELIHGSKIFICNDYELQLTQEKTSMTIDDILKKTKTLIVTKGEYGSVVMQRENDSVCSIDIPVAKTQQVTDPTGAGDAYRAGLIKGLVSSKKDIVHAAKIGAVCAAYCVEVYGPQNFHFTHDSFNERFASAFGEKAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW60</accession>
    <name>A0A0M2UW60_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Aspartate carbamoyltransferase</fullName>
            <ecNumber evidence="5">2.1.3.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Aspartate transcarbamylase</fullName>
            <shortName evidence="5">ATCase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">pyrB</name>
        <name evidence="9" type="ORF">BROFUL_02079</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>carbamoyl phosphate + L-aspartate = H(+) + N-carbamoyl-L-aspartate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:20013"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:32814"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
            <dbReference type="EC" id="2.1.3.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 5">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 2/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.3.2" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000209">
        <property type="protein sequence ID" value="KKO19201.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19201">
        <property type="protein sequence ID" value="KKO19201"/>
        <property type="gene ID" value="BROFUL_02079"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2594"/>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00116"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016597">
        <property type="term" value="F:amino acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004070">
        <property type="term" value="F:aspartate carbamoyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006207">
        <property type="term" value="P:'de novo' pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006520">
        <property type="term" value="P:cellular amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1370">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00001">
        <property type="entry name" value="Asp_carb_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006132">
        <property type="entry name" value="Asp/Orn_carbamoyltranf_P-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006130">
        <property type="entry name" value="Asp/Orn_carbamoylTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036901">
        <property type="entry name" value="Asp/Orn_carbamoylTrfase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002082">
        <property type="entry name" value="Asp_carbamoyltransf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006131">
        <property type="entry name" value="Asp_carbamoyltransf_Asp/Orn-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11405:SF16">
        <property type="entry name" value="PTHR11405:SF16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00185">
        <property type="entry name" value="OTCace"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02729">
        <property type="entry name" value="OTCace_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00100">
        <property type="entry name" value="AOTCASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53671">
        <property type="entry name" value="SSF53671"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00670">
        <property type="entry name" value="asp_carb_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00097">
        <property type="entry name" value="CARBAMOYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="OTCace_N" evidence="8">
        <location>
            <begin position="7"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="domain" description="OTCace" evidence="7">
        <location>
            <begin position="151"/>
            <end position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00001"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19201.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="308" mass="34302" checksum="EBC0FE528B8CB8D3" modified="2015-11-11" version="1">MASFQQRDIISIRHFNKDELLYILDLARRMEQMDHADLLKGKVLASLFFEPSTRTRLSFESSMKRLGGTVIGFAESGVSSAAKGESLSDSVRIVEGYCDIIVLRHYLEGSAQLAADVAAIPVINAGDGANQHPTQTFLDLYTIQKTKGTLEGLTIGFLGDLKYGRTVHSLAYALAHFGAEMYFISPPSLRLPGDFMEVLKDRKVKCHENESLMGISKRLDVIYCTRIQKERFADPVEFEKVRGIYRLSKAMLEEVGIKDDLKVLHPLPRVDEMDDSLDATDYAVYFHQARNGVPVRKAILAAVLGAIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWK3</accession>
    <name>A0A0M2UWK3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Lactamase_B domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01352</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000139">
        <property type="protein sequence ID" value="KKO19960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19960">
        <property type="protein sequence ID" value="KKO19960"/>
        <property type="gene ID" value="BROFUL_01352"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="17"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="210" mass="23079" checksum="C78AEA4E0ACB3CF6" modified="2015-11-11" version="1">MKLPNIIFETLAVGPLAVNCFIIGSKKDNKAVVIDAGGDHKEILKLLKKHNLTLQAIINTHAHFDHVGGVKPLQDLTGARFLLHQEDIPLLNHLNEQTAAFGLPPIAIPKIDRPLVDMEEIIVGDETIRVIHTPGHSPGSICFFVDNAIFVGDTLFAGSIGRTDLYGGSYTKLINSIKTRLFTFEDHVIVYPGHGTFTTIGDEKLHNPFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWQ4</accession>
    <name>A0A0M2UWQ4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Nitrite transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">nar1</name>
        <name evidence="6" type="ORF">BROFUL_01889</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000195">
        <property type="protein sequence ID" value="KKO19401.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19401">
        <property type="protein sequence ID" value="KKO19401"/>
        <property type="gene ID" value="BROFUL_01889"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2358"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1080.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023271">
        <property type="entry name" value="Aquaporin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000292">
        <property type="entry name" value="For/NO2_transpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30520">
        <property type="entry name" value="PTHR30520"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01226">
        <property type="entry name" value="Form_Nir_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00790">
        <property type="entry name" value="fnt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="43"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="84"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="120"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="171"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="202"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="263"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19401.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="304" mass="33455" checksum="907276A0EDC5E116" modified="2015-11-11" version="1">MTENNIPKPAGPEVTDAYSPPQIAARIDRVALVKAKLSPSQTFMLSILAGSYLALGAQFATLVISDSTLHLGLTSLIEGIVYSLGFILAIIGGAEVFTGNCLIIMGYVSKRITTRELLSNWIISYTGNFIGCLLMVCWMYKSQQWEFFNHMVGAKALLIAHKKVNLSFMNAFARGVLCNALICLAVWLCFSGRSVADKVISIIFPIGGFVASGFEQCVSNMYYIPTGIVLRKNEAIIAASEKMTGKPLDLSHLTWKGFLINNLIPVTLGNIVGGVVLIGIIFWFVYLRPHINLSLRVKRDFWHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWU9</accession>
    <name>A0A0M2UWU9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GDP-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase</fullName>
            <ecNumber evidence="2">2.4.1.57</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">pimA</name>
        <name evidence="2" type="ORF">BROFUL_01825</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.57" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000190">
        <property type="protein sequence ID" value="KKO19446.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19446">
        <property type="protein sequence ID" value="KKO19446"/>
        <property type="gene ID" value="BROFUL_01825"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glycos_transf_1" evidence="1">
        <location>
            <begin position="83"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19446.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="279" mass="32219" checksum="EAA731A1531F8E94" modified="2015-11-11" version="1">MIPVFVSSRSMRPFKIALNAQTRILWIHDHTNVTYLEGENPGRLLLDSIFAISRWQLNEWSRYFRIPNDCFYLTRNGVDLTMFKPCKKRNRNRLVYVSRPNRGLNVLLLLFPYIRQRIPDAELHICTYQLPGDKIDGQIDQLIQQPGVYMRGSLSKTSLASELSIARLMLYPCTFHETSCIAAIEAQASGTPVVTSELAALSETVMNDVSGYLIPGDPHTSEFRCRFIETVVHLVTNEESWQRLSQGARYRTELLYDWNIIAKGWLEKFSQLTRQKSKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWV6</accession>
    <name>A0A0M2UWV6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00724</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000090">
        <property type="protein sequence ID" value="KKO20548.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20548">
        <property type="protein sequence ID" value="KKO20548"/>
        <property type="gene ID" value="BROFUL_00724"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20548.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="63" mass="7048" checksum="E37C0CFF29B9C309" modified="2015-11-11" version="1">MSMNLEDSPGLCQREAQVMMRKKGMWNNADENGVVTKVTKEKIDQPIGAFVKGQRYVSLCSQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWY4</accession>
    <name>A0A0M2UWY4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Translation elongation factor G</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01192</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000127">
        <property type="protein sequence ID" value="KKO20080.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20080">
        <property type="protein sequence ID" value="KKO20080"/>
        <property type="gene ID" value="BROFUL_01192"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1473"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd16262">
        <property type="entry name" value="EFG_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01434">
        <property type="entry name" value="EFG_mtEFG1_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03713">
        <property type="entry name" value="EFG_mtEFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041095">
        <property type="entry name" value="EFG_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009022">
        <property type="entry name" value="EFG_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035647">
        <property type="entry name" value="EFG_III/V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035649">
        <property type="entry name" value="EFG_V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000640">
        <property type="entry name" value="EFG_V-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005517">
        <property type="entry name" value="Transl_elong_EFG/EF2_IV"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00679">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14492">
        <property type="entry name" value="EFG_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03764">
        <property type="entry name" value="EFG_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00838">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00889">
        <property type="entry name" value="EFG_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54980">
        <property type="entry name" value="SSF54980"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="3" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="4">
        <location>
            <begin position="7"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20080.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="685" mass="75019" checksum="E13457807D3169D0" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWY9</accession>
    <name>A0A0M2UWY9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Methyltransf_25 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00888</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000109">
        <property type="protein sequence ID" value="KKO20367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20367">
        <property type="protein sequence ID" value="KKO20367"/>
        <property type="gene ID" value="BROFUL_00888"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041698">
        <property type="entry name" value="Methyltransf_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13649">
        <property type="entry name" value="Methyltransf_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Methyltransf_25" evidence="1">
        <location>
            <begin position="41"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="254" mass="28945" checksum="2DAC8CC7A58439C5" modified="2015-11-11" version="1">MVFKEKYANAYDDLYQDKDYEKECDFIEAIFKKFDYKPTTILDLGCGTGGHALILSKRGYKVTGIDRSEYMLEIAKSKAHAADIAIEYVEGDITSINLNRKFDAVVSMFAVMSYQTTNAAIAAVCKLAKDCLVPGGLFMFDCWHGPAVLTDKPTPRIKEVNSGKGEKVIRFTEPQLDIISHIVKVTFKVWNVKNNELSEANETHPMRFLFPQEIKYFLEVAGFDNINFYPFLNLDRDLTVNDWNMMVVGKQKQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX14</accession>
    <name>A0A0M2UX14_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Methyl-accepting chemotaxis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">mcp_2</name>
        <name evidence="10" type="ORF">BROFUL_01770</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000184">
        <property type="protein sequence ID" value="KKO19521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19521">
        <property type="protein sequence ID" value="KKO19521"/>
        <property type="gene ID" value="BROFUL_01770"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2194"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
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        <property type="entry name" value="Chemotax_Me-accpt_rcpt"/>
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        <property type="entry name" value="Cyt_c-like_dom"/>
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        <property type="entry name" value="DUF3365"/>
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        <property type="entry name" value="MCPsignal_dom"/>
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        <property type="entry name" value="CHEMTRNSDUCR"/>
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        <property type="entry name" value="MA"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="CHEMOTAXIS_TRANSDUC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0349">Heme</keyword>
    <keyword evidence="2 4" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="1 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0807">Transducer</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="220"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="9">
        <location>
            <begin position="139"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="domain" description="Methyl-accepting transducer" evidence="8">
        <location>
            <begin position="251"/>
            <end position="480"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="502"/>
            <end position="560"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="5">
        <location>
            <begin position="466"/>
            <end position="496"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="502"/>
            <end position="534"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="535"/>
            <end position="560"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
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    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
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    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00284"/>
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    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Coils"/>
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    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
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    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
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    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
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    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19521.1"/>
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    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="580" mass="63068" checksum="94BB74BFE7BDE32A" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX41</accession>
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        <submittedName>
            <fullName evidence="4">Hydroxylamine oxidoreductase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">hao_4</name>
        <name evidence="4" type="ORF">BROFUL_01190</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
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        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="4">RU1</strain>
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        <cofactor evidence="1">
            <name>heme c</name>
            <dbReference type="ChEBI" id="CHEBI:61717"/>
        </cofactor>
        <text evidence="1">Binds 8 heme c groups per subunit.</text>
    </comment>
    <comment type="PTM">
        <text evidence="1">Binds 8 heme groups per subunit.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
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    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
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            <begin position="476"/>
            <end position="503"/>
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    <feature type="binding site" description="covalent" evidence="1">
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            <position position="73"/>
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        <ligand>
            <name>heme</name>
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            <label>1</label>
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        <ligand>
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        <source>
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        </source>
    </evidence>
    <sequence length="503" mass="57367" checksum="AA26940E948AFB69" modified="2015-11-11" version="1">MGRKRHMKVFLSFVGVAILFGVFCGGIPAQKLDKGVGPYGEFWKPIPTQRYWAPDYFYSPPEEPKGVYTADECTLCHKALNPGLVKAWAESSHANLDKLLDYQKEKLAEIEKTLGRKLTKVGCIDCHGKVGAEKLDHEKELVMPNSALCGGCHKQEYEEFESEKQYGIPDWKPGRESHAKAYDANLDVDVWAAVDKNIVQGCDMCHNIQHKCDSCHTRHAFKASESRRPEACQTCHNGPDHPDIEYYRDSKHGSIYFTEGKDWDWKKPLKDANYIAPTCQSCHMYYKGQYSHNMVRKAIMGEGDVLFYDNVFKGIKPTDYLRNSKELMARREAWIEVCVKCHSPRFSRDYLDSMDNASDAVFQYVSDAYATIKSLYEEGILYPMPENRPKAPAPVAEKYPDLLGGFYGEFWAKSGNPSRIEKDFLYMWENDAFLVRKGLAHMNPNGFTYLSWSNLLKKYVDIQSEANTLRRLAALEKKAKLRPRTKTKSKQTPGAAGPQQNPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX49</accession>
    <name>A0A0M2UX49_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NAD-dependent epimerase/dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01150</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000124">
        <property type="protein sequence ID" value="KKO20125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20125">
        <property type="protein sequence ID" value="KKO20125"/>
        <property type="gene ID" value="BROFUL_01150"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1421"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Epimerase" evidence="1">
        <location>
            <begin position="3"/>
            <end position="291"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="390" mass="44608" checksum="A0FC8726DACE0EAF" modified="2015-11-11" version="1">MRILILGADGYLGWPTCMYFSQRGHDVVGIDNYFRRNAAIALDCEPLLPTPNLIQRAKIWEKITGKRINIHVGDATNYAFLLKIFKEYKPDTVVHYAEQPSAPYSMINQEKAAFTLQNNLISTLNIVYAVKEANRDCHIIKLGTMGEYGTPNIDIEEGWLEINHKGKKDKFLFPRQASSLYHTTKIQDTDMLWFYVRTWGIRVTDLMQGPVYGISTDEADRDSQLVPNFHYDEVFGTVLNRFVVQAVANYPLTVYGKGGQIRGYLNLKDTMQCVYLSATQPVKNGELRIFNQVTETFSVNELADKVCAVGNKLGYNVNINHIENPRKEKEEHYYNPKYTGLLELGLKPNYLTDDELTGIFRKVEQYKDQINRDAIFRGIKWSAETLSGTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX70</accession>
    <name>A0A0M2UX70_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00610</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000085">
        <property type="protein sequence ID" value="KKO20663.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20663">
        <property type="protein sequence ID" value="KKO20663"/>
        <property type="gene ID" value="BROFUL_00610"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="80"/>
            <end position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20663.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="144" mass="16780" checksum="C9119E2F0F63456F" modified="2015-11-11" version="1">MDKKKKTEILSALALDYEILFNHTLEIKKVLLNDLSEGLLETIFEKRGLLLERMSLSIKYYNPINEFCNFTDSIRQDSEIDELLHKIKQKSNAITVLNEEIASLIKQHINNITSYLVKLREGKHYMDTIKMHYNITSSLIDMCG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX88</accession>
    <name>A0A0M2UX88_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00790</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000100">
        <property type="protein sequence ID" value="KKO20487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20487">
        <property type="protein sequence ID" value="KKO20487"/>
        <property type="gene ID" value="BROFUL_00790"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="30" mass="3585" checksum="5A10DE4F59642D37" modified="2015-11-11" version="1" fragment="single">MAVEDATVAHRRFLQREVWGMFGQRITEFC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX89</accession>
    <name>A0A0M2UX89_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01129</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20170.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20170">
        <property type="protein sequence ID" value="KKO20170"/>
        <property type="gene ID" value="BROFUL_01129"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20170.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="51" mass="5948" checksum="0D154BBD600893FA" modified="2015-11-11" version="1">MRELKFIMYVIYGAKSTGKHRKAKETCILQAFLVYLSFTDDNSVFAICLPW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX90</accession>
    <name>A0A0M2UX90_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">ATP synthase subunit alpha</fullName>
            <ecNumber evidence="9">7.1.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">ATP synthase F1 sector subunit alpha</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">F-ATPase subunit alpha</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9 13" type="primary">atpA</name>
        <name evidence="13" type="ORF">BROFUL_01698</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>ATP + 4 H(+)(in) + H2O = ADP + 5 H(+)(out) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:57720"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="7.1.2.2"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 9">Belongs to the ATPase alpha/beta chains family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.1.2.2" evidence="9"/>
    <dbReference type="EMBL" id="LAQJ01000176">
        <property type="protein sequence ID" value="KKO19591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19591">
        <property type="protein sequence ID" value="KKO19591"/>
        <property type="gene ID" value="BROFUL_01698"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2103"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045261">
        <property type="term" value="C:proton-transporting ATP synthase complex, catalytic core F(1)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046961">
        <property type="term" value="F:proton-transporting ATPase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd18113">
        <property type="entry name" value="ATP-synt_F1_alpha_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.150.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01346">
        <property type="entry name" value="ATP_synth_alpha_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023366">
        <property type="entry name" value="ATP_synth_asu-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000793">
        <property type="entry name" value="ATP_synth_asu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038376">
        <property type="entry name" value="ATP_synth_asu_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005294">
        <property type="entry name" value="ATP_synth_F1_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020003">
        <property type="entry name" value="ATPase_a/bsu_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004100">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036121">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000194">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_nucl-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00006">
        <property type="entry name" value="ATP-synt_ab"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00306">
        <property type="entry name" value="ATP-synt_ab_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02874">
        <property type="entry name" value="ATP-synt_ab_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50615">
        <property type="entry name" value="SSF50615"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00962">
        <property type="entry name" value="atpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00152">
        <property type="entry name" value="ATPASE_ALPHA_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="4 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 9" id="KW-0139">CF(1)</keyword>
    <keyword evidence="9" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="13" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 9" id="KW-0406">Ion transport</keyword>
    <keyword evidence="6 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-1278">Translocase</keyword>
    <keyword evidence="2 9" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ATP-synt_ab_N" evidence="12">
        <location>
            <begin position="29"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-synt_ab" evidence="10">
        <location>
            <begin position="149"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-synt_ab_C" evidence="11">
        <location>
            <begin position="371"/>
            <end position="493"/>
        </location>
    </feature>
    <feature type="site" description="Required for activity" evidence="9">
        <location>
            <position position="362"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01346"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF02874"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO19591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="498" mass="54998" checksum="457CE85A19D7A32C" modified="2015-11-11" version="1">MENALTAFFEKVKDTVRTSRFSIRITEEGKVLAVGDGIVHVAGLRDAKLYELIKFESGDEGIVFDLDVDSIGVVLLTDRNGIRAGDKGYKTEQIASVNVSEELLGRVLDALGNPIDDGPKLEQTTPCPVEREAPSLSQRDFITEPLYTGIKVIDSMLAIGKGQRELIIGDPSTGKTSIAVDTVINQKNSHVISVYVVIGQKKSHVLKIIEEVKKYGDFSRTIFVIADASNSPGLQYIAPYSATAIAEYFLDKGKNVLIIYDDLTKHADAYRSLSLLLKKPPGREAYPGDIFFIHSRLLERSAKLNQKSGGGSITALPIVETQQGRISSYIPTNLISITDGQIYLDTLLFNKGIRPAVDVSKSVSRIGGKAQVEAMRTVAERLKIDYSRFIEVEVFTKFGAHLEEETSSLIRRGERLREILKQPQFHPVTLEDEVLSFIILESGILDTVAIASTQKVCKEIINKTKSTFPEIVGRVNLEGLLGKKDLETVKDFIVKERV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXC0</accession>
    <name>A0A0M2UXC0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">ResIII domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01680</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000175">
        <property type="protein sequence ID" value="KKO19606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19606">
        <property type="protein sequence ID" value="KKO19606"/>
        <property type="gene ID" value="BROFUL_01680"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2078"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006935">
        <property type="entry name" value="Helicase/UvrB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04851">
        <property type="entry name" value="ResIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ResIII" evidence="2">
        <location>
            <begin position="105"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="483"/>
            <end position="513"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="571" mass="64704" checksum="08BE276E3ABC9E8A" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXD7</accession>
    <name>A0A0M2UXD7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02172</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000214">
        <property type="protein sequence ID" value="KKO19129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19129">
        <property type="protein sequence ID" value="KKO19129"/>
        <property type="gene ID" value="BROFUL_02172"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2710"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013114">
        <property type="entry name" value="FabA_FabZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30272">
        <property type="entry name" value="PTHR30272"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07977">
        <property type="entry name" value="FabA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="151" mass="16549" checksum="A53EC01D490399A5" modified="2015-11-11" version="1">MIFFEEIRSLLPQKYPFLFIDKAVEFEEGKRIVCVKNVSGNEPVFVGHFPDFAIMPGVLIIEAMAQASIILFRKSLSTQITGDSVFLLASVNNARFTKPVFPGDQLVIEILVEKIVSKGAIVQAMVKVGDKSVAKATLTFGIADKNALISD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXG1</accession>
    <name>A0A0M2UXG1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">30S ribosomal protein S15</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rpsO</name>
        <name evidence="7" type="ORF">BROFUL_01643</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.</text>
    </comment>
    <comment type="function">
        <text evidence="3 6">One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Part of the 30S ribosomal subunit. Forms a bridge to the 50S subunit in the 70S ribosome, contacting the 23S rRNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the universal ribosomal protein uS15 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000172">
        <property type="protein sequence ID" value="KKO19646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19646">
        <property type="protein sequence ID" value="KKO19646"/>
        <property type="gene ID" value="BROFUL_01643"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2029"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00353">
        <property type="entry name" value="Ribosomal_S15p_S13e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01343_B">
        <property type="entry name" value="Ribosomal_S15_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000589">
        <property type="entry name" value="Ribosomal_S15"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005290">
        <property type="entry name" value="Ribosomal_S15_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009068">
        <property type="entry name" value="S15_NS1_RNA-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23321">
        <property type="entry name" value="PTHR23321"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00312">
        <property type="entry name" value="Ribosomal_S15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01387">
        <property type="entry name" value="Ribosomal_S15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47060">
        <property type="entry name" value="SSF47060"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00952">
        <property type="entry name" value="S15_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00362">
        <property type="entry name" value="RIBOSOMAL_S15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1 3 4" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 6" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01343"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003920"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004524"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="88" mass="10290" checksum="4B109C39D587ABF9" modified="2015-11-11" version="1">MMNKEVKQRIINDLRVHDSDTGSPEVQVALLTERINHLSDHLKGHKKDHTSRRGLFLMVGRRAALLKYLSSRDKERYKKLITKLGIRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXH3</accession>
    <name>A0A0M2UXH3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01593</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19661.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19661">
        <property type="protein sequence ID" value="KKO19661"/>
        <property type="gene ID" value="BROFUL_01593"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19661.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="46" mass="5486" checksum="9665CD622CCD1160" modified="2015-11-11" version="1">MSIFMSISLDLRCAILFDNRKLVNEVVIVLLYKNFFFCKFFTNPFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXI3</accession>
    <name>A0A0M2UXI3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02106</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000211">
        <property type="protein sequence ID" value="KKO19179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19179">
        <property type="protein sequence ID" value="KKO19179"/>
        <property type="gene ID" value="BROFUL_02106"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="45" mass="5635" checksum="311DEC96A9B99A0F" modified="2015-11-11" version="1">MVNLLRVLVLRPYYRMKNFITSWGRKERDIFNSDMKKFAEMNKFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXJ5</accession>
    <name>A0A0M2UXJ5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative heme protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00969</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000117">
        <property type="protein sequence ID" value="KKO20295.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20295">
        <property type="protein sequence ID" value="KKO20295"/>
        <property type="gene ID" value="BROFUL_00969"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036280">
        <property type="entry name" value="Multihaem_cyt_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48695">
        <property type="entry name" value="SSF48695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20295.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="198" mass="22321" checksum="17AAEB9915381DDE" modified="2015-11-11" version="1">MLAFVNRQYAKGCLVIAGFLVCFSGGGMALSYAEPTEKGVPNVTYSNPYFKGTKEEKDAQIKRMTSLFGVECDFCHNEDLTVFTDEGKKSKEMMKASVALGVECDYCHLDRKRYKENEKQAKKMFELCEIMGTDCNFCHAGKGKLTPRGEASKTAFVTRDWATEGTKRCLECHIEKKQFALNFYGWQVFNALKGLKGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXL5</accession>
    <name>A0A0M2UXL5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Diguanylate cyclase/phosphodiesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00441</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000058">
        <property type="protein sequence ID" value="KKO20828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20828">
        <property type="protein sequence ID" value="KKO20828"/>
        <property type="gene ID" value="BROFUL_00441"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.551"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01948">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001633">
        <property type="entry name" value="EAL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035919">
        <property type="entry name" value="EAL_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001610">
        <property type="entry name" value="PAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013656">
        <property type="entry name" value="PAS_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013767">
        <property type="entry name" value="PAS_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00563">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13185">
        <property type="entry name" value="GAF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00989">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08448">
        <property type="entry name" value="PAS_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13426">
        <property type="entry name" value="PAS_9"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00052">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00065">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00086">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141868">
        <property type="entry name" value="SSF141868"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50883">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PAS" evidence="1">
        <location>
            <begin position="160"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="2">
        <location>
            <begin position="230"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="1">
        <location>
            <begin position="282"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="1">
        <location>
            <begin position="406"/>
            <end position="475"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="2">
        <location>
            <begin position="478"/>
            <end position="530"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="1">
        <location>
            <begin position="691"/>
            <end position="733"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="2">
        <location>
            <begin position="762"/>
            <end position="816"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="4">
        <location>
            <begin position="848"/>
            <end position="981"/>
        </location>
    </feature>
    <feature type="domain" description="EAL" evidence="3">
        <location>
            <begin position="990"/>
            <end position="1244"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1251" mass="141456" checksum="CD421337D800AF87" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY40</accession>
    <name>A0A0M2UY40_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00281</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000032">
        <property type="protein sequence ID" value="KKO20998.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20998">
        <property type="protein sequence ID" value="KKO20998"/>
        <property type="gene ID" value="BROFUL_00281"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20998.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="72" mass="8075" checksum="AA30FA23ABE56D09" modified="2015-11-11" version="1">MAANSGDPIDLNVLASKFRLWRAQHKTPGTVVDAHREVMLERVAQSMTFEGEPITVSRLKILLDQWAKKQGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY64</accession>
    <name>A0A0M2UY64_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01381</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000142">
        <property type="protein sequence ID" value="KKO19906.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19906">
        <property type="protein sequence ID" value="KKO19906"/>
        <property type="gene ID" value="BROFUL_01381"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19906.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="99" mass="11769" checksum="070061FFECE7A954" modified="2015-11-11" version="1">MINNTVKDIIAPCLWGAAINSLDLEFDKFLIIERALEHGGDRQIEFALATFNHDDIIYVVQQSSYLSPRTVNYWCLFFDLKREDTKCFQKQYRYLWPPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY73</accession>
    <name>A0A0M2UY73_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00239</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000029">
        <property type="protein sequence ID" value="KKO21038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21038">
        <property type="protein sequence ID" value="KKO21038"/>
        <property type="gene ID" value="BROFUL_00239"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.294"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006675">
        <property type="entry name" value="HDIG_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004365">
        <property type="entry name" value="NA-bd_OB_tRNA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01966">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01336">
        <property type="entry name" value="tRNA_anti-codon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00277">
        <property type="entry name" value="HDIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51831">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HD" evidence="1">
        <location>
            <begin position="162"/>
            <end position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="314" mass="35738" checksum="10A7A52BB19542E2" modified="2015-11-11" version="1">MPKKYISSLKTGEVVEDVFLVLKKEVKETREKKPYLNLQLADKTGSLEARKWDAAPHLCNSFHKDAFIKIKGVVETFNNTLQIRVNEISPVAEECVQMSDFVPSTEKDVSAMMSELRQIIKTIRDPYLSKLLDAFFTEESFCKVFSTAPAATQYHHAYLGGLLEHILSVARLAVSFSNLYPMIKRDLLLTGVILHDIGKTRELSYERSFHYTDEGQLTGHLISGVLMIYEKAQKIDGFPSDLLNVLFHLILSHHGEYEWGSPVKPGTPEAIALHHLDNLDAKVYAATKAITEHKDTSSSWTDYVKMFERRLYKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY87</accession>
    <name>A0A0M2UY87_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Carbamoyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01854</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000191">
        <property type="protein sequence ID" value="KKO19439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19439">
        <property type="protein sequence ID" value="KKO19439"/>
        <property type="gene ID" value="BROFUL_01854"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2308"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003696">
        <property type="entry name" value="Carbtransf_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02543">
        <property type="entry name" value="Carbam_trans_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Carbam_trans_N" evidence="1">
        <location>
            <begin position="3"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02543"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="98" mass="11285" checksum="4558E7871759D300" modified="2015-11-11" version="1">MNILGISAFYHDSAACLVQDGRIVSAAQEERFTRKKHDFSFPTNAIQYCLQESGLKVEDLDFVAFYDKPFLKFERILMTYLAYAPVGIRSFIKAMRYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYA3</accession>
    <name>A0A0M2UYA3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01338</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000139">
        <property type="protein sequence ID" value="KKO19946.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19946">
        <property type="protein sequence ID" value="KKO19946"/>
        <property type="gene ID" value="BROFUL_01338"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19946.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="54" mass="6376" checksum="1A7EFD6D5907B183" modified="2015-11-11" version="1">MSERLLRFTRNDNVQCAIKVHGHCHCEGLFRSNLPTFIKEIWLRLCCAMVCPKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYB2</accession>
    <name>A0A0M2UYB2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01843</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000190">
        <property type="protein sequence ID" value="KKO19464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19464">
        <property type="protein sequence ID" value="KKO19464"/>
        <property type="gene ID" value="BROFUL_01843"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19464.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="353" mass="40973" checksum="8B24860AEB49F0D8" modified="2015-11-11" version="1">MLPVQTPACVQTCTNRRQTEPPPPALIFLGIHMNLLPFLEIRLSFSKKVPILKHMKIELSTMCFRQDEIHAKVKRCRDAVESQGFEFGIQLHNSVTRDLYDKIKGLDVPFTIHAPVLSDYFINLAHNDFQTALAAFENTAYVMQSLKCTVALFHGFFMTSRPVKNDPNNYNKVLREAIDMKYRLNDTRVMDPKFLETEEFKKYRDTVKTHMKQLRERYAAYTICMENDFPGIGNGNQTPEHMIYLDCPIWLDTGHLWASAILNKFDFYEGLESLCKNGQVIGVHLNTNRTPLTWDLKYPDGDTHSHFSKKYDMDMDKIISVLKRNHISHFTIEIIDGDVDDITFFIETYQSVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYG5</accession>
    <name>A0A0M2UYG5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_00651</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the type-I restriction system S methylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000087">
        <property type="protein sequence ID" value="KKO20615.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20615">
        <property type="protein sequence ID" value="KKO20615"/>
        <property type="gene ID" value="BROFUL_00651"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.823"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.220.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000055">
        <property type="entry name" value="Restrct_endonuc_typeI_TRD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044946">
        <property type="entry name" value="Restrct_endonuc_typeI_TRD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01420">
        <property type="entry name" value="Methylase_S"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0680">Restriction system</keyword>
    <feature type="domain" description="Methylase_S" evidence="5">
        <location>
            <begin position="10"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="domain" description="Methylase_S" evidence="5">
        <location>
            <begin position="317"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="467"/>
            <end position="502"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010923"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01420"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20615.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="502" mass="58214" checksum="5CE117E0D5838567" modified="2015-11-11" version="1">MVDRKQIPPSWEVVKHSEIAEINPKLPFKNIDDNTEVSFLPMKLVEEEKNIFYLTEFRKYKDVKKGFTPFTNGDVIFAKITPCMENGKCVVLHDLKNEVGFGSTEFHVSRPRECVIAKYIFYSIIQQQFRRIAESNMTGSVGQKRVTTLFFSEFEIPLPPFPEQHRIVSKIEELFSELDKGIESLKTAHQQLKIYRQAVLKWAFEGRLTEEWRKENSILNTAYDYLRQVSEIRKKNFLEAKKNGIKRIEKNYDFEFRRSEEIKTWANATLNKLIYIAGRIGWRGLTKDEYTIEGPMFLSVHSLNYGKYVEFKDAYHISEERYLESPEIMLKEKDILLCKDGAGIGKIGIINKLPSEATVNSSLLIIRGMEIFIPEFLYHLLSGPKLQGIVRKRITGSATPHLFQNDIRKFELLIPPLEEQHQIVSEIETRLSVCDKLEETITTALRQGDALRQSILKKAFEGRLVEQDPNDEPASKLLERIKADKVKGMTKDDTRKKKIPKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYP5</accession>
    <name>A0A0M2UYP5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00565</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000078">
        <property type="protein sequence ID" value="KKO20710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20710">
        <property type="protein sequence ID" value="KKO20710"/>
        <property type="gene ID" value="BROFUL_00565"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005500">
        <property type="entry name" value="DUF309"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023203">
        <property type="entry name" value="TTHA0068_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34796">
        <property type="entry name" value="PTHR34796"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03745">
        <property type="entry name" value="DUF309"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140663">
        <property type="entry name" value="SSF140663"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="90" mass="10544" checksum="3EB1A4CCFC3C60BB" modified="2015-11-11" version="1">MHIDLNNIEKGIKLFNEGNYFEAHETWEDQWRGIEKSPEKNFIQGLIVIAVALHHYKRKNYKGTSKLLGKGIKLLQELKEPKMNINIKVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYS3</accession>
    <name>A0A0M2UYS3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 7">Cysteine desulfurase</fullName>
            <ecNumber evidence="5 7">2.8.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Nitrogenase metalloclusters biosynthesis protein NifS</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_01659</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>[sulfur carrier]-H + L-cysteine = [sulfur carrier]-SH + L-alanine</text>
            <dbReference type="Rhea" id="RHEA:43892"/>
            <dbReference type="Rhea" id="RHEA-COMP:14737"/>
            <dbReference type="Rhea" id="RHEA-COMP:14739"/>
            <dbReference type="ChEBI" id="CHEBI:29917"/>
            <dbReference type="ChEBI" id="CHEBI:35235"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="ChEBI" id="CHEBI:64428"/>
            <dbReference type="EC" id="2.8.1.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 6">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.8.1.7" evidence="5 7"/>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19624.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19624">
        <property type="protein sequence ID" value="KKO19624"/>
        <property type="gene ID" value="BROFUL_01659"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2048"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031071">
        <property type="term" value="F:cysteine desulfurase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006520">
        <property type="term" value="P:cellular amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000192">
        <property type="entry name" value="Aminotrans_V_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020578">
        <property type="entry name" value="Aminotrans_V_PyrdxlP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017772">
        <property type="entry name" value="Cys_deSase_NifS_bac/arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016454">
        <property type="entry name" value="Cysteine_dSase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00266">
        <property type="entry name" value="Aminotran_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005572">
        <property type="entry name" value="NifS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03402">
        <property type="entry name" value="FeS_nifS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00595">
        <property type="entry name" value="AA_TRANSFER_CLASS_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_5" evidence="8">
        <location>
            <begin position="4"/>
            <end position="364"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU364075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19624.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="400" mass="43733" checksum="ED0DC9992D24B326" modified="2015-11-11" version="1">MKVVYADNNATTMVAPEVVEAMLPYFTEYYGNPSSMHTFGGQVAKKMDVARQQVAEIIGADPTEVVFSSCGTESDNAAIWGILRANPRKRHIVTTRVEHSAVYNLGKYLAQSGYHVTELGVDSDGMLNLDELSDTIREDTAIVSIMYANNETGVIFPIEQIGQIVKSKGSILHTDAVQAVGKIPLNLSKSTIDLLTLSGHKLHAPKGVGALFIRKGITFTPFIVGGHQEKNRRGGTENVPSIIGLGKACELAKSYMDDEWVGIKQLRDTLEEEILKKAPDARVNGHKTQRLPNTTNLSFEFVEGEAILLLLNEKGICASSGSACTSGSLEPSHVLRAMGVPFTAVHGSVRLSLSRYNTREDVQYIIEHLPPIIRRLREISPYGREMKMKEQAAKVSAGIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ70</accession>
    <name>A0A0M2UZ70_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01519</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000156">
        <property type="protein sequence ID" value="KKO19769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19769">
        <property type="protein sequence ID" value="KKO19769"/>
        <property type="gene ID" value="BROFUL_01519"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="SSF51126"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="259"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="300" mass="33782" checksum="1716325A8045EE6C" modified="2015-11-11" version="1" fragment="single">QNLANNIEVRNCLFRKTWDGIVAGNAFNLHIHHNTFEGTRDDVVQLGSACYDIEINHNKMLFVSKGPSRHGTGSSLKPGTKYIHHNIIDCSKSMLGGRNDPNNLLNRKYHGPNGDGMVWARPFSRHEGNGYGTADPWKIYNNTIVFGKELNNAGAGHEYTERSFYPNNPQEVYNNIIIQTMDHWLARGIRVSDGSQIHDGNIYYRQFANPRNYFLRLWEDGNSTSNFRSLSEFSASQCFTDSKEYYSRGFEDAGVEADPHLDGNYYPDPNGPAADGAVPLPTDWPGQDYGDYRGALPPLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ96</accession>
    <name>A0A0M2UZ96_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00313</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000036">
        <property type="protein sequence ID" value="KKO20960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20960">
        <property type="protein sequence ID" value="KKO20960"/>
        <property type="gene ID" value="BROFUL_00313"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017039">
        <property type="entry name" value="Virul_fac_BrkB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30213">
        <property type="entry name" value="PTHR30213"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03631">
        <property type="entry name" value="Virul_fac_BrkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00765">
        <property type="entry name" value="yihY_not_rbn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="60"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="244"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="286"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="327"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="359"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="392"/>
            <end position="424"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="580" mass="65580" checksum="13F9E71B2C94F3DD" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ98</accession>
    <name>A0A0M2UZ98_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00133</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000016">
        <property type="protein sequence ID" value="KKO21132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21132">
        <property type="protein sequence ID" value="KKO21132"/>
        <property type="gene ID" value="BROFUL_00133"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="181" mass="19430" checksum="44B0E15FFC7DE26F" modified="2015-11-11" version="1">MGGAFLRYDAIEKARKVGVKGVIVGGFNDEDLKKLLGYDLGVAITGSEEIGLTLILTEGFGQIPIAQKTFDLLQSRSGAKTSINGATQIRAGVVRPEIIIPYETSKSGGTETGKPAERGMETGDTVRVIRVPYFGKIGRIKALPFSPQTIETEATVRILEIGFSDGSTVMVPRANVEMIER</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZC2</accession>
    <name>A0A0M2UZC2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">HAMP domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_00102</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000012">
        <property type="protein sequence ID" value="KKO21167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21167">
        <property type="protein sequence ID" value="KKO21167"/>
        <property type="gene ID" value="BROFUL_00102"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033479">
        <property type="entry name" value="dCache_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029151">
        <property type="entry name" value="Sensor-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02743">
        <property type="entry name" value="dCache_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103190">
        <property type="entry name" value="SSF103190"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="312"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="7">
        <location>
            <begin position="334"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="378"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO21167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="378" mass="41956" checksum="0F85A944FC929CE0" modified="2015-11-11" version="1" fragment="single">MYISIKNRIIFLLIVFTLLPFVVLRIIAYPRIQSDLQEVLIRNLDGIGHKQAELVTTWMHERMKNARVIANNPLMIRSARIATDDRDYPDIVQYLEVARGEYGYKGVFVCNDSGVITVGTAGEAVGADVSRMDYFRHAIQGNTSASSIIPSEVPLTNELGEKELGLPTMFVSTPLKDRDGVVIGVVAIRVDANVLNDLMLSLNLGKTGETYLVNKDGYMITESRFATHLKEMGLVKKRCALELKLVTPETGDLTNGVKQCIAGNNGFDAKGYKDYSGLTVLGVWRWLPEFNWGIIAEIDRDEGYGAAYNLKYIVSSVLLVIAFPIVIVAYFIGRKTSIPILKLREVTEKMAAGDLTHRVDIKREDEIGGLANSFNTMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZE7</accession>
    <name>A0A0M2UZE7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pyridine nucleotide-disulfide oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01413</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the NADH dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000146">
        <property type="protein sequence ID" value="KKO19854.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19854">
        <property type="protein sequence ID" value="KKO19854"/>
        <property type="gene ID" value="BROFUL_01413"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003954">
        <property type="term" value="F:NADH dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006116">
        <property type="term" value="P:NADH oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045024">
        <property type="entry name" value="NDH-2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43706">
        <property type="entry name" value="PTHR43706"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="2">
        <location>
            <begin position="6"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19854.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="402" mass="44631" checksum="EEF35E2FEE2D7409" modified="2015-11-11" version="1">MEIKKNIVVMGAGYGGITAALRLARLFRQHPEYQIHLVDRNPYHTLKTQLHEAAVRKTAISIPIDRIIQRQKIIFHLGEVTRIDSLEHIVHMESKSLPFNYLIIALGSQVNFYNIPGLQENSFPLQTLRDAHLIFDYISQLCKHAASEPVEGRRRDMLRFVIGGGGLSGVEFAAELADHATQCVRNTHVNPQDVEIIIVESGSHIVPRMDESFATRIHKKLLEKGIKIIPKAKIIGRTPDTATLSSGEVLKTQTLIWTGGIRISELARESGLKIGQSGRIVVDEFLRADGLPFIYAIGDNALAINPITGQPVPTAAQFALQQGRLVAHNIYADIFGGMRIPYHPKVLGEVVSLGRHLAVGWLALPFLKKITFVGFLGSLLKTAVQEKHLFLLRKESGKWIAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZG9</accession>
    <name>A0A0M2UZG9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Translation initiation factor IF-3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01402</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the IF-3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000145">
        <property type="protein sequence ID" value="KKO19889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19889">
        <property type="protein sequence ID" value="KKO19889"/>
        <property type="gene ID" value="BROFUL_01402"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1728"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036788">
        <property type="entry name" value="T_IF-3_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036787">
        <property type="entry name" value="T_IF-3_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001288">
        <property type="entry name" value="Translation_initiation_fac_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019815">
        <property type="entry name" value="Translation_initiation_fac_3_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019814">
        <property type="entry name" value="Translation_initiation_fac_3_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10938">
        <property type="entry name" value="PTHR10938"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00707">
        <property type="entry name" value="IF3_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05198">
        <property type="entry name" value="IF3_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54364">
        <property type="entry name" value="SSF54364"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55200">
        <property type="entry name" value="SSF55200"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00168">
        <property type="entry name" value="infC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="3" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="IF3_N" evidence="5">
        <location>
            <begin position="2"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="domain" description="IF3_C" evidence="4">
        <location>
            <begin position="63"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF05198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="148" mass="16939" checksum="3F3E1372C03E964A" modified="2015-11-11" version="1">MIDENGVQVGVISKEEAIAKARSVELDLVEVAPDATPPVCRIMNYGKFKYKQKKKLHQKQHVVQLKELRLRPKTGDHDIQTKIRQARGFLENKDRVLISIMFKGRERAHTELGESILKQIADALEDIAKIEKDKISDERRMGIILSPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZN1</accession>
    <name>A0A0M2UZN1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">3-deoxy-D-manno-octulosonate 8-phosphate phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00851</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the KdsC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000105">
        <property type="protein sequence ID" value="KKO20426.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20426">
        <property type="protein sequence ID" value="KKO20426"/>
        <property type="gene ID" value="BROFUL_00851"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1076"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016788">
        <property type="term" value="F:hydrolase activity, acting on ester bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010023">
        <property type="entry name" value="KdsC_fam"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01670">
        <property type="entry name" value="KdsC-phosphatas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20426.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="108" mass="11878" checksum="B4F48DD7053FA780" modified="2015-11-11" version="1">MSNLIKNIKLVIIDVDGVLTDGAIYIDSQGIETKAFNVLDGTGISYLHRAGIKTAIISGRNCAAVTHRAKELGIEDVYQGARNKIDAYKQLREKYTLSDKEICYVGDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZW6</accession>
    <name>A0A0M2UZW6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01238</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000135">
        <property type="protein sequence ID" value="KKO20039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20039">
        <property type="protein sequence ID" value="KKO20039"/>
        <property type="gene ID" value="BROFUL_01238"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1534"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="315"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="467" mass="52038" checksum="28F3804C7A9209CD" modified="2015-11-11" version="1">MKYIRIALWMGIIGAIFPGNSFMRAYAQEQPQIPAPAVEVEVAEFALTDQPLEIWTFIDDYRLITGKTLHLTVQIMWKLGVTVNLEGMGKITFSPFTVENVTVGERQIFDNEHDYAVVTYALSLPSDVKTGIYSIPAFSLPYRNEVDKTEGMATSAPVAIKKVPIHVEGKVDRDVIAIGDRITYTLTIRHEKKVNLLWESIEKLNFSPFEVLQREIKKSAEGTTEKTLITYTLSLYELTGKKKAAEIPELTVLYYEESPSQSDAAKSGSTLIETQEVKTASIPVILNSLLKAVDVPLEGIKGPMSYSRKDVFSHGYLPMGAGILLFVFLGITTLRSLAGRWSPAAPKPAVETPRIALERLENTLASFQYTDDEAISRNAIHNINKALRTYAGMLIGISNEQAQSVTTSDFLKYDTQKQLPEEVSAIIQTVLKQLDELIFGRHLGKEPVDSMLQGVKEMIERTGLNMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V028</accession>
    <name>A0A0M2V028_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00684</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Skp family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20566.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20566">
        <property type="protein sequence ID" value="KKO20566"/>
        <property type="gene ID" value="BROFUL_00684"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.910.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005632">
        <property type="entry name" value="Chaperone_Skp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024930">
        <property type="entry name" value="Skp_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35089">
        <property type="entry name" value="PTHR35089"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03938">
        <property type="entry name" value="OmpH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00935">
        <property type="entry name" value="OmpH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111384">
        <property type="entry name" value="SSF111384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644322" evidence="3">
        <location>
            <begin position="38"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20566.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="218" mass="24877" checksum="0E63A253F9E44F16" modified="2015-11-11" version="1">MKPAKTIMKNRHLRKVVLCITTSCVCLCAGLLHPIQAKEPGAMASPAKGLKVGVVDLNTVFEKYEKRKAFDAQLKEQEKQCQKNITDRKKELVSLGEKIQLLDVGSEARKKNEETFEKKNMELESYAKFAEKSLTKKYKDYFESLYTEVCKEVEDIGKRDQYDLIIKKEEPELQSSGISELQFKVGIKTVLYNSDAVDITNRIIDNLNKRFSEGTKGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V033</accession>
    <name>A0A0M2V033_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 3 4">Single-stranded DNA-binding protein</fullName>
            <shortName evidence="2">SSB</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_00689</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="2">Homotetramer.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20571.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20571">
        <property type="protein sequence ID" value="KKO20571"/>
        <property type="gene ID" value="BROFUL_00689"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.876"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04496">
        <property type="entry name" value="SSB_OBF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00984">
        <property type="entry name" value="SSB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000424">
        <property type="entry name" value="Primosome_PriB/ssb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011344">
        <property type="entry name" value="ssDNA-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10302">
        <property type="entry name" value="PTHR10302"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00436">
        <property type="entry name" value="SSB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002070">
        <property type="entry name" value="SSB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00621">
        <property type="entry name" value="ssb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50935">
        <property type="entry name" value="SSB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="110"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR002070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000524"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20571.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="146" mass="16333" checksum="30BAA14384DE41F1" modified="2015-11-11" version="1">MASLNKVFLMGNLTRDPELRYTPAGLAVASFGIAINRAWTAKTGEQKEEVCYVDINIFGRRAEVVGEYFSKGSPIFIEGRLQFNQWETKDGQKRSTLRVVADNFQFIGGQAKRPAGETGASLKEGKQPEEIHDDVHLDINNEEIPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0P6</accession>
    <name>A0A0M2V0P6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00998</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000118">
        <property type="protein sequence ID" value="KKO20289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20289">
        <property type="protein sequence ID" value="KKO20289"/>
        <property type="gene ID" value="BROFUL_00998"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="36" mass="4133" checksum="B72639AAD5A9B525" modified="2015-11-11" version="1">MENIPVYLKLHCNDFAQRLSLAVIGIMIDPFQKAEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0V2</accession>
    <name>A0A0M2V0V2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Elongation factor 4</fullName>
            <shortName evidence="5">EF-4</shortName>
            <ecNumber evidence="5">3.6.5.n1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Ribosomal back-translocase LepA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">lepA</name>
        <name evidence="7" type="ORF">BROFUL_00488</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>GTP + H2O = GDP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:19669"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
            <dbReference type="EC" id="3.6.5.n1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Peripheral membrane protein</topology>
            <orientation evidence="5">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. LepA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.5.n1" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000066">
        <property type="protein sequence ID" value="KKO20786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20786">
        <property type="protein sequence ID" value="KKO20786"/>
        <property type="gene ID" value="BROFUL_00488"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.611"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045727">
        <property type="term" value="P:positive regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03709">
        <property type="entry name" value="lepA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.2570">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00071">
        <property type="entry name" value="LepA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006297">
        <property type="entry name" value="EF-4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041095">
        <property type="entry name" value="EFG_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035647">
        <property type="entry name" value="EFG_III/V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000640">
        <property type="entry name" value="EFG_V-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004161">
        <property type="entry name" value="EFTu-like_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038363">
        <property type="entry name" value="LepA_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013842">
        <property type="entry name" value="LepA_CTD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035654">
        <property type="entry name" value="LepA_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43512">
        <property type="entry name" value="PTHR43512"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00679">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14492">
        <property type="entry name" value="EFG_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03144">
        <property type="entry name" value="GTP_EFTU_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06421">
        <property type="entry name" value="LepA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00838">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54980">
        <property type="entry name" value="SSF54980"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01393">
        <property type="entry name" value="lepA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="6">
        <location>
            <begin position="4"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="16"/>
            <end position="21"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="132"/>
            <end position="135"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="598" mass="67007" checksum="21067B2B84B2E82B" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0V5</accession>
    <name>A0A0M2V0V5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Glutamate 5-kinase</fullName>
            <ecNumber evidence="8">2.7.2.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Gamma-glutamyl kinase</fullName>
            <shortName evidence="8">GK</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">proB</name>
        <name evidence="10" type="ORF">BROFUL_00481</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>ATP + L-glutamate = ADP + L-glutamyl 5-phosphate</text>
            <dbReference type="Rhea" id="RHEA:14877"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58274"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.2.11"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="8">Amino-acid biosynthesis; L-proline biosynthesis; L-glutamate 5-semialdehyde from L-glutamate: step 1/2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the glutamate 5-kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.2.11" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000065">
        <property type="protein sequence ID" value="KKO20791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20791">
        <property type="protein sequence ID" value="KKO20791"/>
        <property type="gene ID" value="BROFUL_00481"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.603"/>
    <dbReference type="UniPathway" id="UPA00098">
        <property type="reaction ID" value="UER00359"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004349">
        <property type="term" value="F:glutamate 5-kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055129">
        <property type="term" value="P:L-proline biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04242">
        <property type="entry name" value="AAK_G5K_ProB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1160.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00456">
        <property type="entry name" value="ProB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036393">
        <property type="entry name" value="AceGlu_kinase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001048">
        <property type="entry name" value="Asp/Glu/Uridylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041739">
        <property type="entry name" value="G5K_ProB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001057">
        <property type="entry name" value="Glu/AcGlu_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011529">
        <property type="entry name" value="Glu_5kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005715">
        <property type="entry name" value="Glu_5kinase/COase_Synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019797">
        <property type="entry name" value="Glutamate_5-kinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002478">
        <property type="entry name" value="PUA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036974">
        <property type="entry name" value="PUA_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00696">
        <property type="entry name" value="AA_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01472">
        <property type="entry name" value="PUA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000729">
        <property type="entry name" value="GK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00474">
        <property type="entry name" value="GLU5KINASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00359">
        <property type="entry name" value="PUA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53633">
        <property type="entry name" value="SSF53633"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="SSF88697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01027">
        <property type="entry name" value="proB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00902">
        <property type="entry name" value="GLUTAMATE_5_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="5 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3 8" id="KW-0641">Proline biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PUA" evidence="9">
        <location>
            <begin position="288"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="21"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="61"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="148"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="160"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022650"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00359"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO20791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="380" mass="41495" checksum="898C1B0392329773" modified="2015-11-11" version="1">MESKEDIRRQILSRVKKIVVKIGTGVLTNDDGYLDKEQIRNLAGQAVELNKMGYHVVVVSSGAIGSGMGELGIEKRPATLPELQAVAAVGQSKLISMYDDCFKVHGYHAAQILLTREDFEDRQRYLNTCNTIHTLFQLKAIPVVNENDTISVDEIKFGDNDALSALVTNLLNAELLIILSSVDGLYDAFPAGKSKPSVIPLVENVSDEIRQLAFDFKTKRGIGGMQTKLEAASVVTNAGEAVIIANGRATGVLKKIVQGKPLGTLFLPKEEKMTSRKRWIGYTIKPKGKIYVDDGAIHALREKGKSLLASGVVSVEGTFHKGDIISICGKENGTVIARGLVNYSSKEIERIKGCSTSHIVKLLGYKSYDEVIHRNNMVIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V224</accession>
    <name>A0A0M2V224_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Two-component sensor kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00526</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000073">
        <property type="protein sequence ID" value="KKO20744.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20744">
        <property type="protein sequence ID" value="KKO20744"/>
        <property type="gene ID" value="BROFUL_00526"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013656">
        <property type="entry name" value="PAS_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01590">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08448">
        <property type="entry name" value="PAS_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00065">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PAC" evidence="3">
        <location>
            <begin position="82"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="2">
        <location>
            <begin position="362"/>
            <end position="569"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20744.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="579" mass="65286" checksum="E155B9EFF97259B9" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V252</accession>
    <name>A0A0M2V252_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative multiheme cytochrome c protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00479</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000064">
        <property type="protein sequence ID" value="KKO20794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20794">
        <property type="protein sequence ID" value="KKO20794"/>
        <property type="gene ID" value="BROFUL_00479"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029467">
        <property type="entry name" value="Cyt_c7-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036280">
        <property type="entry name" value="Multihaem_cyt_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14522">
        <property type="entry name" value="Cytochrome_C7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48695">
        <property type="entry name" value="SSF48695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644189" evidence="1">
        <location>
            <begin position="21"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome_C7" evidence="2">
        <location>
            <begin position="103"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14522"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="340" mass="39011" checksum="DA28899D9DE79B6F" modified="2015-11-11" version="1">MKKFCYLISTIALVALTMLGGCKESEIHFSHGRHSERGLKDCNMCHAYKADLEPGWPKMATCLTCHMKNFDTSNPQSCLLCHTEPGTEIKVKHDIPKKYRDLKFTHKAHLENNVACNECHAGIETSDAITPDLIPDMYGTCIPCHKKRGEEKIACDVCHKHIKKNRMPLYHEDRWVNHDDPRWIAKHGNEFYYNQKYCERCHNDNSWCIDCHQDQKPRNHTNSWRRKTHGFAASWERKKCSVCHQEDFCVRCHESTTPLSHNASWGGVNTRNRHCLNCHFPISMVNCRVCHPTPIHPSAMDSPHPPFNNMSCSACHPPSKAGEPPHPKPMGIACTVCHNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V269</accession>
    <name>A0A0M2V269_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Aspartate--tRNA(Asp/Asn) ligase</fullName>
            <ecNumber evidence="7">6.1.1.23</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Aspartyl-tRNA synthetase</fullName>
            <shortName evidence="7">AspRS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Non-discriminating aspartyl-tRNA synthetase</fullName>
            <shortName evidence="7">ND-AspRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">aspS</name>
        <name evidence="9" type="ORF">BROFUL_00448</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ATP + L-aspartate + tRNA(Asx) = AMP + diphosphate + L-aspartyl-tRNA(Asx)</text>
            <dbReference type="Rhea" id="RHEA:18349"/>
            <dbReference type="Rhea" id="RHEA-COMP:9710"/>
            <dbReference type="Rhea" id="RHEA-COMP:9711"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78516"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.23"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.23" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000059">
        <property type="protein sequence ID" value="KKO20819.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20819">
        <property type="protein sequence ID" value="KKO20819"/>
        <property type="gene ID" value="BROFUL_00448"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.561"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004815">
        <property type="term" value="F:aspartate-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050560">
        <property type="term" value="F:aspartate-tRNA(Asn) ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006422">
        <property type="term" value="P:aspartyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00044">
        <property type="entry name" value="Asp_tRNA_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004364">
        <property type="entry name" value="Aa-tRNA-synt_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004524">
        <property type="entry name" value="Asp-tRNA-ligase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002312">
        <property type="entry name" value="Asp/Asn-tRNA-synth_IIb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004115">
        <property type="entry name" value="GAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029351">
        <property type="entry name" value="GAD_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004365">
        <property type="entry name" value="NA-bd_OB_tRNA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22594:SF5">
        <property type="entry name" value="PTHR22594:SF5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02938">
        <property type="entry name" value="GAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00152">
        <property type="entry name" value="tRNA-synt_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01336">
        <property type="entry name" value="tRNA_anti-codon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01042">
        <property type="entry name" value="TRNASYNTHASP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55261">
        <property type="entry name" value="SSF55261"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00459">
        <property type="entry name" value="aspS_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="4 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 7" id="KW-0436">Ligase</keyword>
    <keyword evidence="3 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 7" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AA_TRNA_LIGASE_II" evidence="8">
        <location>
            <begin position="148"/>
            <end position="558"/>
        </location>
    </feature>
    <feature type="region of interest" description="Aspartate" evidence="7">
        <location>
            <begin position="202"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="178"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="224"/>
            <end position="226"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="224"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="233"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="451"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="485"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="492"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="537"/>
            <end position="540"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="site" description="Important for tRNA non-discrimination" evidence="7">
        <location>
            <position position="34"/>
        </location>
    </feature>
    <feature type="site" description="Important for tRNA non-discrimination" evidence="7">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20819.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="588" mass="66269" checksum="A45C17F1814F7F3E" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2P6</accession>
    <name>A0A0M2V2P6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF3656 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00304</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000035">
        <property type="protein sequence ID" value="KKO20969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20969">
        <property type="protein sequence ID" value="KKO20969"/>
        <property type="gene ID" value="BROFUL_00304"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.372"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071704">
        <property type="term" value="P:organic substance metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020988">
        <property type="entry name" value="Pept_U32_collagenase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001539">
        <property type="entry name" value="Peptidase_U32"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12392">
        <property type="entry name" value="DUF3656"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01136">
        <property type="entry name" value="Peptidase_U32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF3656" evidence="1">
        <location>
            <begin position="378"/>
            <end position="492"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="836" mass="94545" checksum="994BC4ED74B836BB" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPL4</accession>
    <name>A0A0M2UPL4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Two-component sensor kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03257</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000298">
        <property type="protein sequence ID" value="KKO18058.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18058">
        <property type="protein sequence ID" value="KKO18058"/>
        <property type="gene ID" value="BROFUL_03257"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4014"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="39"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="76"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="110"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="148"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="179"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="211"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="244"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="273"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="3">
        <location>
            <begin position="490"/>
            <end position="698"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18058.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="704" mass="80297" checksum="3E1ED222DB5F24A3" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPX7</accession>
    <name>A0A0M2UPX7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC-type transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_03398</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the MlaE permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17947">
        <property type="protein sequence ID" value="KKO17947"/>
        <property type="gene ID" value="BROFUL_03398"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4176"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003453">
        <property type="entry name" value="ABC_MlaE_Proteobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030802">
        <property type="entry name" value="Permease_MalE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30188">
        <property type="entry name" value="PTHR30188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02405">
        <property type="entry name" value="MlaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00056">
        <property type="entry name" value="TIGR00056"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="54"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="146"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="196"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="231"/>
            <end position="257"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU362044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO17947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="258" mass="27221" checksum="60B42AC1BBCF3C21" modified="2015-11-11" version="1">MRILLSIDAAGKKGILLVGQMSLLAAKGFAGIFIPPFNLKLVLREIDNFGAGSLFLVDLIALFTGMVMALQTIYGLRMYGAEIYVGSVVSLSLVRELGPVMASIMVGARVGSGIAAEIGAMQVTEQIDAMRALGASPVKKLVSPKILAGMITLPLLTVTADIVGIFGGMIVALYELEIDRTFYIDSVLTTITISDLLSGIGKTVIFGVLVSVIGCYFGLRTTGGTTGVGRSTTVTVVTISILILISDFFLTKLFLILF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ00</accession>
    <name>A0A0M2UQ00_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03339</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000306">
        <property type="protein sequence ID" value="KKO17967.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17967">
        <property type="protein sequence ID" value="KKO17967"/>
        <property type="gene ID" value="BROFUL_03339"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4112"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006158">
        <property type="entry name" value="Cobalamin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034466">
        <property type="entry name" value="Methyltransferase_Class_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02310">
        <property type="entry name" value="B12-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01123">
        <property type="entry name" value="methyltransferase_(Class_B)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="B12-binding" evidence="2">
        <location>
            <begin position="24"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="3">
        <location>
            <begin position="205"/>
            <end position="434"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO17967.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="481" mass="55088" checksum="59BEDE4D56067112" modified="2015-11-11" version="1">MRLEKAFLFNPPVGLYQRGEDRCQAEVEGSSAISLRPPNDLGYVASMLRQIGVAPFIADYPAEGKSWEHFEKDFQTVQPDFVVMSITTPTINDDMKAFSLIKAWNTRILTIAKGAHFSTCNKDDLKEAVYDPLDVAIFGEAETIVNNLVCAKRQGTDLTRVRGILFRDSCGRIIQTAPESFWTDLDTIPFPARDLMKNNLYTRPDTGEPQATIQTSRGCPSQCIFCLSPLISGVNVRERSVGNIVAELEECVYQHNIRNFFFRADTFTLRKSSVIELCQEIIRRKLPIAWVANSRVNTIDEERLLWMKKAGCWLVAFGIESGNDEIQRLIKKGTTRAQAIEAVRMCKKAGLKTYGFYLIGFPWETREMIMDTLYLARELRCTFSEIHIAIPYEGTELYRIARDYGILKESAVGHNYFSNPATDTMHVSRKELINMRKKALRSLYLNPGYITRTLMQVRSFKEMRNYTRYGVRLVKNLIRHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQN8</accession>
    <name>A0A0M2UQN8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03135</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000287">
        <property type="protein sequence ID" value="KKO18182.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18182">
        <property type="protein sequence ID" value="KKO18182"/>
        <property type="gene ID" value="BROFUL_03135"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18182.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="45" mass="5377" checksum="88E5E247711D69F6" modified="2015-11-11" version="1">MDILLQHLENNPDKIRQESLSNAVVYRNLGILRLDVMEIRGKWER</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR28</accession>
    <name>A0A0M2UR28_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02758</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000259">
        <property type="protein sequence ID" value="KKO18543.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18543">
        <property type="protein sequence ID" value="KKO18543"/>
        <property type="gene ID" value="BROFUL_02758"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18543.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="313" mass="34287" checksum="6F370CAA603E030C" modified="2015-11-11" version="1">MLTGRRHNHYFACIILFAFILLINEASSYAHHGGVSTAFGPGAPIETASPLALGKGNFLLYEKFEYVPFEHKDHADPENIDTFTFFNTLVGYGFTDAISVYAILPVAIKEQDSLGTSSGLGDLGFIFQYGFKYGERDGIRGLYGYGAEDSYGAEYSTDDLKMALQAGFTVPTGETSNRDNKGEIFDMGMQPGFDAPTFQFGFVASKMIFPHFTLTGDTSLTVFAEHNDGKPGNEIRLNAAGGYEIYEKKNGFLSRFDIIAESNLLHLTKDQDDENETDDATGGTILYLSPGLRATFGKHVSIGMLVKLQRGKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR48</accession>
    <name>A0A0M2UR48_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02731</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000254">
        <property type="protein sequence ID" value="KKO18563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18563">
        <property type="protein sequence ID" value="KKO18563"/>
        <property type="gene ID" value="BROFUL_02731"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644109" evidence="1">
        <location>
            <begin position="28"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="181" mass="20096" checksum="1E0CB12594506305" modified="2015-11-11" version="1">MLNTRCCKKIVLLLVFFFIGSLPVVSAHEGHSHEAVITIGKKTVVHLQTILSTYQDVHTHLVKKDLDGISGLAQKMSDAARQAIQTESNGAGRHMMEHVLAGAEDLQKAKSIQDAQKSFASISDGLLPFFKSWPNQLKRNELKMYKCKHDGHCWLQSQNCASACPHNADQTTVCTEIEEIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URJ0</accession>
    <name>A0A0M2URJ0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Chaperonin GroEL</fullName>
            <ecNumber evidence="6">5.6.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">60 kDa chaperonin</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Chaperonin-60</fullName>
            <shortName evidence="6">Cpn60</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">groEL</name>
        <name evidence="6" type="synonym">groL</name>
        <name evidence="9" type="ORF">BROFUL_02806</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 8">Together with its co-chaperonin GroES, plays an essential role in assisting protein folding. The GroEL-GroES system forms a nano-cage that allows encapsulation of the non-native substrate proteins and provides a physical environment optimized to promote and accelerate protein folding.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6 8">Forms a cylinder of 14 subunits composed of two heptameric rings stacked back-to-back. Interacts with the co-chaperonin GroES.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the chaperonin (HSP60) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.1.7" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000265">
        <property type="protein sequence ID" value="KKO18482.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18482">
        <property type="protein sequence ID" value="KKO18482"/>
        <property type="gene ID" value="BROFUL_02806"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3470"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042026">
        <property type="term" value="P:protein refolding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03344">
        <property type="entry name" value="GroEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.7.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00600">
        <property type="entry name" value="CH60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018370">
        <property type="entry name" value="Chaperonin_Cpn60_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001844">
        <property type="entry name" value="Cpn60/GroEL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002423">
        <property type="entry name" value="Cpn60/GroEL/TCP-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027409">
        <property type="entry name" value="GroEL-like_apical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027413">
        <property type="entry name" value="GROEL-like_equatorial_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027410">
        <property type="entry name" value="TCP-1-like_intermed_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00118">
        <property type="entry name" value="Cpn60_TCP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00298">
        <property type="entry name" value="CHAPERONIN60"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48592">
        <property type="entry name" value="SSF48592"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52029">
        <property type="entry name" value="SSF52029"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02348">
        <property type="entry name" value="GroEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00296">
        <property type="entry name" value="CHAPERONINS_CPN60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6" id="KW-0143">Chaperone</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="30"/>
            <end position="33"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="51"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="87"/>
            <end position="91"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="415"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="494"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006607"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00600"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000419"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18482.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="545" mass="58317" checksum="1A49F3C0208DEC78" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URN7</accession>
    <name>A0A0M2URN7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Signal recognition particle protein</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Fifty-four homolog</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">ffh</name>
        <name evidence="10" type="ORF">BROFUL_03032</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Part of the signal recognition particle protein translocation system, which is composed of SRP and FtsY.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="7">The SRP-RNC complex is targeted to the cytoplasmic membrane.</text>
    </comment>
    <comment type="domain">
        <text evidence="7">Composed of three domains: the N-terminal N domain, which is responsible for interactions with the ribosome, the central G domain, which binds GTP, and the C-terminal M domain, which binds the RNA and the signal sequence of the RNC.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the GTP-binding SRP family. SRP54 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18305.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18305">
        <property type="protein sequence ID" value="KKO18305"/>
        <property type="gene ID" value="BROFUL_03032"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3743"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048500">
        <property type="term" value="C:signal recognition particle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008312">
        <property type="term" value="F:7S RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006614">
        <property type="term" value="P:SRP-dependent cotranslational protein targeting to membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00306">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036891">
        <property type="entry name" value="Signal_recog_part_SRP54_M_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013822">
        <property type="entry name" value="Signal_recog_particl_SRP54_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004125">
        <property type="entry name" value="Signal_recog_particle_SRP54_M"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004780">
        <property type="entry name" value="SRP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022941">
        <property type="entry name" value="SRP54"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000897">
        <property type="entry name" value="SRP54_GTPase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042101">
        <property type="entry name" value="SRP54_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11564">
        <property type="entry name" value="PTHR11564"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11564:SF7">
        <property type="entry name" value="PTHR11564:SF7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00448">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02881">
        <property type="entry name" value="SRP54_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02978">
        <property type="entry name" value="SRP_SPB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00962">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00963">
        <property type="entry name" value="SRP54_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47446">
        <property type="entry name" value="SSF47446"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00959">
        <property type="entry name" value="ffh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00300">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 7" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="2 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5 7" id="KW-0733">Signal recognition particle</keyword>
    <feature type="domain" description="SRP54" evidence="9">
        <location>
            <begin position="267"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="382"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="107"/>
            <end position="114"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="188"/>
            <end position="192"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="246"/>
            <end position="249"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS00300"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO18305.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="450" mass="49580" checksum="9AB398806B71DCFC" modified="2015-11-11" version="1">MFEAIANSLEGVFSKLRGKGRLTESNIKDGLHEVRLALLEADVNYKVVKDFIQHVTERAVGEEVIKSIAPGQQIIKIVHDELIKLMGESDTAIPFQDSEPTTIMLVGLQGSGKTTTAGKLAKTILSKGRKPLLVAADIQRPAAIEQLKILGQQLDVPVYFESAAQPAKICKNAVAHARTNAQDVVIFDTAGRLHIDDELMLELQEIKQNLGPHQIYFVCDSMTGQDAVNSAKEFNTKLGFHGVILTKLDGDTRGGAALSIRAVTGRPIKFVGIGEKLDRLEEFHPDRMASRILGMGDVVSLVERAQQAIDMEEAQKLSRKIQNDTLSLDDFLMQLQQIKKMGPIKEILGMIPGLGNKMDGLNVDEKQLHRVEAIIRSMTTEERASPDMVNGSRRQRVANGSGTTIQDVNQLLKQFRAMKKMIKQFKGNERGLKKMGLLSKGLPFGKGMLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URY0</accession>
    <name>A0A0M2URY0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02906</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18400">
        <property type="protein sequence ID" value="KKO18400"/>
        <property type="gene ID" value="BROFUL_02906"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="164" mass="18038" checksum="9F3668132A288F1F" modified="2015-11-11" version="1">MIYQRLTSETASVGSKPHFSGRNLKDLSTIGRCVLKVGINKDCIPKMGALQVGVMQAVAAEIAAFQSDTTEDGNSVWIRFSPGIPCIPCLHEQGKMLLVGHDRNCLLLTSTLIGGEHQFKFLCRLSQGFPYLVKEAVAFFDLVFEYQLNNEDLANLFNELIGVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URY3</accession>
    <name>A0A0M2URY3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">FAD:protein FMN transferase</fullName>
            <ecNumber evidence="3">2.7.1.180</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Flavin transferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_02911</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>FAD + L-threonyl-[protein] = AMP + FMN-L-threonyl-[protein] + H(+)</text>
            <dbReference type="Rhea" id="RHEA:36847"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11061"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
            <dbReference type="ChEBI" id="CHEBI:74257"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.7.1.180"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.180" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18405">
        <property type="protein sequence ID" value="KKO18405"/>
        <property type="gene ID" value="BROFUL_02911"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017013">
        <property type="term" value="P:protein flavinylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.520.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024932">
        <property type="entry name" value="ApbE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003374">
        <property type="entry name" value="ApbE-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007329">
        <property type="entry name" value="FMN-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30040">
        <property type="entry name" value="PTHR30040"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02424">
        <property type="entry name" value="ApbE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04205">
        <property type="entry name" value="FMN_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143631">
        <property type="entry name" value="SSF143631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="11" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="FMN_bind" evidence="10">
        <location>
            <begin position="119"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001219"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011955"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00016337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00031306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF04205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO18405.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="548" mass="61506" checksum="3202276B88AF0604" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URZ3</accession>
    <name>A0A0M2URZ3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Apolipoprotein N-acyltransferase</fullName>
            <shortName evidence="8">ALP N-acyltransferase</shortName>
            <ecNumber evidence="8">2.3.1.269</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">lnt</name>
        <name evidence="10" type="ORF">BROFUL_02692</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the phospholipid dependent N-acylation of the N-terminal cysteine of apolipoprotein, the last step in lipoprotein maturation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>a glycerophospholipid + N-terminal S-1,2-diacyl-sn-glyceryl-L-cysteinyl-[lipoprotein] = a 2-acyl-sn-glycero-3-phospholipid + H(+) + N-acyl-S-1,2-diacyl-sn-glyceryl-L-cysteinyl-[lipoprotein]</text>
            <dbReference type="Rhea" id="RHEA:48228"/>
            <dbReference type="Rhea" id="RHEA-COMP:14681"/>
            <dbReference type="Rhea" id="RHEA-COMP:14684"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:136912"/>
            <dbReference type="ChEBI" id="CHEBI:140656"/>
            <dbReference type="ChEBI" id="CHEBI:140657"/>
            <dbReference type="ChEBI" id="CHEBI:140660"/>
            <dbReference type="EC" id="2.3.1.269"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="8">Protein modification; lipoprotein biosynthesis (N-acyl transfer).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the CN hydrolase family. Apolipoprotein N-acyltransferase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.269" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000248">
        <property type="protein sequence ID" value="KKO18607.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18607">
        <property type="protein sequence ID" value="KKO18607"/>
        <property type="gene ID" value="BROFUL_02692"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3329"/>
    <dbReference type="UniPathway" id="UPA00666"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016410">
        <property type="term" value="F:N-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042158">
        <property type="term" value="P:lipoprotein biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07571">
        <property type="entry name" value="ALP_N-acyl_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01148">
        <property type="entry name" value="Lnt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004563">
        <property type="entry name" value="Apolipo_AcylTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003010">
        <property type="entry name" value="C-N_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036526">
        <property type="entry name" value="C-N_Hydrolase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045378">
        <property type="entry name" value="LNT_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00795">
        <property type="entry name" value="CN_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20154">
        <property type="entry name" value="LNT_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56317">
        <property type="entry name" value="SSF56317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00546">
        <property type="entry name" value="lnt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50263">
        <property type="entry name" value="CN_HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8 10" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="2 8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8 10" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="51"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="75"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="107"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="153"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="181"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="491"/>
            <end position="516"/>
        </location>
    </feature>
    <feature type="domain" description="CN hydrolase" evidence="9">
        <location>
            <begin position="219"/>
            <end position="484"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01148"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO18607.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="531" mass="59718" checksum="CB904D10AB077153" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US12</accession>
    <name>A0A0M2US12_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Rieske domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_02869</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000270">
        <property type="protein sequence ID" value="KKO18435.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18435">
        <property type="protein sequence ID" value="KKO18435"/>
        <property type="gene ID" value="BROFUL_02869"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.102.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017941">
        <property type="entry name" value="Rieske_2Fe-2S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036922">
        <property type="entry name" value="Rieske_2Fe-2S_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014349">
        <property type="entry name" value="Rieske_Fe-S_prot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005805">
        <property type="entry name" value="Rieske_Fe-S_prot_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10134">
        <property type="entry name" value="PTHR10134"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00355">
        <property type="entry name" value="Rieske"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00162">
        <property type="entry name" value="RIESKE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50022">
        <property type="entry name" value="SSF50022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51296">
        <property type="entry name" value="RIESKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="27"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="domain" description="Rieske" evidence="8">
        <location>
            <begin position="69"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18435.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="172" mass="19332" checksum="81F670B33D4DC160" modified="2015-11-11" version="1">MERKEEKKGFSSEKEGGIWFTFSRRNLLTLAGWGLFFASIGAYLSQIMGYKGFFYPKVLFEPSPRFSVGDPKAFSENSVTTLKSRKIFVVRDGNSFKAISVVCQHLGCAVEFSKEKNIFECPCHGSKYYRNGVNFAGPAPRPLNHFEIILDDSGRLVVDTSKIVPLETELVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US47</accession>
    <name>A0A0M2US47_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Peptide methionine sulfoxide reductase MsrA</fullName>
            <shortName evidence="4">Protein-methionine-S-oxide reductase</shortName>
            <ecNumber evidence="4">1.8.4.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Peptide-methionine (S)-S-oxide reductase</fullName>
            <shortName evidence="4">Peptide Met(O) reductase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">msrA</name>
        <name evidence="8" type="ORF">BROFUL_02399</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 4">
            <text>[thioredoxin]-disulfide + H2O + L-methionine = [thioredoxin]-dithiol + L-methionine (S)-S-oxide</text>
            <dbReference type="Rhea" id="RHEA:19993"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:58772"/>
            <dbReference type="EC" id="1.8.4.11"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 4">
            <text>[thioredoxin]-disulfide + H2O + L-methionyl-[protein] = [thioredoxin]-dithiol + L-methionyl-(S)-S-oxide-[protein]</text>
            <dbReference type="Rhea" id="RHEA:14217"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="Rhea" id="RHEA-COMP:12313"/>
            <dbReference type="Rhea" id="RHEA-COMP:12315"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16044"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:44120"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="EC" id="1.8.4.11"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the MsrA Met sulfoxide reductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.8.4.11" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000229">
        <property type="protein sequence ID" value="KKO18898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18898">
        <property type="protein sequence ID" value="KKO18898"/>
        <property type="gene ID" value="BROFUL_02399"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2979"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033744">
        <property type="term" value="F:L-methionine:thioredoxin-disulfide S-oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008113">
        <property type="term" value="F:peptide-methionine (S)-S-oxide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1060.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01401">
        <property type="entry name" value="MsrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002569">
        <property type="entry name" value="Met_Sox_Rdtase_MsrA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036509">
        <property type="entry name" value="Met_Sox_Rdtase_MsrA_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01625">
        <property type="entry name" value="PMSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55068">
        <property type="entry name" value="SSF55068"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00401">
        <property type="entry name" value="msrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644137" description="Peptide methionine sulfoxide reductase MsrA" evidence="6">
        <location>
            <begin position="24"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="domain" description="PMSR" evidence="7">
        <location>
            <begin position="40"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="212"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="active site" evidence="4">
        <location>
            <position position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001497"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01401"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01625"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="233" mass="26482" checksum="FEE867F4182722B2" modified="2015-11-11" version="1">MFIHALLKSLLLGSLTLSGVFMVTEEKNQPATPPQSKEIVTLGGGCFWCIEAFFDELEGVECVESGYSGGRVDNPTYQQVCTGTTGYAEVVQITFDPTIVSFREILEVFFTMHDPTTLNRQGADVGTQYRSVIFYRNQEQKSVAEQVVREVQTAHLWDAPVVTEIAPFKAFYKGEDYHQDYYKLNPSQGYCRVVITPKIKKFREHFRKKLKKRNLEIPNPNGSEMTQSETRDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USE9</accession>
    <name>A0A0M2USE9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Metallophos domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02542</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18762">
        <property type="protein sequence ID" value="KKO18762"/>
        <property type="gene ID" value="BROFUL_02542"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004843">
        <property type="entry name" value="Calcineurin-like_PHP_ApaH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00149">
        <property type="entry name" value="Metallophos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="domain" description="Metallophos" evidence="2">
        <location>
            <begin position="52"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="282" mass="31951" checksum="198D8B61632B1D4A" modified="2015-11-11" version="1">MISRRTFVLGTLGYGFGFVTLGGYSRWLEPRWVETNHVPIKIHALPKQFEGMTIAQLSDIHHCKYVPRDFIRRCVQKANALCPDVIVLTGDYVYRSRAFIASVAEELSALRAKEGVFAVLGNHDDKDQTFHALSKAGIRVLINEHVPLYRKNDYLFIAGVDDLWRGRVDFRRTLKGTDDKPKLLLAHNPDTIEMAEAREIHFMMAGHTHGGQISVPLYGPPVVYSRFGYIAGLFHKGNTTMYVNKGIGISGLPVRFLARPEITLFTLRSEEVKDAQHQKRQC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USM9</accession>
    <name>A0A0M2USM9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">cheA</name>
        <name evidence="7" type="ORF">BROFUL_02208</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000221">
        <property type="protein sequence ID" value="KKO19073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19073">
        <property type="protein sequence ID" value="KKO19073"/>
        <property type="gene ID" value="BROFUL_02208"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2759"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00088">
        <property type="entry name" value="HPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.560">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004105">
        <property type="entry name" value="CheA-like_dim"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037006">
        <property type="entry name" value="CheA-like_homodim_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036061">
        <property type="entry name" value="CheW-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002545">
        <property type="entry name" value="CheW-lke_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036641">
        <property type="entry name" value="HPT_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008207">
        <property type="entry name" value="Sig_transdc_His_kin_Hpt_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037257">
        <property type="entry name" value="T2SS_E_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01584">
        <property type="entry name" value="CheW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02895">
        <property type="entry name" value="H-kinase_dim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01627">
        <property type="entry name" value="Hpt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00260">
        <property type="entry name" value="CheW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01231">
        <property type="entry name" value="H-kinase_dim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00073">
        <property type="entry name" value="HPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160246">
        <property type="entry name" value="SSF160246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47226">
        <property type="entry name" value="SSF47226"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50341">
        <property type="entry name" value="SSF50341"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50851">
        <property type="entry name" value="CHEW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50894">
        <property type="entry name" value="HPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HPt" evidence="6">
        <location>
            <begin position="6"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="4">
        <location>
            <begin position="261"/>
            <end position="462"/>
        </location>
    </feature>
    <feature type="domain" description="CheW-like" evidence="5">
        <location>
            <begin position="464"/>
            <end position="599"/>
        </location>
    </feature>
    <feature type="modified residue" description="Phosphohistidine" evidence="3">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="599" mass="65989" checksum="E821AFB71A607545" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT38</accession>
    <name>A0A0M2UT38_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02067</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000208">
        <property type="protein sequence ID" value="KKO19223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19223">
        <property type="protein sequence ID" value="KKO19223"/>
        <property type="gene ID" value="BROFUL_02067"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="81" mass="9221" checksum="7792ABE7986C175A" modified="2015-11-11" version="1">MEQQGWEIARRYLTPEQLSELRNYIHARHEKYPKSVLVGNVRLAEYANIRAKSGTKKNIGSELIGILVFDPSAALIPQSVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTI4</accession>
    <name>A0A0M2UTI4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02317</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18925">
        <property type="protein sequence ID" value="KKO18925"/>
        <property type="gene ID" value="BROFUL_02317"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="26"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="204" mass="23458" checksum="D94AB0F52B010E73" modified="2015-11-11" version="1">MMSFKIKLLWVAIEPFVKKLKQWKHYLPIINLFLLLTVVCLAIICVLLVYYPPVITMKPEKEEENLSVKHTLLPSIKTETQPIDTYELIVSNNPFSPNRTGWAPLEVKREIKQREEEVVSPAEIQPKARGTPAKITLRGILILGTTKKALIENPDQTSNKKPFIFVGEGEEVAEYKVKTIESDRVKLDWYGEEQVVVMRSNIKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTP8</accession>
    <name>A0A0M2UTP8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">mRNA interferase</fullName>
            <ecNumber evidence="1">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02096</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Toxic component of a type II toxin-antitoxin (TA) system.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the PemK/MazF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="1"/>
    <dbReference type="EMBL" id="LAQJ01000210">
        <property type="protein sequence ID" value="KKO19187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19187">
        <property type="protein sequence ID" value="KKO19187"/>
        <property type="gene ID" value="BROFUL_02096"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003477">
        <property type="entry name" value="PemK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011067">
        <property type="entry name" value="Plasmid_toxin/cell-grow_inhib"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33988">
        <property type="entry name" value="PTHR33988"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02452">
        <property type="entry name" value="PemK_toxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF033490">
        <property type="entry name" value="MazF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR033490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="118" mass="13207" checksum="E1A50145D37677CE" modified="2015-11-11" version="1">MSFKSYQWHVFQANLNPVAGSEQRGTRPVLVVSDEDFNQLMPVVTVLPLTSRKPGRQVYPNEVLLPKGAAGLPEDSIVMAHQIRTISKTRLADLYGAIQNKTLRESIRQALKVHLSLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTT3</accession>
    <name>A0A0M2UTT3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02066</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000208">
        <property type="protein sequence ID" value="KKO19222.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19222">
        <property type="protein sequence ID" value="KKO19222"/>
        <property type="gene ID" value="BROFUL_02066"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="104"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19222.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="134" mass="15581" checksum="8C29FBA703596579" modified="2015-11-11" version="1">MFQMERFPVILRWQMEMLYNRMLQEPESQSFFEDISRFSKSTERFSQVVATLPDRIAEERKGIFHDLDGEISKINGLLGQLEQTATHVRKEGDAIVTRLFRSGVLLIVVFFVGLVISLVVYRLISQRIISASRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTW5</accession>
    <name>A0A0M2UTW5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02865</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000270">
        <property type="protein sequence ID" value="KKO18431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18431">
        <property type="protein sequence ID" value="KKO18431"/>
        <property type="gene ID" value="BROFUL_02865"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027396">
        <property type="entry name" value="DsrEFH-like"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="108" mass="12077" checksum="56DF6FA9FF4DC6D5" modified="2015-11-11" version="1">MGKETYIFLFFWALKRFVNEEFDPARLVGECGAEGEKLLKKMQALNPISLKELLHDVRAMGNLKVYACTGAVKLMELEEVVVKTKVDDILGLTTLLEIAAGAETQLFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTW6</accession>
    <name>A0A0M2UTW6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02231</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the peptidase S41A family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19050.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19050">
        <property type="protein sequence ID" value="KKO19050"/>
        <property type="gene ID" value="BROFUL_02231"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2786"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008236">
        <property type="term" value="F:serine-type peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd07560">
        <property type="entry name" value="Peptidase_S41_CPP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041489">
        <property type="entry name" value="PDZ_6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023831">
        <property type="entry name" value="Pept_41A_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004447">
        <property type="entry name" value="Peptidase_S41A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005151">
        <property type="entry name" value="Tail-specific_protease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17820">
        <property type="entry name" value="PDZ_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03572">
        <property type="entry name" value="Peptidase_S41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00228">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00245">
        <property type="entry name" value="TSPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="SSF50156"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00225">
        <property type="entry name" value="prc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03900">
        <property type="entry name" value="prc_long_Delta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50106">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0720">Serine protease</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644025" evidence="5">
        <location>
            <begin position="29"/>
            <end position="1008"/>
        </location>
    </feature>
    <feature type="domain" description="PDZ" evidence="6">
        <location>
            <begin position="185"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="498"/>
            <end position="518"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009179"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU004404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19050.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1008" mass="111016" checksum="381053E183DB3B26" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTX1</accession>
    <name>A0A0M2UTX1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02870</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000270">
        <property type="protein sequence ID" value="KKO18436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18436">
        <property type="protein sequence ID" value="KKO18436"/>
        <property type="gene ID" value="BROFUL_02870"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1060.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028261">
        <property type="entry name" value="DPD_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009051">
        <property type="entry name" value="Helical_ferredxn"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00037">
        <property type="entry name" value="Fer4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14691">
        <property type="entry name" value="Fer4_20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="492"/>
            <end position="521"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="535"/>
            <end position="564"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="581" mass="64303" checksum="7EE2FBFF4ABBC016" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUD9</accession>
    <name>A0A0M2UUD9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter permease component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_01595</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19663.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19663">
        <property type="protein sequence ID" value="KKO19663"/>
        <property type="gene ID" value="BROFUL_01595"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1974"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003838">
        <property type="entry name" value="ABC3_permease_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02687">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="254"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="301"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="354"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="domain" description="FtsX" evidence="7">
        <location>
            <begin position="288"/>
            <end position="373"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19663.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="385" mass="42927" checksum="7D4957DC9B5EE7BA" modified="2015-11-11" version="1">MHLFRIIFKNTFRHKLRASLTILGVTVVILAFGLLRTVVSAWYAGVEASSASRLVTRNSISLVFSLPISYKEKIRQIPGVKIVSYGNWFGGIYIDEKNFFANFAVEPKSYLELYPEYLLLPDQMAAFLRDRRAAIAGEKLAIKYGWELGDAITLKGTIFPGNWEFILRGIYRGRDKSTDETQFFFHWNYLNEMMKISAPRRADQTGFYLIGVDNPDLAEEVSVAVDHTFKNSLAETLTETEKAFQMSFVSMSEAIVVAIQLVSFVVIIIIMAVLANTMAMTARERIGEYAILKTLGFGARYLAALIFGESLFISLIGCTIGIACTFPIAKIFGAVMGTFFPVFHVATKTICLDIAASLLVGLVAAIIPTWRAIEIRIADGLRRMG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUH9</accession>
    <name>A0A0M2UUH9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pyruvate carboxyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01804</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000188">
        <property type="protein sequence ID" value="KKO19492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19492">
        <property type="protein sequence ID" value="KKO19492"/>
        <property type="gene ID" value="BROFUL_01804"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2243"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000891">
        <property type="entry name" value="PYR_CT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00682">
        <property type="entry name" value="HMGL-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50991">
        <property type="entry name" value="PYR_CT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pyruvate carboxyltransferase" evidence="1">
        <location>
            <begin position="56"/>
            <end position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="469" mass="53800" checksum="73F07F60EC8A585D" modified="2015-11-11" version="1">MFRFNKRRNTLEPEEYIFQLQDSPEPNLFRDVFPYNKIPKISFNYRLNPMNPPDEIWITDTTFRDGQQSRPPYTVKQIVDLYDLIHKLGGKNGLIRQCEFFLYNEKDQQAVRKCMERGYKYPEITGWIRAVKSDFKLVKEMGLKETGILCSSSDYHIYLKLNKTRKQAMDMYLDIVRAALEEGIIPRCHFEDITRSDFYGFVVPFAKELMKLSKESKLPVKIRACDTMGMGVSYPGAALPRSVPGIIYGLNHFAGVPSEYMEWHGHNDFYLAVSNATTAWLYGCSVINGTLLGLGERTGNTPIEALIIEYLALRGSDEQIDTTVITEIADYYRNEIGYPIPPTQPFVGSEFNVTRAGIHSDGLLKNEEIYNIFDTRKLLNRPLGVAVTDKSGVAGIAQWINIFFELKGDAQILKTHEGVTKIKEWVEKQYIEGRITSISDEEMVEQVRIYFRDSIKSDKLQTSGTNKTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUI1</accession>
    <name>A0A0M2UUI1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Tnp_DDE_dom domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02661</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000244">
        <property type="protein sequence ID" value="KKO18636.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18636">
        <property type="protein sequence ID" value="KKO18636"/>
        <property type="gene ID" value="BROFUL_02661"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025668">
        <property type="entry name" value="Tnp_DDE_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13751">
        <property type="entry name" value="DDE_Tnp_1_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tnp_DDE_dom" evidence="1">
        <location>
            <begin position="410"/>
            <end position="521"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13751"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18636.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="534" mass="61383" checksum="A857BFE86118B5A3" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUR5</accession>
    <name>A0A0M2UUR5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01728</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000180">
        <property type="protein sequence ID" value="KKO19557.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19557">
        <property type="protein sequence ID" value="KKO19557"/>
        <property type="gene ID" value="BROFUL_01728"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2141"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="170"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19557.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="206" mass="22960" checksum="FF52BDA5F85F385D" modified="2015-11-11" version="1">MLDVVIDEYGIRIGPRFSISFHRTLRIPDDGRVYPLPPGLGAFPLFKVDDYRDCIPHLWREQGGVFMPMYQREALWLGFNAAAWKPNAVKIYAGDVNAITGKPYTDGLHAGPQDYVVCPDQLWLDGINTGHGTIRQFVAMPLGLGYTIEAAITGEEKYGGLQVFVFEPKPGRFPEKPPPEPETGPVRFAHPERQMQLSPWGLAPGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUV3</accession>
    <name>A0A0M2UUV3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">ATPGencoding subunit gamma of ATP synthase</fullName>
            <ecNumber evidence="9">3.6.3.14</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">atpG</name>
        <name evidence="9" type="ORF">BROFUL_01699</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ATPase gamma chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.3.14" evidence="9"/>
    <dbReference type="EMBL" id="LAQJ01000176">
        <property type="protein sequence ID" value="KKO19592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19592">
        <property type="protein sequence ID" value="KKO19592"/>
        <property type="gene ID" value="BROFUL_01699"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045261">
        <property type="term" value="C:proton-transporting ATP synthase complex, catalytic core F(1)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035968">
        <property type="entry name" value="ATP_synth_F1_ATPase_gsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000131">
        <property type="entry name" value="ATP_synth_F1_gsu"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00231">
        <property type="entry name" value="ATP-synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52943">
        <property type="entry name" value="SSF52943"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="7" id="KW-0139">CF(1)</keyword>
    <keyword evidence="4" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0406">Ion transport</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007681"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="284" mass="32623" checksum="E24104B1EDA4C910" modified="2015-11-11" version="1">MFSSLDIEKKMRALYTIEDIVSAMKAYAGVTIRRTDDLVQNIRAYENNLLLAMADIITYYPEVSVKEQNKGKRILAAFGSSQGLCGSFNEKMVDVISRVVTGNDILFVIGKRLKLSLELKHITYGDDSDSVASINGIQSALKETVSKIMNIYRKDEYYNLTLVFTYIFEKKAEISVEQILPPDIRKVSVLSPTRIPPFTYLKPAIIFEKILEELLFISLYRGYMESLRSENWYRLRSMEGASEALKGSFRILLPCRCIPDRKKLRKKCLRYWEAGCFLRNSVTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUY3</accession>
    <name>A0A0M2UUY3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Methylthioribose-1-phosphate isomerase</fullName>
            <shortName evidence="2">M1Pi</shortName>
            <shortName evidence="2">MTR-1-P isomerase</shortName>
            <ecNumber evidence="2">5.3.1.23</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">S-methyl-5-thioribose-1-phosphate isomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">mtnA</name>
        <name evidence="3" type="ORF">BROFUL_02462</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>S-methyl-5-thio-alpha-D-ribose 1-phosphate = S-methyl-5-thio-D-ribulose 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:19989"/>
            <dbReference type="ChEBI" id="CHEBI:58533"/>
            <dbReference type="ChEBI" id="CHEBI:58548"/>
            <dbReference type="EC" id="5.3.1.23"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-methionine biosynthesis via salvage pathway; L-methionine from S-methyl-5-thio-alpha-D-ribose 1-phosphate: step 1/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the EIF-2B alpha/beta/delta subunits family. MtnA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.23" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18801.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18801">
        <property type="protein sequence ID" value="KKO18801"/>
        <property type="gene ID" value="BROFUL_02462"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3059"/>
    <dbReference type="UniPathway" id="UPA00904">
        <property type="reaction ID" value="UER00874"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046523">
        <property type="term" value="F:S-methyl-5-thioribose-1-phosphate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019509">
        <property type="term" value="P:L-methionine salvage from methylthioadenosine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019284">
        <property type="term" value="P:L-methionine salvage from S-adenosylmethionine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10470">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01678">
        <property type="entry name" value="Salvage_MtnA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000649">
        <property type="entry name" value="IF-2B-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005251">
        <property type="entry name" value="IF-M1Pi"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042529">
        <property type="entry name" value="IF_2B-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011559">
        <property type="entry name" value="Initiation_fac_2B_a/b/d"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027363">
        <property type="entry name" value="M1Pi_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01008">
        <property type="entry name" value="IF-2B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="SSF100950"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00524">
        <property type="entry name" value="eIF-2B_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00512">
        <property type="entry name" value="salvage_mtnA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="3" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="1 2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2" id="KW-0486">Methionine biosynthesis</keyword>
    <keyword evidence="3" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="49"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="250"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="2">
        <location>
            <position position="240"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="199"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="2">
        <location>
            <position position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01678"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18801.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="352" mass="38215" checksum="307AA8274394A9B4" modified="2015-11-11" version="1">MPLPTIEWEGDINGRIRLIDQTLLPTELKFVYCEDIKSIWHAIKTLMVRGAPAIGIAGAMGVVLGVKDIQAKDTDAFLKELKQVTTYLGASRPTAVNLFWGLDRMERIARENKDTSVPEIKEALLQEALRIQNEDKIICRQIGENGAGLIKDGSGVLTHCNAGGLATADYGTALAVLFKAKEQGKHIKVYADETRPLLQGARLTAWELVHAGIDITLICDNMAGHVMKLGRVQCVVVGADRIAANGDTANKIGTYSVSILAKEHKIPFYVAAPVSTFDLSITSGNEIPIEERSPEEITNGFGKRTAPEGVKVFNPAFDVTPASHIAAIITEKGVIHSPSRENIQRLLGTSMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV94</accession>
    <name>A0A0M2UV94_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Putative cytochrome c</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_01308</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000137">
        <property type="protein sequence ID" value="KKO19978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19978">
        <property type="protein sequence ID" value="KKO19978"/>
        <property type="gene ID" value="BROFUL_01308"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036280">
        <property type="entry name" value="Multihaem_cyt_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00034">
        <property type="entry name" value="Cytochrom_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48695">
        <property type="entry name" value="SSF48695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1 4" id="KW-0349">Heme</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="7">
        <location>
            <begin position="324"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="7">
        <location>
            <begin position="423"/>
            <end position="504"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="7">
        <location>
            <begin position="524"/>
            <end position="643"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="7">
        <location>
            <begin position="846"/>
            <end position="944"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="5">
        <location>
            <begin position="144"/>
            <end position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="945" mass="108176" checksum="B97C2C25A1EB2343" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVB6</accession>
    <name>A0A0M2UVB6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Secretion pathway protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_02323</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial secretin family. GSP D subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18931.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18931">
        <property type="protein sequence ID" value="KKO18931"/>
        <property type="gene ID" value="BROFUL_02323"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015627">
        <property type="term" value="C:type II protein secretion system complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015628">
        <property type="term" value="P:protein secretion by the type II secretion system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.120">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001775">
        <property type="entry name" value="GspD/PilQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005644">
        <property type="entry name" value="NolW-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038591">
        <property type="entry name" value="NolW-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004846">
        <property type="entry name" value="T2SS/T3SS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013356">
        <property type="entry name" value="T2SS_GspD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00263">
        <property type="entry name" value="Secretin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03958">
        <property type="entry name" value="Secretin_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00811">
        <property type="entry name" value="BCTERIALGSPD"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02517">
        <property type="entry name" value="type_II_gspD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0653">Protein transport</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1134">Transmembrane beta strand</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Secretin_N" evidence="7">
        <location>
            <begin position="229"/>
            <end position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF03958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18931.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="563" mass="62721" checksum="CA35F8F142CC6BC5" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVD8</accession>
    <name>A0A0M2UVD8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01295</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20023">
        <property type="protein sequence ID" value="KKO20023"/>
        <property type="gene ID" value="BROFUL_01295"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="76"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="574" mass="64759" checksum="18E7AC6BECA8CCF6" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVD9</accession>
    <name>A0A0M2UVD9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">TcA_TcB_BD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01514</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000155">
        <property type="protein sequence ID" value="KKO19787.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19787">
        <property type="protein sequence ID" value="KKO19787"/>
        <property type="gene ID" value="BROFUL_01514"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1872"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040840">
        <property type="entry name" value="TcA_TcB_BD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18276">
        <property type="entry name" value="TcA_TcB_BD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TcA_TcB_BD" evidence="1">
        <location>
            <begin position="680"/>
            <end position="969"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18276"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19787.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1108" mass="125874" checksum="8B6D218DCA752DB9" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVI1</accession>
    <name>A0A0M2UVI1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Ferredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02779</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000264">
        <property type="protein sequence ID" value="KKO18509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18509">
        <property type="protein sequence ID" value="KKO18509"/>
        <property type="gene ID" value="BROFUL_02779"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00037">
        <property type="entry name" value="Fer4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12797">
        <property type="entry name" value="Fer4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="47"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="85"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="161"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18509.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="201" mass="21799" checksum="ED8E5073527F7672" modified="2015-11-11" version="1">MDDAGKILDRRQLFKNLFVFVGDKVADYASKRIDRVMPRGDYLRPPGAVEETEFLSACTRCDECIKACPAKAIKRYQGVMDVAVGTPVIMPRENPCVLCNGLLCIAACKDGALKPVAHANNVKMGIAGITESRCLAWGGQDCQLCYIKCPLQGDAIIQEDGKPVINEEKCVGCGVCEYACHTINNTCAIKVTAKREGSYTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVI9</accession>
    <name>A0A0M2UVI9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Anhydro-N-acetylmuramic acid kinase</fullName>
            <ecNumber evidence="1">2.7.1.170</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">AnhMurNAc kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">anmK</name>
        <name evidence="2" type="ORF">BROFUL_01199</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>1,6-anhydro-N-acetyl-beta-muramate + ATP + H2O = ADP + H(+) + N-acetyl-D-muramate 6-phosphate</text>
            <dbReference type="Rhea" id="RHEA:24952"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58690"/>
            <dbReference type="ChEBI" id="CHEBI:58722"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.170"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-sugar metabolism; 1,6-anhydro-N-acetylmuramate degradation.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cell wall biogenesis; peptidoglycan recycling.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the anhydro-N-acetylmuramic acid kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.170" evidence="1"/>
    <dbReference type="EMBL" id="LAQJ01000128">
        <property type="protein sequence ID" value="KKO20073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20073">
        <property type="protein sequence ID" value="KKO20073"/>
        <property type="gene ID" value="BROFUL_01199"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1485"/>
    <dbReference type="UniPathway" id="UPA00343"/>
    <dbReference type="UniPathway" id="UPA00544"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016773">
        <property type="term" value="F:phosphotransferase activity, alcohol group as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097175">
        <property type="term" value="P:1,6-anhydro-N-acetyl-beta-muramic acid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006040">
        <property type="term" value="P:amino sugar metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009254">
        <property type="term" value="P:peptidoglycan turnover"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01270">
        <property type="entry name" value="AnhMurNAc_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005338">
        <property type="entry name" value="Anhydro_N_Ac-Mur_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30605">
        <property type="entry name" value="PTHR30605"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03702">
        <property type="entry name" value="AnmK"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="1 2" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="26"/>
            <end position="33"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="413" mass="44163" checksum="5E5EA7D859A84A8A" modified="2015-11-11" version="1">MAATTGNKFLRVLQKNTRKVIGLMSGTSADGIDACLVEISGNGIHTKTHILAFETYPYDEGTRIAIFEACNLAAGTVDKICRLNFHLGKLFADAAKSIARKAHVPIADVDLVGSHGQTICHLPGNQATQKTYIGEKEGGDFLNLPSTLQIGEPSVIAQETGIITVADFRPRDMAAGGQGAPLVPYTDFILFRDKEKGRVLQNIGGIANVTFLPRNCAVHEVIAFDTGPGNMMIDRVAELITNNDHHFDEDGKFAAQGKVHDGLLSSLLAHPYLSRPPPKSTGREEFGVPFTDNLYKDALRSGIEGADILATATAFTARTIADSYRQWILPKHCVSEIIISGGGARNATLMKFLIQYLPPSTKIDSIDVFGIASNAKEALAFAILANETISGNPNNLPSVTGASEAVVLGKIIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVQ8</accession>
    <name>A0A0M2UVQ8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Molybdenum ABC transporter permease component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01639</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000171">
        <property type="protein sequence ID" value="KKO19650.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19650">
        <property type="protein sequence ID" value="KKO19650"/>
        <property type="gene ID" value="BROFUL_01639"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="15"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="42"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="87"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="115"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="149"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="1"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19650.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="179" mass="19773" checksum="4838CFAFC6B7958D" modified="2015-11-11" version="1">MVVDLPLSFPPGVDALILLLLLSRTGILGKFFGYFHIYVPYTFAAVVLAKLFVCIPFMISFVREAFDRVDKNIENVAYTLGASPLQIFYKLTFPLSIWGVLKGLIMALSKSLGEIGATLILAGGMTSSTGTMSVLIYFATQKGEMDKAIALAIILEFLTFVLLTIIKFFFKETTRKIHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW35</accession>
    <name>A0A0M2UW35_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01512</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000155">
        <property type="protein sequence ID" value="KKO19785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19785">
        <property type="protein sequence ID" value="KKO19785"/>
        <property type="gene ID" value="BROFUL_01512"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019239">
        <property type="entry name" value="VapB_antitoxin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09957">
        <property type="entry name" value="VapB_antitoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="87" mass="10211" checksum="6B4772C4CF862784" modified="2015-11-11" version="1">MRTTLNIDDLLMKQLLEATHEKSKTRAIAIAIKDYLKKKRIKKILSYQGTVDIENNWQQLEKEEIMEYEGRNAFQKTSVARKDNSPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW66</accession>
    <name>A0A0M2UW66_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_01162</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell outer membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the OmpP1/FadL family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000126">
        <property type="protein sequence ID" value="KKO20087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20087">
        <property type="protein sequence ID" value="KKO20087"/>
        <property type="gene ID" value="BROFUL_01162"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005017">
        <property type="entry name" value="OMPP1/FadL/TodX"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35093">
        <property type="entry name" value="PTHR35093"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03349">
        <property type="entry name" value="Toluene_X"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="472" mass="52160" checksum="756F96060575012D" modified="2015-11-11" version="1">MSEVPLCRAGTGRRTTQNSNGEPMKTKQILFLIILFLPIAAPFTKSSFAQQVPTSINAVPLPVGSGARALGMGGAFIAVADDATAASWNPGGLTQLERPELSVVGSFLSTHMDFDPGNTGFFSLGNEDVSRGDLNYASVAYPFKVLGKNLVAALNYQQKYDFHMNVDFDLTDDSLGINEDINIDFKSKGGIGALTPAIAMQVMPKLSIGVAVNIFTDEFFDDFAWKETLKMSGFGTDGVDTINDTAKSVREFKNFQAVNVTAGMLWDVWEEEEKCLTFGAVYHSPYTADVDRIIDSQSTSNFSGSISTFSNHIREHFEIDYPMSIGAGWGFRYSDALSLSMDVTWTDWSEYEQENKETGEETRPLGLGVSTDRDIDDTYAVRFGTEYLIFRQKMIIPVRGGLFYEPRPSLDDPTDVYGVSVGSGITFKRFSIDGAYQFRWANDVDGEDFGELQGTHFDLQEHLFLASVIVYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWD8</accession>
    <name>A0A0M2UWD8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02012</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000203">
        <property type="protein sequence ID" value="KKO19281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19281">
        <property type="protein sequence ID" value="KKO19281"/>
        <property type="gene ID" value="BROFUL_02012"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644046" evidence="1">
        <location>
            <begin position="26"/>
            <end position="682"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="682" mass="73752" checksum="67590DE0E836C7E2" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWG7</accession>
    <name>A0A0M2UWG7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 8">Glutamine--fructose-6-phosphate aminotransferase [isomerizing]</fullName>
            <ecNumber evidence="2 8">2.6.1.16</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">D-fructose-6-phosphate amidotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">GFAT</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Glucosamine-6-phosphate synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Hexosephosphate aminotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">L-glutamine--D-fructose-6-phosphate amidotransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">glmS</name>
        <name evidence="11" type="ORF">BROFUL_01971</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>D-fructose 6-phosphate + L-glutamine = D-glucosamine 6-phosphate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:13237"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58725"/>
            <dbReference type="ChEBI" id="CHEBI:61527"/>
            <dbReference type="EC" id="2.6.1.16"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.16" evidence="2 8"/>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19311.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19311">
        <property type="protein sequence ID" value="KKO19311"/>
        <property type="gene ID" value="BROFUL_01971"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2454"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004360">
        <property type="term" value="F:glutamine-fructose-6-phosphate transaminase (isomerizing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901137">
        <property type="term" value="P:carbohydrate derivative biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05008">
        <property type="entry name" value="SIS_GlmS_GlmD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd05009">
        <property type="entry name" value="SIS_GlmS_GlmD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00164">
        <property type="entry name" value="GlmS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017932">
        <property type="entry name" value="GATase_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035466">
        <property type="entry name" value="GlmS/AgaS_SIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035490">
        <property type="entry name" value="GlmS/FrlB_SIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005855">
        <property type="entry name" value="GlmS_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001347">
        <property type="entry name" value="SIS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10937:SF0">
        <property type="entry name" value="PTHR10937:SF0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01380">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01135">
        <property type="entry name" value="glmS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51278">
        <property type="entry name" value="GATASE_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51464">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8 11" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="5 8 11" id="KW-0808">Transferase</keyword>
    <feature type="initiator methionine" description="Removed" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="domain" description="Glutamine amidotransferase type-2" evidence="9">
        <location>
            <begin position="2"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="domain" description="SIS" evidence="10">
        <location>
            <begin position="286"/>
            <end position="425"/>
        </location>
    </feature>
    <feature type="domain" description="SIS" evidence="10">
        <location>
            <begin position="457"/>
            <end position="598"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile; for GATase activity" evidence="8">
        <location>
            <position position="2"/>
        </location>
    </feature>
    <feature type="active site" description="For Fru-6P isomerization activity" evidence="8">
        <location>
            <position position="603"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00016090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO19311.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="608" mass="67725" checksum="B8A066B8501F25DC" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWG9</accession>
    <name>A0A0M2UWG9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_00838</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000105">
        <property type="protein sequence ID" value="KKO20413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20413">
        <property type="protein sequence ID" value="KKO20413"/>
        <property type="gene ID" value="BROFUL_00838"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1059"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007318">
        <property type="entry name" value="Phopholipid_MeTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04191">
        <property type="entry name" value="PEMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="43"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="86"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="111"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="179"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="210"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="239" mass="27498" checksum="977F058A3F17DDE4" modified="2015-11-11" version="1">MVKIGNFFFRYRNALFPLVFALLFFEGTWPVFNSELAEIWEIILGITIALSGQILRALTVGFAYIKRGGKKKRMHAETLVQEGIFAHCRNPLYFGNILILLGVGIAGNSLLFVMFGIPFLFFAYAAIICAEETYLEKRFGQVFKDYCKRVNRIIPDFSGIGNTIKGMEFNWKRLIVKEYATPFAWITGLLLLTMKDIYLDQGYEASKSTLWSLLILIMIVATAFFTAWYLKKNKFLRLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWZ1</accession>
    <name>A0A0M2UWZ1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02308</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO19014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19014">
        <property type="protein sequence ID" value="KKO19014"/>
        <property type="gene ID" value="BROFUL_02308"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="67" mass="7269" checksum="59243C0FE3525E9E" modified="2015-11-11" version="1">MKGGVTSVMKSVFNTPMSPVRAEYAGMVSLLSGWSFACAEKDQPQIPSFSCLVTPSFLLIITLTLPW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX05</accession>
    <name>A0A0M2UX05_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative N-acetylmannosaminyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00908</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000109">
        <property type="protein sequence ID" value="KKO20387.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20387">
        <property type="protein sequence ID" value="KKO20387"/>
        <property type="gene ID" value="BROFUL_00908"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1145"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="WecG_TagA_CpsF"/>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="wecG_tagA_cpsF"/>
        <property type="match status" value="1"/>
    </dbReference>
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    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20387.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="258" mass="29628" checksum="F6E5CC9ECA79F87C" modified="2015-11-11" version="1">MYRYSTENILSYPVTTGSKEDCIARIIQWVEDGAKGKYFVCANPHSLEMARNDMIFEEAIKKADLITPDGVGIVIASKLLGGCIKERITGSDIFLEVSAVLNKKSNYTYFFLGSTEENLQTIKDKMKVDFPNIKVAGAYSPPFKPEFTTEENRIMVETINRAKPDVLWVGMTAPKQEKWIYKHKDQLEVKFIGAIGAVFDFYTGNVKRSHPIFQNFGLEWLPRLMREPGRLWRRNFISNPSFLLRAIRSGFHNKLRQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX13</accession>
    <name>A0A0M2UX13_9BACT</name>
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        <submittedName>
            <fullName evidence="8">Succinate dehydrogenase subunit D</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">sdhD</name>
        <name evidence="8" type="ORF">BROFUL_02220</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19039">
        <property type="protein sequence ID" value="KKO19039"/>
        <property type="gene ID" value="BROFUL_02220"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
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        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034804">
        <property type="entry name" value="SQR/QFR_C/D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000701">
        <property type="entry name" value="SuccDH_FuR_B_TM-su"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01127">
        <property type="entry name" value="Sdh_cyt"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF81343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0349">Heme</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
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            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="55"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="91"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="122" mass="14203" checksum="49E36B32B9309BDC" modified="2015-11-11" version="1">MNVEKRGFWSWFLQRITALLLVMGMAIHFFVFHFSPSRYASRYYDEIIHRFCSPGWIAFHITLLALVVFHGLNGLWGIFADFPWNERTVNFVRCALWFTGLALFGVGVYILIWFATATPAGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX24</accession>
    <name>A0A0M2UX24_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Putative glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_00842</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000105">
        <property type="protein sequence ID" value="KKO20417.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20417">
        <property type="protein sequence ID" value="KKO20417"/>
        <property type="gene ID" value="BROFUL_00842"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038731">
        <property type="entry name" value="RgtA/B/C-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13231">
        <property type="entry name" value="PMT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 10" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="43"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="103"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="125"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="175"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="198"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="243"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="292"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="327"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="380"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="408"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="439"/>
            <end position="458"/>
        </location>
    </feature>
    <feature type="domain" description="PMT_2" evidence="9">
        <location>
            <begin position="99"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF13231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO20417.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="577" mass="67824" checksum="B571A764B6FDEA5C" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX52</accession>
    <name>A0A0M2UX52_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00626</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20643.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20643">
        <property type="protein sequence ID" value="KKO20643"/>
        <property type="gene ID" value="BROFUL_00626"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20643.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="165" mass="19147" checksum="F654F4617B73D444" modified="2015-11-11" version="1">MNMDIFDNKDSCEVVIVDDDKEFRNFLNSSLSGILITPEKYQGCEGLVLKPDAGDFSKWLRKNKPELNVEVRKADKRLVLKSSDFWLPLVFLAQDVALPFYLNLVTNYVYDRMKGALRGEKGRIHLEAMYEDKQEGVVKKFHFEGDVDGLQKTIKQFDLNKFMDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX59</accession>
    <name>A0A0M2UX59_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Alpha/beta hydrolase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01732</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000180">
        <property type="protein sequence ID" value="KKO19561.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19561">
        <property type="protein sequence ID" value="KKO19561"/>
        <property type="gene ID" value="BROFUL_01732"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19561.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="432" mass="46463" checksum="6F6EC9EF87E1E60A" modified="2015-11-11" version="1">MTRFDVVFALLDRPCGAPTAGATDPTAGGGFQPGNSNYTSGTISAFGDTLEVRGNVFYPAAVAGSGVPFALAAGGASPIVFIAHGNHARFHDPAERRRERGNNPGGWTRIGNHRGYVYLQEALARLGIISVSVDCHDLNGPTPMSDINIAQRAMLIIAAMRHFQALNAPGSGSIFEGRIDFLRVGLLGHSRGAESVLFVPSITSSVVASLLQGLQNVTFRGVISLAPTDTATITSAPAGIPFMTILPAADGDVRDNDGAKFYDQTTPSPFKVQLYLHRANHNFFNTEWVNSEWQRPWPSVGGPPPAQLEPPLMAENEHRRILSVYATAFFRHTLLGTPFIEILTGRESPPGVNTADIQISAEISTSTTVDNYENSNIRINTLGQTTVDAGTLTSREVVFFQPGVVPDTTYFGNTHGWWPKAQPLWEHSGSLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX74</accession>
    <name>A0A0M2UX74_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00596</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000083">
        <property type="protein sequence ID" value="KKO20668.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20668">
        <property type="protein sequence ID" value="KKO20668"/>
        <property type="gene ID" value="BROFUL_00596"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="28"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="55"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="87"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20668.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="115" mass="12692" checksum="471CEB5C15E39450" modified="2015-11-11" version="1">MPPYLLLIGTFAAFIASAGSYFFAKPRLAAVFLTLFYTGSTLLSSSLLSHHPAVLCSIIIVFVALPVLCLLLFAADVQYGLFCTDTSFVFVLVWLLIPLLFSINLIIYLFKDIYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXE4</accession>
    <name>A0A0M2UXE4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Type II secretion system core protein G</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">BROFUL_01666</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Single-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the GSP G family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19631.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19631">
        <property type="protein sequence ID" value="KKO19631"/>
        <property type="gene ID" value="BROFUL_01666"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2057"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015627">
        <property type="term" value="C:type II protein secretion system complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015628">
        <property type="term" value="P:protein secretion by the type II secretion system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000983">
        <property type="entry name" value="Bac_GSPG_pilin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012902">
        <property type="entry name" value="N_methyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045584">
        <property type="entry name" value="Pilin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013545">
        <property type="entry name" value="T2SS_protein-GspG_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010054">
        <property type="entry name" value="Type2_sec_GspG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07963">
        <property type="entry name" value="N_methyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08334">
        <property type="entry name" value="T2SSG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00813">
        <property type="entry name" value="BCTERIALGSPG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54523">
        <property type="entry name" value="SSF54523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02532">
        <property type="entry name" value="IV_pilin_GFxxxE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01710">
        <property type="entry name" value="typeII_sec_gspG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00409">
        <property type="entry name" value="PROKAR_NTER_METHYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="15"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="domain" description="T2SSG" evidence="11">
        <location>
            <begin position="37"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004377"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00020042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF08334"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO19631.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="145" mass="15887" checksum="498D096A9DFECC48" modified="2015-11-11" version="1">MGNRLKLSLVRQGGFTLLELLIVMIIIGLLAALIGPKMIGRVGESRQTVAKQQIEGFSSALEMYKLDTTKYPTQEQGLEALVTDPQGVSNWKGPYLKKKLVPKDPWGNNYVYLCPGEHGDFDIVSYGADGNAGGEGEDKDVISWE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXF1</accession>
    <name>A0A0M2UXF1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Flagellar rod assembly protein/muramidase FlgJ</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02127</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19144.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19144">
        <property type="protein sequence ID" value="KKO19144"/>
        <property type="gene ID" value="BROFUL_02127"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019301">
        <property type="entry name" value="Flagellar_prot_FlgJ_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10135">
        <property type="entry name" value="Rod-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0966">Cell projection</keyword>
    <keyword evidence="2" id="KW-0969">Cilium</keyword>
    <keyword evidence="2" id="KW-0282">Flagellum</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rod-binding" evidence="1">
        <location>
            <begin position="58"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19144.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="152" mass="16338" checksum="7189ABED3A6B8F9C" modified="2015-11-11" version="1">MEHCSSVKSLLLLQPSCVDTIKALRQQEGTKKDDLALKKASQDFESVLINFVVSSLWKTIQKSDLSGENDGGMETYTEIMHATLSQDIASKGGLGVAPLIYEQLIRNKALAEGAPVLSVRKDVACTQGSPRKGTDSALCCTEEKGLKGVVQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXL0</accession>
    <name>A0A0M2UXL0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">MacB_PCD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_00942</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000116">
        <property type="protein sequence ID" value="KKO20310.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20310">
        <property type="protein sequence ID" value="KKO20310"/>
        <property type="gene ID" value="BROFUL_00942"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025857">
        <property type="entry name" value="MacB_PCD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12704">
        <property type="entry name" value="MacB_PCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="domain" description="MacB_PCD" evidence="7">
        <location>
            <begin position="19"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF12704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20310.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="174" mass="18487" checksum="9A8EA6D3BE8B25C3" modified="2015-11-11" version="1">MTALLKIALRAIQRNKLRSSLTVLGIIIGVGAVIVMVSIGQGAKAFVEKQLESLGTNVLIIIPISTTHTSARGTTGTITLTAEDAFAMEKECGAVSYVSPGIRTSTQVVYGNMNWTTFVSGVGPDFQTIRNWQLESGRFITQQDANSMAKVCLLGQTVVTNLFGTMNLLASGFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXL6</accession>
    <name>A0A0M2UXL6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative diguanylate cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02092</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000209">
        <property type="protein sequence ID" value="KKO19214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19214">
        <property type="protein sequence ID" value="KKO19214"/>
        <property type="gene ID" value="BROFUL_02092"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001610">
        <property type="entry name" value="PAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013655">
        <property type="entry name" value="PAS_fold_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08447">
        <property type="entry name" value="PAS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00086">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="34"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="2">
        <location>
            <begin position="68"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="3">
        <location>
            <begin position="142"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="4">
        <location>
            <begin position="240"/>
            <end position="374"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="374" mass="42599" checksum="A3305905439601BB" modified="2015-11-11" version="1">MTLKNVIVRYPYCAIGTLIALNCAMVRIFKLNGIIFGLIALAFCCTLQFLVYNEGHRESGKKEPNAFLEGLFYRVMNTVPETVYISLFDGSLKYISDGIEKLAGHKPEDLYKTRNSLLQLIHPDDREKVLELIRKLQSGGDGRIEYRLLKGDGSYTWVSDYLNPIRNEWGNVTHYNGILQNTDEKKIADKDLETLNARVHQLNDIVNHHAVRDSLTNAYNRRYSLVILQNEFNRALDQNKALSCLLMDIDQLEAINSRYGYFMGNRILTEISKCLQKQIRSSDVVSRFGDDEFFIILPEIDDEELKRVTDLLVSAVEKCFVTDDEKNISVHFRITTGSSSLARTTKTITDLIEQASSSLYAAKMAKKTQQKANG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXR9</accession>
    <name>A0A0M2UXR9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Spermidine synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00385</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000049">
        <property type="protein sequence ID" value="KKO20888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20888">
        <property type="protein sequence ID" value="KKO20888"/>
        <property type="gene ID" value="BROFUL_00385"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="73"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="100"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="131" mass="13610" checksum="E4BD306A4030841F" modified="2015-11-11" version="1">MLMIFEGVIGCYALVLPFLIHILSSYSFAAETGLTCLIGIAGILTGVEFPLVNKILTEHHQDIAISAGATNSADHIGAFLGAILTGVICIPLFGISGTRLILAALNIASLILIAFSIVYPGRSKAATNSPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXS4</accession>
    <name>A0A0M2UXS4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">CxxC_CXXC_SSSS domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02025</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000206">
        <property type="protein sequence ID" value="KKO19269.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19269">
        <property type="protein sequence ID" value="KKO19269"/>
        <property type="gene ID" value="BROFUL_02025"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013429">
        <property type="entry name" value="Regulatory_FmdB_Zinc_ribbon"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09723">
        <property type="entry name" value="Zn-ribbon_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00834">
        <property type="entry name" value="CxxC_CXXC_SSSS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02605">
        <property type="entry name" value="CxxC_CxxC_SSSS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CxxC_CXXC_SSSS" evidence="2">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="54"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="61"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00834"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19269.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="77" mass="8007" checksum="4A8B86CE3D6BE156" modified="2015-11-11" version="1">MPIYDFQCSQCNTKFDEYFRSASERKKLFCPSCQSENVQKIFSVFGMSVKGGGDAASGSGSGGCGSCTASSCTGCGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXT5</accession>
    <name>A0A0M2UXT5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00373</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000047">
        <property type="protein sequence ID" value="KKO20903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20903">
        <property type="protein sequence ID" value="KKO20903"/>
        <property type="gene ID" value="BROFUL_00373"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="41" mass="4944" checksum="A20A763FF20E7F18" modified="2015-11-11" version="1">MFTIPCRGRFETCPYKTIVFIERIFQKAKLLPILFILVRKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY01</accession>
    <name>A0A0M2UY01_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01448</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000147">
        <property type="protein sequence ID" value="KKO19846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19846">
        <property type="protein sequence ID" value="KKO19846"/>
        <property type="gene ID" value="BROFUL_01448"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="59" mass="6777" checksum="3332C3386B676790" modified="2015-11-11" version="1">MSERLLRFARNDNVQCIIKVHGRCHCEGPFPKQSPRFHNGELVAALLRYDMHGNVLEDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY39</accession>
    <name>A0A0M2UY39_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Signal peptidase I</fullName>
            <ecNumber evidence="3">3.4.21.89</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_00489</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Cleavage of hydrophobic, N-terminal signal or leader sequences from secreted and periplasmic proteins.</text>
            <dbReference type="EC" id="3.4.21.89"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the peptidase S26 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.89" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000066">
        <property type="protein sequence ID" value="KKO20787.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20787">
        <property type="protein sequence ID" value="KKO20787"/>
        <property type="gene ID" value="BROFUL_00489"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.612"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006465">
        <property type="term" value="P:signal peptide processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06530">
        <property type="entry name" value="S26_SPase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036286">
        <property type="entry name" value="LexA/Signal_pep-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000223">
        <property type="entry name" value="Pept_S26A_signal_pept_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019758">
        <property type="entry name" value="Pept_S26A_signal_pept_1_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019757">
        <property type="entry name" value="Pept_S26A_signal_pept_1_Lys-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019533">
        <property type="entry name" value="Peptidase_S26"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43390">
        <property type="entry name" value="PTHR43390"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10502">
        <property type="entry name" value="Peptidase_S26"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00727">
        <property type="entry name" value="LEADERPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51306">
        <property type="entry name" value="SSF51306"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00760">
        <property type="entry name" value="SPASE_I_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00761">
        <property type="entry name" value="SPASE_I_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="28"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_S26" evidence="7">
        <location>
            <begin position="25"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_S26" evidence="7">
        <location>
            <begin position="138"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_S26" evidence="7">
        <location>
            <begin position="453"/>
            <end position="492"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="active site" evidence="4">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <feature type="active site" evidence="4">
        <location>
            <position position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013208"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR600223-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF10502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20787.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="501" mass="57372" checksum="1B13DAB5BA26D24A" modified="2015-11-11" version="1">MTDLKEKQAITRNKEKTKKRKGKLRENIESIAIAVAIAFAIRYFVVEAFKIPTGSMATTLLGEHKNVHCPNCDWFFYADRQSDDALCPNCQFKINLSDFCDACGNRIRHNWPAWLWRKGHCPRCQTAVAWSDLSNRLIHGGNRIVVNKFWYKFKDPQRWDVMVFIYPLYDLTCKNCSAQFPDTEWRDGFRCHRCGSTKFSKKKKNYIKRLVGLPGEKLQIVNGDIYINDKIQRKPDSVQKTLWMPVYNSNYLAKKTDTPVWVTNGNAWKIHDTSITLDTLSQEDSDTSLVTFGRSVSDQNGYNSHSGHNEMGDVKISFDVTLLKGSQSLTLVLEKNNDIFTALIPADSIDGKTRLLKNGMSVLEKDFRLQTSQQHKIEFSNADRMVCLSINGNKVFSFDDDDGVIPDLRSSDTSKIRFGGTRVHATFGNINIFHDIYYTSLSAGSWGTTKPVQLGEKDYFMLGDNSRNSNDSRVWKFVPEKNIVGKAFFVFWPPNTMKFIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY86</accession>
    <name>A0A0M2UY86_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Putative pre-16S rRNA nuclease</fullName>
            <ecNumber evidence="2">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01323</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the YqgF HJR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000139">
        <property type="protein sequence ID" value="KKO19931.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19931">
        <property type="protein sequence ID" value="KKO19931"/>
        <property type="gene ID" value="BROFUL_01323"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1638"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000967">
        <property type="term" value="P:rRNA 5'-end processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16964">
        <property type="entry name" value="YqgF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00651">
        <property type="entry name" value="Nuclease_YqgF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005227">
        <property type="entry name" value="YqgF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006641">
        <property type="entry name" value="YqgF/RNaseH-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037027">
        <property type="entry name" value="YqgF/RNaseH-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33317">
        <property type="entry name" value="PTHR33317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03652">
        <property type="entry name" value="RuvX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00732">
        <property type="entry name" value="YqgFc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00250">
        <property type="entry name" value="RNAse_H_YqgF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0690">Ribosome biogenesis</keyword>
    <feature type="domain" description="YqgFc" evidence="3">
        <location>
            <begin position="1"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19931.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="139" mass="15377" checksum="A2F24F0D7B044033" modified="2015-11-11" version="1">MRILGIDYGEKRIGMAISDPLGITAQGLPTIAYSHIQEALQKIMTVISEKEVGEIVVGLPKHMNNSLGESARAALSFAEQLKKCTGISVKTIDERLSTTRAHRAMLEGNLSRKQRKDRVDMIAAQLILQHYLDSFSANR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYA0</accession>
    <name>A0A0M2UYA0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00731</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000091">
        <property type="protein sequence ID" value="KKO20545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20545">
        <property type="protein sequence ID" value="KKO20545"/>
        <property type="gene ID" value="BROFUL_00731"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.925"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="144" mass="16141" checksum="EEA7049ECEEAEE5F" modified="2015-11-11" version="1">MGKKVTWKDVNGNAHDLDFVLERSGTDETIGVPVAFIETAWRRYTRHSRNKAQEIQGAIQVLFLTHKHGCPFIGAILAGEFTTGALNQLKSLGFHVLYFPYDSIVQAFKSAGVNADFDEDTPEKDFRSKLRSWNASNKALLINL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYC0</accession>
    <name>A0A0M2UYC0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Potassium uptake system protein TrkH</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">trkH</name>
        <name evidence="8" type="ORF">BROFUL_01818</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000189">
        <property type="protein sequence ID" value="KKO19479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19479">
        <property type="protein sequence ID" value="KKO19479"/>
        <property type="gene ID" value="BROFUL_01818"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008324">
        <property type="term" value="F:cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006813">
        <property type="term" value="P:potassium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003445">
        <property type="entry name" value="Cat_transpt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02386">
        <property type="entry name" value="TrkH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0406">Ion transport</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="31"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="66"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="94"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="145"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="174"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="209"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="254"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="307"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="371"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="400"/>
            <end position="421"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="466" mass="50277" checksum="51C1EEC4295D7AFF" modified="2015-11-11" version="1">MTFCHRVFADWLSKTLPGKSMFYYILSPHRLLLIGFITIILAGSLLLTLPVALARGTGESQPFIDALFTATSAVSTTGLTLVDVGSFYSLFGQIVILTLVQIGGLGYMIFIVLVMSGLGIRLSLSGKLILQESLTSPPYEEVLRFSKMVVFVTFAFEFLGAAVLSLYWMKDFSVQHAIYLGIFHSVSAFCTAGFSLFPDNLCSCRDSMVINITIDALCISGSIGFVVLYDIYYAIFGKLKEDEPPKRLLVHTKLVLLMLPALFMIGFLMVFISEWSTPLSWKDRLLTCAFQVISASTTTGFNTVETGAMKTLGLASVIFLMYIGASPGGTGGGVKTTTFGLSISSVISVISQHDELIVFGRHISSRVKDKALAICAIALLLIMLDVFILSVTEKASFMEIVFETVSAFGTVGLSAGITASLSVTGKAVLLTTMLIGRVGPLAVGYSIRGKCRIVPVKYPEGVMLVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYE9</accession>
    <name>A0A0M2UYE9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cytochrome b6</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01774</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000185">
        <property type="protein sequence ID" value="KKO19514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19514">
        <property type="protein sequence ID" value="KKO19514"/>
        <property type="gene ID" value="BROFUL_01774"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1050.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039543">
        <property type="entry name" value="POX18/UbiT/NSL-TP1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003033">
        <property type="entry name" value="SCP2_sterol-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036527">
        <property type="entry name" value="SCP2_sterol-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10094">
        <property type="entry name" value="PTHR10094"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02036">
        <property type="entry name" value="SCP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55718">
        <property type="entry name" value="SSF55718"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SCP2" evidence="1">
        <location>
            <begin position="18"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="121" mass="13735" checksum="FC987132FA36B8E1" modified="2015-11-11" version="1">MNKRPEIPENITHAEYFNRLLKDRVNHAPISKISGLDAVIQFEITDGENGIWCVVVENGFVTEVTKETLVKPTCAFILDSNTFLSILRREITPQKAFFQGKVAIKGNMLLALRMNILVNYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYF1</accession>
    <name>A0A0M2UYF1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Myohemerythrin (MHR)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01768</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the hemerythrin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000184">
        <property type="protein sequence ID" value="KKO19519.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19519">
        <property type="protein sequence ID" value="KKO19519"/>
        <property type="gene ID" value="BROFUL_01768"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd12107">
        <property type="entry name" value="Hemerythrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012312">
        <property type="entry name" value="Hemerythrin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035938">
        <property type="entry name" value="Hemerythrin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012827">
        <property type="entry name" value="Hemerythrin_metal-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01814">
        <property type="entry name" value="Hemerythrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47188">
        <property type="entry name" value="SSF47188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02481">
        <property type="entry name" value="hemeryth_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hemerythrin" evidence="4">
        <location>
            <begin position="13"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19519.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="134" mass="15564" checksum="D9033A9788437131" modified="2015-11-11" version="1">MATKWSEDLSIGVKAIDEQHKGIFSRVDNLLNAMRQGKGKDEIGKTYTFLADYVVRHFKDEEDLMAKYNYDGCSKQKEEHTRFVKEFSSLKREFETNGTRPNLVIDTQRKLCDWLTNHISNEDKKIGVFLRVAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYF7</accession>
    <name>A0A0M2UYF7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Multidrug efflux protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01288</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20016">
        <property type="protein sequence ID" value="KKO20016"/>
        <property type="gene ID" value="BROFUL_01288"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006603">
        <property type="entry name" value="DinF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00797">
        <property type="entry name" value="matE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="70"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="115"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="158"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="191"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="216"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="272"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="312"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="344"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="378"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="412"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="439"/>
            <end position="463"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="473" mass="51046" checksum="A6A0DD61D131A827" modified="2015-11-11" version="1">MCLFFDGNFYNTAASLSHKITDIGMSMLDLTENNLNKNIFKLSIPLIIENILHMSVFISDTLMVARLGTAAIAAVGLAGTIFFIISIIFSSLNIGSASIIARHVGAKEIGAAQMVAAQSITLSLLLGILASPFLVLFARKMLVFMSAEPIIVDLGVGYLQIVCGFLVFRLIMLACSGILRGAGDTRTPMKVTLVVNIMNILLNWLLIFGIGPFPGLGVPGVGCATVIAYMVGTGLLLAKLFAKGSVMKVSLQQMTRLHLETFKRIIRISIPVAIDTFLTQMGFMFFTKIVAILGTVSLAAHEIALRIESISFMPGFALAVSTATLVGQSLGAKNINLAFLSMKRSCYFALGLMGFFAVIFLLFPEQITGLFKPENKVHSLATVCLMISAIEQPALAVYMVYAGGLRGAGDTVSPMIVAIVGTLFLHVPLAYFFGITLQWGLAGVWFGAAIDWIIRAVAIYILYKRGRWRSVMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYM0</accession>
    <name>A0A0M2UYM0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00592</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000082">
        <property type="protein sequence ID" value="KKO20685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20685">
        <property type="protein sequence ID" value="KKO20685"/>
        <property type="gene ID" value="BROFUL_00592"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="227" mass="25931" checksum="39F55B0965B28775" modified="2015-11-11" version="1">MLMERLITDNPQFHSYKGTFTSWAINPNTLNFLYSMLTPGMSTLETGCGQTTVVFSIARTKHICITPDQGEAERVDQYCTKLGLEKNITFVIDSSDAALPQDGLIPSELDHVFIDGAHRFPIAIIDWYYTVRKLKLGGIVSVDDFKIPSVKILYDFLCTEEEWELIRVMHNTAFFKKLREPMNINDWSGQKINLSYQTSARGFGKKGFIRKLILPQFERILKGKNHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYV5</accession>
    <name>A0A0M2UYV5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00251</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000031">
        <property type="protein sequence ID" value="KKO21002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21002">
        <property type="protein sequence ID" value="KKO21002"/>
        <property type="gene ID" value="BROFUL_00251"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021272">
        <property type="entry name" value="DUF2851"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11013">
        <property type="entry name" value="DUF2851"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="524" mass="60297" checksum="1372A08B92D8B979" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ10</accession>
    <name>A0A0M2UZ10_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00223</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000027">
        <property type="protein sequence ID" value="KKO21052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21052">
        <property type="protein sequence ID" value="KKO21052"/>
        <property type="gene ID" value="BROFUL_00223"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="76"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO21052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="98" mass="10050" checksum="757C7886903AF0C1" modified="2015-11-11" version="1">MKTSVKIAIIGAIATVLAAVISAIIPIIYQNGDKGAPEKPGVTPTAEQGNISVNKSGNVVIGNITTEEGDVIIGGTKTTNVQALPEGQDSETRRENGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ27</accession>
    <name>A0A0M2UZ27_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_00195</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0382 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000022">
        <property type="protein sequence ID" value="KKO21077.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21077">
        <property type="protein sequence ID" value="KKO21077"/>
        <property type="gene ID" value="BROFUL_00195"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.240"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006696">
        <property type="entry name" value="DUF423"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43461">
        <property type="entry name" value="PTHR43461"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04241">
        <property type="entry name" value="DUF423"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="42"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="66"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="99"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO21077.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="124" mass="13411" checksum="74FBFDA39376F552" modified="2015-11-11" version="1">MDRIFFVIGALSAGVGVAAGAFGAHGLKSRLSPEMFSVFEVGVRYQMYHVFALMATAWAKTRWPSSLVVIGGWLFVVGIVLFSGSLYLLSLSGMHWPGIVTPLGGVALLAGWVCLGWGVWRRHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ97</accession>
    <name>A0A0M2UZ97_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Mg2 transporter protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_01000</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000118">
        <property type="protein sequence ID" value="KKO20291.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20291">
        <property type="protein sequence ID" value="KKO20291"/>
        <property type="gene ID" value="BROFUL_01000"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1254"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046873">
        <property type="term" value="F:metal ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045861">
        <property type="entry name" value="CorA_cytoplasmic_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045863">
        <property type="entry name" value="CorA_TM1_TM2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002523">
        <property type="entry name" value="MgTranspt_CorA/ZnTranspt_ZntB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01544">
        <property type="entry name" value="CorA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143865">
        <property type="entry name" value="SSF143865"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144083">
        <property type="entry name" value="SSF144083"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="252"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="283"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009765"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20291.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="309" mass="35176" checksum="415F796EED1DE062" modified="2015-11-11" version="1">MINIYKSTNHRLETVDTPTEGCWVNVVDPSVQEIAQIEELGIPADFVTHSLDIDERAHTERNDGIVLIVLRVPYEEDAKAQIPYSTVPLGIILTNTLIVTICRTETSVVRKFITGQIPELSTVKKNRFVLHLLLRTAVQYLEYLRGIDSSVDALEDRLYRSLQNKEVMDLLKYQKSLVYFTTALKSNELMLERMQKGQLFQAYPEDAELLEDVLIEIRQAIEMTYISENILSQMMDAFASIISNNLNVVMKILTSITMVISLPTLIASLYGMNVSLPGQHYPYAFALTLLVSLMISAIVVIVFWKKKWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZA7</accession>
    <name>A0A0M2UZA7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00305</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000035">
        <property type="protein sequence ID" value="KKO20970.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20970">
        <property type="protein sequence ID" value="KKO20970"/>
        <property type="gene ID" value="BROFUL_00305"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="14"/>
            <end position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20970.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="34" mass="3675" checksum="543264B529D9AED6" modified="2015-11-11" version="1">MREGLLRFARNDNVQYVIGGIASVIACVNVLIAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZC7</accession>
    <name>A0A0M2UZC7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01436</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000147">
        <property type="protein sequence ID" value="KKO19834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19834">
        <property type="protein sequence ID" value="KKO19834"/>
        <property type="gene ID" value="BROFUL_01436"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="72" mass="8399" checksum="D9916D9BCE0EFB20" modified="2015-11-11" version="1">MKTLVIKSDRLNLPEEIARKLKGKEVEFIETKEGILIKPIENQIKNARGSLKGSHFSSEKYMRLKKEEKELE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZD3</accession>
    <name>A0A0M2UZD3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Holo-[acyl-carrier-protein] synthase</fullName>
            <shortName evidence="8">Holo-ACP synthase</shortName>
            <ecNumber evidence="8">2.7.8.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">4'-phosphopantetheinyl transferase AcpS</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">acpS</name>
        <name evidence="10" type="ORF">BROFUL_00293</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>apo-[ACP] + CoA = adenosine 3',5'-bisphosphate + H(+) + holo-[ACP]</text>
            <dbReference type="Rhea" id="RHEA:12068"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="Rhea" id="RHEA-COMP:9690"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:58343"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="EC" id="2.7.8.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the P-Pant transferase superfamily. AcpS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.8.7" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000034">
        <property type="protein sequence ID" value="KKO20980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20980">
        <property type="protein sequence ID" value="KKO20980"/>
        <property type="gene ID" value="BROFUL_00293"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008897">
        <property type="term" value="F:holo-[acyl-carrier-protein] synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.470.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00101">
        <property type="entry name" value="AcpS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008278">
        <property type="entry name" value="4-PPantetheinyl_Trfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037143">
        <property type="entry name" value="4-PPantetheinyl_Trfase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002582">
        <property type="entry name" value="ACPS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004568">
        <property type="entry name" value="Ppantetheine-prot_Trfase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01648">
        <property type="entry name" value="ACPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56214">
        <property type="entry name" value="SSF56214"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00516">
        <property type="entry name" value="acpS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00556">
        <property type="entry name" value="pantethn_trn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 8" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="4 8" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="1 8" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="6 8" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5 8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="ACPS" evidence="9">
        <location>
            <begin position="3"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="6"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="54"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00101"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01648"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO20980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="128" mass="14996" checksum="5FE9A35E0D59D042" modified="2015-11-11" version="1">MYVGIDIVEIRRIEKLFSANEDFLRRIYTEKEVEYCNQKKNKYQHFAARFASKEAMFKALGTGWADKMKWTDIELLNDKKGRPYLNLYGRVKELADEKRIGDISVSLSHCHDYAIAQVLLVPKKEDCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZF1</accession>
    <name>A0A0M2UZF1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">2-methylcitrate dehydratase</fullName>
            <ecNumber evidence="4">4.2.1.79</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">prpD</name>
        <name evidence="4" type="ORF">BROFUL_01423</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PrpD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.79" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000146">
        <property type="protein sequence ID" value="KKO19864.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19864">
        <property type="protein sequence ID" value="KKO19864"/>
        <property type="gene ID" value="BROFUL_01423"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1755"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047547">
        <property type="term" value="F:2-methylcitrate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.4100.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036148">
        <property type="entry name" value="MmgE/PrpD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042183">
        <property type="entry name" value="MmgE/PrpD_sf_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042188">
        <property type="entry name" value="MmgE/PrpD_sf_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005656">
        <property type="entry name" value="MmgE_PrpD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045337">
        <property type="entry name" value="MmgE_PrpD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045336">
        <property type="entry name" value="MmgE_PrpD_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16943">
        <property type="entry name" value="PTHR16943"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03972">
        <property type="entry name" value="MmgE_PrpD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19305">
        <property type="entry name" value="MmgE_PrpD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103378">
        <property type="entry name" value="SSF103378"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0456">Lyase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MmgE_PrpD" evidence="2">
        <location>
            <begin position="5"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="domain" description="MmgE_PrpD_C" evidence="3">
        <location>
            <begin position="262"/>
            <end position="438"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF19305"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19864.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="457" mass="50426" checksum="B7F6772A7F19C1CE" modified="2015-11-11" version="1">MTQAEQLAAFVVQASYGDLSKSVCQQLKIRVLDALGCAIGAMDGEPILLIRSQNEDFGGTSRCTMIGGGQGAPDRTAFYHSALVRYLDFNDSYLAKGETCHPSDNLGAILAAAEYAHQKGQVFMTALAVSYQVHCRLSDVAPLRAKGFDHTTQGAYAVAAGVSKALGMDQTKTAHAIALCGTAFNALRVTRTGKLSHWKGLAYPHTAFGCTHATFLAMRGITGPLGVFEGNKGFMDTISGRFEIDWSRENLERVNQTIIKRYNAEIHSQTAIEGILELKEEYGFSAAEVARIEIDIFDVAYHIIGGGEEGDKTLVSSKEEADHSLPYMIAVAVLDDRVMPDQYLLERIQNNDVQALLRKVTVRPSEAYSRQFPDQMPCRITVSLLNGRLMVKEKQDYEGFHTRPIRWETVVQKFERLSSPYTDAPLRREIIDAVANLDSIQIAYLMRLLAKVQVSMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZF6</accession>
    <name>A0A0M2UZF6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00056</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Mitochondrion</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000007">
        <property type="protein sequence ID" value="KKO21217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21217">
        <property type="protein sequence ID" value="KKO21217"/>
        <property type="gene ID" value="BROFUL_00056"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.69"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12710">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003788">
        <property type="entry name" value="NDUFAF7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038375">
        <property type="entry name" value="NDUFAF7_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12049">
        <property type="entry name" value="PTHR12049"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02636">
        <property type="entry name" value="Methyltransf_28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO21217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="308" mass="35283" checksum="EA5077995755FA21" modified="2015-11-11" version="1">MGDYGEGFVHRCGNGREQRMLCHDIVCCIKNEYPEFYENFHYIIVESNPHAREKQRALLASLEIPEEKVSWHTCTEDGFSFGRMRGCFLSNEFVDALPVHRLKMKNKVFKETYVGYNGINFCDIDDVISGPALHGYLKTNKIYLEEDQACEVNIGAADWLRHASEKLDEGFVITIDYGDTRDRLYHGNAREGTLRCYHGHTVNRDYYARPGEQDITAHVDFTNLINAGRLAQLEVTGFTKQSHFLIALGMLERLRDAKQDTGTVLKLKNLIHPEVMGEIFKVLIQHKKVKDPQLTSLRPLSSITLNAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZF7</accession>
    <name>A0A0M2UZF7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Integrase core domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00925</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000111">
        <property type="protein sequence ID" value="KKO20351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20351">
        <property type="protein sequence ID" value="KKO20351"/>
        <property type="gene ID" value="BROFUL_00925"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1165"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="145"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="domain" description="Integrase catalytic" evidence="2">
        <location>
            <begin position="114"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="292" mass="33887" checksum="7329C4A5EE92FECF" modified="2015-11-11" version="1">MMRAAESLAQQVRIKKACKALGIPRATYYYYQKGKHDLVGKRGYSTPPLALSEQEQQAVLDILHSERFMDKAPHEIYATLLDEGTYLCSTRTMYRILEKHGEVHERRNLVLRPHYQKPELLATASNQVWSWDITKLKGPAKWTYFYLYVILDIFSRYVVGWMVAYRELAALAQRLIVDSCQKQTIRPEQLVIHADRGSSMTSKPVAFLLSDLGITKSHSRPYVSNDNPYSEAQFKTLKYRPDFPDTFGSIEDARVFCKSFFTWYNTEHRHSGIGLLKPEDVHYGRTHQIVKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZI8</accession>
    <name>A0A0M2UZI8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_00242</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000030">
        <property type="protein sequence ID" value="KKO21025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21025">
        <property type="protein sequence ID" value="KKO21025"/>
        <property type="gene ID" value="BROFUL_00242"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025943">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025944">
        <property type="entry name" value="Sigma_54_int_dom_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00158">
        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01590">
        <property type="entry name" value="HTHFIS"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00676">
        <property type="entry name" value="SIGMA54_INTERACT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00688">
        <property type="entry name" value="SIGMA54_INTERACT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="8">
        <location>
            <begin position="5"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="7">
        <location>
            <begin position="144"/>
            <end position="373"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO21025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="452" mass="51061" checksum="418FBCA10D86089F" modified="2015-11-11" version="1">MKTPTILIVERNDTLRKELKRFLLQQKYNSLESSNKTEALGIIQCSVVHLVIVGSLDGGRDSLQMAQEIRQWNSAIPLILITHDSTEALAIAALKLGISDYFKHPVSFEGLAASIRRCLSGPVVHTPSGTQETPRQGLFKRGKFIGDSLPMREIKTCIGKVAQTDSNVLITGETGTGKELTAELVHQNSPRNKNPFVCINCTAIPDSLLESELFGYERGAFTGADTLKEGKLKQSDGGTVFLDEIGDMSIYHQAKILRVIENRQIQRLGGKGSIPLNIRFVAATNKNLEEMVSEGRFRKDLYYRLNVVNIHLPPLRQRKEDIFILLDHYMYELNRRFGRHVKGFAADALEFFHTYNWPGNIRELKNLLEAIMANKDSGWVSIQDLPASFRNRVIDGRMLSQDEKDRVLAVLLSTNWNKAEAARKLSWSRMTLYRKLERYHISTGKKEASGYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZK5</accession>
    <name>A0A0M2UZK5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cyclic 3',5'-adenosine monophosphate phosphodiesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00867</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000106">
        <property type="protein sequence ID" value="KKO20396.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20396">
        <property type="protein sequence ID" value="KKO20396"/>
        <property type="gene ID" value="BROFUL_00867"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1096"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004843">
        <property type="entry name" value="Calcineurin-like_PHP_ApaH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00149">
        <property type="entry name" value="Metallophos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metallophos" evidence="1">
        <location>
            <begin position="64"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20396.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="361" mass="41020" checksum="75B41553AF53D9EE" modified="2015-11-11" version="1">MSTKNKGKNDRVKHTNFGGVSRREFLKTTMKAGVVLAGSDAILNSSENLVQLVAMKKGTEEFMFAYISDSHLFARGKEHRFARALIKAVDDVNAMSPQPDFVLYGGDLAQLGLREELLLGKEIISPLKPKCYMMVGEHDWYYDMGVAWKEFFGQPTYSFDHKGVHFIVLNSVIVEDYWSATGMSPMERMLFMAQLDNPKGRPFTVGEEQRKWLKDDLSRVSKATPVVVFSHSPLYKYYKPWNFWTGDAEKVQQLLMPFKSVTVIHGHTHQVLTNKIKNMAFHGMLSTAWPWPYAPEGIPALTIQMDRADPFNQFDGTGWGTAEIISQGNVNKTYHLWDRNPMVISYEKLSASREPVSGPSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZM2</accession>
    <name>A0A0M2UZM2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Helicase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01336</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000139">
        <property type="protein sequence ID" value="KKO19944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19944">
        <property type="protein sequence ID" value="KKO19944"/>
        <property type="gene ID" value="BROFUL_01336"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140658">
        <property type="term" value="F:ATP-dependent chromatin remodeler activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10810">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038718">
        <property type="entry name" value="SNF2-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000330">
        <property type="entry name" value="SNF2_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00176">
        <property type="entry name" value="SNF2-rel_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0347">Helicase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="2">
        <location>
            <begin position="114"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="3">
        <location>
            <begin position="515"/>
            <end position="675"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="695"/>
            <end position="736"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="798" mass="91779" checksum="A1DA47C84DD0196D" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZM6</accession>
    <name>A0A0M2UZM6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">3-oxoacyl-[acyl-carrier-protein] reductase</fullName>
            <ecNumber evidence="3">1.1.1.100</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00217</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>a (3R)-hydroxyacyl-[ACP] + NADP(+) = a 3-oxoacyl-[ACP] + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:17397"/>
            <dbReference type="Rhea" id="RHEA-COMP:9916"/>
            <dbReference type="Rhea" id="RHEA-COMP:9945"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:78776"/>
            <dbReference type="ChEBI" id="CHEBI:78827"/>
            <dbReference type="EC" id="1.1.1.100"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Lipid metabolism; fatty acid biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.100" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000026">
        <property type="protein sequence ID" value="KKO21060.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21060">
        <property type="protein sequence ID" value="KKO21060"/>
        <property type="gene ID" value="BROFUL_00217"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.264"/>
    <dbReference type="UniPathway" id="UPA00094"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004316">
        <property type="term" value="F:3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011284">
        <property type="entry name" value="3oxo_ACP_reduc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01830">
        <property type="entry name" value="3oxo_ACP_reduc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="3" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="3" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="3" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="2 3" id="KW-0521">NADP</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="155"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="12"/>
            <end position="15"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="38"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="63"/>
            <end position="64"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="90"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="155"/>
            <end position="159"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="188"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR611284-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR611284-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU366074"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO21060.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="247" mass="26635" checksum="AD5E43E41927C793" modified="2015-11-11" version="1">MQFKEKIAIVTGGTRGIGKAIALELAKNGCNVAFNYHTNTDAAYALVKEIEAMGVKAAAFQINVTSFEGAKNMVKEVKDTFGRIDFLVNNAGITRDKLLALMSENDWDEVINTNLKSVYNFSKAVITQMIKQKSGSILNITSVSGLMGIAGQVNYSSSKAGMVGFTKALAKEVGKANITVNAIACGFIETDMTSVLPQEYKDKMIDMIPVRRFGKPEEIAKVAAFLLSEDARYITGHVISVDGGLAM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZQ3</accession>
    <name>A0A0M2UZQ3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Calcineurin-like phosphoesterase superfamily domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00831</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000104">
        <property type="protein sequence ID" value="KKO20446.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20446">
        <property type="protein sequence ID" value="KKO20446"/>
        <property type="gene ID" value="BROFUL_00831"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004843">
        <property type="entry name" value="Calcineurin-like_PHP_ApaH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043461">
        <property type="entry name" value="LpxH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34990">
        <property type="entry name" value="PTHR34990"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00149">
        <property type="entry name" value="Metallophos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metallophos" evidence="1">
        <location>
            <begin position="5"/>
            <end position="335"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20446.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="414" mass="48120" checksum="F4238C87EB966006" modified="2015-11-11" version="1">MSIKVFFSDVHLSDTTTGDHNITAGTLEGFWSDIQGDVDNAGGTKKLEIIILGDFIDVIRSTQWTGDMQPWSEASKKKKERVDEVLSKVIKKNKSVFDTLKGYVEEKKVKITYIMGNHDRLINSEGYEDMREKIRDVSGISYTKSKGEPFPWEYRVDGLPVYAVHGNNYDVYNKTENNALPVGDAIVTLLINQYPEEVNKVIDDPDVFDALQEIDNLRPSTMTPYWIDQVKKSLKPKNQKILIDTWNILSDKFFHDAFVKEWLQKHDYWSLLPDDADKLEIAFKHFTDTTLERVYEKFLEIKRDFIKDTDKNALEALKLCEQHQCDYVLFGHTHESCVQLLNVEDGKEKYYVNTGTWRRRIVPGGYKKKQIVFGQQESIDYVIFKIDDQSNEVQGFQLWNGTSNRGELFYKKEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZU8</accession>
    <name>A0A0M2UZU8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01291</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20019.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20019">
        <property type="protein sequence ID" value="KKO20019"/>
        <property type="gene ID" value="BROFUL_01291"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1594"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015904">
        <property type="entry name" value="Sulphide_quinone_reductase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10632">
        <property type="entry name" value="PTHR10632"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="1">
        <location>
            <begin position="7"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="domain" description="Pyr_redox_2" evidence="1">
        <location>
            <begin position="205"/>
            <end position="307"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20019.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="397" mass="44312" checksum="1A209B68AC6AF265" modified="2015-11-11" version="1">MSQKDTYQLVIVGGGTAGITVAAQLSRISNPQKIAIIEPSEKHYYQPIWTLVGAGVFPREASEKNTKDVIPPGVVWIKDRVVRFDPGNNYLTTETGKTIEYQYLIIAAGIQLDWDKIPGLKESIGNNGMCSNYSYHTVNSTWESIRNFKGGNAIFTQPNTPIKCGGAPQKICYLAEHYFRKSGVREKSSLTFALPQGVIFSVKKYANALVEVAKRKGIDVRYQHNLVELRPDKKEAVFKKTESGEDIVMKYDMIHVTPPMSAPDFLKKSPLAGENGWVDVHKDTLQHNRFKNIFAIGDCSSLPTSKTAAAIRKQAPVLVGNLLSKMNGTPLMGTYDGYTACPIVTGYGSLILAEFDYTLNPRETFPFDQSQERYSMYALKAYVLPRMYWHGMLKGRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZV7</accession>
    <name>A0A0M2UZV7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00166</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000017">
        <property type="protein sequence ID" value="KKO21120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21120">
        <property type="protein sequence ID" value="KKO21120"/>
        <property type="gene ID" value="BROFUL_00166"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="151"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="19"/>
            <end position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO21120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="197" mass="21543" checksum="A879FA020C10F087" modified="2015-11-11" version="1">MGKDSALGHDPLNWMKVVQESKKSVSLGNGNAADQNTTRSEQPAGPQVTAKQHAPASPGDDKTPPVLKEPQPQNKTDNRAGGASVPKQKVMIGRLYEKPSAEKTKSTPHTEIVSPVSRPYSGPSLPASPRLQPVQKSERTTVPFSLSADRMSTYIIVAYTALLLILGYFVYHDLSKRTSRIEARLFAVEKALRLKQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZX0</accession>
    <name>A0A0M2UZX0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribose 5-phosphate isomerase B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01222</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LacAB/RpiB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000133">
        <property type="protein sequence ID" value="KKO20059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20059">
        <property type="protein sequence ID" value="KKO20059"/>
        <property type="gene ID" value="BROFUL_01222"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016861">
        <property type="term" value="F:intramolecular oxidoreductase activity, interconverting aldoses and ketoses"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1400.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003500">
        <property type="entry name" value="RpiB_LacA_LacB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036569">
        <property type="entry name" value="RpiB_LacA_LacB_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02502">
        <property type="entry name" value="LacAB_rpiB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89623">
        <property type="entry name" value="SSF89623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="100" mass="10709" checksum="B5F4384DBCDD9854" modified="2015-11-11" version="1">MRIALGSDHAGFELKEEMKAFLTKENHEVIDVGAHSKDPVDYPDYAEAIGAACANTGQSAASFSVAAVLARPWPQTGFPAFAQGCAMTPIRHTKAWSMIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZX9</accession>
    <name>A0A0M2UZX9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Amino acid transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_00106</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000015">
        <property type="protein sequence ID" value="KKO21145.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21145">
        <property type="protein sequence ID" value="KKO21145"/>
        <property type="gene ID" value="BROFUL_00106"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.136"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002293">
        <property type="entry name" value="AA/rel_permease1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13520">
        <property type="entry name" value="AA_permease_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="25"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="60"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="93"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="120"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="164"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="202"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="234"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="277"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="321"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="374"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="399"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="432"/>
            <end position="450"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="456"/>
            <end position="474"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO21145.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="503" mass="54796" checksum="B20117A714707A49" modified="2015-11-11" version="1">MKKLFAKKTLRDLAEESNHYHFKRVLGPFSLTALGIGAVIGAGIFVLTGLAAREFAGPSLILSFVLSGLACIFVALCYAEFASMVPLAGSAYTYSYTALGEIFAWIIGWDLILEYSLASSLVAVGWSHYFIQLLGLFGLSLPSWLTNDYWTLSHQTGDLFAQSVPYLCGIPVVFNLPAALIIIAITAVLVIGIKESARFNSIIVGIKLAVILLVIGVGWFYVKRDNWGNSFETFAPFGIGGIGTGAAYVFFAYIGFDAVSTTAQEARNPKRDVPIGIIVSLVLCTILYIAVTAVLTGMVYYKDINIDAPLADAFTRYGLTRVSFFISVGAVAGLTSVLLVLLLSQSRIFWAIARDGLLPERIFAAVHPRFGTPYISTIIVGACVALTACCFPIEEIAKLVNIGTLLAFCLVSAAVIILRVKDPCHPRAFKCPFVPVIPILGILSCGYMMIRLEFSTWLRLLVWLALGTIIYAVYGRRHSKLARKYALVTKKNEALVELNKSYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZY1</accession>
    <name>A0A0M2UZY1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ribosomal protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00111</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000015">
        <property type="protein sequence ID" value="KKO21150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21150">
        <property type="protein sequence ID" value="KKO21150"/>
        <property type="gene ID" value="BROFUL_00111"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd16377">
        <property type="entry name" value="23S_rRNA_IVP_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1440.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012657">
        <property type="entry name" value="23S_rRNA-intervening_sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036583">
        <property type="entry name" value="23S_rRNA_IVS_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38471">
        <property type="entry name" value="PTHR38471"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05635">
        <property type="entry name" value="23S_rRNA_IVP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158446">
        <property type="entry name" value="SSF158446"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02436">
        <property type="entry name" value="TIGR02436"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="132" mass="15216" checksum="860CDBF7F6643BB0" modified="2015-11-11" version="1">MKITKFEDLLCWQEARVPVNTVYAAIRNSPSFQKDFRLSGQITGAAISSMSNIAEGFSRRSNKEFIQYLFISKSSATEVQSETYVASDQKYISQEIFEKIYNQAEKVSKLNSGFITYLLDNEKRYKKSRKPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0A3</accession>
    <name>A0A0M2V0A3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00652</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000087">
        <property type="protein sequence ID" value="KKO20616.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20616">
        <property type="protein sequence ID" value="KKO20616"/>
        <property type="gene ID" value="BROFUL_00652"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20616.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="98" mass="10937" checksum="0FDFBCDCFC3F1EE8" modified="2015-11-11" version="1">MIIENQPPPPHNPEGEMICVIPPGFKYNFILPCYNHVILRDCTASSTFIHFEFPMLLADKLLVAGYKPKSRYGISVNHYAANASLSSLIISFILSPKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0R7</accession>
    <name>A0A0M2V0R7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_00520</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the peptidase M16 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000071">
        <property type="protein sequence ID" value="KKO20761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20761">
        <property type="protein sequence ID" value="KKO20761"/>
        <property type="gene ID" value="BROFUL_00520"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011249">
        <property type="entry name" value="Metalloenz_LuxS/M16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011765">
        <property type="entry name" value="Pept_M16_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001431">
        <property type="entry name" value="Pept_M16_Zn_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007863">
        <property type="entry name" value="Peptidase_M16_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00675">
        <property type="entry name" value="Peptidase_M16"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05193">
        <property type="entry name" value="Peptidase_M16_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63411">
        <property type="entry name" value="SSF63411"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00143">
        <property type="entry name" value="INSULINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="49"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M16" evidence="4">
        <location>
            <begin position="103"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M16_C" evidence="5">
        <location>
            <begin position="256"/>
            <end position="434"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M16" evidence="4">
        <location>
            <begin position="539"/>
            <end position="681"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M16_C" evidence="5">
        <location>
            <begin position="697"/>
            <end position="739"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU004447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00675"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF05193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="879" mass="99272" checksum="BECE188FA82F08C7" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0X3</accession>
    <name>A0A0M2V0X3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Trehalose 6-phosphate phosphatase</fullName>
            <ecNumber evidence="3">3.1.3.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00462</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Removes the phosphate from trehalose 6-phosphate to produce free trehalose.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>alpha,alpha-trehalose 6-phosphate + H2O = alpha,alpha-trehalose + phosphate</text>
            <dbReference type="Rhea" id="RHEA:23420"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16551"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58429"/>
            <dbReference type="EC" id="3.1.3.12"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1 3">Glycan biosynthesis; trehalose biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the trehalose phosphatase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.12" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000061">
        <property type="protein sequence ID" value="KKO20806.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20806">
        <property type="protein sequence ID" value="KKO20806"/>
        <property type="gene ID" value="BROFUL_00462"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00299"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004805">
        <property type="term" value="F:trehalose-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005992">
        <property type="term" value="P:trehalose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006379">
        <property type="entry name" value="HAD-SF_hydro_IIB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044651">
        <property type="entry name" value="OTSB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003337">
        <property type="entry name" value="Trehalose_PPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43768">
        <property type="entry name" value="PTHR43768"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02358">
        <property type="entry name" value="Trehalose_PPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01484">
        <property type="entry name" value="HAD-SF-IIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00685">
        <property type="entry name" value="T6PP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005199"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU361117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20806.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="281" mass="32205" checksum="8D910B8D73ADE8C9" modified="2015-11-11" version="1">MKYAFDHLQAIRELLLAHDKITLLTDFDGTLTPIQEHPDLAILSEDIRQILLKFSQSRIFFLGIITGRSLRQIKKLVNIPKILYAANHGIELEGPGIRFSCAEAKKARYNLWHVYMRLFNALRHIEGIYLEDKGYAVSLHYRLVKKARDTEFVTKTLDSIIKPYLEKKILSLCTGKMVYEIRPPVTWNKATTIQWLLTNYLPLAFSGDALLVYLGDDQADIEVFTALSGKKLTIFVGTPTDTSAADYYVHSPEEVKSFLEFLYKQKDEGHHDLLTEGKRAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V126</accession>
    <name>A0A0M2V126_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Superoxide dismutase</fullName>
            <ecNumber evidence="2">1.15.1.1</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">sod</name>
        <name evidence="2" type="ORF">BROFUL_00870</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.15.1.1" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000106">
        <property type="protein sequence ID" value="KKO20399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20399">
        <property type="protein sequence ID" value="KKO20399"/>
        <property type="gene ID" value="BROFUL_00870"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1099"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004784">
        <property type="term" value="F:superoxide dismutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019832">
        <property type="entry name" value="Mn/Fe_SOD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036324">
        <property type="entry name" value="Mn/Fe_SOD_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036314">
        <property type="entry name" value="SOD_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02777">
        <property type="entry name" value="Sod_Fe_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46609">
        <property type="entry name" value="SSF46609"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54719">
        <property type="entry name" value="SSF54719"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sod_Fe_C" evidence="1">
        <location>
            <begin position="126"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20399.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="179" mass="19933" checksum="57F5C0BED3F4F3E0" modified="2015-11-11" version="1">MLDRREFLTITGAGGAALLFGIPNPILASTEKEEKTMPYTAKDYAKLIGMEGFSETLLKNHFTLYQGYVTNTNKALDILGQMLKDGKTATPEFAELKRRLGWEFNGMRLHEYYFENLGKKGGINKEGALAKKITEEFGSYEMWEKDFKAVGAMRGIGWLSFIRTTPMGGLSTSGSTSMT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V150</accession>
    <name>A0A0M2V150_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00864</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000105">
        <property type="protein sequence ID" value="KKO20439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20439">
        <property type="protein sequence ID" value="KKO20439"/>
        <property type="gene ID" value="BROFUL_00864"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="42" mass="4970" checksum="E40299487FFF6268" modified="2015-11-11" version="1" fragment="single">MTVTMHFDGTLYVVIASEAKQSFTHKKRYLLKGAYEKTYKKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V166</accession>
    <name>A0A0M2V166_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative NADH:flavin oxidoreductase/NADH oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00371</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the N-terminal section; belongs to the NADH:flavin oxidoreductase/NADH oxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000047">
        <property type="protein sequence ID" value="KKO20901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20901">
        <property type="protein sequence ID" value="KKO20901"/>
        <property type="gene ID" value="BROFUL_00371"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.460"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001155">
        <property type="entry name" value="OxRdtase_FMN_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00724">
        <property type="entry name" value="Oxidored_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Oxidored_FMN" evidence="2">
        <location>
            <begin position="4"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="domain" description="Pyr_redox_2" evidence="3">
        <location>
            <begin position="377"/>
            <end position="642"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20901.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="674" mass="74348" checksum="DAE4F8CCFEA6B540" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1D0</accession>
    <name>A0A0M2V1D0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative competence protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00296</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000035">
        <property type="protein sequence ID" value="KKO20961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20961">
        <property type="protein sequence ID" value="KKO20961"/>
        <property type="gene ID" value="BROFUL_00296"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004509">
        <property type="entry name" value="Competence_ComEA_HhH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003583">
        <property type="entry name" value="Hlx-hairpin-Hlx_DNA-bd_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010994">
        <property type="entry name" value="RuvA_2-like"/>
    </dbReference>
    <dbReference type="SMART" id="SM00278">
        <property type="entry name" value="HhH1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47781">
        <property type="entry name" value="SSF47781"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00426">
        <property type="entry name" value="TIGR00426"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644366" evidence="1">
        <location>
            <begin position="24"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="HhH1" evidence="2">
        <location>
            <begin position="44"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="domain" description="HhH1" evidence="2">
        <location>
            <begin position="74"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="119" mass="12968" checksum="9312FCCF8351CE6A" modified="2015-11-11" version="1">MREAKKLLCAVVFLFAIAFVCQAHTGFCGAQIEGKVNINTATEDQISILPGVGPKLASEVVNYRKINGDFKEVEEIKNVNGVGDKKFEKMKDFIAVEGDTTITSTKVAKGEKVKKGDMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1H4</accession>
    <name>A0A0M2V1H4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7">50S ribosomal protein L9</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rplI</name>
        <name evidence="10" type="ORF">BROFUL_00687</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Binds to the 23S rRNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the bacterial ribosomal protein bL9 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20569">
        <property type="protein sequence ID" value="KKO20569"/>
        <property type="gene ID" value="BROFUL_00687"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.874"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.430.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.5.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00503">
        <property type="entry name" value="Ribosomal_L9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000244">
        <property type="entry name" value="Ribosomal_L9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009027">
        <property type="entry name" value="Ribosomal_L9/RNase_H1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020594">
        <property type="entry name" value="Ribosomal_L9_bac/chp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020069">
        <property type="entry name" value="Ribosomal_L9_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036791">
        <property type="entry name" value="Ribosomal_L9_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020070">
        <property type="entry name" value="Ribosomal_L9_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036935">
        <property type="entry name" value="Ribosomal_L9_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21368">
        <property type="entry name" value="PTHR21368"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03948">
        <property type="entry name" value="Ribosomal_L9_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01281">
        <property type="entry name" value="Ribosomal_L9_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55653">
        <property type="entry name" value="SSF55653"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55658">
        <property type="entry name" value="SSF55658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00158">
        <property type="entry name" value="L9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00651">
        <property type="entry name" value="RIBOSOMAL_L9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 7 10" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 7" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="RIBOSOMAL_L9" evidence="9">
        <location>
            <begin position="13"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="8">
        <location>
            <begin position="44"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00029520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00503"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS00651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO20569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="155" mass="17109" checksum="ADDDE0FE8E7098ED" modified="2015-11-11" version="1">MELLLKKNVDKLGRIGDIVKVKEGYARNYLLPQGLATNVSPANLKQIEKEKIKMELQLKEERAQLQGILEKISAASCTILVKANEEGRLFGSVTAIQIAESLTKEGYPVSHEMVRLDSPIKVCGDFDITIALNLELQTKCKVAVVKEDTGTPENT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1I3</accession>
    <name>A0A0M2V1I3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00698</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20579">
        <property type="protein sequence ID" value="KKO20579"/>
        <property type="gene ID" value="BROFUL_00698"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="30"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="52" mass="5942" checksum="A2E4DD8E0CCDC9D7" modified="2015-11-11" version="1">MSFAKILQLIGIILALNALYFGIAQDSMKTEVLLLFLGGMIFYVGRMFEKRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1I5</accession>
    <name>A0A0M2V1I5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Heme exporter protein C</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">ccsA_1</name>
        <name evidence="10" type="ORF">BROFUL_00255</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the CcmC/CycZ/HelC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000031">
        <property type="protein sequence ID" value="KKO21006.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21006">
        <property type="protein sequence ID" value="KKO21006"/>
        <property type="gene ID" value="BROFUL_00255"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015232">
        <property type="term" value="F:heme transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017004">
        <property type="term" value="P:cytochrome complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002541">
        <property type="entry name" value="Cyt_c_assembly"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003557">
        <property type="entry name" value="Cyt_c_biogenesis_CcmC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017562">
        <property type="entry name" value="Cyt_c_biogenesis_CcsA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045062">
        <property type="entry name" value="Cyt_c_biogenesis_CcsA/CcmC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30071">
        <property type="entry name" value="PTHR30071"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01578">
        <property type="entry name" value="Cytochrom_C_asm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01386">
        <property type="entry name" value="CCMCBIOGNSIS"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03144">
        <property type="entry name" value="cytochr_II_ccsB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0201">Cytochrome c-type biogenesis</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="31"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="61"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="88"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="128"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="176"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="214"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="245"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrom_C_asm" evidence="9">
        <location>
            <begin position="61"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00016463"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01578"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO21006.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="281" mass="31988" checksum="35299F00433303AB" modified="2015-11-11" version="1">MSIINITLIVYIIASVAYIAREIWRSTSIKWVSLGLLILAFCLNLTMVIKRSVEAGHPPFSNLYESLVFYACCTAFVYIIFEFVYNFRVVGALASVLAMLILLYATLQDDSIRPIMPALKSNWMLVHVITYMIGYAAFGISFVTSIIFLVVKPFAKKEIKEARDEREILPRNFDKLSYKIVAFGFPFLTLGLVTGAVWAKKAWGDYWSWDPKETWSLITWFAYLVYLHTPLILPKMNVNKSKASVILACWLLFSFGIVNFTFVGLNYLPSASDSEHIYGSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1J5</accession>
    <name>A0A0M2V1J5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative 4-hydroxybenzoate polyprenyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00265</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000031">
        <property type="protein sequence ID" value="KKO21016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21016">
        <property type="protein sequence ID" value="KKO21016"/>
        <property type="gene ID" value="BROFUL_00265"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.323"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016765">
        <property type="term" value="F:transferase activity, transferring alkyl or aryl (other than methyl) groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd13959">
        <property type="entry name" value="PT_UbiA_COQ2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.357.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039653">
        <property type="entry name" value="Prenyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000537">
        <property type="entry name" value="UbiA_prenyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044878">
        <property type="entry name" value="UbiA_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11048">
        <property type="entry name" value="PTHR11048"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01040">
        <property type="entry name" value="UbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="61"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="97"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="139"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="162"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="189"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO21016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="219" mass="24694" checksum="60A031768200EC18" modified="2015-11-11" version="1">MLLSLWQVYLPYTVPTPFLINTRPDTIISPIILNNQRKVLATRRINSRKTMMILSTLLRRLISILDLIKFSHTLFSFPFAVMSAFLAADGIPGLKQLLLILAALVTARSAAMSFNRLVDTAYDIHNPRTAYRVVLQRNIGRSSVWVFTILCVIFFFTCAWMLNQLAFFMAPLAILIIFGYSYTKRFTHFSHFVLGLALGLSPVGAWVGIQGTLTAVPFC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1U0</accession>
    <name>A0A0M2V1U0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter ATP-binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_00586</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000082">
        <property type="protein sequence ID" value="KKO20679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20679">
        <property type="protein sequence ID" value="KKO20679"/>
        <property type="gene ID" value="BROFUL_00586"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03220">
        <property type="entry name" value="ABC_KpsT_Wzt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd10147">
        <property type="entry name" value="Wzt_C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015860">
        <property type="entry name" value="ABC_transpr_TagH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029439">
        <property type="entry name" value="Wzt_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14524">
        <property type="entry name" value="Wzt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="30"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="62"/>
            <end position="69"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20679.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="416" mass="46054" checksum="54F0D146D847D91C" modified="2015-11-11" version="1">MTAILTVESASKRYRIQRHRPTSIKDSIIGRLKGLHRKDNFFWALRDVSFSVEHGLKLGIIGHNGAGKSTLLRLLCGLGRPTTGRIHCKGQVSGLLELGSGFHPDMTGRENLVTGGILSGLTKRQVLAKQEEIIAFAELEECIDHTVRTYSSGMYLRLAFAAAIHFDPDVLIIDEVLAVGDSRFQKKCLERLAAFQAKGKTTILTSHDTEQIRNLCDEVLVLEEGRAVMLGDPEKALQCYNDLMRQRTEKRAALLSGGATQTNLVVEHGSRMGTLEASVCAVRLYDTQRRATNTIHSGDSLIIELEYRLTKPLPDVALTLGIYTEANTKCFEFCVASAVTTVGSLTNAGRLRCQLPELPLLPGLYYLNIGLYPPDWNYVYDYHWQMHPLHVLSASEGYSGISGVISVKPVWSVVKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2B3</accession>
    <name>A0A0M2V2B3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">2Fe-2S iron sulfur protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_00004</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000001">
        <property type="protein sequence ID" value="KKO21266.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21266">
        <property type="protein sequence ID" value="KKO21266"/>
        <property type="gene ID" value="BROFUL_00004"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.102.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017941">
        <property type="entry name" value="Rieske_2Fe-2S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036922">
        <property type="entry name" value="Rieske_2Fe-2S_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014349">
        <property type="entry name" value="Rieske_Fe-S_prot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005805">
        <property type="entry name" value="Rieske_Fe-S_prot_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10134">
        <property type="entry name" value="PTHR10134"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00355">
        <property type="entry name" value="Rieske"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00162">
        <property type="entry name" value="RIESKE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50022">
        <property type="entry name" value="SSF50022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51296">
        <property type="entry name" value="RIESKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="domain" description="Rieske" evidence="8">
        <location>
            <begin position="56"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO21266.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="168" mass="18949" checksum="C6547BE126DE6E78" modified="2015-11-11" version="1">MIEAAKPDEIIVSRRRILLAAGWAGIGIFVTTLLSAIARFFFPRTIIEPPTRYKIGYPPQYSEGVSERFKKQFRIWIVREVNRLYVIEAKCTHLGCTPNWLAAEGKFKCPCHGSGFTPDGINIEGPAPRPLERFKVALDADGQIIVDEAIRFRGERGEWEKAGAFLKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2R9</accession>
    <name>A0A0M2V2R9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00272</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000032">
        <property type="protein sequence ID" value="KKO20989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20989">
        <property type="protein sequence ID" value="KKO20989"/>
        <property type="gene ID" value="BROFUL_00272"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="80" mass="9324" checksum="068080B8F7877BFF" modified="2015-11-11" version="1">MVIHMRGSSNWYVVTKNVCSVCHTLSKAYYDNEIKRTRGLSSGSFRTYAEFEYCCVFYKKCNAVKVEVLSWIASNTRYTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V325</accession>
    <name>A0A0M2V325_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00190</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000021">
        <property type="protein sequence ID" value="KKO21079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21079">
        <property type="protein sequence ID" value="KKO21079"/>
        <property type="gene ID" value="BROFUL_00190"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="64" mass="7376" checksum="31A6EB07CCF3BC0A" modified="2015-11-11" version="1">MRASEKMRGSSPVQNAAFALLRDSARTAQLVVQQPDDLEEIWRLKEQVQKALNQLQRVLERAEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V3B7</accession>
    <name>A0A0M2V3B7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00120</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000015">
        <property type="protein sequence ID" value="KKO21159.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21159">
        <property type="protein sequence ID" value="KKO21159"/>
        <property type="gene ID" value="BROFUL_00120"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="83"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21159.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="103" mass="11712" checksum="21DB74977F93BEC9" modified="2015-11-11" version="1">MKWSSFAGNSSNDGLDKPFVFLLNTPERFLNIKQSCPLNKKTATCKLRLHVAVYSSTSGSEQQAFRLQFLFFHISKELIIHKTRGNPTQDRTNPPDIVMSKLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V3L9</accession>
    <name>A0A0M2V3L9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative thiamine biosynthesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00012</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000003">
        <property type="protein sequence ID" value="KKO21259.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21259">
        <property type="protein sequence ID" value="KKO21259"/>
        <property type="gene ID" value="BROFUL_00012"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016155">
        <property type="entry name" value="Mopterin_synth/thiamin_S_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010035">
        <property type="entry name" value="Thi_S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003749">
        <property type="entry name" value="ThiS/MoaD-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34472">
        <property type="entry name" value="PTHR34472"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02597">
        <property type="entry name" value="ThiS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54285">
        <property type="entry name" value="SSF54285"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01683">
        <property type="entry name" value="thiS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21259.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="66" mass="7381" checksum="49B595C98378D91C" modified="2015-11-11" version="1">MRVALNGEIKECPEGTTIEDLLDLYKIDKNRVAVELNLHIIPRKELSTRMLRDADALEVVTFVGGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ40</accession>
    <name>A0A0M2UQ40_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03101</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000286">
        <property type="protein sequence ID" value="KKO18203.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18203">
        <property type="protein sequence ID" value="KKO18203"/>
        <property type="gene ID" value="BROFUL_03101"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3830"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18203.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="249" mass="27777" checksum="F8B1F7BB963C8ABD" modified="2015-11-11" version="1">MKILENIKQPFWMGLVVLTAMLTMPGIVLSASKQKQNRGFTDSFMFDECTGFSSTGCNPFFILEPGHQLVLEGTEDNEEIKLIITVLDETQDITTNETGLVTTRIVEERESIDGELFEVSRNFFAICNRDNSVFYFGEDVDFYEDGVIVSHDGSWRAGVDGARAGIIMPGTILLGSRYFQEVAPDVAMDRAEILSINQVVKTPAEEFKNCLKTKETTPLEPNAKEFKFYAPGVGLIKDGVLLLTEINHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQL3</accession>
    <name>A0A0M2UQL3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03151</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000289">
        <property type="protein sequence ID" value="KKO18157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18157">
        <property type="protein sequence ID" value="KKO18157"/>
        <property type="gene ID" value="BROFUL_03151"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019270">
        <property type="entry name" value="DUF2283"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10049">
        <property type="entry name" value="DUF2283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="84" mass="9481" checksum="E7F03CF0B09A945A" modified="2015-11-11" version="1">MDKTKMAYFKEDDILHIVISEEKESDSIELSPNITAELNESGELIGIEILEASSFLRDSILESSQAKILKLKKPYNKLVEVTPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQX4</accession>
    <name>A0A0M2UQX4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02812</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000265">
        <property type="protein sequence ID" value="KKO18488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18488">
        <property type="protein sequence ID" value="KKO18488"/>
        <property type="gene ID" value="BROFUL_02812"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd06325">
        <property type="entry name" value="PBP1_ABC_unchar_transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007487">
        <property type="entry name" value="ABC_transpt-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35271">
        <property type="entry name" value="PTHR35271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04392">
        <property type="entry name" value="ABC_sub_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18488.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="311" mass="35134" checksum="F41D88F4D8B2D0FC" modified="2015-11-11" version="1">MPIILNAFIIAFIIVYINIPEILADEYQIAVLASRNESPYKEVIAGFQKTIIDQRRDTKCNVFIMENDKTQISQSFRDIKKIKPRVLFTVGTAPTVEALKVFTDIPVVATLVLDDDMILHARNATGVILSFPIETQFHLLKNFLPEAKKIGVIYNPAENREKIRSATIIAEKMGLDLHPVDVHSPKDIPKALKTLASGIDILWGINDALVFNSLTAKQILLFSFRNHVPFSGLSSTWVKAGALYALEYDFHDIGVQCGEKSLKILQGAKVNSLPVCLPRKLLYALNLRTARYMKIKFREEHIHNAYQIFDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQX9</accession>
    <name>A0A0M2UQX9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03254</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000298">
        <property type="protein sequence ID" value="KKO18055.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18055">
        <property type="protein sequence ID" value="KKO18055"/>
        <property type="gene ID" value="BROFUL_03254"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005643949" evidence="1">
        <location>
            <begin position="27"/>
            <end position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18055.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="233" mass="26224" checksum="3940E73138DEF32E" modified="2015-11-11" version="1">MHPVKYFSCKYAFILLIFLASSGCLSGQRPPVTISPQLDKRVRAVTPLPMSVGLYIAPHLRNYVQEAPIKQYEAGAQLYTFPDFVFPFGEPLAAKIEEMSNMLFTRVTVLDHLQNTANTPNGALDGILTVDLKSSDIELYIEQSVWRAIGRHNLSITASFFDLKQNKIWESDIAVEGKGLDFITSRVEQEWWATTGPRFGPAVEDSIQQITYELAKKITTAKEMTDYIATLKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR87</accession>
    <name>A0A0M2UR87_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Glutamine--scyllo-inositol transaminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03189</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the DegT/DnrJ/EryC1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18140">
        <property type="protein sequence ID" value="KKO18140"/>
        <property type="gene ID" value="BROFUL_03189"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3932"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00616">
        <property type="entry name" value="AHBA_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000653">
        <property type="entry name" value="DegT/StrS_aminotransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30244">
        <property type="entry name" value="PTHR30244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01041">
        <property type="entry name" value="DegT_DnrJ_EryC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000390">
        <property type="entry name" value="PLP_StrS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="186"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="2">
        <location>
            <position position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR000390-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000390-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU004508"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="368" mass="40624" checksum="3602104DDCE99751" modified="2015-11-11" version="1">MKVSSLDLKRQYETIREEINRAVLEVISSQSFILGPYVESFESKIAQFCCVKHALGVSSGTDALLLALMACDIKSGDEVITTPFTFFATASSIARVGAVPVFVDIDPLTYNIDVAKIAAAVTKKTKAILVVHLYGQCANMDVVLAIARAHGLVVIEDAAQAIGAVYKGKKAGSFGEIGCFSFYPTKNLGGYGDGGLITTNDDKLADFVKLLRVHGSKSKYYHSHIGINGRLDAIQAAVLSVKLNYLNGWSEKRRTVAAYYDKHLQDLPIRLPQTESYNTHIFHQYVIATPARDSLAKYLERHGIETAVYYPVPLHLQKCFEFLGYKKGDLPEAERASNETLALPIFPEITEKEQDQVIGHIRKFISQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URA1</accession>
    <name>A0A0M2URA1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Hydroxylamine oxidoreductase-copper oxidase fusion protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02908</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18402">
        <property type="protein sequence ID" value="KKO18402"/>
        <property type="gene ID" value="BROFUL_02908"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011706">
        <property type="entry name" value="Cu-oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045087">
        <property type="entry name" value="Cu-oxidase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011707">
        <property type="entry name" value="Cu-oxidase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033138">
        <property type="entry name" value="Cu_oxidase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002355">
        <property type="entry name" value="Cu_oxidase_Cu_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036280">
        <property type="entry name" value="Multihaem_cyt_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11709">
        <property type="entry name" value="PTHR11709"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07731">
        <property type="entry name" value="Cu-oxidase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07732">
        <property type="entry name" value="Cu-oxidase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48695">
        <property type="entry name" value="SSF48695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49503">
        <property type="entry name" value="SSF49503"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00079">
        <property type="entry name" value="MULTICOPPER_OXIDASE1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00080">
        <property type="entry name" value="MULTICOPPER_OXIDASE2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Plastocyanin-like" evidence="4">
        <location>
            <begin position="67"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="domain" description="Plastocyanin-like" evidence="3">
        <location>
            <begin position="213"/>
            <end position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07731"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF07732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="838" mass="95072" checksum="36B61B371CBFB9AF" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URL3</accession>
    <name>A0A0M2URL3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02777</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000264">
        <property type="protein sequence ID" value="KKO18507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18507">
        <property type="protein sequence ID" value="KKO18507"/>
        <property type="gene ID" value="BROFUL_02777"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="89"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="158"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="201" mass="22474" checksum="49EBAAAB28CB4543" modified="2015-11-11" version="1">MFIKWRTEFFSKNLFLLLVIASLALHAIIIFMSPQANQILSLKSLRDSFVREPSEYAVTLEIEDHESPVSKKEDELKKEEIPEKKKYKIFTDTSDNAEDEETSADTDKIGAKGAVAKDYFPDDQLPVNNEPHAEGHSRAPFLGKGNAGVPSDPRQQPPPEQAATAQVFVSENGSEGKTTPPRYANLPKGWKIKEVLPNRLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URN1</accession>
    <name>A0A0M2URN1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02797</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000264">
        <property type="protein sequence ID" value="KKO18527.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18527">
        <property type="protein sequence ID" value="KKO18527"/>
        <property type="gene ID" value="BROFUL_02797"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18527.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="50" mass="5699" checksum="77C2157CFFA13652" modified="2015-11-11" version="1">MREGLLRFACNDNVPYVIKNIASVIARVLSEAISRFHNGELFAAVPRYEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URQ7</accession>
    <name>A0A0M2URQ7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putative cytochrome c</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02750</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000257">
        <property type="protein sequence ID" value="KKO18552.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18552">
        <property type="protein sequence ID" value="KKO18552"/>
        <property type="gene ID" value="BROFUL_02750"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00034">
        <property type="entry name" value="Cytochrom_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13442">
        <property type="entry name" value="Cytochrome_CBB3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0349">Heme</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005643956" evidence="5">
        <location>
            <begin position="35"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="6">
        <location>
            <begin position="40"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="6">
        <location>
            <begin position="157"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18552.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="260" mass="28826" checksum="64C60F83797EE2A9" modified="2015-11-11" version="1">MKPKVLLDKVGFWCATTVTSAALMLSIAPVTASAVTIPTEVTDLGKDTYKKYCSPCHGEEGKGDGPLARSMLPKPRDFTRGAYKFRTTPSGSLPTDEDIYRTISYGVPNSTMIPWDILTEEQRVSVIPVLKSFSEAFEVRKPDAPVTVGLPLRPTERALAEGKKIYEEKLECWKCHGVEGRGDGPSAAEQEDDFGYPIKPFDFTTGKFKGGNSAQDVYLRFTTGLNGTPMPSFAKELTDEQRWCLTYYVMSLVKPEETKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URT7</accession>
    <name>A0A0M2URT7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Maltokinase</fullName>
            <ecNumber evidence="3">2.7.1.175</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Maltose-1-phosphate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02954</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + D-maltose = ADP + alpha-maltose 1-phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:31915"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17306"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:63576"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.175"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the aminoglycoside phosphotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.175" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000278">
        <property type="protein sequence ID" value="KKO18355.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18355">
        <property type="protein sequence ID" value="KKO18355"/>
        <property type="gene ID" value="BROFUL_02954"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3658"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040999">
        <property type="entry name" value="Mak_N_cap"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012811">
        <property type="entry name" value="TreS_maltokin_C_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18085">
        <property type="entry name" value="Mak_N_cap"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02457">
        <property type="entry name" value="TreS_Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mak_N_cap" evidence="6">
        <location>
            <begin position="2"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001537"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006219"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00031251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF18085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18355.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="516" mass="59283" checksum="2A7927303FA5E93D" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URZ8</accession>
    <name>A0A0M2URZ8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02926</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18420.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18420">
        <property type="protein sequence ID" value="KKO18420"/>
        <property type="gene ID" value="BROFUL_02926"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3620"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026669">
        <property type="entry name" value="Arsenite_MeTrfase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025714">
        <property type="entry name" value="Methyltranfer_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43675">
        <property type="entry name" value="PTHR43675"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13847">
        <property type="entry name" value="Methyltransf_31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltranfer_dom" evidence="1">
        <location>
            <begin position="56"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18420.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="383" mass="43205" checksum="0657D7E3E8D28A3A" modified="2015-11-11" version="1">MMTEQAVLNRYRMAASQKEELLCCPVTYDPQYLKIIPQEVLDRDYGCGDPSQYVRKGETVLDLGSGGGKICFIASQVVGPSGRIIGVDMNDEMLALARRANSEVSKRLGYTNVEFRKGKIQDLRIDRDALDAWLKRNPIKSESDLALLESYIQQIGETSPLIPDGSIDVVISNCVLNLVDHKEKTRLFREIYRALKRGGRAAISDIVSDEPVSLKLQQDPELWSGCVSGALQECEFLRAFEDAGFYGITIAKRDERPWRTVQGIEFRSITVLAYKGKEGPCRDHKESVVYKGPFQEITDDDGHRYRRGVRVSVCRKTFNILGREPYANFFEFIRPTKEIPEEHAQPFPCTGEMLVRSSRETKGEEYNITNEGNSSCCEPGSCC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US74</accession>
    <name>A0A0M2US74_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">YceI domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02644</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18692.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18692">
        <property type="protein sequence ID" value="KKO18692"/>
        <property type="gene ID" value="BROFUL_02644"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.128.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007372">
        <property type="entry name" value="Lipid/polyisoprenoid-bd_YceI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036761">
        <property type="entry name" value="TTHA0802/YceI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04264">
        <property type="entry name" value="YceI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00867">
        <property type="entry name" value="YceI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101874">
        <property type="entry name" value="SSF101874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YceI" evidence="1">
        <location>
            <begin position="19"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00867"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18692.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="186" mass="20363" checksum="247E1236998D65D1" modified="2015-11-11" version="1">MGVKEGSYHVTASSGKVCVYTFKEGFLSAVAHDLLIEATNFCADLHVPAGGMSLARVTAEIQANSLKVICAMKDGLQRHDLLKEKDKADIEEATSKDVLHPDKYPAITFRSINVKEKDGAYHVEGELTLHGVTRPAEIHARTTTGNDLKGKLVLSQKDFGIKPYKALLGTLKVKNEVEITFDLQLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US94</accession>
    <name>A0A0M2US94_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7">UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase</fullName>
            <ecNumber evidence="6 7">6.3.2.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">D-alanyl-D-alanine-adding enzyme</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">murF</name>
        <name evidence="11" type="ORF">BROFUL_02331</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 7">Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 7">
            <text>ATP + D-alanyl-D-alanine + UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptanedioate = ADP + H(+) + phosphate + UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine</text>
            <dbReference type="Rhea" id="RHEA:28374"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57822"/>
            <dbReference type="ChEBI" id="CHEBI:61386"/>
            <dbReference type="ChEBI" id="CHEBI:83905"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.10"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="6 7">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6 7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the MurCDEF family. MurF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.10" evidence="6 7"/>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18938">
        <property type="protein sequence ID" value="KKO18938"/>
        <property type="gene ID" value="BROFUL_02331"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2896"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047480">
        <property type="term" value="F:UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008766">
        <property type="term" value="F:UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02019">
        <property type="entry name" value="MurF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036565">
        <property type="entry name" value="Mur-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004101">
        <property type="entry name" value="Mur_ligase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036615">
        <property type="entry name" value="Mur_ligase_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013221">
        <property type="entry name" value="Mur_ligase_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000713">
        <property type="entry name" value="Mur_ligase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035911">
        <property type="entry name" value="MurE/MurF_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005863">
        <property type="entry name" value="UDP-N-AcMur_synth"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01225">
        <property type="entry name" value="Mur_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02875">
        <property type="entry name" value="Mur_ligase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08245">
        <property type="entry name" value="Mur_ligase_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53244">
        <property type="entry name" value="SSF53244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53623">
        <property type="entry name" value="SSF53623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63418">
        <property type="entry name" value="SSF63418"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01143">
        <property type="entry name" value="murF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6 7" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="1 6 7" id="KW-0132">Cell division</keyword>
    <keyword evidence="2 6 7" id="KW-0133">Cell shape</keyword>
    <keyword evidence="5 6 7" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3 6 7" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mur_ligase" evidence="8">
        <location>
            <begin position="26"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_M" evidence="10">
        <location>
            <begin position="112"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_C" evidence="9">
        <location>
            <begin position="323"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="114"/>
            <end position="120"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF08245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO18938.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="472" mass="52044" checksum="FABEA52DAEE9D136" modified="2015-11-11" version="1">MEALYFSEIVEAVDGQTLSGGKNVRVTGVSTDSRTVQTGDIFFALQGERVDGHRYVVPAVKSGAVCAVVSCSENIDWGEVHFPLIRVKETVTALGDLARYYRKKLPTRIIAITGSNGKTTTKEMTYHVLSHFGSGVRSQKSFNNYIGVPVSIFEIENKHQYGILEMGTNAPGEIRRLSEIGAPEVAVILNVSQTHLEGLGSIEGVASAKGEILENLSREGAFVYNADNLWCVRIADGFKGKKVSFGFSPHAQIRCTNAKKEGAGYRLVINERLEMYLPVPGYHNINNCLASFAVCHALGHDIYQPKEVFSSFRLPHMRIEHQRMGNITFINDAYNANPESVRAALDYLKEIDVKGRKVFICGDMLELGTKAVQFHREIGERVAGLGIDALWTVGKYAAEIAKAAKLAGMPERCVLSFQDVADITVSEMNEFREDDTVLIKGSRGMHMEKIIEKYKMARKGCIHSTSDALIGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USC0</accession>
    <name>A0A0M2USC0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Tetratricopeptide repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02569</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000238">
        <property type="protein sequence ID" value="KKO18737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18737">
        <property type="protein sequence ID" value="KKO18737"/>
        <property type="gene ID" value="BROFUL_02569"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13174">
        <property type="entry name" value="TPR_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="856"/>
            <end position="889"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1196" mass="136996" checksum="C4189160529A96D3" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USG4</accession>
    <name>A0A0M2USG4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Molecular chaperone Hsp31 and glyoxalase 3</fullName>
            <ecNumber evidence="2">4.2.1.130</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">hchA</name>
        <name evidence="2" type="ORF">BROFUL_02723</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.130" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000253">
        <property type="protein sequence ID" value="KKO18575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18575">
        <property type="protein sequence ID" value="KKO18575"/>
        <property type="gene ID" value="BROFUL_02723"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3368"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019172">
        <property type="term" value="F:glyoxalase III activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002818">
        <property type="entry name" value="DJ-1/PfpI"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01965">
        <property type="entry name" value="DJ-1_PfpI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DJ-1_PfpI" evidence="1">
        <location>
            <begin position="6"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="212" mass="24017" checksum="00F236C449F34C69" modified="2015-11-11" version="1">MHFVKKVEAAGYQVDYVSPRGGYTPIDPHSLAMADDTDWTWYQTKEFMNRLGATLKPSEVKPDDYVAIYFAGGHGVIWDFPDNEELQAISRRIYESGGYVSSVCHGAAGLLNIKMSDGTLLVKGKKVTGFSNEEEKLAELDKYVPFLTETELVNRGAIYTRRMSLGQHMLLKTGDSLVAKTRLRVMPSLNCCSRLLREVPNNRLQRMAYRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USY5</accession>
    <name>A0A0M2USY5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02557</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000238">
        <property type="protein sequence ID" value="KKO18725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18725">
        <property type="protein sequence ID" value="KKO18725"/>
        <property type="gene ID" value="BROFUL_02557"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="105"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="136"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="195"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="230"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="281"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="319"/>
            <end position="340"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="341" mass="38677" checksum="731D08BAB4B9D487" modified="2015-11-11" version="1">MIINIYTLIMLFVAFLSLFLGGFLFYAVIMMIPGFKSTIPLETKSAYEQKGYLVFLLACVILSVRMLAWPWFYFMLQSFVPEVPGAMCMFGVTQILPATVTFLQIIKPISFFIMGGWLLCYYVDKSVPTSPLARRNGYFLLIACVVLLVDSITDISYVLRMKPLMSVSCCATFFDVPMRPSAMIPQAIFGRHFQVILFVLYYLTNIFLIVSLFVILSQKWLFFTAHTRKILLFSLAVTGVVNIPVVIYAFIENIIPRLMQLPYHHCIYCFMGKGVVPDAPIMLGLFVIGTFAMGWMGILRMLCMQAETQSVTEHLIKKVNGLSAFCLLASLMMVTIHLIFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT53</accession>
    <name>A0A0M2UT53_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glutaredoxin-like protein</fullName>
            <ecNumber evidence="2">1.20.99.1</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">nrd</name>
        <name evidence="2" type="ORF">BROFUL_02038</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.20.99.1" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19238.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19238">
        <property type="protein sequence ID" value="KKO19238"/>
        <property type="gene ID" value="BROFUL_02038"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050612">
        <property type="term" value="F:arsenate reductase (donor) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097573">
        <property type="term" value="F:glutathione oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002109">
        <property type="entry name" value="Glutaredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00462">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glutaredoxin" evidence="1">
        <location>
            <begin position="7"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19238.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="84" mass="9731" checksum="69F37F3E62B99E04" modified="2015-11-11" version="1">MATNKLKVFCTPFCPKCNELLVYLNERKADYVSFDIDKDDRARKEIIKIVGNDDVESLDKLPIVVAGDKVLYGFDKKEIDKYLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTD2</accession>
    <name>A0A0M2UTD2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Thiamine biosynthesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_02193</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000218">
        <property type="protein sequence ID" value="KKO19097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19097">
        <property type="protein sequence ID" value="KKO19097"/>
        <property type="gene ID" value="BROFUL_02193"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2736"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038521">
        <property type="entry name" value="ThiC/Bza_core_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002817">
        <property type="entry name" value="ThiC/BzaA/B"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30557">
        <property type="entry name" value="PTHR30557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01964">
        <property type="entry name" value="ThiC_Rad_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00407">
        <property type="entry name" value="phosphomethylpyrimidine_syntha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00190">
        <property type="entry name" value="thiC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="8" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="443" mass="48734" checksum="0272038FD0F91CF5" modified="2015-11-11" version="1">MKTQLELAREGIITEAMKEAAVYDDVSPEFIREGIAKGQIVIYGNPNRKARVVGIGKGLKTKVNASIGTSPDIVDIDMEIKKAQTAEKYGADTLMELSTGGDLTRIRKQVLDSISLTVGTVPLYQAAIETDKKKGSVVHMEADFLFDVIEQQAEEGIGFMAIHCGINLITLERLKKQGYRYGGLVSRGGSFLTAWMNHNKKENPLYEQIDRLIDIMKKHDVILSLGNGLRAGAIHDSTDRAQIQELIINSEIAEYAQSKGVQIIVEGPGHIPIDEIEANVLIQKRLSNNAPFYMLGPITTDVAPGYDHISSAIGAALSSCYGADFICYVTPPEHLALPGPDDVREGVMAARIAAHVGDMVKLKDKAKNLDLKMGIARRDLDWNTQYETAITKERAQEIRNSRPPMDEDTCTMCGSLCSLKGVMKYYEQDLKKSRKRSATTAAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTF8</accession>
    <name>A0A0M2UTF8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01937</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000198">
        <property type="protein sequence ID" value="KKO19353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19353">
        <property type="protein sequence ID" value="KKO19353"/>
        <property type="gene ID" value="BROFUL_01937"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2410"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008203">
        <property type="entry name" value="AF2212-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024069">
        <property type="entry name" value="AF2212-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01954">
        <property type="entry name" value="DUF104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="78" mass="9102" checksum="82DF3A909DDFA78C" modified="2015-11-11" version="1">MSKTFHVIYDGKVLRPEGPVDLEPNTHYVVTIERKELSETHDLWNVLGSLTGKVEGHEDWSQEHDHYLYGTPKRQKDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTJ5</accession>
    <name>A0A0M2UTJ5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase</fullName>
            <ecNumber evidence="10">2.4.1.227</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">murG</name>
        <name evidence="13" type="ORF">BROFUL_02328</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc-(pentapeptide)GlcNAc (lipid intermediate II).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>di-trans-octa-cis-undecaprenyl diphospho-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine + UDP-N-acetyl-alpha-D-glucosamine = di-trans-octa-cis-undecaprenyl diphospho-[N-acetyl-alpha-D-glucosaminyl-(1-&gt;4)]-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine + H(+) + UDP</text>
            <dbReference type="Rhea" id="RHEA:31227"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
            <dbReference type="ChEBI" id="CHEBI:58223"/>
            <dbReference type="ChEBI" id="CHEBI:61387"/>
            <dbReference type="ChEBI" id="CHEBI:61388"/>
            <dbReference type="EC" id="2.4.1.227"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="10">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell membrane</location>
            <topology evidence="10">Peripheral membrane protein</topology>
            <orientation evidence="10">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the glycosyltransferase 28 family. MurG subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.227" evidence="10"/>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18935">
        <property type="protein sequence ID" value="KKO18935"/>
        <property type="gene ID" value="BROFUL_02328"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2893"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051991">
        <property type="term" value="F:UDP-N-acetyl-D-glucosamine:N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol 4-beta-N-acetylglucosaminlytransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050511">
        <property type="term" value="F:undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030259">
        <property type="term" value="P:lipid glycosylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00033">
        <property type="entry name" value="MurG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006009">
        <property type="entry name" value="GlcNAc_MurG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007235">
        <property type="entry name" value="Glyco_trans_28_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004276">
        <property type="entry name" value="GlycoTrans_28_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04101">
        <property type="entry name" value="Glyco_tran_28_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03033">
        <property type="entry name" value="Glyco_transf_28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01133">
        <property type="entry name" value="murG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 10" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="2 10" id="KW-0132">Cell division</keyword>
    <keyword evidence="1 10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 10" id="KW-0133">Cell shape</keyword>
    <keyword evidence="9 10" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="3 10" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="7 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 10" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 10 13" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_transf_28" evidence="11">
        <location>
            <begin position="4"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_tran_28_C" evidence="12">
        <location>
            <begin position="174"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="109"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="151"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="181"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="281"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF03033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF04101"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO18935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="360" mass="39865" checksum="7C2B56F7FC153C48" modified="2015-11-11" version="1">MVGLSAAEEIRSRFHDAEIVFFGSDKKFERRCVEQKGYRYCQVRAVKWGKSLKHRLACVGSLLLGIFDALFAVRNFNPDIVVGLGGYTSVAPVIAAKLLGISSVILEQNVIPGKANRFLSRWVDEVYCHWRGPLKWFTKAKVVRVTGTPIRKDILSSKKIRSAEKFGLSASKKTILITGGSQGAQAINETFLRCLPKLESLQNDLQIIHCTGEYGYDIAKAAYKKTKMDVFVCSFLDDMGAAFSMADIVICRAGATTIAEITAVGIPAILIPYPHAADNHQYWNAMELVSNGGGYLLQQLDLTPEKIIELVTDILDNKEKYDRMRMFSRKMGIPNAASNVVDNMCRLIGLKSAQFALIVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTL6</accession>
    <name>A0A0M2UTL6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01875</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000194">
        <property type="protein sequence ID" value="KKO19413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19413">
        <property type="protein sequence ID" value="KKO19413"/>
        <property type="gene ID" value="BROFUL_01875"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="31"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="63"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="88"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="120"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="161" mass="18364" checksum="8479CF9EA4806B86" modified="2015-11-11" version="1">MHLLLLVSLFYLVKFEVDENDPIQHAQRVGKVANLTIFLGILGIILSVLALTISHGLAQRGYGFGYLTTGLFMIALGYGIRYRSQHCLYASIALFVALSCNFLVRFLIQHTTYLTLRFALCCWVSFRLICVIPSMRVLVATKVFPDKNNRFLKLFLKQKRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTY9</accession>
    <name>A0A0M2UTY9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01996</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000202">
        <property type="protein sequence ID" value="KKO19282.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19282">
        <property type="protein sequence ID" value="KKO19282"/>
        <property type="gene ID" value="BROFUL_01996"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19282.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="271" mass="30196" checksum="F79CE81800A4FBF1" modified="2015-11-11" version="1">MAGDAYGWEELCNTDKDDYAKVYRVRHLFCHGTASVSDYGSLCDKRHGYENGDEESDGNGYEDGHGDGYHRGAWRHDLMGLYKPYLDNPDAPAKKLTVGIGLKLPTGKNDDETDSGNLAHAVMQAGTGSWDPLFLINYLHTLSPVVFQANLLYHATTEGDEGYEFGDKVSLDLIARYLLTSYVNPGLELNLFYAGQDTDHDDRYSRPDESLLDNTDNTGITSVSITPSLQIRMPKTGGSIDLKFQQPLYQHARGIQQVVDWRAMASIVWAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU40</accession>
    <name>A0A0M2UU40_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Site-specific DNA-methyltransferase (adenine-specific)</fullName>
            <ecNumber evidence="2">2.1.1.72</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_03310</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 2'-deoxyadenosine in DNA + S-adenosyl-L-methionine = an N(6)-methyl-2'-deoxyadenosine in DNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:15197"/>
            <dbReference type="Rhea" id="RHEA-COMP:12418"/>
            <dbReference type="Rhea" id="RHEA-COMP:12419"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:90615"/>
            <dbReference type="ChEBI" id="CHEBI:90616"/>
            <dbReference type="EC" id="2.1.1.72"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.72" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000302">
        <property type="protein sequence ID" value="KKO17999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17999">
        <property type="protein sequence ID" value="KKO17999"/>
        <property type="gene ID" value="BROFUL_03310"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4079"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008170">
        <property type="term" value="F:N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009007">
        <property type="term" value="F:site-specific DNA-methyltransferase (adenine-specific) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003356">
        <property type="entry name" value="DNA_methylase_A-5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007569">
        <property type="entry name" value="DUF559"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038333">
        <property type="entry name" value="T1MK-like_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04480">
        <property type="entry name" value="DUF559"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02384">
        <property type="entry name" value="N6_Mtase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N6_Mtase" evidence="3">
        <location>
            <begin position="48"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="domain" description="DUF559" evidence="4">
        <location>
            <begin position="327"/>
            <end position="431"/>
        </location>
    </feature>
    <feature type="domain" description="N6_Mtase" evidence="3">
        <location>
            <begin position="449"/>
            <end position="531"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF04480"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO17999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="570" mass="64542" checksum="7665E4297E39C790" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU47</accession>
    <name>A0A0M2UU47_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CHAT domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02786</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000264">
        <property type="protein sequence ID" value="KKO18516.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18516">
        <property type="protein sequence ID" value="KKO18516"/>
        <property type="gene ID" value="BROFUL_02786"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024983">
        <property type="entry name" value="CHAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12770">
        <property type="entry name" value="CHAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CHAT" evidence="1">
        <location>
            <begin position="2"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18516.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="233" mass="25760" checksum="3D75EAA28A335CC0" modified="2015-11-11" version="1">MLLGRQASYKRVLDEMRDGYDIVHLAGVAYVEDGESVVPLHDGYVRASELAALLIRNPPGLLYVDADWSGFVPVFGNERPLSQDGSDAFGDFYHRMQQRRPGLERVVARAGVGTFIGCMAPSRENVAREIAVAFYSHLLAGRPVAQSLFLARAPSQSETTEPHCSSRWPAILTSASQTQKQPFPNIRHALAERRGAGARTPDPDQSRGHHGFLSLLFPVIPVDNHRFTDNEEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU51</accession>
    <name>A0A0M2UU51_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_02791</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000264">
        <property type="protein sequence ID" value="KKO18521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18521">
        <property type="protein sequence ID" value="KKO18521"/>
        <property type="gene ID" value="BROFUL_02791"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3451"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1780.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019489">
        <property type="entry name" value="Clp_ATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036628">
        <property type="entry name" value="Clp_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004176">
        <property type="entry name" value="Clp_R_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001270">
        <property type="entry name" value="ClpA/B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018368">
        <property type="entry name" value="ClpA/B_CS1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041546">
        <property type="entry name" value="ClpA/ClpB_AAA_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001943">
        <property type="entry name" value="UVR_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07724">
        <property type="entry name" value="AAA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17871">
        <property type="entry name" value="AAA_lid_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02861">
        <property type="entry name" value="Clp_N"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10431">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00300">
        <property type="entry name" value="CLPPROTEASEA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM01086">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81923">
        <property type="entry name" value="SSF81923"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51903">
        <property type="entry name" value="CLP_R"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00870">
        <property type="entry name" value="CLPAB_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50151">
        <property type="entry name" value="UVR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0143">Chaperone</keyword>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 5" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Clp R" evidence="8">
        <location>
            <begin position="2"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="domain" description="UVR" evidence="7">
        <location>
            <begin position="422"/>
            <end position="457"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="418"/>
            <end position="471"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18521.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="826" mass="93119" checksum="D5F06BD3D8687024" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU92</accession>
    <name>A0A0M2UU92_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative metallophosphoesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01682</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000175">
        <property type="protein sequence ID" value="KKO19608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19608">
        <property type="protein sequence ID" value="KKO19608"/>
        <property type="gene ID" value="BROFUL_01682"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004843">
        <property type="entry name" value="Calcineurin-like_PHP_ApaH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00149">
        <property type="entry name" value="Metallophos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metallophos" evidence="1">
        <location>
            <begin position="1"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="219" mass="24296" checksum="B5388F32CA0C0FAA" modified="2015-11-11" version="1">MKIISFGDIHEDIRNLSMMRSELETAELIVLSGDLTNCHGKAETKRVLDAIKKYNKHLLAQYGNMDMQETDSYLSQEGINLHGNGYLLGDVGIFGCGGSSATPFHTPSEISEAEIERFLTDGFNKVKDARWKIMVCHTPPKDTTTDIIQNGMHVGSQTVRDFILKFKPHVCISGHIHESRNKDKVGDTIVLNAGMFRDGWYIEVVIDKGALSAALKSIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUA1</accession>
    <name>A0A0M2UUA1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02116</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000212">
        <property type="protein sequence ID" value="KKO19175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19175">
        <property type="protein sequence ID" value="KKO19175"/>
        <property type="gene ID" value="BROFUL_02116"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644016" evidence="2">
        <location>
            <begin position="22"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="111"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="139" mass="15027" checksum="9E52661A197F880D" modified="2015-11-11" version="1">MKRILFCSFMMLLMLTSEVYAHGLYLSAEGGRLHANFSDHSPASGAVVIVVDDDGIELVRDTLDEKGIWTLPGNIAGVPKVIIVEAPGGHLARITWQEAFRGTTRGFFDSLGVRIATGTASLIGGGFLLKRLLIRKSNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUF1</accession>
    <name>A0A0M2UUF1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01615</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19683">
        <property type="protein sequence ID" value="KKO19683"/>
        <property type="gene ID" value="BROFUL_01615"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="103" mass="12247" checksum="293A0870C826D83F" modified="2015-11-11" version="1">MIIVKSKNNVPLRLTKERWNHIILRHPEMDVQKEHVLETVTIPDLIQEGDFGEFLAVKFYEKTPLTSKYLVVIYKEVIDTDGFIITAYYATKPSERRKILWKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUF8</accession>
    <name>A0A0M2UUF8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02045</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19245">
        <property type="protein sequence ID" value="KKO19245"/>
        <property type="gene ID" value="BROFUL_02045"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2548"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="83" mass="9117" checksum="137AE42C537ED9AC" modified="2015-11-11" version="1">MKNPSKSVVCLFLPWVCKGFAAYLSVFFLVCSGCDRQEDVAEQFEEFREIVATPVETQLSETPLGTATVAAQETTPVQTAQQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUI0</accession>
    <name>A0A0M2UUI0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pyruvate:ferredoxin-oxoacid:ferredoxin oxidoreductase beta subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03178</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18129">
        <property type="protein sequence ID" value="KKO18129"/>
        <property type="gene ID" value="BROFUL_03178"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3920"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011766">
        <property type="entry name" value="TPP_enzyme-bd_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02775">
        <property type="entry name" value="TPP_enzyme_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TPP_enzyme_C" evidence="1">
        <location>
            <begin position="50"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="247" mass="27003" checksum="8E8F9EECBF38A6D1" modified="2015-11-11" version="1">MKALYEKPKTFIDTPTHFCPGCGHGIVLRLIAEIIDAWGIRGKTIGLAPVGCSVLAYNYLDIDMCEAAHGRPPAVATGIKRVHPDHVVFAYQGDGDLAAIGTAEIIHAANRGENITFIFVNNAVYGMTNGQMAPTTLPGQKTATTQSGRNPLSEGHPIRVCELLAVLGGSSYLERVSLSSPENVRKAKKALEKGFKTQMEKRGFSLIEILSPCPIYWRMDANEAMRHIDEEMSKAFPLGVIKDWDHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUK9</accession>
    <name>A0A0M2UUK9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02627</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18676">
        <property type="protein sequence ID" value="KKO18676"/>
        <property type="gene ID" value="BROFUL_02627"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3259"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031009">
        <property type="entry name" value="Tcm_partner"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04474">
        <property type="entry name" value="tcm_partner"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="384" mass="45134" checksum="2B14004442D186A3" modified="2015-11-11" version="1">MVNNSFFEEQKEQSLVKSIIVAKYFDVWANVIINTQKKYPQYPQKIAYIDLFAGPGRYKDGTQSTPIKILTSAIAKPDLRDRLVAIFNDKDENNSKTLRAAINNIPGIETLRYQPEVYNEEVGDEIVKMFENMNLMPTLFFVDPWGYKGLSLGLVNSVLKDWGCDAIFFFNYNRINMGIDNEDVRQHMNELFGEERAEELRKKIRNKNPEERELFIVEELCQALKAYGSRYVLPFRFKNDRGKRTSHHLIFVSKHFRGYEIMKDIMARESTSNMQDVPSFEYNPADLLPKQMLLFMLFRPLDDLRDSLLQTFKGQRLRMQKIYEQHNVDTPYIKKNYKDILRQLYDEDIIQAVSSKGKPPKKDTFGDDILVTFPKRIKQWQAVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUM0</accession>
    <name>A0A0M2UUM0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03132</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000287">
        <property type="protein sequence ID" value="KKO18179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18179">
        <property type="protein sequence ID" value="KKO18179"/>
        <property type="gene ID" value="BROFUL_03132"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3864"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1660.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009923">
        <property type="entry name" value="Dodecin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025543">
        <property type="entry name" value="Dodecin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036694">
        <property type="entry name" value="Dodecin-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39324">
        <property type="entry name" value="PTHR39324"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07311">
        <property type="entry name" value="Dodecin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89807">
        <property type="entry name" value="SSF89807"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="71" mass="8205" checksum="40DD1F91325F1C93" modified="2015-11-11" version="1">MDDHIYKVIELVGTSTTTMEEAIQHALSRASETLRNMRWFQVVETRGRIENGKIARWEVILKVGFALEDTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUU7</accession>
    <name>A0A0M2UUU7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">50S ribosomal protein L4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01922</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL4 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19395.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19395">
        <property type="protein sequence ID" value="KKO19395"/>
        <property type="gene ID" value="BROFUL_01922"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1370.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002136">
        <property type="entry name" value="Ribosomal_L4/L1e"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023574">
        <property type="entry name" value="Ribosomal_L4_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00573">
        <property type="entry name" value="Ribosomal_L4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52166">
        <property type="entry name" value="SSF52166"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19395.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="72" mass="8273" checksum="E08EC09369D87FF4" modified="2015-11-11" version="1">MALRARDNELIVVDTIQFDIPKTKQMMDTLRVLGLYGESCLIVIPQKDENVWKSSAEYSVRESYDEFGAECL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV36</accession>
    <name>A0A0M2UV36_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01599</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19667.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19667">
        <property type="protein sequence ID" value="KKO19667"/>
        <property type="gene ID" value="BROFUL_01599"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19667.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="123" mass="14377" checksum="359D8ED680D19A6C" modified="2015-11-11" version="1">MRLPMSIEENLFTHKTDGYSGKIRFQVSPRVACRYARDLFRRTASDEISTRTAGLWTKVNDIIGRFNDVEIMFHDNEGMARLDQSLKTFQQFLNVVHMQSDSRLIEDKKHGIRIFLRQIGSNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV57</accession>
    <name>A0A0M2UV57_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02422</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000231">
        <property type="protein sequence ID" value="KKO18876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18876">
        <property type="protein sequence ID" value="KKO18876"/>
        <property type="gene ID" value="BROFUL_02422"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="64"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="98"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="132"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="166"/>
            <end position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="244" mass="27060" checksum="0AC0FD70F75E08FE" modified="2015-11-11" version="1">MGIKGKNVPLLAVAGIVVGLSISGCGKKDATETGEVMHKEAISEEGADTNEVRREVVLPEKMTATEYYNYGLESIKKGGFDEAIAAWQKVLELDPTMMSAYEKLGKAYYTQGRFDKAGEIYRKQLELKPDDPMIYYSLGVVYRMNEQFEDAVKMQKKALELNPNLATAYNELGLTYGKQKKLDEAIAAHKTALELDPKLGTAHNYLGVVYLLKGMSAEAEEQFNEFKKYEASKNMPSAHGASPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV81</accession>
    <name>A0A0M2UV81_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01570</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000164">
        <property type="protein sequence ID" value="KKO19722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19722">
        <property type="protein sequence ID" value="KKO19722"/>
        <property type="gene ID" value="BROFUL_01570"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1933"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025666">
        <property type="entry name" value="PQQ-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018391">
        <property type="entry name" value="PQQ_beta_propeller_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002372">
        <property type="entry name" value="PQQ_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011047">
        <property type="entry name" value="Quinoprotein_ADH-like_supfam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13360">
        <property type="entry name" value="PQQ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13570">
        <property type="entry name" value="PQQ_3"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00564">
        <property type="entry name" value="PQQ"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50998">
        <property type="entry name" value="SSF50998"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PQQ_3" evidence="1">
        <location>
            <begin position="57"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="domain" description="PQQ_3" evidence="1">
        <location>
            <begin position="258"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="domain" description="PQQ_3" evidence="1">
        <location>
            <begin position="299"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="domain" description="PQQ_3" evidence="1">
        <location>
            <begin position="338"/>
            <end position="375"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13570"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="388" mass="41691" checksum="68385E63EAF6C11E" modified="2015-11-11" version="1">MQRINKTCLILTIFSIVSILSQCNRIQAENDKTPWQMFRGDIRHTGQSAYRGAQTNTVKWSYKIDTRITSSPVVASDGTIYFGSVDGRLYAIHPDGTTKWAFQAGSEITASPALGDDGTIYIGSRDKKMYAITPDGKPKWTYTAGDIILSSATVTPDALYFGSNDNTLYVLTADGKLKWKYTAKSNITAAPALGTDGTVYLFEISGALHALSPDGVEKWTKRVGTGVYDSYSSPSIGADGTVYVGTDSGRLVAVKPDGNVKWYVNTGKAVHCSPAIATDGTIVFGSYSGMVYAVTPDCKLKWSFKTNGWVESSPVIDAEGTVYLGSSDGRLYAINAGGTLKWSYQTKGEIESSPSIGPDGTVYIGSNDCHLYAIGDTSQTTSVPVFEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV88</accession>
    <name>A0A0M2UV88_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01796</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000187">
        <property type="protein sequence ID" value="KKO19500.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19500">
        <property type="protein sequence ID" value="KKO19500"/>
        <property type="gene ID" value="BROFUL_01796"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2231"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19500.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="385" mass="42969" checksum="D020EA4D5F914D65" modified="2015-11-11" version="1">MAAWQTTHQSGTRVLITRGIRMLHKGWYSSAWCLLLTASLTGCTSIGPRSLSRDRFDYTTAISDSWKDQMLLNIVKIRYADAPVFLDVNSIISQYALDSAITLNSSWSSPKEGFGGGNIFGIGGIGRYFDRPTITFSPMTGEKFAQKLMNPIPPPALLSLIQTGFPIDIVFRLCIHAINGVQNRFGAGARARPADPEFYPLLERMRRVQIAGIMGMRMKKLDKEEASLELFFREKVDPAMEADILATRKVIGLDPHTNEFRVFYGSFSTSDKEVAILTRSVLEVIVDLASYIEVPEVHVAEQRVNPTLKDQQGASAPPIPLIRIHSSQEKPLDAFIAIPYRGYWFWIDDKDLPSKRLFSSLMFVFTLTETESKEGAPIVTIPVGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVE0</accession>
    <name>A0A0M2UVE0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 12">Delta-aminolevulinic acid dehydratase</fullName>
            <ecNumber evidence="4 12">4.2.1.24</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">BROFUL_01751</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 12">
            <text>2 5-aminolevulinate = H(+) + 2 H2O + porphobilinogen</text>
            <dbReference type="Rhea" id="RHEA:24064"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58126"/>
            <dbReference type="ChEBI" id="CHEBI:356416"/>
            <dbReference type="EC" id="4.2.1.24"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; coproporphyrinogen-III from 5-aminolevulinate: step 1/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="12">Homooctamer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 13">Belongs to the ALAD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.24" evidence="4 12"/>
    <dbReference type="EMBL" id="LAQJ01000181">
        <property type="protein sequence ID" value="KKO19550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19550">
        <property type="protein sequence ID" value="KKO19550"/>
        <property type="gene ID" value="BROFUL_01751"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2169"/>
    <dbReference type="UniPathway" id="UPA00251">
        <property type="reaction ID" value="UER00318"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004655">
        <property type="term" value="F:porphobilinogen synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006782">
        <property type="term" value="P:protoporphyrinogen IX biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001731">
        <property type="entry name" value="ALAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030656">
        <property type="entry name" value="ALAD_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11458">
        <property type="entry name" value="PTHR11458"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00490">
        <property type="entry name" value="ALAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001415">
        <property type="entry name" value="Porphbilin_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00144">
        <property type="entry name" value="DALDHYDRTASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01004">
        <property type="entry name" value="ALAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00169">
        <property type="entry name" value="D_ALA_DEHYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0350">Heme biosynthesis</keyword>
    <keyword evidence="7 12" id="KW-0456">Lyase</keyword>
    <keyword evidence="11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 12" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0862">Zinc</keyword>
    <feature type="active site" description="Schiff-base intermediate with substrate" evidence="9">
        <location>
            <position position="201"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with substrate" evidence="9">
        <location>
            <position position="254"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="120"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="122"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="130"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="239"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012053"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00020771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR001415-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR001415-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR001415-5"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU000515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU004161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KKO19550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="330" mass="36742" checksum="8BB3E5E796987D89" modified="2015-11-11" version="1">MGFPKQRLRRLRQNENIRRLVRETHLTVDDLIMPLFVRPGKGIKQPIPSMPGNYQMSVDKLVEEVKILEGLGIPGIILFGIPDKKDEMGSDAYSDEGIIQQAIIAIKKTAKNILVITDVCMCEYTDHGHCGFVRRDERSGHFDVDNDMTLELLVKEAVSHAKAGADIIAPSDMMDGRVAAIRDGLDENSFEQIPIMAYSAKYASGFYGPFREAAESTPGFGDRTSYQMDPHNATEALREVSLDIDEGADIVMVKPALAYLDIIRIIKDNFDYPVAAYNVSGEFSVVKAAAEKGWIDEKRVALEILTGIKRAGADMILTYWAKDAAQWLKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVE4</accession>
    <name>A0A0M2UVE4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01300</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20028.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20028">
        <property type="protein sequence ID" value="KKO20028"/>
        <property type="gene ID" value="BROFUL_01300"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009740">
        <property type="term" value="P:gibberellic acid mediated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006597">
        <property type="entry name" value="Sel1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001440">
        <property type="entry name" value="TPR_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00515">
        <property type="entry name" value="TPR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00671">
        <property type="entry name" value="SEL1"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="6"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0939">Gibberellin signaling pathway</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0802">TPR repeat</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="repeat" description="TPR" evidence="5">
        <location>
            <begin position="27"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="5">
        <location>
            <begin position="61"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="5">
        <location>
            <begin position="95"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="5">
        <location>
            <begin position="129"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="5">
        <location>
            <begin position="163"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="5">
        <location>
            <begin position="197"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00019143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20028.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="265" mass="30039" checksum="5E0516E35143C17C" modified="2015-11-11" version="1">MHYAQYGLFDEAIEMYQKALAKNPRYPDVYNKLGIAYTQKGLFDKAIEAFQKAIEQKPSDVEAYYNLGSAYFDRGSFDNAITAFQKTIQLNPEYRSAYSLLGIAYTKVGKYDEAIQMLKKRIDFDPGLAIAHSNLGIVFSMKGMDQEALAEYNKALEIDPGHETALYNIGLLYDKAGNTDKAIHYYNRTVELNVSNADAQCRLGKNYMKNKQYDEAIDAFQTAAMANPDNVEIYNDLGNAHKAKGMEKEAEGYFSLYKKKSKKMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVH0</accession>
    <name>A0A0M2UVH0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">DNA polymerase III delta' subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01470</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000150">
        <property type="protein sequence ID" value="KKO19827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19827">
        <property type="protein sequence ID" value="KKO19827"/>
        <property type="gene ID" value="BROFUL_01470"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008408">
        <property type="term" value="F:3'-5' exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004622">
        <property type="entry name" value="DNA_pol_HolB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00678">
        <property type="entry name" value="holB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0235">DNA replication</keyword>
    <keyword evidence="3" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19827.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="347" mass="40270" checksum="10934F81EE3B03EE" modified="2015-11-11" version="1">MSFKNILCQERVINLFQKAIVHNHLAHAYIFAGQEGIGKTLFSKELAKAIFCQHPGADACDTCNHCQRIDHDQFPDLFFVLPEKNSRTIKIEQIRELQEVVHINPLESKYKIAVIQSADKMNEESSNCLLKTLEEPPSYALLILIVTSLEPVRETIRSRCQIVRFSPLSVSAVKRILIDRFQMDAKQAERLAYLSNGSIERAALLSNTRALENKNWLVDRILTLEMNDNLSFAKELFEEWHIQDLEVLEEKRLQVKELILSFLLYYRDLLVCKTGERDISLHYSDWQEALRSKSKSFSEDVLFHIIQVIRTSLEHLDRNANITLLLENMITKILHLQSGRRTTQSFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVI0</accession>
    <name>A0A0M2UVI0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01439</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000147">
        <property type="protein sequence ID" value="KKO19837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19837">
        <property type="protein sequence ID" value="KKO19837"/>
        <property type="gene ID" value="BROFUL_01439"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="63"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="168"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="122"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="172"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="188" mass="20132" checksum="20201DFE7798CEE0" modified="2015-11-11" version="1">MNAKDAHPLSDLRWHRLSATVMNIRSLPAMSAHPFSVFQAIMKGVSLLPVSPSAAALLPNKESPAASACPRPAPAPLMGNESPELTGDLSPVPGEERTGGAEGDAEPLPRETSPAGETQHGETDGESPRGKKGEEAREPLIIFHARGRRHSLKMREYEKVSLDIFFSEKGMGTSGNGGTPFRRTCPTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVI7</accession>
    <name>A0A0M2UVI7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alcohol dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01449</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000147">
        <property type="protein sequence ID" value="KKO19847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19847">
        <property type="protein sequence ID" value="KKO19847"/>
        <property type="gene ID" value="BROFUL_01449"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1786"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKS_ER" evidence="1">
        <location>
            <begin position="10"/>
            <end position="340"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="342" mass="37542" checksum="BA91DBE5608421A3" modified="2015-11-11" version="1">MKAMVFYEHGGIEKLTYADMEKPKISPYEVLVKVKACALNHLDIWVRQGLPGVEVPMPHILGSDSAGEVAEVGMEVKTFRPGDPVIIAPGVRCRKCVPCITNGDSMCNSFKIMGFQVQGGYAEFVKAHVDNIIPVSRKRSFEEWAAVPLVFITAWHMLITRGQLKAGEHVLIHAAGSGIGSAAIQIARLAGARVITTARGKEKLEKAKQLGADEVIDYSKENYADRVKDITGNKGVDLIFEHIGPDTWEKNLQCLTKGGRMVVCGATSGPQATVELRFLFMKQHAIIGCYMGSKKELLDVLSLVELGRLRPVIDSTFPLQEAAAAQQRMLNRENFGKIILKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVJ4</accession>
    <name>A0A0M2UVJ4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02300</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO19006.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19006">
        <property type="protein sequence ID" value="KKO19006"/>
        <property type="gene ID" value="BROFUL_02300"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023885">
        <property type="entry name" value="4Fe4S-binding_SPASM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13186">
        <property type="entry name" value="SPASM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="5">
        <location>
            <begin position="3"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="domain" description="SPASM" evidence="6">
        <location>
            <begin position="221"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF13186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19006.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="312" mass="35761" checksum="CAB98B2CCE626566" modified="2015-11-11" version="1">MPLEMARSILDDIGRTGIAKLVLFHVMGEPALHPHFIDIVRYANHKNVAVCITTNGSRIEKNDLLNTLIQANAKQVILSLQTPDENTFSMRGARGVSFEDYAEYVTSIARTFMNNGHESELVIHFLSSPLRKLMIPIAKELSIADTSKKLRSHLQAWAERILKGTSNEHRLSNVQRQITRARSFKENKIFINDRLSFQTRIVGDWATHFDTKVVNARVGYCPGIQDNFGILWNGDYTFCCTDYDGRTSTHNYSDTSIQDYLSNEVVQKVVRGFRRFRVLHPYCKQCLGDKNMLNSLVKQVGSIVYFKWIKKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVL3</accession>
    <name>A0A0M2UVL3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Helicase subunit of dna repair complex</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">snf2_2</name>
        <name evidence="2" type="ORF">BROFUL_02756</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000258">
        <property type="protein sequence ID" value="KKO18549.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18549">
        <property type="protein sequence ID" value="KKO18549"/>
        <property type="gene ID" value="BROFUL_02756"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140658">
        <property type="term" value="F:ATP-dependent chromatin remodeler activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10810">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038718">
        <property type="entry name" value="SNF2-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000330">
        <property type="entry name" value="SNF2_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00176">
        <property type="entry name" value="SNF2-rel_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SNF2-rel_dom" evidence="1">
        <location>
            <begin position="77"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18549.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="174" mass="19741" checksum="92056C80A0F07C07" modified="2015-11-11" version="1">MKRKRQFFMLVHLEELHLPASNSKVTLFHQKILAHELTLKRPAHELRKLNQTLASSTVDLNPRQIDAALFAFNCPLSRGAILCDEVGLGKTIEVGLIISQLWAEGKRKIIIVVPASLRKQWQNELFEKFNIPGVIVDGSEYKTSKKDALNPFDRDNLAVIVSTPFAFPKRIKSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVL7</accession>
    <name>A0A0M2UVL7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02742</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000256">
        <property type="protein sequence ID" value="KKO18554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18554">
        <property type="protein sequence ID" value="KKO18554"/>
        <property type="gene ID" value="BROFUL_02742"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010980">
        <property type="entry name" value="Cyt_c/b562"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47175">
        <property type="entry name" value="SSF47175"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644047" evidence="2">
        <location>
            <begin position="24"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="152"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="156"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="176" mass="19914" checksum="0669B2D87F598FE6" modified="2015-11-11" version="1">MTRNSIFAGLVAVICLVAAHSFAEEKPKGEKEKSELAKIMGEIDKSYKAVEQISGYYKYSDNDWSVIAEASANIVQLAKVVISKFPRPDDKKYQDLNKLMLTEAEKMLEVTSHKNERGALEDAQWQVRRLRQTCAVCHKHLGIHLYPQLYPGKKDELQPGQEEIPAPKETGAPKDW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVM9</accession>
    <name>A0A0M2UVM9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Cytokinin riboside 5'-monophosphate phosphoribohydrolase</fullName>
            <ecNumber evidence="1">3.2.2.n1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01173</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LOG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.2.n1" evidence="1"/>
    <dbReference type="EMBL" id="LAQJ01000126">
        <property type="protein sequence ID" value="KKO20098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20098">
        <property type="protein sequence ID" value="KKO20098"/>
        <property type="gene ID" value="BROFUL_01173"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1452"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009691">
        <property type="term" value="P:cytokinin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005269">
        <property type="entry name" value="LOG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031100">
        <property type="entry name" value="LOG_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03641">
        <property type="entry name" value="Lysine_decarbox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00730">
        <property type="entry name" value="TIGR00730"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0203">Cytokinin biosynthesis</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="200" mass="22199" checksum="28A5769216B68F6F" modified="2015-11-11" version="1">MGDTPSIKRICVFCGSRRGARPEYTATARQLGKVMVSQGIGLVYGGGSIGLMREIADAVLREKGEVIGVIPHALVSKEFAHAGLTELRVVSSMHERKAMMAELSDAFIAMPGGFGTFDELFEILTWAQLGLHTKPIGLLNTDGYFDLLLAFIQHVLKERFIQTKHRRLIMTSHDPEKLLAEIIRCTPPAKIPRLIDWKET</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVP7</accession>
    <name>A0A0M2UVP7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02717</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000252">
        <property type="protein sequence ID" value="KKO18584.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18584">
        <property type="protein sequence ID" value="KKO18584"/>
        <property type="gene ID" value="BROFUL_02717"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18584.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="402" mass="46465" checksum="0606C78EF7228ECD" modified="2015-11-11" version="1">MYLSEKDIQRLKSFRPGIRTNKVLYYLLETKVLGYWSFLEPKHKGIELADILVWWEDVVLLLEAKTREKPEKASEAWIRTQLNEAVVQVNEKAKMLRNGGVAELRNKWRGVVKWDPGVVKHYYSIIVLNCFSDSCDPREIATEAFKASDIPIQVFSLFDLAELLRFINTIWDFIIYYELREMYSRRYKVSLHEEFQTYQGILSCWEELSPKDAQQEQDFQVAISNAILRSKLADEKGYSLLAASYLLDLAIGSLERRADSDKTGKIVGSPKHEQFVSSIGAIAELSRHRRSGYGKKWVEAAKQSAENGKSCYKFCYSPSRRRSYILCSFETKEYSRDIIMIKLTQEHMKEYKTTSCLCLAATTNTILSTYEMFLSWTKGKGSSEPPDIEILDTLVLFTEKSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVU0</accession>
    <name>A0A0M2UVU0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Nitrite reductase (cytochrome; ammonia-forming)</fullName>
            <ecNumber evidence="2">1.7.2.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">nrfA</name>
        <name evidence="9" type="ORF">BROFUL_01310</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>6 Fe(III)-[cytochrome c] + 2 H2O + NH4(+) = 6 Fe(II)-[cytochrome c] + 8 H(+) + nitrite</text>
            <dbReference type="Rhea" id="RHEA:13089"/>
            <dbReference type="Rhea" id="RHEA-COMP:10350"/>
            <dbReference type="Rhea" id="RHEA-COMP:14399"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16301"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
            <dbReference type="ChEBI" id="CHEBI:29034"/>
            <dbReference type="EC" id="1.7.2.2"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the cytochrome c-552 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.7.2.2" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000138">
        <property type="protein sequence ID" value="KKO19962.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19962">
        <property type="protein sequence ID" value="KKO19962"/>
        <property type="gene ID" value="BROFUL_01310"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1618"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042279">
        <property type="term" value="F:nitrite reductase (cytochrome, ammonia-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00548">
        <property type="entry name" value="NrfA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003321">
        <property type="entry name" value="Cyt_c552"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036280">
        <property type="entry name" value="Multihaem_cyt_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30633">
        <property type="entry name" value="PTHR30633"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02335">
        <property type="entry name" value="Cytochrom_C552"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000243">
        <property type="entry name" value="Cyt_c552"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48695">
        <property type="entry name" value="SSF48695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0106">Calcium</keyword>
    <keyword evidence="7" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00029373"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19962.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="446" mass="50985" checksum="96153A8CA2ADDC6B" modified="2015-11-11" version="1">MQRKEEAKQHVFRVVELTEDTIDPVIWGKNYPRQYDGYRRTVDTERTRHGGSEAFNRLEEYPRWREIFLGYAFGVDYREDRGHAYMLSDQDITERIKIIKQTGACLHCHASILTAYRETGLKAGIPADEAHRQEQIIKGFEIVCAMPYSEARTLVSHPVSCVDCHDPDTLQLRVTRPAFLKALQALASSDSPLPHLPSIERWRKDGRKGEYDVNTMATRQEMRSFACGQCHVEYYFKGDGKLVTYPWHNGMRVDQIEAYYDETGFKDWTHKTSGAPMLKAQHPEFEMWSQGIHARSGVSCADCHMPFKREGAIKISDHHVRSPLLNISNACQTCHHIPESELKARITLIQDNTRDLMSRTEVAVVDLIHALQRAQELGIPAESLKTAQSLHRKAQWRLDFVAAENSMGFHAPQEAARILGEAIDYARQGQLETLRLQALATTKDKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVV0</accession>
    <name>A0A0M2UVV0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Cytidylate kinase</fullName>
            <shortName evidence="8">CK</shortName>
            <ecNumber evidence="8">2.7.4.25</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Cytidine monophosphate kinase</fullName>
            <shortName evidence="8">CMP kinase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">cmk</name>
        <name evidence="10" type="ORF">BROFUL_01036</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>ATP + CMP = ADP + CDP</text>
            <dbReference type="Rhea" id="RHEA:11600"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58069"/>
            <dbReference type="ChEBI" id="CHEBI:60377"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.25"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 8">
            <text>ATP + dCMP = ADP + dCDP</text>
            <dbReference type="Rhea" id="RHEA:25094"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57566"/>
            <dbReference type="ChEBI" id="CHEBI:58593"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.25"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the cytidylate kinase family. Type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.25" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20188.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20188">
        <property type="protein sequence ID" value="KKO20188"/>
        <property type="gene ID" value="BROFUL_01036"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1298"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036430">
        <property type="term" value="F:CMP kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036431">
        <property type="term" value="F:dCMP kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006220">
        <property type="term" value="P:pyrimidine nucleotide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02020">
        <property type="entry name" value="CMPK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00238">
        <property type="entry name" value="Cytidyl_kinase_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003136">
        <property type="entry name" value="Cytidylate_kin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011994">
        <property type="entry name" value="Cytidylate_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02224">
        <property type="entry name" value="Cytidylate_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00017">
        <property type="entry name" value="cmk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="5 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Cytidylate_kin" evidence="9">
        <location>
            <begin position="3"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="7"/>
            <end position="15"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009427"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00238"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO20188.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="227" mass="25659" checksum="E816A3682B10F47F" modified="2015-11-11" version="1">MIIAIDGPAGSGKSTIARMLARRLGFNYLDTGAMYRALTWKALQDGADLTDANALCQLMDQTAIEFRGKNDGMQIWVDGVNVTEKIRAPSVTNNVHYISNASSVRHRMVKLQQMFASGGNVIAEGRDMGTVVFPHADKKFFLDAEIEERARRRHDEMRLPDGEISYADVMKDIEIRDKRDTTRDNSPLRKSDDAIYLNTTKMSIEEVVARIFEELEPVVKKLDVYKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVZ0</accession>
    <name>A0A0M2UVZ0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02174</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000214">
        <property type="protein sequence ID" value="KKO19131.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19131">
        <property type="protein sequence ID" value="KKO19131"/>
        <property type="gene ID" value="BROFUL_02174"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19131.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="203" mass="23680" checksum="59625F2A75525367" modified="2015-11-11" version="1">MSTILKEDVLHGKSKEISAKEKVDRIMSTIVESSGTLSPLKTEAMKNNISSESMKPGENDASQYIFSREILLEGEKSSDLDELRNKLVNELKPSNAIELLIVDRIISSIWRLKRCLKIESQIIEYNTSCIQEYEQGFLRTRKRTNKELSQLKAMKMMENKNGSMELSKYETMLEMQVYKALKELDKYRRRELRYEKKSLKGLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVZ2</accession>
    <name>A0A0M2UVZ2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01289</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20017">
        <property type="protein sequence ID" value="KKO20017"/>
        <property type="gene ID" value="BROFUL_01289"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="296"/>
            <end position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="496" mass="57180" checksum="7C7CD62D2D923288" modified="2015-11-11" version="1">MYDLTNFTIQDMTQCGDALEHLGYKARNLEELTNSLVRYFYDHLIDKRTGEKSAALVRFFMTYPYESLDDPLRQLAGKMAGNQPLTKTTSCLVLMATAGVQPEWNTRELSRWHRVIPLVDKQTADKHPMIAQLVYQLGIDINDVLNPHPTPEIELESKIFNVFHVPDAVGSPHIPAQDTFVIPFGIKSALGFGSMLPTGNLFTVVIFSKMRVPGNTAEMFKYLALNMRMAVLPFVSKKIYVNEKTVLEETERLKSIIATQTSLLSVYKKTAVNQSRRLEGFSWKFTLSLAKFTKKAWLYLSLSTASSLFLYVFYATHIEFLLHVAAIPLEVLLGALLIEKLLERKEKAEKFNQLMYIKSYLYRSEMRNLFITNFNSLKFPVITMPKIKNAGLDELKQLRSEADHLEYFSLDAMELVIREYVAAYSVFRDFMDRASTYGMDTLFQDMIYILHFIQDVKLFQQANPDKPFIYEAQEHPFLMEKTKKVLGDGTRNFWII</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVZ3</accession>
    <name>A0A0M2UVZ3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02620</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18669.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18669">
        <property type="protein sequence ID" value="KKO18669"/>
        <property type="gene ID" value="BROFUL_02620"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18669.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="197" mass="22321" checksum="DAF5B1CF0DEC0CFA" modified="2015-11-11" version="1">MKKIGFVVFVVVMIFTRLSLAQDSPRVIVERYLDAVRNNDYDKAYSFISKTDTTIINWLKLIQYVKKIAPVRLAEVIDLAHHAVRQEIASVVVGGNTCLVKIHSRIPDMEEGLRITRNPEEIKSLLDRGRLPAKERFGECTLIKEDGMWKISKVKGVSSDQAADIAADFATLILGKDEAERMKKKIDDFMQQQEKGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVZ7</accession>
    <name>A0A0M2UVZ7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01294</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20022">
        <property type="protein sequence ID" value="KKO20022"/>
        <property type="gene ID" value="BROFUL_01294"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="46" mass="5299" checksum="4B0E7DDB3FE458DB" modified="2015-11-11" version="1">MVNFWMDKDGSKSLKFPGERMHTKPNCASTVKNDSEAEGVFNQWHI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW17</accession>
    <name>A0A0M2UW17_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01024</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000120">
        <property type="protein sequence ID" value="KKO20258.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20258">
        <property type="protein sequence ID" value="KKO20258"/>
        <property type="gene ID" value="BROFUL_01024"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1285"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="31"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="80"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="134"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20258.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="165" mass="17218" checksum="36F07E9976F40C84" modified="2015-11-11" version="1" fragment="single">MKKGFWGVGLVSLTIFLSSCVATQTQVKETKAPEIKGEPLKEVKRPEGIPIPTPVPTVTPEAQVTRPEIPQVSAPTVPEAPAVPEAPKTPEAPSMPEVPAVPEAPEAPSMPEVPAVPEAPSMPEAQAVPELPEAPEAPAKPEVPEVPEVPEVPSMPEAPAVPELP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWB1</accession>
    <name>A0A0M2UWB1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">zf-HC2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02455</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18794">
        <property type="protein sequence ID" value="KKO18794"/>
        <property type="gene ID" value="BROFUL_02455"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1320">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041916">
        <property type="entry name" value="Anti_sigma_zinc_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027383">
        <property type="entry name" value="Znf_put"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13490">
        <property type="entry name" value="zf-HC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="zf-HC2" evidence="1">
        <location>
            <begin position="6"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="289" mass="33521" checksum="EDDD7F628BF73908" modified="2015-11-11" version="1">MCERSEQYQEMMFAYIEGMLEPEEKKIFELHLQGCNSCREELQKTKKLVDMLKEIRFRPNMVTEDCKNYDVVGYAFDELTPEERETTAMHIAKCDHCLFEVIDLKAIKKNDVDVDNSQAQTPDAIKANLYGNWINHNIIEFISDSVDLKLPLAAGPAGFKKTRKVGNRYMISISPKNGEISLMKEDACHSVLKPVRDIINGHYFYYKIFGLVKDLKQCELLSGKERFLPITIKLPTRDLSALYIFISQREDVIQQITLDWMLNVAKGTLQQPINEVIYIYAKICWEVMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWH5</accession>
    <name>A0A0M2UWH5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">envZ</name>
        <name evidence="9" type="ORF">BROFUL_00843</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000105">
        <property type="protein sequence ID" value="KKO20418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20418">
        <property type="protein sequence ID" value="KKO20418"/>
        <property type="gene ID" value="BROFUL_00843"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="158"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="8">
        <location>
            <begin position="186"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="7">
        <location>
            <begin position="247"/>
            <end position="463"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="470" mass="52970" checksum="BA9B5513CAA4074E" modified="2015-11-11" version="1">MISWTIRTKLSLWYTSIFGGMLFLFSLLTYVAFSHANNKRIDVGLTEEAVGIAHHAQINMNSFKEYVSQISNERDEEWAAGKYIAILGPAGNLQFRSGNLTDAHLPLQRHQIKEIFSGKIYFKTVKNSKGRLLRIITIPIKDTRQLIQIGIVINKDTALNIFLLILTALGFLAIVGSWLGGRFMAKKALRPIDCMIKDLQKIETEHLGKRLVIHPVKDEISELSGVINEMLTRLENSFSQVRQFTTDASHELRTPIAIMKAGIEVALSSERDICSYQQILANTLEDLGRFSKIIESLFILAKADAGQYELQKKRMNLHPVVMDIAEQLKLIAEPKNIFVSMEKMEDAFIDGDELLIRMMLLNLIDNAVKYTQANGTIKLSLYKDNGCVKISIRDNGIGISQEDLPRIFDRFYRACKVRTANHTSSGLGLSICQWIVKSHHGTIIVNSELHKGSTFTVTLPTVSLSKITKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWJ8</accession>
    <name>A0A0M2UWJ8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">SpoIID domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01057</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20207">
        <property type="protein sequence ID" value="KKO20207"/>
        <property type="gene ID" value="BROFUL_01057"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030435">
        <property type="term" value="P:sporulation resulting in formation of a cellular spore"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013486">
        <property type="entry name" value="SpoIID/LytB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013693">
        <property type="entry name" value="SpoIID/LytB_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30032:SF4">
        <property type="entry name" value="PTHR30032:SF4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08486">
        <property type="entry name" value="SpoIID"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02669">
        <property type="entry name" value="SpoIID_LytB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SpoIID" evidence="1">
        <location>
            <begin position="136"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20207.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="296" mass="33256" checksum="63E8A03E9CA896E6" modified="2015-11-11" version="1">MGRAFFLMFISVLPIIAAGIPLSCHRESTVVQDGVHDYGPLMDTIPVVRVLLINDKREAQVAIHGCYQITGSLTDVIEQGQGLPKGTISISNGGIRIGNKHYNHSELRIVTQQDGRIELNNVRYRGEIRILQQPNNKFSVIEEIDLESFIAGVLGSEMPQAWNDEALRAQAVTARTYAMYKKKVNRDNIYHLDMLDLAYRGVANETSRLTKIVQDTKGIVMVYNWNIFPAYFHSTCGGHTEDVHHVFGKDSIPPLSGWYVIIVTTPNIPPGVRISANQPLKKNCRRPRYPFPAYVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWL3</accession>
    <name>A0A0M2UWL3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ribonuclease 3</fullName>
            <ecNumber evidence="6">3.1.26.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Ribonuclease III</fullName>
            <shortName evidence="6">RNase III</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rnc</name>
        <name evidence="10" type="ORF">BROFUL_00809</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>Endonucleolytic cleavage to 5'-phosphomonoester.</text>
            <dbReference type="EC" id="3.1.26.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ribonuclease III family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.26.3" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000103">
        <property type="protein sequence ID" value="KKO20453.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20453">
        <property type="protein sequence ID" value="KKO20453"/>
        <property type="gene ID" value="BROFUL_00809"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1025"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004525">
        <property type="term" value="F:ribonuclease III activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006397">
        <property type="term" value="P:mRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008033">
        <property type="term" value="P:tRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00593">
        <property type="entry name" value="RIBOc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1520.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00104">
        <property type="entry name" value="RNase_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014720">
        <property type="entry name" value="dsRBD_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011907">
        <property type="entry name" value="RNase_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000999">
        <property type="entry name" value="RNase_III_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036389">
        <property type="entry name" value="RNase_III_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11207">
        <property type="entry name" value="PTHR11207"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00035">
        <property type="entry name" value="dsrm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14622">
        <property type="entry name" value="Ribonucleas_3_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00358">
        <property type="entry name" value="DSRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00535">
        <property type="entry name" value="RIBOc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69065">
        <property type="entry name" value="SSF69065"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02191">
        <property type="entry name" value="RNaseIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50137">
        <property type="entry name" value="DS_RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00517">
        <property type="entry name" value="RNASE_3_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50142">
        <property type="entry name" value="RNASE_3_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 6" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 6" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="6" id="KW-0540">Nuclease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="6" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="6" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="6" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="RNase III" evidence="9">
        <location>
            <begin position="14"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="domain" description="DRBM" evidence="8">
        <location>
            <begin position="165"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="127"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="52"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="124"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="127"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010183"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50142"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO20453.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="255" mass="28864" checksum="0A5A7E3A608DEA58" modified="2015-11-11" version="1">MILQTNNHINPEKLSECQFKIGYLFNNPEVLEKALTHTSCKLENNFSNERLEFLGDAVLGMIISDYLYKALPHYSEGELTKIKSVVVSQTTLAKVSLEAQLKDFLTVGKGLNDRNFLPKSLLANVFEAVIAAIYLDGGLEAAYHFTIKHLKKEIDIVCKNQHEKNYKSILQQHSQKEHGITPVYRVLQQVGPDHGKLFEVSVLIKGTEYGRGWGKSKKEAEQIAAKETLKMLIPEIPHEMHEINNESCNLGKEFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWV5</accession>
    <name>A0A0M2UWV5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00959</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000116">
        <property type="protein sequence ID" value="KKO20327.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20327">
        <property type="protein sequence ID" value="KKO20327"/>
        <property type="gene ID" value="BROFUL_00959"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20327.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="122" mass="13795" checksum="8272D05D8FA0D186" modified="2015-11-11" version="1">MKSMAPKKHATNKLVLSSFFRIITIDGKTEQVTTRVRRTLFFDDEDSFPFSKIKNVEVAKDIKESIPNDCIRYLVLLNLANGDKILIDEIGESSPRGGMREMKNLGKKISAITGKTLKTFED</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWX3</accession>
    <name>A0A0M2UWX3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01209</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000130">
        <property type="protein sequence ID" value="KKO20070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20070">
        <property type="protein sequence ID" value="KKO20070"/>
        <property type="gene ID" value="BROFUL_01209"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="113" mass="12652" checksum="FBFE697E29570E06" modified="2015-11-11" version="1" fragment="single">FSPASPYFTGLWGVSVQTLYIAHWTHTPENCPGRSADGAKILSKFWEGRKLAEEKGITILGAYVTVTEHDYFIIFEAIDYGAAVEFFLPLVPSQTGKIVPVLTMDEWLKIMPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX01</accession>
    <name>A0A0M2UX01_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 8">DNA-directed RNA polymerase subunit beta</fullName>
            <shortName evidence="6">RNAP subunit beta</shortName>
            <ecNumber evidence="6 8">2.7.7.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">RNA polymerase subunit beta</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Transcriptase subunit beta</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rpoB</name>
        <name evidence="15" type="ORF">BROFUL_02267</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 8">DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5 6 8">
            <text>a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:21248"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.6"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="6 8">The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6 7">Belongs to the RNA polymerase beta chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.6" evidence="6 8"/>
    <dbReference type="EMBL" id="LAQJ01000224">
        <property type="protein sequence ID" value="KKO19024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19024">
        <property type="protein sequence ID" value="KKO19024"/>
        <property type="gene ID" value="BROFUL_02267"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2829"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed 5'-3' RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032549">
        <property type="term" value="F:ribonucleoside binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00653">
        <property type="entry name" value="RNA_pol_B_RPB2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.270.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01321">
        <property type="entry name" value="RNApol_bact_RpoB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042107">
        <property type="entry name" value="DNA-dir_RNA_pol_bsu_ext_1_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019462">
        <property type="entry name" value="DNA-dir_RNA_pol_bsu_external_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015712">
        <property type="entry name" value="DNA-dir_RNA_pol_su2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007120">
        <property type="entry name" value="DNA-dir_RNAP_su2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037033">
        <property type="entry name" value="DNA-dir_RNAP_su2_hyb_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010243">
        <property type="entry name" value="RNA_pol_bsu_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007121">
        <property type="entry name" value="RNA_pol_bsu_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007644">
        <property type="entry name" value="RNA_pol_bsu_protrusion"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007642">
        <property type="entry name" value="RNA_pol_Rpb2_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037034">
        <property type="entry name" value="RNA_pol_Rpb2_2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007645">
        <property type="entry name" value="RNA_pol_Rpb2_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007641">
        <property type="entry name" value="RNA_pol_Rpb2_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014724">
        <property type="entry name" value="RNA_pol_RPB2_OB-fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20856">
        <property type="entry name" value="PTHR20856"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04563">
        <property type="entry name" value="RNA_pol_Rpb2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04561">
        <property type="entry name" value="RNA_pol_Rpb2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04565">
        <property type="entry name" value="RNA_pol_Rpb2_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10385">
        <property type="entry name" value="RNA_pol_Rpb2_45"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00562">
        <property type="entry name" value="RNA_pol_Rpb2_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04560">
        <property type="entry name" value="RNA_pol_Rpb2_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02013">
        <property type="entry name" value="rpoB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01166">
        <property type="entry name" value="RNA_POL_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 6 8" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="3 6 8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6 8" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="RNA_pol_Rpb2_1" evidence="12">
        <location>
            <begin position="17"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="domain" description="RNA_pol_Rpb2_2" evidence="11">
        <location>
            <begin position="286"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="domain" description="RNA_pol_Rpb2_3" evidence="13">
        <location>
            <begin position="445"/>
            <end position="512"/>
        </location>
    </feature>
    <feature type="domain" description="RNA_pol_Rpb2_45" evidence="14">
        <location>
            <begin position="523"/>
            <end position="588"/>
        </location>
    </feature>
    <feature type="domain" description="RNA_pol_Rpb2_6" evidence="9">
        <location>
            <begin position="598"/>
            <end position="1145"/>
        </location>
    </feature>
    <feature type="domain" description="RNA_pol_Rpb2_7" evidence="10">
        <location>
            <begin position="1147"/>
            <end position="1222"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00024550"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU363031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF04560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF04561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF04563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF04565"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF10385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KKO19024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1231" mass="139017" checksum="290A7EB81A6EA33C" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX62</accession>
    <name>A0A0M2UX62_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Putative cell division protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">BROFUL_00818</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the FtsK/SpoIIIE/SftA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000103">
        <property type="protein sequence ID" value="KKO20462.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20462">
        <property type="protein sequence ID" value="KKO20462"/>
        <property type="gene ID" value="BROFUL_00818"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1034"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025199">
        <property type="entry name" value="FtsK_4TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041027">
        <property type="entry name" value="FtsK_alpha"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002543">
        <property type="entry name" value="FtsK_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018541">
        <property type="entry name" value="Ftsk_gamma"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13491">
        <property type="entry name" value="FtsK_4TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17854">
        <property type="entry name" value="FtsK_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09397">
        <property type="entry name" value="FtsK_gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01580">
        <property type="entry name" value="FtsK_SpoIIIE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00843">
        <property type="entry name" value="Ftsk_gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50901">
        <property type="entry name" value="FTSK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="12" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="12" id="KW-0132">Cell division</keyword>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="67"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="90"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="123"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="147"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="domain" description="FtsK" evidence="11">
        <location>
            <begin position="418"/>
            <end position="623"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="178"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="239"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="178"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="239"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="270"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="435"/>
            <end position="442"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006474"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00289"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO20462.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="775" mass="85588" checksum="6917672F8F7E909E" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXB5</accession>
    <name>A0A0M2UXB5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Nucleoside diphosphate kinase</fullName>
            <ecNumber evidence="1">2.7.4.6</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01709</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 2'-deoxyribonucleoside 5'-diphosphate + ATP = a 2'-deoxyribonucleoside 5'-triphosphate + ADP</text>
            <dbReference type="Rhea" id="RHEA:44640"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:73316"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.6"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.6" evidence="1"/>
    <dbReference type="EMBL" id="LAQJ01000176">
        <property type="protein sequence ID" value="KKO19601.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19601">
        <property type="protein sequence ID" value="KKO19601"/>
        <property type="gene ID" value="BROFUL_01709"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004550">
        <property type="term" value="F:nucleoside diphosphate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.141">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034907">
        <property type="entry name" value="NDK-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036850">
        <property type="entry name" value="NDK-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023005">
        <property type="entry name" value="Nucleoside_diP_kinase_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00334">
        <property type="entry name" value="NDK"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00562">
        <property type="entry name" value="NDK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54919">
        <property type="entry name" value="SSF54919"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00469">
        <property type="entry name" value="NDP_KINASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NDK" evidence="2">
        <location>
            <begin position="175"/>
            <end position="379"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU004013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19601.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="392" mass="43842" checksum="F9D804CD204C2444" modified="2015-11-11" version="1">MTYALITPYSLLKSRTGGILGRLLSLSNLDFVGATMFAPSDAFVDKYAATIEEQDCKPAWKKVMKDYINSNFRKVNKFGITNRMVLLFFRGPRALEKLKDEVIGPITSFQGHTIRGSFGDFVESSDGKIEYFEPAVVSAADHRTNDKQLALFAEYLSSDGGVLEDIVKFSEGVKAETTLVILKPFEEQSPLPGNMIDMFSRTGLFIVGVKLLRMSINQADEFYGPLINIFREKLKPKPEKIAGKLRESFQSVFTFEVPNAIVNSHAEQLSEQLKDMNAMNEFNKIVQYMTGLDPVKSSPADKKKPGTARCLALLYRGPDAISKIRNILGPTDSKKGEPGKVRRIYGEDIMKNAAHASDAVENAEHERKIIGLWDNTSADELKEMIQSYLRTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXC5</accession>
    <name>A0A0M2UXC5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Folyl-polyglutamate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_01646</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the folylpolyglutamate synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19611">
        <property type="protein sequence ID" value="KKO19611"/>
        <property type="gene ID" value="BROFUL_01646"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2032"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004326">
        <property type="term" value="F:tetrahydrofolylpolyglutamate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001645">
        <property type="entry name" value="Folylpolyglutamate_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018109">
        <property type="entry name" value="Folylpolyglutamate_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036565">
        <property type="entry name" value="Mur-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004101">
        <property type="entry name" value="Mur_ligase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036615">
        <property type="entry name" value="Mur_ligase_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013221">
        <property type="entry name" value="Mur_ligase_cen"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11136">
        <property type="entry name" value="PTHR11136"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02875">
        <property type="entry name" value="Mur_ligase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08245">
        <property type="entry name" value="Mur_ligase_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001563">
        <property type="entry name" value="Folylpolyglu_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53244">
        <property type="entry name" value="SSF53244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53623">
        <property type="entry name" value="SSF53623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01499">
        <property type="entry name" value="folC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01011">
        <property type="entry name" value="FOLYLPOLYGLU_SYNT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01012">
        <property type="entry name" value="FOLYLPOLYGLU_SYNT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mur_ligase_M" evidence="6">
        <location>
            <begin position="47"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_C" evidence="5">
        <location>
            <begin position="305"/>
            <end position="381"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR001563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="440" mass="49044" checksum="B13E26AE3A4AC5B4" modified="2015-11-11" version="1">MAFLYKAIDYEKLISYQYNASTFSLDRMEKLLAHMGNPHKNLSCVHITGTKGKGSTAIMMATIMEYAGLVTGLFTSPHLIDLKERIQINRQKIAETEFASIMDELQPYIRYLQETSPSASPTFFEILTALSMVYFQRKRTEMAVLEVGLGGRLDSTNVVVPLASIITNIGFDHTSILGNTLSSIAYEKAGIIKQGVPLVSGIEGAEALSVVEKTCREKNASLYLLGRDIWIEEVKHLVKDGIRGILCRIKTWRYTYDNIYLPLAGIHQARNCALVFGALEILRERGIIAVNDDTIRKALAALHCPARIEVIAENPCIILDFAHTADSMRFLKKALIENFTFRKLIIVLGFSQDKDMDTILKEIVMEADSIIVTRSKNPRAAAPGDLYQRIERISGKQPEIVNNVQDAVIMAKQMASHEDMICITGSSYVAGEARQALYIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXH4</accession>
    <name>A0A0M2UXH4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acetate-CoA ligase (ADP-forming) subunit beta</fullName>
            <ecNumber evidence="3">6.2.1.13</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">acdB</name>
        <name evidence="3" type="ORF">BROFUL_02152</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.2.1.13" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19169.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19169">
        <property type="protein sequence ID" value="KKO19169"/>
        <property type="gene ID" value="BROFUL_02152"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2685"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043758">
        <property type="term" value="F:acetate-CoA ligase (ADP-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="2">
        <location>
            <begin position="33"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19169.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="247" mass="26949" checksum="7BD09F5A7C415EE9" modified="2015-11-11" version="1">MNRSKAKGSETIRNIIQKTLHEQRYELLEPEAKQLIEAFGIKTTEHGVAPSREEAVRVARSLGYPVALKIVSPDISHKTDVGGVRLGIRDDDSVGDAYDEIMGNATKTMPSARIYGVIVQEMATPSTEVIIGGLRDPQFGPAVMFGLGGIFVEVFQDVSFRIAPVGEHEAFDMIYSVKGFRILKRFRNREAADVAALAQAIVKVSDIMVDTEEIKEIDLNPVLVYPQGLKAVDARIILGHSNGGTSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXL9</accession>
    <name>A0A0M2UXL9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00446</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000058">
        <property type="protein sequence ID" value="KKO20833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20833">
        <property type="protein sequence ID" value="KKO20833"/>
        <property type="gene ID" value="BROFUL_00446"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.558"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="SSF49899"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="7"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="414"/>
            <end position="436"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="417"/>
            <end position="436"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="621" mass="66359" checksum="A61D02E33F8AB39F" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXP7</accession>
    <name>A0A0M2UXP7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ABC transporter ATP-binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_01558</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000162">
        <property type="protein sequence ID" value="KKO19736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19736">
        <property type="protein sequence ID" value="KKO19736"/>
        <property type="gene ID" value="BROFUL_01558"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="25"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="63"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="133"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="166"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="256"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="289"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="27"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="343"/>
            <end position="579"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="377"/>
            <end position="384"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="587" mass="66544" checksum="AF6863D0465AC16C" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY00</accession>
    <name>A0A0M2UY00_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01943</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000199">
        <property type="protein sequence ID" value="KKO19344.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19344">
        <property type="protein sequence ID" value="KKO19344"/>
        <property type="gene ID" value="BROFUL_01943"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19344.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="73" mass="8461" checksum="CDA19B3416D8FDBC" modified="2015-11-11" version="1">MRGKKAIGFEVKAATVWKKEYSGVLNQRFREKLLQKCFGIYLGDTRLKDHEVHVLPLKEFMRDIALGKILNIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY20</accession>
    <name>A0A0M2UY20_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Type I site-specific deoxyribonuclease</fullName>
            <ecNumber evidence="3">3.1.21.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">BROFUL_00523</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Endonucleolytic cleavage of DNA to give random double-stranded fragments with terminal 5'-phosphates, ATP is simultaneously hydrolyzed.</text>
            <dbReference type="EC" id="3.1.21.3"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the HsdR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.21.3" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000072">
        <property type="protein sequence ID" value="KKO20752.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20752">
        <property type="protein sequence ID" value="KKO20752"/>
        <property type="gene ID" value="BROFUL_00523"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009035">
        <property type="term" value="F:type I site-specific deoxyribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007409">
        <property type="entry name" value="Restrct_endonuc_type1_HsdR_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04313">
        <property type="entry name" value="HSDR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0680">Restriction system</keyword>
    <feature type="domain" description="HSDR_N" evidence="11">
        <location>
            <begin position="4"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="285"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012654"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF04313"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO20752.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="285" mass="31902" checksum="056FD056658F6042" modified="2015-11-11" version="1" fragment="single">MSKITESDIEQYTIEELKTLGFQFLHGPDIAPDGEFPERQAYSDIVLVGRLRAAIQRLNPNIPAGAREQALREVQRINSPELLTNNESFHHFLTDGVPVTYRSPLPLGEVGRGSDEKSDYVWLIDFNNPLNNEFLMVNQYTVIENNQNKRPDILLFVNGIPLVLIELKNPADENATIKKAFDQIQTYKATIPSLFTFNAFCVISDGHECKAGSTSAGYNRFMAWKLANGKKEVSKFVPELEILIQGMLNPITLLDLVRNFIVFEKSISTKPSPLHPSPSGRGNAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY31</accession>
    <name>A0A0M2UY31_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">Imidazoleglycerol-phosphate dehydratase</fullName>
            <shortName evidence="5">IGPD</shortName>
            <ecNumber evidence="5 6">4.2.1.19</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">hisB</name>
        <name evidence="7" type="ORF">BROFUL_00504</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5 6">
            <text>D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate = 3-(imidazol-4-yl)-2-oxopropyl phosphate + H2O</text>
            <dbReference type="Rhea" id="RHEA:11040"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:57766"/>
            <dbReference type="ChEBI" id="CHEBI:58278"/>
            <dbReference type="EC" id="4.2.1.19"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 5 6">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 6/9.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5 6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5 6">Belongs to the imidazoleglycerol-phosphate dehydratase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.19" evidence="5 6"/>
    <dbReference type="EMBL" id="LAQJ01000069">
        <property type="protein sequence ID" value="KKO20777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20777">
        <property type="protein sequence ID" value="KKO20777"/>
        <property type="gene ID" value="BROFUL_00504"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.633"/>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00011"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004424">
        <property type="term" value="F:imidazoleglycerol-phosphate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07914">
        <property type="entry name" value="IGPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.40">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00076">
        <property type="entry name" value="HisB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038494">
        <property type="entry name" value="IGPD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000807">
        <property type="entry name" value="ImidazoleglycerolP_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020565">
        <property type="entry name" value="ImidazoleglycerP_deHydtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23133">
        <property type="entry name" value="PTHR23133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00475">
        <property type="entry name" value="IGPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00954">
        <property type="entry name" value="IGP_DEHYDRATASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00955">
        <property type="entry name" value="IGP_DEHYDRATASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5 6" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="4 5 6" id="KW-0456">Lyase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000599"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="196" mass="21466" checksum="69F0E773A3A96897" modified="2015-11-11" version="1">MPKRTATIRRKTKETEISLTVNIDGKGDSRITTDIGFLDHMLDILAKHSLFDLELKAVGDRIIDDHHTVEDVGICLGQGIKEALGDKKGIRRFSNASVPMQETLASIALDISGRPALVYHVTFPAGKIGNFDAELVKEFLEAFSTNAGINLHVNVPYGSNTHHIAEAIFKGLARALRDAVRIDERVKDVPSTKGIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY45</accession>
    <name>A0A0M2UY45_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00795</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000101">
        <property type="protein sequence ID" value="KKO20480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20480">
        <property type="protein sequence ID" value="KKO20480"/>
        <property type="gene ID" value="BROFUL_00795"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1008"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026350">
        <property type="entry name" value="GxxExxY"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13366">
        <property type="entry name" value="PDDEXK_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04256">
        <property type="entry name" value="GxxExxY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="53" mass="5866" checksum="BBE731438D49A9DE" modified="2015-11-11" version="1">MKEENRKDAKDAKGKMDIEEVGKKIIGAAIKVHCALGPGLLESSYQKCLDYEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY50</accession>
    <name>A0A0M2UY50_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative chemotaxis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00257</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000031">
        <property type="protein sequence ID" value="KKO21008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21008">
        <property type="protein sequence ID" value="KKO21008"/>
        <property type="gene ID" value="BROFUL_00257"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07185">
        <property type="entry name" value="OmpA_C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006665">
        <property type="entry name" value="OmpA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036737">
        <property type="entry name" value="OmpA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00691">
        <property type="entry name" value="OmpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103088">
        <property type="entry name" value="SSF103088"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51123">
        <property type="entry name" value="OMPA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OmpA-like" evidence="4">
        <location>
            <begin position="87"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="218"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="39"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO21008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="257" mass="28435" checksum="6423D7B9C06AD98E" modified="2015-11-11" version="1">MLKNGKYIKLFLLIVFAGMSGCAEMNELRNLNRRQAITIRDQSEEIARLKGQLSSTSDKLKANEAEMEKLRKLARSIGEGATVRDTVEGPVLLFPERILYDSGMATIKPQGEIALKKVAVFLNENPQISIRIDGHTDTDPIRRTKHLWDSNHHLSAARSLSVFHFLTKSEGIREGRIYVAGFGPNRPIASNSTTAGKKENRRVEFLILTAVASLPPKESSILTERIPESAGRPEAIPTETGTTEAEVSEEIEEGEGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY77</accession>
    <name>A0A0M2UY77_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01861</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000192">
        <property type="protein sequence ID" value="KKO19429.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19429">
        <property type="protein sequence ID" value="KKO19429"/>
        <property type="gene ID" value="BROFUL_01861"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007160">
        <property type="entry name" value="DUF362"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04015">
        <property type="entry name" value="DUF362"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12838">
        <property type="entry name" value="Fer4_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="187"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="216"/>
            <end position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19429.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="364" mass="39061" checksum="592B5449EDF0CF9E" modified="2015-11-11" version="1">MKSKVYFIKVENGEGVASVAQKARHLFDVAGFASAIQKNNMVAVKTSFGEKGNIGHLKPPIIKAVVDKVKACHGKPFLIETNTLYVGRRTNAVDHISHAHEHGFSYENTGAPIIIGDGLFGEHGVQVEINQKLCKYAYVAGVAQAANVIVSIAHVTGHLATGMGATLKNIGMGLSARGGKLAQHSGVIPQILKKRCNTCGACGKWCPVGAIHMDEQYAVIDSKLCIGCGECLAVCQFGAVKIAWDENTVNLQKKVAEYCLAILKGKTGKAVFFNFLTHITKHCDCMDKPFEPDIADIGIIASTDPVAIEKATADIIRDQIGSDFFKDAWPQIDYTIQIAYAQEIGLGSMDYELIPCGQDAGVVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYE3</accession>
    <name>A0A0M2UYE3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Peptide chain release factor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01260</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the prokaryotic/mitochondrial release factor family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO19991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19991">
        <property type="protein sequence ID" value="KKO19991"/>
        <property type="gene ID" value="BROFUL_01260"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1557"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003747">
        <property type="term" value="F:translation release factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000352">
        <property type="entry name" value="Pep_chain_release_fac_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045853">
        <property type="entry name" value="Pep_chain_release_fac_I_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00472">
        <property type="entry name" value="RF-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75620">
        <property type="entry name" value="SSF75620"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00745">
        <property type="entry name" value="RF_PROK_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RF_PROK_I" evidence="3">
        <location>
            <begin position="42"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="122"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS00745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="162" mass="18777" checksum="578119AB7D797906" modified="2015-11-11" version="1">MNNSRDVFDTAYLKKLMNQKNIIQITRTISINEHEIQCDFIRASGPGGQNVNKVATAVQLRFNVRKCPSLPEDIRERLVRIAGKRITRDGIVIMIARRFRTQEGNRQDAINRLVALIQKAAEKPKPRRQTMPTLASKRRRLDFKDHRRCTKRLRQSSPQADS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYE7</accession>
    <name>A0A0M2UYE7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01272</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20001.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20001">
        <property type="protein sequence ID" value="KKO20001"/>
        <property type="gene ID" value="BROFUL_01272"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20001.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="106" mass="12089" checksum="C31C8CD693DCB738" modified="2015-11-11" version="1">MFVTDALLQGETIIRQASTSVVHTRVRPSLAVSCGVIEYYCIEISFFVSFSQTPFQEVPFFMSERLLRFTRNDNVQCTIKVHGWCHCEAFSEAISPLFIKGNTLVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYL3</accession>
    <name>A0A0M2UYL3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01210</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000130">
        <property type="protein sequence ID" value="KKO20071.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20071">
        <property type="protein sequence ID" value="KKO20071"/>
        <property type="gene ID" value="BROFUL_01210"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="SSF49899"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="260"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="266"/>
            <end position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20071.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="524" mass="57043" checksum="30C737DD9E24E6E6" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYM6</accession>
    <name>A0A0M2UYM6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01686</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000176">
        <property type="protein sequence ID" value="KKO19579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19579">
        <property type="protein sequence ID" value="KKO19579"/>
        <property type="gene ID" value="BROFUL_01686"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644105" evidence="1">
        <location>
            <begin position="25"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="110" mass="12947" checksum="64193BC0AFADDE2C" modified="2015-11-11" version="1">MRLMKKKKCLSWVFFLLAIFSIGAFSSHRTMAESDSKIGVLIIGHGYFSQNPNFFSLVDEVKNRLPDYQVDSGLHMVMDMMTYKMWQTEDEAFVVWRLKVWIRLLSSRCI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYP1</accession>
    <name>A0A0M2UYP1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00572</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000079">
        <property type="protein sequence ID" value="KKO20705.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20705">
        <property type="protein sequence ID" value="KKO20705"/>
        <property type="gene ID" value="BROFUL_00572"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20705.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="119" mass="12880" checksum="C4A3BF45F382723D" modified="2015-11-11" version="1">MSYLEGLDAMTQGQFPEAVAAFSRALDASGDDPDYVLARGVAETLAEQFHPAMKDLERYQRLGGKGREAELWTYVAEAMSGIATPGHAIPGPRTSRAGKANLRIPSKGRHTALFQYLAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYP3</accession>
    <name>A0A0M2UYP3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00322</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000040">
        <property type="protein sequence ID" value="KKO20942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20942">
        <property type="protein sequence ID" value="KKO20942"/>
        <property type="gene ID" value="BROFUL_00322"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="104" mass="11871" checksum="ED44AF6174F4F39C" modified="2015-11-11" version="1" fragment="single">MTNKYPAFILALKKEAKVSGISKKPKLSLSPEQLCKLENTARSRTAPLREVKRAQVLLKKYQEESITAIQKSIGLSRETIYKYIEKALALGPEEALRDKYHRPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYR0</accession>
    <name>A0A0M2UYR0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Methyltransferase</fullName>
            <ecNumber evidence="3">2.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01678</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the N(4)/N(6)-methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.-" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000174">
        <property type="protein sequence ID" value="KKO19609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19609">
        <property type="protein sequence ID" value="KKO19609"/>
        <property type="gene ID" value="BROFUL_01678"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2073"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008170">
        <property type="term" value="F:N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006306">
        <property type="term" value="P:DNA methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002941">
        <property type="entry name" value="DNA_methylase_N4/N6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001091">
        <property type="entry name" value="RM_Methyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01555">
        <property type="entry name" value="N6_N4_Mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00508">
        <property type="entry name" value="S21N4MTFRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N6_N4_Mtase" evidence="4">
        <location>
            <begin position="11"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU362026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="203" mass="22449" checksum="8DDD87A3FD9EDB39" modified="2015-11-11" version="1">MGSDDPIYVVQTSTKAIQRCLLMTTDPGDLVLDITCGSGTTAHVAENWGRRWITCDTSRVAITLAKQRLMTAVYDYYELAHPHEGVGSGFQYKTVPHITLKSIANNEPPAQETLYDQPFIDSKRLRVTGPFTVEAVPAPTAVMSGEGLVISERNSLTTDHYPLTTAIARSGETLRQSNWRDELLRAGVRAKGGKLIEFIRVER</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYV6</accession>
    <name>A0A0M2UYV6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01110</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20151">
        <property type="protein sequence ID" value="KKO20151"/>
        <property type="gene ID" value="BROFUL_01110"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="165" mass="18809" checksum="039C36F28DE412F6" modified="2015-11-11" version="1">MPLSPSALPLSIKLSDFFTSHTVSFIRRALIVPIAFHISWDKSDHLILSCLHIFRLAWHCHRQGCLSPFAEKQCTCPGFSHSVLWCIYLRPKPAPAYLWSADTYLKDRDGKGRPPNSGGCYNGYSDTDFGCWLLVVSCWKYSGKGFLCIDLKSLKFGRRQWFSVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ33</accession>
    <name>A0A0M2UZ33_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00365</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000047">
        <property type="protein sequence ID" value="KKO20895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20895">
        <property type="protein sequence ID" value="KKO20895"/>
        <property type="gene ID" value="BROFUL_00365"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="150" mass="16541" checksum="848C0BC3404699FF" modified="2015-11-11" version="1">MSITRALARSNRSTEPTTKSISHVSPNGGCASLHPPLSTTRFKNLIQGFTAKSKGGFLYFPFQRRDIACPPTKGIFFSTSCQKGLYLRPLPKLIVPTFLPNTTKNVCYITLHEGMRSRLYRRTHREDIKGTIGAARYFAGKTVCNGASAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ47</accession>
    <name>A0A0M2UZ47_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01545</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000160">
        <property type="protein sequence ID" value="KKO19744.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19744">
        <property type="protein sequence ID" value="KKO19744"/>
        <property type="gene ID" value="BROFUL_01545"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011249">
        <property type="entry name" value="Metalloenz_LuxS/M16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011765">
        <property type="entry name" value="Pept_M16_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007863">
        <property type="entry name" value="Peptidase_M16_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00675">
        <property type="entry name" value="Peptidase_M16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05193">
        <property type="entry name" value="Peptidase_M16_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63411">
        <property type="entry name" value="SSF63411"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644114" evidence="1">
        <location>
            <begin position="29"/>
            <end position="496"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M16" evidence="2">
        <location>
            <begin position="90"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M16_C" evidence="3">
        <location>
            <begin position="232"/>
            <end position="409"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00675"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF05193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19744.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="496" mass="56095" checksum="169E1A088A3310DB" modified="2015-11-11" version="1">MNKKKYCAFPVACIVGMLFLVYSMSLCAQPKGHEHAMTPPAGKPESEGARMVSGFTFKPLNFVPPKVDRATLENGMIVYLLEDHDLPLFNISMRIRTGAVYEPPEKAGLASLTGYVMRSGGTTAMPADAMNKELEFIAASVETSIDRESGSASLSVLRKDIDKGLKIFADVIMNPAFPEDKIKMRKDEVLEAIRRENDNPSQIAHREFRRIVYESRHPYSRKVEGTPETIAKITRDDLVSFHKDYFRPQNSILGISGDFNKDEMIRKLNAVFSGWKKEDVRFPEVPRVESRFEKSVSYVYKDINQANVIMGHLGIQRRSPDYFPVMLMNFILGGGSFTARIPGRIRSDEGLAYSAHSAFQTARDLGMFFVACQTKSESTNRAISIALEELDKIRKTPVDKEELSQAKETFMNQFVFRFTTSASIVAQKVDIEYEGLPMNYLETYQENVQAVTQDDIQKVARKYLHPDQIKILVVGDREKFDKPLDSFGKVSVIELK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ77</accession>
    <name>A0A0M2UZ77_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DNA gyrase inhibitor YacG</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">yacG</name>
        <name evidence="2" type="ORF">BROFUL_00158</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Binds 1 zinc ion.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Interacts with GyrB.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DNA gyrase inhibitor YacG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000017">
        <property type="protein sequence ID" value="KKO21112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21112">
        <property type="protein sequence ID" value="KKO21112"/>
        <property type="gene ID" value="BROFUL_00158"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008657">
        <property type="term" value="F:DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.50.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00649">
        <property type="entry name" value="DNA_gyrase_inhibitor_YacG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005584">
        <property type="entry name" value="DNA_gyrase_inhibitor_YacG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013088">
        <property type="entry name" value="Znf_NHR/GATA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36150">
        <property type="entry name" value="PTHR36150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03884">
        <property type="entry name" value="YacG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="1">
        <location>
            <position position="13"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="16"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="34"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="38"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="74" mass="8978" checksum="BF9A5588926E2D3A" modified="2015-11-11" version="1">MTNQKRDMKGMRCPHCERMFFYRMVHDIPTFPFCSERCKLVDLGAWLDEKYRIEEPVSAEALKELEKKERREHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZE0</accession>
    <name>A0A0M2UZE0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DNA mismatch repair protein MutL</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">mutL</name>
        <name evidence="1" type="ORF">BROFUL_00069</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000008">
        <property type="protein sequence ID" value="KKO21187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21187">
        <property type="protein sequence ID" value="KKO21187"/>
        <property type="gene ID" value="BROFUL_00069"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.86"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="509" mass="59189" checksum="8A18A9579897F42B" modified="2015-11-11" version="1">MKKIASIPNDKRTLVNMTSSIDYTKYQTVEAIPKASSMIETLRAVGYSIEAAIADIIDNSISARAKNILVNFEWKGSRTWLSVKDDGRGMDNEELIQAMRPGSKNPLDDRSRKDLGRFGLGLKTASFSQCRKLSVISKRENYKPVFWTWDLDFVKQTCNWELIKYLPQGNFENEINSVKSGTIVIWNDIDRLVKDLQKNDENALDKFLEIMKHVKKHLAMVFHRFIENGRIKIFFQDRPVEAWNPFLPNEPATQGFPEEPFYNGKVLVKGYVLPHKSKISEDKFKEAEGPKGWNEQQGFYIYRNERLLLAGDWLGMFRKEEHYKLARIEINLPNNLDSEWQIDIKKSIARPPLALRDQLKAYAGKVRSQAVEVYRHKGKNVKPYPGQKFVPLWIDHKRGDKWFYKINREHPLIEKIRKQAEEKPDKAIDTLLKFIEETIPVKSIYIREAEEPEAQGKPFEGIKHDDIWTLMKNIFDSLTKQGKTKEEAKAVIVNLGPFNHYPEYIANLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZJ0</accession>
    <name>A0A0M2UZJ0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="11">DEAD/DEAH box helicase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BROFUL_01384</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="6">Belongs to the DEAD box helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000142">
        <property type="protein sequence ID" value="KKO19909.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19909">
        <property type="protein sequence ID" value="KKO19909"/>
        <property type="gene ID" value="BROFUL_01384"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1706"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003724">
        <property type="term" value="F:RNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000629">
        <property type="entry name" value="RNA-helicase_DEAD-box_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014014">
        <property type="entry name" value="RNA_helicase_DEAD_Q_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00039">
        <property type="entry name" value="DEAD_ATP_HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51195">
        <property type="entry name" value="Q_MOTIF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 6 11" id="KW-0347">Helicase</keyword>
    <keyword evidence="2 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Q_MOTIF" evidence="10">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase ATP-binding" evidence="8">
        <location>
            <begin position="32"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="9">
        <location>
            <begin position="229"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="377"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Q motif" evidence="5">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="7">
        <location>
            <begin position="385"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="406"/>
            <end position="434"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO19909.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="445" mass="49260" checksum="1313CDA464AD43C9" modified="2015-11-11" version="1">MDFKSFHFHPHIAAGVQAAGYTTPTPVQLQSIPPILQGRDIMALAQTGTGKTAAFVLPILQRLMQGPRGRLRALIIAPTRELAEQIHDTIGELGRQTGLRSVTIYGGVAINPQIQKLRRGAEIAVACPGRLLDHIRQGTINTATLEILVLDEADRMFDMGFLPDIRKILKHLPAQRQTLFFSATMPSDIRHLAHDILRDPVTVQIDHTVPLTTVSHALYPVDKHLKTALLMEILHHTDTESVLVFTRTKHRARQIARQLKNAGHGATSLQGNLSQNQRQAALDGFRDGSFKILVATDIAARGIDVSRISHVINYDIPDTAEAYTHRIGRTGRAAKTGDAFTLVTREDASMVRTIESALGVKLERRTLKDFTYTAPAQKTASALHQPPRSHKHKQATARRTRQKRAASGTDTQTTSFTRTTKHRHSQVSPVTDSPTRRSRHSRGAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZY9</accession>
    <name>A0A0M2UZY9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_00121</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the MIP/aquaporin (TC 1.A.8) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000015">
        <property type="protein sequence ID" value="KKO21160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21160">
        <property type="protein sequence ID" value="KKO21160"/>
        <property type="gene ID" value="BROFUL_00121"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.152"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015267">
        <property type="term" value="F:channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1080.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023271">
        <property type="entry name" value="Aquaporin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034294">
        <property type="entry name" value="Aquaporin_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000425">
        <property type="entry name" value="MIP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022357">
        <property type="entry name" value="MIP_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19139">
        <property type="entry name" value="PTHR19139"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00230">
        <property type="entry name" value="MIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00783">
        <property type="entry name" value="MINTRINSICP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81338">
        <property type="entry name" value="SSF81338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00861">
        <property type="entry name" value="MIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00221">
        <property type="entry name" value="MIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="37"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="86"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="128"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="159"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="202"/>
            <end position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO21160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="228" mass="23859" checksum="69B146E2024B305F" modified="2015-11-11" version="1">MKAYKKYLAELVGTFALVFIAAGSVCADFYLRQAGGQGLGLLGISIAFGVVVIAVIYATSYVSGAHVNPAVTISFWISKRMDPNTAIMYIISQIAGATVAGLALKALFPDALNTVYLGTCMLSPGVSIGRGILMEFIITFLLVFTIYGTLVDKRATAGFAGIAVGLVVLFGVMIGGTISGGAMNPARVFGPAIASGQFTHHYVWWIGPILGGIAAGFVYDQLFADVKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V004</accession>
    <name>A0A0M2V004_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00735</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000092">
        <property type="protein sequence ID" value="KKO20541.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20541">
        <property type="protein sequence ID" value="KKO20541"/>
        <property type="gene ID" value="BROFUL_00735"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20541.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="261" mass="30319" checksum="B5B0D69229C89115" modified="2015-11-11" version="1">MDAFAKKYPRCRIIVTSRPIGLKSEDYPGYRPLDLLPLDDLVMKEYLGKWFKDDTDKIDVLWKTFGDKPRIRALAANPFLLSMICFTFGIDDKAELIERRSQLYANCTRSLLDRPYDTDQRQTGKVHITYEEALGLLKDISLKFFLWQEADFDPDHVKVIGRSHPTAALPGKTDEVLDLLQRETGLIQRLKEGYTFVHRSLWEYFTALALLEKKQEFVIRHAANPDWEEVVRLYAGLLVQDDDVKALINGLWTINRHLRCG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V041</accession>
    <name>A0A0M2V041_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Alginate_exp domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00700</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20581">
        <property type="protein sequence ID" value="KKO20581"/>
        <property type="gene ID" value="BROFUL_00700"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.889"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025388">
        <property type="entry name" value="Alginate_export_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13372">
        <property type="entry name" value="Alginate_exp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644206" description="Alginate_exp domain-containing protein" evidence="2">
        <location>
            <begin position="23"/>
            <end position="556"/>
        </location>
    </feature>
    <feature type="domain" description="Alginate_exp" evidence="3">
        <location>
            <begin position="155"/>
            <end position="543"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="34"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="556" mass="61413" checksum="75F11E18A83590B6" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V075</accession>
    <name>A0A0M2V075_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nitrogen regulatory protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00720</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the P(II) protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20601.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20601">
        <property type="protein sequence ID" value="KKO20601"/>
        <property type="gene ID" value="BROFUL_00720"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.912"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030234">
        <property type="term" value="F:enzyme regulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006808">
        <property type="term" value="P:regulation of nitrogen utilization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002187">
        <property type="entry name" value="N-reg_PII"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011322">
        <property type="entry name" value="N-reg_PII-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015867">
        <property type="entry name" value="N-reg_PII/ATP_PRibTrfase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017918">
        <property type="entry name" value="N-reg_PII_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30115">
        <property type="entry name" value="PTHR30115"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00543">
        <property type="entry name" value="P-II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00340">
        <property type="entry name" value="PIIGLNB"/>
    </dbReference>
    <dbReference type="SMART" id="SM00938">
        <property type="entry name" value="P-II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54913">
        <property type="entry name" value="SSF54913"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00638">
        <property type="entry name" value="PII_GLNB_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51343">
        <property type="entry name" value="PII_GLNB_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20601.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="112" mass="12514" checksum="ECF04B80B700D55D" modified="2015-11-11" version="1">MKKIEAIIRPERLSIVKDALEELGYPGMTVTDVKGHGAQRGITEQWRGRTFRVDLLSKVKIEMVVSDEEVEKIVQCITKESQTGSIGDGKIFISTIDDVLRIRTGERGDKAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V083</accession>
    <name>A0A0M2V083_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01103</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20144.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20144">
        <property type="protein sequence ID" value="KKO20144"/>
        <property type="gene ID" value="BROFUL_01103"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022453">
        <property type="entry name" value="Znf_MqsA-type"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03831">
        <property type="entry name" value="YgiT_finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20144.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="83" mass="9571" checksum="7826A484044D3E81" modified="2015-11-11" version="1">MEEGQIMYGYKCEYCEGIVKERLVKQEVFKHKTGFIMLEDVPVGVCNLCGYRYYHSSILQGVEEIASGRRQPERTETIPVGHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0P1</accession>
    <name>A0A0M2V0P1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative ribokinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00993</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000118">
        <property type="protein sequence ID" value="KKO20284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20284">
        <property type="protein sequence ID" value="KKO20284"/>
        <property type="gene ID" value="BROFUL_00993"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016773">
        <property type="term" value="F:phosphotransferase activity, alcohol group as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002173">
        <property type="entry name" value="Carboh/pur_kinase_PfkB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011611">
        <property type="entry name" value="PfkB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00294">
        <property type="entry name" value="PfkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00583">
        <property type="entry name" value="PFKB_KINASES_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PfkB" evidence="3">
        <location>
            <begin position="42"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="120" mass="13326" checksum="1A55FABC81F07CF0" modified="2015-11-11" version="1">MNILVSGSLAYDRIMDFPGKFSDHILPDKTHMLNVCFMINGITENFGGTAGNIAYALSLMGETPTILATAGRDFEPYRNWLTQRNISTQYIKVIPDELTAGAYITTDQSDNQITAFNRAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V163</accession>
    <name>A0A0M2V163_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00366</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000047">
        <property type="protein sequence ID" value="KKO20896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20896">
        <property type="protein sequence ID" value="KKO20896"/>
        <property type="gene ID" value="BROFUL_00366"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="310" mass="35195" checksum="B3A9FC0A9164C9E5" modified="2015-11-11" version="1">MGGGKMPGIRFKEDMDGYLGENIRNFRDGEDYGIRHNNPIKFDVQITIDSVDDFIQVSSHEAKIAGKFYCASIGGDKGMTMRGGRFNLFDVNQETGHRNMRYRFTFTGPDGKEYYFAGFKDIFNDKAFDILDDLTTLFVRIYEGKDESGRLHGSGVMYFRIKDMASLKKMIQTSEVTGASNPLEKYATIAKYAGFFMAETLKTFAPGPRFLYTTRYENLVLSGNLKKEGEDTSRAFFFFSGEHDRGFPWGDEETMSDVALLISNGQEEPLRFGITRQSLKAYRSSWMAVATVTKANYIVFAMATPFHFPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1Z3</accession>
    <name>A0A0M2V1Z3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">N-acetylmuramic acid 6-phosphate etherase</fullName>
            <shortName evidence="3">MurNAc-6-P etherase</shortName>
            <ecNumber evidence="3">4.2.1.126</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">N-acetylmuramic acid 6-phosphate hydrolase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">N-acetylmuramic acid 6-phosphate lyase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">murQ</name>
        <name evidence="5" type="ORF">BROFUL_00550</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D-lactate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>H2O + N-acetyl-D-muramate 6-phosphate = (R)-lactate + N-acetyl-D-glucosamine 6-phosphate</text>
            <dbReference type="Rhea" id="RHEA:26410"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16004"/>
            <dbReference type="ChEBI" id="CHEBI:57513"/>
            <dbReference type="ChEBI" id="CHEBI:58722"/>
            <dbReference type="EC" id="4.2.1.126"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-sugar metabolism; N-acetylmuramate degradation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="3">A lyase-type mechanism (elimination/hydration) is suggested for the cleavage of the lactyl ether bond of MurNAc 6-phosphate, with the formation of an alpha,beta-unsaturated aldehyde intermediate with (E)-stereochemistry, followed by the syn addition of water to give product.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the GCKR-like family. MurNAc-6-P etherase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.126" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000077">
        <property type="protein sequence ID" value="KKO20714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20714">
        <property type="protein sequence ID" value="KKO20714"/>
        <property type="gene ID" value="BROFUL_00550"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.690"/>
    <dbReference type="UniPathway" id="UPA00342"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016835">
        <property type="term" value="F:carbon-oxygen lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046348">
        <property type="term" value="P:amino sugar catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097173">
        <property type="term" value="P:N-acetylmuramic acid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05007">
        <property type="entry name" value="SIS_Etherase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00068">
        <property type="entry name" value="MurQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005488">
        <property type="entry name" value="Etherase_MurQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005486">
        <property type="entry name" value="Glucokinase_regulatory_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040190">
        <property type="entry name" value="MURQ/GCKR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001347">
        <property type="entry name" value="SIS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10088">
        <property type="entry name" value="PTHR10088"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10088:SF5">
        <property type="entry name" value="PTHR10088:SF5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13580">
        <property type="entry name" value="SIS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00274">
        <property type="entry name" value="TIGR00274"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01272">
        <property type="entry name" value="GCKR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51464">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="1 3" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SIS" evidence="4">
        <location>
            <begin position="58"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="3">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="299" mass="32520" checksum="8D609E0FEECD379E" modified="2015-11-11" version="1">MEMEDRSQLLTEQRNQRTFNIDCKTTLEIIDSINAEDANVFTAVHKEREHIAKAVDVIVSAFRDGGRLLYVGAGTSGRLGILDASECPPTYGTDPGLIMGIIAGGEKAVFQSVEGAEDFPENGAKDIQLREVSHKDVVVGITTGGTTPYVMGALFEAKKRNAKTIFLCCNKETTPHFDVDVVIRPITGPEVITGSTRMKAGTATKLILNMLTTASMIKIGKVYENLMVDLRATNAKLTDRAERIIMTVTGISREAAKKLLEAAFGNAKVAIVMQKLGVDYPEARKRLDAQGGFVRKVLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V275</accession>
    <name>A0A0M2V275_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Serine/threonine protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00065</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000007">
        <property type="protein sequence ID" value="KKO21226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21226">
        <property type="protein sequence ID" value="KKO21226"/>
        <property type="gene ID" value="BROFUL_00065"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006468">
        <property type="term" value="P:protein phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="268" mass="30894" checksum="4536974824C80309" modified="2015-11-11" version="1">MYSIDKYHFKEFKIAPGHRANYAVLCNTEFEENQWGMKYSPANNYSREYKILPLFSHPQIPIRYKEGNAMMYKEGKSVIAQNYLIITHFEGADIVEYFQKRGLPDQDEMKRVIQYFSNATLPLHHMHSKGYIHSDIKPGHIILNPHTGTIALIDLECTIKIGEIICGMSKEYASPEQKQMIRMLRDGEEEKTVLKKVKMNAASDMYSVGLIFYRVLTGKLWQEANINPQEINKAIPDKLNRVLLGLLEENPDNRIPSAEALKKELATV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2A9</accession>
    <name>A0A0M2V2A9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">DNA mismatch repair protein MutS</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">mutS</name>
        <name evidence="10" type="ORF">BROFUL_00005</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 8">Belongs to the DNA mismatch repair MutS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000002">
        <property type="protein sequence ID" value="KKO21261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21261">
        <property type="protein sequence ID" value="KKO21261"/>
        <property type="gene ID" value="BROFUL_00005"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.7"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140664">
        <property type="term" value="F:ATP-dependent DNA damage sensor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030983">
        <property type="term" value="F:mismatched DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006298">
        <property type="term" value="P:mismatch repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1170.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00096">
        <property type="entry name" value="MutS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005748">
        <property type="entry name" value="DNA_mismatch_repair_MutS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007695">
        <property type="entry name" value="DNA_mismatch_repair_MutS-lik_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017261">
        <property type="entry name" value="DNA_mismatch_repair_MutS/MSH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000432">
        <property type="entry name" value="DNA_mismatch_repair_MutS_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007861">
        <property type="entry name" value="DNA_mismatch_repair_MutS_clamp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007696">
        <property type="entry name" value="DNA_mismatch_repair_MutS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016151">
        <property type="entry name" value="DNA_mismatch_repair_MutS_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036187">
        <property type="entry name" value="DNA_mismatch_repair_MutS_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007860">
        <property type="entry name" value="DNA_mmatch_repair_MutS_con_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036678">
        <property type="entry name" value="MutS_con_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045076">
        <property type="entry name" value="MutS_family"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11361">
        <property type="entry name" value="PTHR11361"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01624">
        <property type="entry name" value="MutS_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05188">
        <property type="entry name" value="MutS_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05192">
        <property type="entry name" value="MutS_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05190">
        <property type="entry name" value="MutS_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00488">
        <property type="entry name" value="MutS_V"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037677">
        <property type="entry name" value="DNA_mis_repair_Msh6"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00534">
        <property type="entry name" value="MUTSac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00533">
        <property type="entry name" value="MUTSd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48334">
        <property type="entry name" value="SSF48334"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53150">
        <property type="entry name" value="SSF53150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55271">
        <property type="entry name" value="SSF55271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01070">
        <property type="entry name" value="mutS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00486">
        <property type="entry name" value="DNA_MISMATCH_REPAIR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 7 8" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6 7 8" id="KW-0234">DNA repair</keyword>
    <keyword evidence="5 7 8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2 7 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA_MISMATCH_REPAIR_2" evidence="9">
        <location>
            <begin position="693"/>
            <end position="709"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="619"/>
            <end position="626"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006271"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00096"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS00486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO21261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="872" mass="98567" checksum="83A8901D3873C6C9" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2D7</accession>
    <name>A0A0M2V2D7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00400</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000054">
        <property type="protein sequence ID" value="KKO20864.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20864">
        <property type="protein sequence ID" value="KKO20864"/>
        <property type="gene ID" value="BROFUL_00400"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.498"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644280" evidence="1">
        <location>
            <begin position="27"/>
            <end position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20864.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="263" mass="28365" checksum="06877680DD947880" modified="2015-11-11" version="1">MKRGSALFTTALLALIPLVLGYSAHAETKKLDKTPPEHLYMKEKQQAPPVSHQDVSALSGKVVETMNSGGYTYLCIEKDGKKTWAAILETKVAVGQEIALQPGYEMVNFASKTLNRTFDKIIFSTGPASQEGTVDVKSFHGKTAETKTKEAAPAEKIQVEKASAADAYTVAELYGKKAELDTKNVTVRGKVVKVSSGIMGRNWLHVQDGTGNQQDGSNDLVVTSKDLAAVGDVVTISGTLYKDKDFGSGYKYDVIVEQASIKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V3I1</accession>
    <name>A0A0M2V3I1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Efflux transporter protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00058</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000007">
        <property type="protein sequence ID" value="KKO21219.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21219">
        <property type="protein sequence ID" value="KKO21219"/>
        <property type="gene ID" value="BROFUL_00058"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.72"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032317">
        <property type="entry name" value="HlyD_D23"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006143">
        <property type="entry name" value="RND_pump_MFP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16576">
        <property type="entry name" value="HlyD_D23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01730">
        <property type="entry name" value="RND_mfp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="41"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="domain" description="HlyD_D23" evidence="4">
        <location>
            <begin position="214"/>
            <end position="454"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="70"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF16576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO21219.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="539" mass="59936" checksum="CBABC080EFF20E1D" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V3K4</accession>
    <name>A0A0M2V3K4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DNA protecting protein DprA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00039</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the DprA/Smf family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000006">
        <property type="protein sequence ID" value="KKO21244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21244">
        <property type="protein sequence ID" value="KKO21244"/>
        <property type="gene ID" value="BROFUL_00039"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.52"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009294">
        <property type="term" value="P:DNA-mediated transformation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003488">
        <property type="entry name" value="DprA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041614">
        <property type="entry name" value="DprA_WH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010994">
        <property type="entry name" value="RuvA_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43022">
        <property type="entry name" value="PTHR43022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02481">
        <property type="entry name" value="DNA_processg_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17782">
        <property type="entry name" value="DprA_WH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47781">
        <property type="entry name" value="SSF47781"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00732">
        <property type="entry name" value="dprA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DprA_WH" evidence="2">
        <location>
            <begin position="309"/>
            <end position="361"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO21244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="366" mass="39758" checksum="5451E7D98E090AA5" modified="2015-11-11" version="1">MTELEALLRLNMTRGIGIRTYKTLLERFGSSEAILDASRTELEAVPGIGPKLAKAVVEESRTIDIEAEIELAGQKGVQILPYTSEHYPKHLKAIYDPPLVLYVRGSILETDILALAIVGARRCTYYGLSQAERFARLLAQKGLCIISGMARGIDAAAHRGAIGSKGRTIAVLGCGLGVIYPRENIELAEQIVQHGALVSEFSMKTPPDFRNFPPRNRLISGLSLGVLVVESSLKSGSLITAQWALEQGKEVFAIPGAIDNIYSRGTHKLIKEGAKLVEDVSDILQELGPLAETLSDGETSLANDPRNLALNSQEKKIFSLLSSSPKDIDEIIHITQLPTSVVTSTLLILEIKKLAKQLSGKRFVRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPH2</accession>
    <name>A0A0M2UPH2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Isoprenyl transferase</fullName>
            <ecNumber evidence="2">2.5.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03296</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="2">Binds 2 magnesium ions per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPP synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.-" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000301">
        <property type="protein sequence ID" value="KKO18018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18018">
        <property type="protein sequence ID" value="KKO18018"/>
        <property type="gene ID" value="BROFUL_03296"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4064"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004659">
        <property type="term" value="F:prenyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00475">
        <property type="entry name" value="Cis_IPPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01139">
        <property type="entry name" value="ISPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001441">
        <property type="entry name" value="UPP_synth-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018520">
        <property type="entry name" value="UPP_synth-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036424">
        <property type="entry name" value="UPP_synth-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10291">
        <property type="entry name" value="PTHR10291"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01255">
        <property type="entry name" value="Prenyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64005">
        <property type="entry name" value="SSF64005"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00055">
        <property type="entry name" value="uppS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01066">
        <property type="entry name" value="UPP_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="17"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="61"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="190"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="16"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="16"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="21"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="29"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="33"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="65"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="67"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="184"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="203"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="238" mass="27551" checksum="70D1A2A08193F806" modified="2015-11-11" version="1">MSENGEAPSHIAIIMDGNGRWARQRGLVRIRGHKEGVESVREITRECAKKHIRQLTLYAFSQENWKRPRREVNLLMKLLKDFLIGERGEIEENNIRLTAIGRISGLPEDVQRELAISIEESKDNTGMVLCLALNYGGRSEIVDAAKNIARSVKAGKMGLEEITEETFRRFLYTSEMTDPDLLIRTGGEMRVSNFLLWEISYTELWVTPVCWPDFRKRHLDEAIQEYARRERRFGGLQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPT2</accession>
    <name>A0A0M2UPT2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03205</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000293">
        <property type="protein sequence ID" value="KKO18103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18103">
        <property type="protein sequence ID" value="KKO18103"/>
        <property type="gene ID" value="BROFUL_03205"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3951"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="10"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="298" mass="34267" checksum="AD62D873D9053791" modified="2015-11-11" version="1">MELAPISLFVYNRLWHTQQTIEALKKNYLASESELIIFSDGPKSEADRENVLMVRNYAKTISGFKNVTIIERELNFGLAQSIIKGVTEVVGKYGRIIVLEDDMVTSTFFLKFMNESLEFYRDKEKVISIHGYIYPVKIELPETFFLRGADCWGWATWKRGWDLFEADGRKLLDEIKRSGLQKKFDIKGAYPYSEMLKDQINGKNDSWAIRWYASAFVKDRLTLYPGRSLIRNIGTDGSGTHCGMIGVYDTYVSVSSVRTGNIRIEENCHALREVEKYFKSIGPDIMGRLKGILVKVFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQB7</accession>
    <name>A0A0M2UQB7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">MgtE_N domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_03010</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18283.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18283">
        <property type="protein sequence ID" value="KKO18283"/>
        <property type="gene ID" value="BROFUL_03010"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006668">
        <property type="entry name" value="Mg_transptr_MgtE_intracell_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03448">
        <property type="entry name" value="MgtE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="domain" description="MgtE_N" evidence="3">
        <location>
            <begin position="172"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="122"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18283.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="249" mass="28027" checksum="3C2174C488AE599F" modified="2015-11-11" version="1">MKIPINKKMMMLPGIGIFVFGISVMGMLFMKGSKHPLPKQVSNPALQGEKKDDAVIKQIGTSTPGIAKSIKDKKERVTTKIPVVYKQNAANLFKPLSANEIAQMLKEIEIEKYKYEKRNDLLNFKEKILESLRTDLETERKELTALKLELNKMVDVIATKKTELKNESVQLDEIESKNIKKLAAVYSGMKPEKAAMIIKEMDEDTAVKLLTMMDGKSSARILESVDLNLAVKLSERLKLLKSDFKQGGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQC7</accession>
    <name>A0A0M2UQC7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Gly-zipper_OmpA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03235</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000295">
        <property type="protein sequence ID" value="KKO18087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18087">
        <property type="protein sequence ID" value="KKO18087"/>
        <property type="gene ID" value="BROFUL_03235"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025693">
        <property type="entry name" value="Gly-zipper_OmpA-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13436">
        <property type="entry name" value="Gly-zipper_OmpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005643938" description="Gly-zipper_OmpA domain-containing protein" evidence="1">
        <location>
            <begin position="25"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="domain" description="Gly-zipper_OmpA" evidence="2">
        <location>
            <begin position="69"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13436"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="142" mass="15055" checksum="61B0879DBD96F5EB" modified="2015-11-11" version="1">MKMEKARYFFVVLLSALFITSACATKKPVLYPNDYFNKVGRDAADKDVNDCTRLAKEHVGKYGREKRIAEQTAMGAAVGAATGAAAGAVRGNVGMGAATGAAAGAAGGLIFSLFKARDPDPVLKQYIEKCLSEKGYEVIGWK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQI7</accession>
    <name>A0A0M2UQI7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">NAD kinase</fullName>
            <ecNumber evidence="5">2.7.1.23</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">ATP-dependent NAD kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">nadK</name>
        <name evidence="6" type="ORF">BROFUL_03181</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>ATP + NAD(+) = ADP + H(+) + NADP(+)</text>
            <dbReference type="Rhea" id="RHEA:18629"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.23"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the NAD kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.23" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18132">
        <property type="protein sequence ID" value="KKO18132"/>
        <property type="gene ID" value="BROFUL_03181"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3923"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003951">
        <property type="term" value="F:NAD+ kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019674">
        <property type="term" value="P:NAD metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006741">
        <property type="term" value="P:NADP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.200.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00361">
        <property type="entry name" value="NAD_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017438">
        <property type="entry name" value="ATP-NAD_kinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017437">
        <property type="entry name" value="ATP-NAD_kinase_PpnK-typ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016064">
        <property type="entry name" value="NAD/diacylglycerol_kinase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002504">
        <property type="entry name" value="NADK"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01513">
        <property type="entry name" value="NAD_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111331">
        <property type="entry name" value="SSF111331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 5 6" id="KW-0418">Kinase</keyword>
    <keyword evidence="4 5" id="KW-0520">NAD</keyword>
    <keyword evidence="3 5" id="KW-0521">NADP</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 5" id="KW-0808">Transferase</keyword>
    <feature type="active site" description="Proton acceptor" evidence="5">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="57"/>
            <end position="58"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="131"/>
            <end position="132"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="142"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="161"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="169"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="172"/>
            <end position="177"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="231"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="280" mass="30654" checksum="A8B613042A285F7A" modified="2015-11-11" version="1">MKKILVLGDLSRKKIYDTIFGLKPWLDKHVVAEILDVSKGKKIEKIGAEIAIVFGGDGAILSTCRGLGKNQIPIIGVHMGRFGFLAELMEKNVCASLEKIFVGNYRVRKRMLLLSRVERAGNMISESMGINDAVISRSSLSRLISIKLNIDGEDVATYRADGLIISTPLGSTAHSLSAGGPLLTPDLHAFIIVPICPHTLTNRPLVVSADVKIEMEILSQLTGTGFTVDGQVFTDLEMGDKVKVERSDVEVQMIDTGERTFYGVLREKLNWGGQPNYGRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQR3</accession>
    <name>A0A0M2UQR3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03105</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000286">
        <property type="protein sequence ID" value="KKO18207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18207">
        <property type="protein sequence ID" value="KKO18207"/>
        <property type="gene ID" value="BROFUL_03105"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3834"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013767">
        <property type="entry name" value="PAS_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00989">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="27"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18207.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="266" mass="29761" checksum="E1580136F11B7C46" modified="2015-11-11" version="1">MIIYRTGCTNARKGKSEKNGENMSKPKILIADDIKQNVKLLRVILAASEYDVVEAYDGEEALAKAKGEHPDLILLDVMMPKMTGYEVCQKLRADEITKNIPIVMITALHEMDDRIKGIEAGADDFISKPFNKAELLARIKSLLRMRPGKEKPGEKDETAVLESILSNLKEGIIVTDGQWKIRNINQTAYELLHIQETDIKNADILPHLSRMKLSLPMEVITNTQEKTTDFQIADSNAEGPVNVNARMTKIFDAQGNVAGITFNLRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQX8</accession>
    <name>A0A0M2UQX8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02999</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18272">
        <property type="protein sequence ID" value="KKO18272"/>
        <property type="gene ID" value="BROFUL_02999"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3706"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13174">
        <property type="entry name" value="TPR_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="87"/>
            <end position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="306" mass="35275" checksum="CE40753C9A1CEE41" modified="2015-11-11" version="1">MLTKKWFMCIWIILSYVPSLIGDDHIDTHKIVKPLSLESKKVLAKPEMSNDIERLLLRPVKLEKEKTTIANQESVDYMFKPETEQNIEGITSILSAEKRKLNELENEYSKLEKELLGGVDAKNADLSVSKGSESSSASFSNDKVISVEKSEKKYPMKNTISSVGSSSDKPRVTKDEKLEKGISENLSYRLSKVVGNGKLLDVAECFYKLGEYNDALQTYKLITSSDVSLDQYRWTQYQIANCYRNMREFDLALSEYQRFVNQYPTGDLIESAEWYIDDVNWWKSWCEKNAVNNRRNLEISKIHKSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR12</accession>
    <name>A0A0M2UR12_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acriflavin resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03233</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000295">
        <property type="protein sequence ID" value="KKO18085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18085">
        <property type="protein sequence ID" value="KKO18085"/>
        <property type="gene ID" value="BROFUL_03233"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3981"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2090.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027463">
        <property type="entry name" value="AcrB_DN_DC_subdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001036">
        <property type="entry name" value="Acrflvin-R"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32063">
        <property type="entry name" value="PTHR32063"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00873">
        <property type="entry name" value="ACR_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00702">
        <property type="entry name" value="ACRIFLAVINRP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82714">
        <property type="entry name" value="SSF82714"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="340"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="364"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="390"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="435"/>
            <end position="455"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="467"/>
            <end position="494"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="528"/>
            <end position="549"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="859"/>
            <end position="879"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="886"/>
            <end position="906"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="912"/>
            <end position="930"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="975" mass="107113" checksum="4F0C2F6D13FD7BC9" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR23</accession>
    <name>A0A0M2UR23_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03197</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000293">
        <property type="protein sequence ID" value="KKO18095.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18095">
        <property type="protein sequence ID" value="KKO18095"/>
        <property type="gene ID" value="BROFUL_03197"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3942"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006558">
        <property type="entry name" value="LamG-like"/>
    </dbReference>
    <dbReference type="SMART" id="SM00560">
        <property type="entry name" value="LamGL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="SSF49899"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="LamGL" evidence="2">
        <location>
            <begin position="22"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="domain" description="LamGL" evidence="2">
        <location>
            <begin position="226"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18095.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="384" mass="42593" checksum="3EE60A0FA1F5369E" modified="2015-11-11" version="1" fragment="single">TTFYLAMKLIINLINATIYTTRNVAIFSGFRSNSNLQLREGFELRFPAGAPDTLEFVLVTQDRSGNRTTRTTRRNLLTSIGSWYHAVGIYNKTTGQQTLYVNGELVHTQTHPVGNTVVPMIYYPDMRIGHSRVNNGYFNGVIDDVRLYNRPLSDWEIRTLYHAFTGDLQVHYALDEGSGTIAGDSSGNGNHGAINGGAIWTGAPIANGLRFDGVDDHVTVPRINNDEISVTAWCYKNANDTTRNDAIFSGFRNSSNAQLREGFELRFPSGNPNTLQFVVVTQDGSGTRIMQMAQGNLGNSVGSWYHVTGTYNKTTGEQKLYVNGQLVNTQTHPAGNTVVPLTAYTDMRIGHSRVNAGYFNGILDDVRLYRRALSDQEVLDIFNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URH8</accession>
    <name>A0A0M2URH8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03086</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000285">
        <property type="protein sequence ID" value="KKO18240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18240">
        <property type="protein sequence ID" value="KKO18240"/>
        <property type="gene ID" value="BROFUL_03086"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="28"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="51" mass="5487" checksum="C27C8BE0B680A290" modified="2015-11-11" version="1">MITAIFASAMFFCGISTQFETTRYRITMTGIGGVAFCISLGLLATYPVALE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US36</accession>
    <name>A0A0M2US36_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">ATP synthase gamma chain</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">ATP synthase F1 sector gamma subunit</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">F-ATPase gamma subunit</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">atpG</name>
        <name evidence="10" type="ORF">BROFUL_02843</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 9">Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a, b and c.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the ATPase gamma chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000268">
        <property type="protein sequence ID" value="KKO18460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18460">
        <property type="protein sequence ID" value="KKO18460"/>
        <property type="gene ID" value="BROFUL_02843"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3517"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045261">
        <property type="term" value="C:proton-transporting ATP synthase complex, catalytic core F(1)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042777">
        <property type="term" value="P:proton motive force-driven plasma membrane ATP synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd12151">
        <property type="entry name" value="F1-ATPase_gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00815">
        <property type="entry name" value="ATP_synth_gamma_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035968">
        <property type="entry name" value="ATP_synth_F1_ATPase_gsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000131">
        <property type="entry name" value="ATP_synth_F1_gsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023632">
        <property type="entry name" value="ATP_synth_F1_gsu_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11693">
        <property type="entry name" value="PTHR11693"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00231">
        <property type="entry name" value="ATP-synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00126">
        <property type="entry name" value="ATPASEGAMMA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52943">
        <property type="entry name" value="SSF52943"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01146">
        <property type="entry name" value="ATPsyn_F1gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00153">
        <property type="entry name" value="ATPASE_GAMMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 9" id="KW-0139">CF(1)</keyword>
    <keyword evidence="4 9" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="5 9" id="KW-0406">Ion transport</keyword>
    <keyword evidence="6 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 9" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007681"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO18460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="291" mass="32921" checksum="9066360C410188B6" modified="2015-11-11" version="1">MLSTREIKQRIRSITSIKQITRAMEMVAASRLKKVESRVLASRAFTEKMHAVLSHLVSSLEGSHPWFAEKEQKIPAIKIILITADKGLCGAYNNNVIQKVVRFIKEKKGQEIKLTLIGKKGYSYFSKGNYASLIEKYLPESVEKLGYEQVQALAGQLIKGYERNEFSELHLFFTKFHTVMQSFSTSMRLLPIDKGAFETKEKKPAGEYIFEPNAAQIVDHLFPKFIETRLYQCILESLTSEYAARRVAMIAATENAGEMIDELVSSYNKARQAAITKELLEVVSGAEALVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US64</accession>
    <name>A0A0M2US64_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_02809</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000265">
        <property type="protein sequence ID" value="KKO18485.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18485">
        <property type="protein sequence ID" value="KKO18485"/>
        <property type="gene ID" value="BROFUL_02809"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3473"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01948">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001633">
        <property type="entry name" value="EAL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035919">
        <property type="entry name" value="EAL_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001610">
        <property type="entry name" value="PAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00563">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13426">
        <property type="entry name" value="PAS_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00052">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00086">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141868">
        <property type="entry name" value="SSF141868"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50883">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="3">
        <location>
            <begin position="7"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="4">
        <location>
            <begin position="160"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="5">
        <location>
            <begin position="209"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="7">
        <location>
            <begin position="294"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="domain" description="EAL" evidence="6">
        <location>
            <begin position="436"/>
            <end position="690"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18485.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="707" mass="80757" checksum="9A77B0824FA62287" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US65</accession>
    <name>A0A0M2US65_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Methylenetetrahydrofolate reductase</fullName>
            <ecNumber evidence="8">1.5.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_02633</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2 8">
            <text>(6S)-5-methyl-5,6,7,8-tetrahydrofolate + NAD(+) = (6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:19821"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:18608"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.5.1.20"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>(6S)-5-methyl-5,6,7,8-tetrahydrofolate + NADP(+) = (6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:19817"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:18608"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.5.1.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3 8">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4 8">One-carbon metabolism; tetrahydrofolate interconversion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the methylenetetrahydrofolate reductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.5.1.20" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18682">
        <property type="protein sequence ID" value="KKO18682"/>
        <property type="gene ID" value="BROFUL_02633"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3267"/>
    <dbReference type="UniPathway" id="UPA00193"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106312">
        <property type="term" value="F:methylenetetrahydrofolate reductase NADH activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106313">
        <property type="term" value="F:methylenetetrahydrofolate reductase NADPH activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006555">
        <property type="term" value="P:methionine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035999">
        <property type="term" value="P:tetrahydrofolate interconversion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00537">
        <property type="entry name" value="MTHFR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029041">
        <property type="entry name" value="FAD-linked_oxidoreductase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003171">
        <property type="entry name" value="Mehydrof_redctse-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02219">
        <property type="entry name" value="MTHFR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51730">
        <property type="entry name" value="SSF51730"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0274">FAD</keyword>
    <keyword evidence="5 8" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7 8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000431"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="316" mass="34357" checksum="818D443F378C12EE" modified="2015-11-11" version="1">MVENSSGIKSGSNLEKLLRSGQFAVTAELGPPRGADRSAIEKKAGILKGYGDAFNITDCQTAVVRMSSIAASRIVLDAGLEPIIQMTCRDRNRIAIQSDLLGAAALGAKNLLCLTGDHQKFGDHPMAKGVFDIDSIQLIHMVKTLRDGKKFQGGQELKASEPKFFIGAAENPFADPFKFRAIRLAKKIAAGADFIQTQIIYNTKKFKEWMKIVTDMGLHEKTFILAGVAPLKSAGMAKHMKHNVPGMDVSDEVVNRMTVASAAKKGKEEGMKICLEVIEQVREVKGVAGVHIMAVEWEEAVPEIVRQAGLYPRPVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USE1</accession>
    <name>A0A0M2USE1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Putative transporter protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_02277</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO18983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18983">
        <property type="protein sequence ID" value="KKO18983"/>
        <property type="gene ID" value="BROFUL_02277"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004869">
        <property type="entry name" value="MMPL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000731">
        <property type="entry name" value="SSD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03176">
        <property type="entry name" value="MMPL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50156">
        <property type="entry name" value="SSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="271"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="297"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="324"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="372"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="398"/>
            <end position="424"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="455"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="684"/>
            <end position="707"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="714"/>
            <end position="734"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="740"/>
            <end position="761"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="782"/>
            <end position="804"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="810"/>
            <end position="833"/>
        </location>
    </feature>
    <feature type="domain" description="SSD" evidence="7">
        <location>
            <begin position="302"/>
            <end position="423"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="843" mass="94194" checksum="6569DE3136FA3F03" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USE3</accession>
    <name>A0A0M2USE3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative heme protein large subunit NaxL</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02743</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000256">
        <property type="protein sequence ID" value="KKO18555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18555">
        <property type="protein sequence ID" value="KKO18555"/>
        <property type="gene ID" value="BROFUL_02743"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010980">
        <property type="entry name" value="Cyt_c/b562"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002321">
        <property type="entry name" value="Cyt_c_II"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01322">
        <property type="entry name" value="Cytochrom_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47175">
        <property type="entry name" value="SSF47175"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644042" evidence="1">
        <location>
            <begin position="26"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="136" mass="15169" checksum="94562696E702987D" modified="2015-11-11" version="1">MRLKKGIFAGTITLFIAAVSSVSYGQASQGELCKKMWDNFQTMRAMTGLSAASEGDFAKFSAAAKSITADTETSKSKFETDKNYNVLNDEVLYHSNEIDKAAANKDLEEIQVQFRRLTIACRNCHKIYRSELKLVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USF5</accession>
    <name>A0A0M2USF5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Glutamine synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02547</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the glutamine synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18767.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18767">
        <property type="protein sequence ID" value="KKO18767"/>
        <property type="gene ID" value="BROFUL_02547"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3162"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004356">
        <property type="term" value="F:glutamate-ammonia ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006542">
        <property type="term" value="P:glutamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008147">
        <property type="entry name" value="Gln_synt_b-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036651">
        <property type="entry name" value="Gln_synt_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008146">
        <property type="entry name" value="Gln_synth_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004809">
        <property type="entry name" value="Gln_synth_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027302">
        <property type="entry name" value="Gln_synth_N_conserv_site"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00120">
        <property type="entry name" value="Gln-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03951">
        <property type="entry name" value="Gln-synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01230">
        <property type="entry name" value="Gln-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54368">
        <property type="entry name" value="SSF54368"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="SSF55931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00653">
        <property type="entry name" value="GlnA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00180">
        <property type="entry name" value="GLNA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Gln-synt_C" evidence="4">
        <location>
            <begin position="105"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="modified residue" description="O-AMP-tyrosine" evidence="2">
        <location>
            <position position="377"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR604809-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU000384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM01230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18767.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="448" mass="51259" checksum="5817214B9A9DE5D5" modified="2015-11-11" version="1">MTSEHTDLAIISRAKDDNVKLVQLQFTDINGNIKAVTIPVERFPESIEKGIWFDGSSIEGFTRICESDMYLKPDTSTYSLLPWETEEPTARLFCDVYMPDGSPFEGDPRYILKRAIKNARAMNFEYNVGPELEFFLFKPKNNGQVEPTPHDVGSYFDFSPRDLAGNVRRDIIFTLEKMGLNVEMSHHEVAPGQHEIDFKYAEALKTAENALTFKQVVKSIAHQHDLYATFMPKPIFGMCGSGMHCHQSLFDITIKKNIFFDEKDEYKLSKVARQFVAGQLQHVRAMSAILSPTVNSYKRLVPGYEAPVYICWGQKNRSALIRIPRYSQGREQSTRAELRCPDPSNNPYLALAVMLEAGLDGIKRGLVPPNPVEENVYEFNKDELAYRNIATLPNSLGEAIEELKKNKLMETALGSHTYHVYIHAKMAEWDEYQIQVTDWEHKKYFETT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USI4</accession>
    <name>A0A0M2USI4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">50S ribosomal protein L7/L12</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rplL</name>
        <name evidence="7" type="ORF">BROFUL_02266</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer. Part of the ribosomal stalk of the 50S ribosomal subunit. Forms a multimeric L10(L12)X complex, where L10 forms an elongated spine to which 2 to 4 L12 dimers bind in a sequential fashion. Binds GTP-bound translation factors.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the bacterial ribosomal protein bL12 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000224">
        <property type="protein sequence ID" value="KKO19023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19023">
        <property type="protein sequence ID" value="KKO19023"/>
        <property type="gene ID" value="BROFUL_02266"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2828"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00387">
        <property type="entry name" value="Ribosomal_L7_L12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.710">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00368">
        <property type="entry name" value="Ribosomal_L7_L12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000206">
        <property type="entry name" value="Ribosomal_L7/12"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014719">
        <property type="entry name" value="Ribosomal_L7/12_C/ClpS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013823">
        <property type="entry name" value="Ribosomal_L7/L12_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008932">
        <property type="entry name" value="Ribosomal_L7/L12_oligo"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036235">
        <property type="entry name" value="Ribosomal_L7/L12_oligo_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45987">
        <property type="entry name" value="PTHR45987"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00542">
        <property type="entry name" value="Ribosomal_L12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16320">
        <property type="entry name" value="Ribosomal_L12_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48300">
        <property type="entry name" value="SSF48300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54736">
        <property type="entry name" value="SSF54736"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00855">
        <property type="entry name" value="L12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 7" id="KW-0689">Ribosomal protein</keyword>
    <feature type="domain" description="Ribosomal_L12_N" evidence="6">
        <location>
            <begin position="15"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="domain" description="Ribosomal_L12" evidence="5">
        <location>
            <begin position="73"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007197"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF16320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="139" mass="14244" checksum="FEF1B0A143ADA36C" modified="2015-11-11" version="1">MTQVSEEKAVEPSGKIAQVLDLVAGMSLLEASQLVKAFEQKFGVSAAAVAAVPAGASVAAEGKAAAAEEKTAFDVILKDGGANKIQVIKAVRAETNLGLKEAKDLVEGAPKTVKEGVTKEDAEKIKKSLEAAGAKVEIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USM8</accession>
    <name>A0A0M2USM8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03312</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000302">
        <property type="protein sequence ID" value="KKO18001.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18001">
        <property type="protein sequence ID" value="KKO18001"/>
        <property type="gene ID" value="BROFUL_03312"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014960">
        <property type="entry name" value="DUF1828"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014961">
        <property type="entry name" value="DUF1829"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08861">
        <property type="entry name" value="DUF1828"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08862">
        <property type="entry name" value="DUF1829"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1828" evidence="1">
        <location>
            <begin position="34"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1829" evidence="2">
        <location>
            <begin position="161"/>
            <end position="249"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08861"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18001.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="261" mass="30271" checksum="E72942431890D8BA" modified="2015-11-11" version="1">MTWIDRLIDDYYRFLRQKTVITELPSSGWIEISTPFTDVFNDTIEIYAKKSNGKIILSDDGQTLKNLELSGVEISRSQNRKEMLERILLNYGVRLEDKELLAEATESTFPQKKLNLLAAISEANDLYVLAKHTVAGLFREDVKAYLDEQGLVYTPYFLSKGSTGLEFTFDFQIAYRQTELLIKAFNTINKLNLPHFLFTWDDVKQVREKQTEKKVIGLAVINNEDREVKDEYLEALQNKGAEFILWTERNRPENIKKLKAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USR9</accession>
    <name>A0A0M2USR9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ATP-dependent DNA helicase RecG</fullName>
            <ecNumber evidence="2">3.6.1.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">recG_2</name>
        <name evidence="2" type="ORF">BROFUL_02393</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.-" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000229">
        <property type="protein sequence ID" value="KKO18892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18892">
        <property type="protein sequence ID" value="KKO18892"/>
        <property type="gene ID" value="BROFUL_02393"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="18"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="116" mass="12963" checksum="23BDCB4FC25574C5" modified="2015-11-11" version="1">MAYRLKVDYDRLCRRYQATHERGSTGRQGQKYGAEKGGEGWKGKLDGKGAEDTTQRIIEAMANKPDITQKELAAVIGITEDGVKYHIISLRKKGVIKRINPDKGRYWEIVGLGGTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USV6</accession>
    <name>A0A0M2USV6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">3-oxoacyl-(Acyl-carrier-protein) synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02171</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000214">
        <property type="protein sequence ID" value="KKO19128.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="SMR" id="A0A0M2USV6"/>
    <dbReference type="EnsemblBacteria" id="KKO19128">
        <property type="protein sequence ID" value="KKO19128"/>
        <property type="gene ID" value="BROFUL_02171"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2709"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004315">
        <property type="term" value="F:3-oxoacyl-[acyl-carrier-protein] synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00834">
        <property type="entry name" value="KAS_I_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000794">
        <property type="entry name" value="Beta-ketoacyl_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018201">
        <property type="entry name" value="Ketoacyl_synth_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014031">
        <property type="entry name" value="Ketoacyl_synth_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014030">
        <property type="entry name" value="Ketoacyl_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020841">
        <property type="entry name" value="PKS_Beta-ketoAc_synthase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11712">
        <property type="entry name" value="PTHR11712"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00109">
        <property type="entry name" value="ketoacyl-synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02801">
        <property type="entry name" value="Ketoacyl-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00825">
        <property type="entry name" value="PKS_KS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00606">
        <property type="entry name" value="B_KETOACYL_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PKS_KS" evidence="3">
        <location>
            <begin position="5"/>
            <end position="406"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19128.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="408" mass="43438" checksum="5E0DE0EA82A039DE" modified="2015-11-11" version="1">MNKRVVITGVGMITPIGSGKEGFWSNLIAGASGVDDVSCIDTSEYKVHKGCEVKNFKYSDYIKNGVLKKIGKGSQFAIAATRLALDDAGLDLGKTALERIGVSVGTTAGEIQILEKVNYIRHKDGEDKVDPDLFLMHPCNNIPANVAIEFGFKGPNTIIPTACAAGNYAIGYAYDLIKFGRVDLMVAGGSDPFSKVAYTGFARLGAIAPEICQPFDKNRKGMMVGEGAGMLLLESLDHAIQRNANIYAEIIGYGLSCDAYHITIPHPDGEGVVSAMKKALKSAHLQPGDVQYVSAHGTGTPANDKAETISIKKVFGNKPEHLAISSIKSMMGHTMGAASAIEAITCALVVQNDIIPPTINYETPDPECDLDYVPNIARKQKVTIALNNAHAFGGNNSCLVVKKFTGKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USY0</accession>
    <name>A0A0M2USY0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ABC transporter ATP-binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02345</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18952">
        <property type="protein sequence ID" value="KKO18952"/>
        <property type="gene ID" value="BROFUL_02345"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2913"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="2">
        <location>
            <begin position="1"/>
            <end position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="247" mass="27935" checksum="D80B766E56E6CB14" modified="2015-11-11" version="1">MSCRTIGVREVYLMNIVAGLEKADSGEVWANGRRIQGAGPDRVVIFQEAALFPWLNVIKNVEFGLKLKGVNGRERRNIALEYLKMVHLSKFQNSHIHELSGGMKQRVAIARALAMNPEMLLMDEPFSALDAQTRWILHYELQNIWMKTKKTILFVTHNIREAVCLADRIFILSTSPGKIKKEFAIDLPRPRDDNDVNVAEYSTRIMQELKTEIDKVVKCEMDADSCVECDIKCTSVEPAKTDIGGGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT78</accession>
    <name>A0A0M2UT78_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF362 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02019</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000206">
        <property type="protein sequence ID" value="KKO19263.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19263">
        <property type="protein sequence ID" value="KKO19263"/>
        <property type="gene ID" value="BROFUL_02019"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007160">
        <property type="entry name" value="DUF362"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019546">
        <property type="entry name" value="TAT_signal_bac_arc"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04015">
        <property type="entry name" value="DUF362"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01409">
        <property type="entry name" value="TAT_signal_seq"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF362" evidence="1">
        <location>
            <begin position="102"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19263.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="354" mass="38603" checksum="93C183B81858CF89" modified="2015-11-11" version="1">MDTKNNDLSRRNFLKHSAFGIAGLGAGIGGFEGLQWAIGSDIPSSAGKKSTVVGVKSSGIISAGKPEAENVQRMMNEGMFALTGKRTIADAWKTFFTPEDVVGIKINPIGGIKLSTRPEVVNAIIRSLIAAGVKENNIIIWDRFSYHLITAGFPLNQGNSGVRCYGTEPTAGYDKKTYYESLDDDFSLRQDDGARSLFSTIVTQHVSAIINVPVMKDHGIAGVTLCLKNLAFGAVNNTPRFHPSPYFCDPASAEVCAHPALREKVRLHIVDALQACFDGGPASMKTWTIWNEERLFLGTDPVAIDRIGLEIIDRKRKENNYPSVFQKAKHIATAGKKGLGVYDRQNIDFIELSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTH7</accession>
    <name>A0A0M2UTH7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">50S ribosomal protein L36</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rpmJ</name>
        <name evidence="6" type="ORF">BROFUL_01900</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4 5">Belongs to the bacterial ribosomal protein bL36 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19373">
        <property type="protein sequence ID" value="KKO19373"/>
        <property type="gene ID" value="BROFUL_01900"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2369"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00251">
        <property type="entry name" value="Ribosomal_L36"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000473">
        <property type="entry name" value="Ribosomal_L36"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035977">
        <property type="entry name" value="Ribosomal_L36_sp"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42888">
        <property type="entry name" value="PTHR42888"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00444">
        <property type="entry name" value="Ribosomal_L36"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57840">
        <property type="entry name" value="SSF57840"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01022">
        <property type="entry name" value="rpmJ_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00828">
        <property type="entry name" value="RIBOSOMAL_L36"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="37" mass="4389" checksum="5412AD64550D7EAE" modified="2015-11-11" version="1">MKVKASVKRICENCKIVRRQNVIRVICVNPRHKQRQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTM5</accession>
    <name>A0A0M2UTM5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Precorrin-2 C20-methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_01885</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the precorrin methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000194">
        <property type="protein sequence ID" value="KKO19423.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19423">
        <property type="protein sequence ID" value="KKO19423"/>
        <property type="gene ID" value="BROFUL_01885"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030788">
        <property type="term" value="F:precorrin-2 C20-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd11645">
        <property type="entry name" value="Precorrin_2_C20_MT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014776">
        <property type="entry name" value="4pyrrole_Mease_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012382">
        <property type="entry name" value="CobI/CbiL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006364">
        <property type="entry name" value="CobI/CbiL/CobIJ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003043">
        <property type="entry name" value="Uropor_MeTrfase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036427">
        <property type="entry name" value="Precrrn-2_mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="SSF53790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01467">
        <property type="entry name" value="cobI_cbiL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00839">
        <property type="entry name" value="SUMT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="4 9" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="5 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TP_methylase" evidence="8">
        <location>
            <begin position="6"/>
            <end position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRNR" id="PIRNR036427"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19423.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="244" mass="27029" checksum="BEEDE987E7163CC6" modified="2015-11-11" version="1">MKPGNFYGIGLGPGDPELLTIKAIRAIQGANRIFVPRSDTKEESLALEIVKDYVKEKKVIEQVYPMTKDKSVLNAAWLTAAEEVCTEVRNGHNIAYLTLGDPMTFSTYIYLLRHLNAMLPEHVIHTIPGITSYNAAACMANYPLLTGDERLAVIPVPKDITTLRPILETFDTVVLMKVAKKLDEVIQLIEEMNLAEHALFASYIGQKDAYLTCDIVSLKGSGRGYMSVLIVKRKDALVKGFATI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTN8</accession>
    <name>A0A0M2UTN8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02950</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000278">
        <property type="protein sequence ID" value="KKO18351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18351">
        <property type="protein sequence ID" value="KKO18351"/>
        <property type="gene ID" value="BROFUL_02950"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="119"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="144" mass="16517" checksum="FCB4DCB02C3CD171" modified="2015-11-11" version="1">MFLRWTCLFVSVHLLLSQNRRLCSSKTLIILESGKVVDVCPKAIPWFFDLFLPYGDPNQNNNALFHSCIYYTHINRLIIEHTLSCPFSASILEKESIRRINTIMRPLITPRITRHCRTMHGESPPSADVSRNPYLSDRPGTTGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTR3</accession>
    <name>A0A0M2UTR3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02294</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO19000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19000">
        <property type="protein sequence ID" value="KKO19000"/>
        <property type="gene ID" value="BROFUL_02294"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006158">
        <property type="entry name" value="Cobalamin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025274">
        <property type="entry name" value="DUF4070"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034466">
        <property type="entry name" value="Methyltransferase_Class_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02310">
        <property type="entry name" value="B12-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13282">
        <property type="entry name" value="DUF4070"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01123">
        <property type="entry name" value="methyltransferase_(Class_B)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="B12-binding" evidence="2">
        <location>
            <begin position="4"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="3">
        <location>
            <begin position="176"/>
            <end position="412"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="467" mass="53502" checksum="37986ED237DED70A" modified="2015-11-11" version="1">MKQNGKINIHGPNLCQKMEDNMKLLLVSPLASKSFLGGDFYFRLPYLGLLKVASLTPPNWDVSIIDEKVESLDLTQGADLVGITAMTPAVNRAYEIADSFRSRGIKVIMGGMHVSKMPDEALRHCDSVIIGEAERLWDKALNDCKRDELKSIYRHDNEYPSLANFPAPNWKLYEGKRYLPVHFLETTRGCPHNCEFCSVTNSFGGKFRNRPVDEVEREIQDLKPFEGRFVLKNVVFFVDDNIISNRKHTKELLSRIIPYNLKWTGQASVNIAKNNEILELCKKSGCMGLVVGFESLSQGNLANMGKTFNTPDTYIDVVKKLHDYGIGVTGAFVFGFDHDDESVFDRTIEFVIKAKIDVCYFSILTPYPGTRVYSQMLQEGRIIDHDWSNYNTNHVVFKPKLMKPEKLLDGFHHALKESFSYTAIFKRLWGNGTYKNFFYPMNFGFRQTVRKTIKNKQHFSYEEDPDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU06</accession>
    <name>A0A0M2UU06_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">S1 motif domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02199</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000220">
        <property type="protein sequence ID" value="KKO19085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19085">
        <property type="protein sequence ID" value="KKO19085"/>
        <property type="gene ID" value="BROFUL_02199"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2745"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006139">
        <property type="term" value="P:nucleobase-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05685">
        <property type="entry name" value="S1_Tex"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.650">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3500.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041692">
        <property type="entry name" value="HHH_9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010994">
        <property type="entry name" value="RuvA_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022967">
        <property type="entry name" value="S1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003029">
        <property type="entry name" value="S1_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044146">
        <property type="entry name" value="S1_Tex"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023323">
        <property type="entry name" value="Tex-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023319">
        <property type="entry name" value="Tex-like_HTH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018974">
        <property type="entry name" value="Tex-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032639">
        <property type="entry name" value="Tex_YqgF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006641">
        <property type="entry name" value="YqgF/RNaseH-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037027">
        <property type="entry name" value="YqgF/RNaseH-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17674">
        <property type="entry name" value="HHH_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00575">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09371">
        <property type="entry name" value="Tex_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16921">
        <property type="entry name" value="Tex_YqgF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00732">
        <property type="entry name" value="YqgFc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47781">
        <property type="entry name" value="SSF47781"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50126">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S1 motif" evidence="1">
        <location>
            <begin position="639"/>
            <end position="708"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="711" mass="78791" checksum="9AEAD360AA5F51AC" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU25</accession>
    <name>A0A0M2UU25_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Endonuclease V</fullName>
            <ecNumber evidence="1">3.1.21.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Deoxyinosine 3'endonuclease</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Deoxyribonuclease V</fullName>
            <shortName evidence="1">DNase V</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">nfi</name>
        <name evidence="2" type="ORF">BROFUL_03351</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Endonucleolytic cleavage at apurinic or apyrimidinic sites to products with a 5'-phosphate.</text>
            <dbReference type="EC" id="3.1.21.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the endonuclease V family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.21.7" evidence="1"/>
    <dbReference type="EMBL" id="LAQJ01000306">
        <property type="protein sequence ID" value="KKO17979.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17979">
        <property type="protein sequence ID" value="KKO17979"/>
        <property type="gene ID" value="BROFUL_03351"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4124"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043737">
        <property type="term" value="F:deoxyribonuclease V activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06559">
        <property type="entry name" value="Endonuclease_V"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00801">
        <property type="entry name" value="Endonuclease_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007581">
        <property type="entry name" value="Endonuclease-V"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28511">
        <property type="entry name" value="PTHR28511"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04493">
        <property type="entry name" value="Endonuclease_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="1">
        <location>
            <position position="47"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="116"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="site" description="Interaction with target DNA" evidence="1">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO17979.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="231" mass="25885" checksum="F772BE52FAEC34AE" modified="2015-11-11" version="1">MHKRNEIQPVAFMAPRYKKAIEVQKVLREQLILKRVAGKISTVAGADVSYDKHGDSFFAGVVVYKLGKQLEKIEEATAHGRIRFPYIPGLLSFREAPILLKAFKKLKNDPDVILFDGQGIAHPRHFGLASHMGLILDRRAIGCAKSRLVGEFRCVKNVVGAYSKLFYQHEAVGAVLRTKVNTNPIFVSPGHKVNLALAIHIALATCRGYRIPEPVRHAHLLVNRVRKEQIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU27</accession>
    <name>A0A0M2UU27_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptidoglycan lytic exotransglycosylase</fullName>
            <ecNumber evidence="2">4.2.2.n1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Murein hydrolase A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">mltA</name>
        <name evidence="8" type="ORF">BROFUL_02820</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Exolytic cleavage of the (1-&gt;4)-beta-glycosidic linkage between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc) residues in peptidoglycan, from either the reducing or the non-reducing ends of the peptidoglycan chains, with concomitant formation of a 1,6-anhydrobond in the MurNAc residue.</text>
            <dbReference type="EC" id="4.2.2.n1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.2.n1" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000265">
        <property type="protein sequence ID" value="KKO18496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18496">
        <property type="protein sequence ID" value="KKO18496"/>
        <property type="gene ID" value="BROFUL_02820"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3487"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019867">
        <property type="term" value="C:outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009254">
        <property type="term" value="P:peptidoglycan turnover"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd14485">
        <property type="entry name" value="mltA_like_LT_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010611">
        <property type="entry name" value="3D_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026044">
        <property type="entry name" value="MltA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034654">
        <property type="entry name" value="MltA_3D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005300">
        <property type="entry name" value="MltA_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036908">
        <property type="entry name" value="RlpA-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30124">
        <property type="entry name" value="PTHR30124"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06725">
        <property type="entry name" value="3D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03562">
        <property type="entry name" value="MltA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF019422">
        <property type="entry name" value="MltA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00925">
        <property type="entry name" value="MltA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50685">
        <property type="entry name" value="SSF50685"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="8" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="domain" description="MltA" evidence="7">
        <location>
            <begin position="148"/>
            <end position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001420"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00030918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00925"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="386" mass="43988" checksum="5D33965AB387B41F" modified="2015-11-11" version="1">MRLKRDVHPVFLPAVMLIILMLMGSGCAMFKKKTLLVPREAGDTLVEITDPTQLPQFRDDYSRDSLLQSIDHSLDYFKRVKANPYGFHMDGFSHENLEDSLKFFREGFLRCRDTAEINDFIVKNFRVFQAIGKAYEGQVHFTGYGTPIYDGSLTPTGEFRYPLYKIPPDFRKPYYTRSEIEDRNLLKGLEIAYLKSKLDAYLIHVQGSGQIRLASGEKVYVGYGADSGHKYSSIGRMLVMDGKIPEEELTLSTLIAYFNQHPGELDSYLRKNDRYIFFKRVNYATPYGSIGVPVTPMRSIATDKKVFPAGGLAFAVIEPKKAKKTWKFWEKGTSGTEKSFFVLDQDTGSAIQTPARADVYFGIGDQAMYEAGSLNTYGRLYYFLKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU44</accession>
    <name>A0A0M2UU44_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ATP-dependent DNA helicase RecG</fullName>
            <ecNumber evidence="3">3.6.1.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">recG_3</name>
        <name evidence="3" type="ORF">BROFUL_03315</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.-" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000302">
        <property type="protein sequence ID" value="KKO18004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18004">
        <property type="protein sequence ID" value="KKO18004"/>
        <property type="gene ID" value="BROFUL_03315"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4084"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.950.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025831">
        <property type="entry name" value="RecG_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038475">
        <property type="entry name" value="RecG_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007421">
        <property type="entry name" value="Schlafen_AlbA_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038461">
        <property type="entry name" value="Schlafen_AlbA_2_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04326">
        <property type="entry name" value="AlbA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13749">
        <property type="entry name" value="HATPase_c_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0347">Helicase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AlbA_2" evidence="1">
        <location>
            <begin position="14"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="domain" description="HATPase_c_4" evidence="2">
        <location>
            <begin position="298"/>
            <end position="367"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="385" mass="43341" checksum="F11711AE076AD624" modified="2015-11-11" version="1">MEPTELLEIVGRDEDSNNQFKANFHNVDSLAAEMVAFSNSGGGRIFIGITNDGRITGLTRPDMGRLNQLVSNAASQSVRPPINPQTENVSLPDGLVMVVTIQKGISKPYMDNTGAIWVKSGSDKRRVTSREEIQRMYQNAGLIHGDEVPANGMTIGDLDMDYFRSFFKKQYGESLEEQNLPLNTILENMNLLKDGVLKVAGALLFARRQEFYLPAFCVKCVTYPGDDIHASEYRDSEDITGKLEEVFNRSLGFITRNLRHIQYDQNVNSPGRLEIPKITLEELLTNALVHRDYFVLAPVRIFIFNNRIEIISPGHLPNNLTIENIKKGNSNIRNPILTSFATKILPYRGLGNGIRRAIKEYSDIEFEDDQAGNAFRVIIRRSSDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU48</accession>
    <name>A0A0M2UU48_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative amidohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02182</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000215">
        <property type="protein sequence ID" value="KKO19110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19110">
        <property type="protein sequence ID" value="KKO19110"/>
        <property type="gene ID" value="BROFUL_02182"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016810">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01979">
        <property type="entry name" value="Amidohydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51338">
        <property type="entry name" value="SSF51338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="1">
        <location>
            <begin position="54"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="245" mass="27247" checksum="321087380DA09FA8" modified="2015-11-11" version="1">MKMIRAKYLIPEPERCIENGAVAVEDARIHRVGTFDEIKTLPDVDAIIDLGNAVILPGLINIHTHLDLTHLHNRIKPTSNFTHWVFQLLGARIRWKEADYTASIEKGIRCSVEAGTTTVADIANTEYSFSVLRKSPLRKVVFKEVIDLNPDHAEDVLAKAQSELAGFGYDGAVPVGINDPPVSPGKPGMMRVRSAAGMICFVWGFHPMHPIPCRRNCIGWLLNLPVRKACRSARTLLRHGMKLNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUA0</accession>
    <name>A0A0M2UUA0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01653</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19618">
        <property type="protein sequence ID" value="KKO19618"/>
        <property type="gene ID" value="BROFUL_01653"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.1140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003795">
        <property type="entry name" value="DUF192"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038695">
        <property type="entry name" value="Saro_0823-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37953">
        <property type="entry name" value="PTHR37953"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02643">
        <property type="entry name" value="DUF192"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="160" mass="18223" checksum="9B60D9F93EBC9896" modified="2015-11-11" version="1">MDRDKKYVWFSLSVLFICAGICAGVRDVCGEALKRNKVLPINVAGIELEIELATTSEEQILGLMYRDTLDDDGGMLFVFPKEKHVSFWMKNTRIPLSIAFIKADGRIMQIESMKPYSLDSHVSREKVKYALEMKDGWFQARKVKEGDIVRIPQAFDGKGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUA7</accession>
    <name>A0A0M2UUA7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02729</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000253">
        <property type="protein sequence ID" value="KKO18581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18581">
        <property type="protein sequence ID" value="KKO18581"/>
        <property type="gene ID" value="BROFUL_02729"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="183" mass="19889" checksum="E26484B18C6175F4" modified="2015-11-11" version="1">MEQTKFNKSFFDSVETIRIKDPLAITLGAMDKNEAFVFTYTDAVKFAGHSCPAVSGAYKLTLLALKSLYGSEVPVRGQIKVTFKGGIDYKVNGPISQVVTLITGAAGESGFKGLGGGRYNRHNLLSFNETQQAKEDAVCTVVFERMDNNKKIEISYSNYMLPANPKMGDLMPLAVTGKGSDAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUC4</accession>
    <name>A0A0M2UUC4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01640</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000172">
        <property type="protein sequence ID" value="KKO19643.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19643">
        <property type="protein sequence ID" value="KKO19643"/>
        <property type="gene ID" value="BROFUL_01640"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="52"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="69"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19643.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="102" mass="11525" checksum="ABBCEB49C3590343" modified="2015-11-11" version="1">MVNRKSTSHFYKKCVFVQTLDKRGECKNQHAEKEHPVSAVNVRKGACRQFEEDAGYGRSANDKPDGLWTCSQRQRKERQKGGSCHGITHPGKKAHGTEGNKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUI3</accession>
    <name>A0A0M2UUI3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Mrr restriction system protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">mrr</name>
        <name evidence="2" type="ORF">BROFUL_01574</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000165">
        <property type="protein sequence ID" value="KKO19713.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19713">
        <property type="protein sequence ID" value="KKO19713"/>
        <property type="gene ID" value="BROFUL_01574"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007560">
        <property type="entry name" value="Restrct_endonuc_IV_Mrr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011856">
        <property type="entry name" value="tRNA_endonuc-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04471">
        <property type="entry name" value="Mrr_cat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mrr_cat" evidence="1">
        <location>
            <begin position="184"/>
            <end position="300"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19713.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="312" mass="36103" checksum="2E5D1C543E344FCC" modified="2015-11-11" version="1">MNVENLGGIRPSVDANKNLNHLVILTTTEQYAKNIAENPYHDRIENNILIYTAQGRTGDQEISGRNKRIIEQYSAPIPFYGFSNEGRQKYTFPGLLELLRHFQEYQIDKKNILRKVWVFEFYIHDEIPTVPIQNAKDLIVAIFKESRKIREIEREEREVILSEVQQKVYETANCETEEIRSYLLRINPYRFEFLVKDVVASNGFINVTVTTPSQDGGIDVNGYVAESNYFFSRTHVQFQVKRWRHSVGSVEINNFRGALHTTAKGIFVTTSHFTKAAMQEAEHSVKPCISLIDGFRFSKLIKDTGININKYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUS0</accession>
    <name>A0A0M2UUS0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative peptidoglycan binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01515</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000155">
        <property type="protein sequence ID" value="KKO19788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19788">
        <property type="protein sequence ID" value="KKO19788"/>
        <property type="gene ID" value="BROFUL_01515"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1873"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.101.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018003">
        <property type="entry name" value="Insecticidal_toxin/plasmid_vir"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041079">
        <property type="entry name" value="Neuraminidase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011658">
        <property type="entry name" value="PA14_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002477">
        <property type="entry name" value="Peptidoglycan-bd-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036365">
        <property type="entry name" value="PGBD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036366">
        <property type="entry name" value="PGBDSf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18413">
        <property type="entry name" value="Neuraminidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07691">
        <property type="entry name" value="PA14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01471">
        <property type="entry name" value="PG_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03538">
        <property type="entry name" value="VRP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00758">
        <property type="entry name" value="PA14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47090">
        <property type="entry name" value="SSF47090"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0843">Virulence</keyword>
    <feature type="domain" description="PA14" evidence="2">
        <location>
            <begin position="1544"/>
            <end position="1682"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00758"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="2423" mass="271358" checksum="C7B033CDA9DA6F80" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUZ6</accession>
    <name>A0A0M2UUZ6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PLDc_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01657</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19622.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19622">
        <property type="protein sequence ID" value="KKO19622"/>
        <property type="gene ID" value="BROFUL_01657"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025202">
        <property type="entry name" value="PLD-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13091">
        <property type="entry name" value="PLDc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PLDc_2" evidence="1">
        <location>
            <begin position="41"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19622.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="362" mass="41190" checksum="32505349DC558A74" modified="2015-11-11" version="1">MNLKKLYWMTIIATWGSFFYPHERAFSSDVYFANREIKKQIVSAIEGCRDSIDIAVSDITAHDFLAALVKAQKRGVTIRMVVGKKPAFMKESLPAIDKDGKVVIKVLSQKGRRQNNFVIFDSQLLAIGSYPWRKNASNYNRYDLIITDETKLVVKYQREFDRLFQEERTASGGVNAVIEEKKKEKPADTDTSDIIPKGMDAINQTVAPNYKALLPETPDGLIAMSFEDFDKVFGIASELSDEQKERLWSRCEGKRVKWNGKVAYLGWGLITGWMMNVKYEDTGVEVKLSSAHKDHFSQVKFGNTVTYTGKLTARVTRIFPYKLEDGDVLHIENTRPQPVSDSELVEDPYTVPVSQGPKKYSW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV03</accession>
    <name>A0A0M2UV03_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative deaminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02976</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000281">
        <property type="protein sequence ID" value="KKO18319.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18319">
        <property type="protein sequence ID" value="KKO18319"/>
        <property type="gene ID" value="BROFUL_02976"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3681"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002125">
        <property type="entry name" value="CMP_dCMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016193">
        <property type="entry name" value="Cytidine_deaminase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00383">
        <property type="entry name" value="dCMP_cyt_deam_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53927">
        <property type="entry name" value="SSF53927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51747">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CMP/dCMP-type deaminase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18319.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="155" mass="17326" checksum="6902F8EBD504C429" modified="2015-11-11" version="1">MDEKFMRLAIAKAKQGIEKGQTPFGACIAKDGEVVCCVHNIVWERLDITAHAEIHAIREACKQLNTVDLSGCVMYATCEPCPMCFSACHWAGISKIVYGARIDDAKTLGFSELTISNREMKQFGNSPVAIVSDCLRNENLALFDFWNQRADKRTY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV18</accession>
    <name>A0A0M2UV18_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NTP_transf_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02970</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000280">
        <property type="protein sequence ID" value="KKO18334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18334">
        <property type="protein sequence ID" value="KKO18334"/>
        <property type="gene ID" value="BROFUL_02970"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002934">
        <property type="entry name" value="Polymerase_NTP_transf_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01909">
        <property type="entry name" value="NTP_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NTP_transf_2" evidence="1">
        <location>
            <begin position="16"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="106" mass="12295" checksum="2FEABA55904D018E" modified="2015-11-11" version="1">MGRICHIELPKDKIADFCRKWKIREFSIFGSVLREDFHPDSDIDVLVTLSEEAKNTLFDLVHMKEELEQILGRGVDLVSRRGIESSRNYIRKEAILGTAETVYAER</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV29</accession>
    <name>A0A0M2UV29_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01383</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000142">
        <property type="protein sequence ID" value="KKO19908.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19908">
        <property type="protein sequence ID" value="KKO19908"/>
        <property type="gene ID" value="BROFUL_01383"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19908.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="62" mass="7450" checksum="585B338DE563B94D" modified="2015-11-11" version="1">MKDLKNRLDLLELDLKKLEKKFKEEGLAGTPEEWHHVLHMVRKIEEFAIAQLAIRKYLEEHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV33</accession>
    <name>A0A0M2UV33_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">1,4-alpha-glucan branching enzyme GlgB</fullName>
            <ecNumber evidence="9">2.4.1.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">Alpha-(1-&gt;4)-glucan branching enzyme</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">Glycogen branching enzyme</fullName>
            <shortName evidence="9">BE</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">glgB</name>
        <name evidence="12" type="ORF">BROFUL_02953</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>Transfers a segment of a (1-&gt;4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.</text>
            <dbReference type="EC" id="2.4.1.18"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 9">Glycan biosynthesis; glycogen biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.18" evidence="9"/>
    <dbReference type="EMBL" id="LAQJ01000278">
        <property type="protein sequence ID" value="KKO18354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18354">
        <property type="protein sequence ID" value="KKO18354"/>
        <property type="gene ID" value="BROFUL_02953"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3657"/>
    <dbReference type="UniPathway" id="UPA00164"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003844">
        <property type="term" value="F:1,4-alpha-glucan branching enzyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102752">
        <property type="term" value="F:1,4-alpha-glucan branching enzyme activity (using a glucosylated glycogenin as primer for glycogen synthesis)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043169">
        <property type="term" value="F:cation binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005978">
        <property type="term" value="P:glycogen biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02855">
        <property type="entry name" value="E_set_GBE_prok_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00685">
        <property type="entry name" value="GlgB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006048">
        <property type="entry name" value="A-amylase/branching_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037439">
        <property type="entry name" value="Branching_enzy"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006407">
        <property type="entry name" value="GlgB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044143">
        <property type="entry name" value="GlgB_N_E_set_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006047">
        <property type="entry name" value="Glyco_hydro_13_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004193">
        <property type="entry name" value="Glyco_hydro_13_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43651">
        <property type="entry name" value="PTHR43651"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00128">
        <property type="entry name" value="Alpha-amylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02806">
        <property type="entry name" value="Alpha-amylase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02922">
        <property type="entry name" value="CBM_48"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000463">
        <property type="entry name" value="GlgB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00642">
        <property type="entry name" value="Aamy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01515">
        <property type="entry name" value="branching_enzym"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="7 9" id="KW-0320">Glycogen biosynthesis</keyword>
    <keyword evidence="4 9" id="KW-0321">Glycogen metabolism</keyword>
    <keyword evidence="5 9" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aamy" evidence="11">
        <location>
            <begin position="154"/>
            <end position="525"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="9 10">
        <location>
            <position position="313"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="9 10">
        <location>
            <position position="366"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009000"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022600"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR000463-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO18354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="637" mass="73881" checksum="2383855D4CD0D0C5" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV73</accession>
    <name>A0A0M2UV73_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01573</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000165">
        <property type="protein sequence ID" value="KKO19712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19712">
        <property type="protein sequence ID" value="KKO19712"/>
        <property type="gene ID" value="BROFUL_01573"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="137" mass="15828" checksum="9BA74F10720759FB" modified="2015-11-11" version="1">MGLLPYSPPFLYGLVSCIKTIFYHIWRAFSLTKSLFFYSTKNLRTAATRSFQIASIFSPSSFGLHSLTSLSPNEYTGEFLPEISRLFNNYSVRLEIANRIMKRHSGMEFGCDIEKDRIRTWVTERMVIAQPPSRSEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV84</accession>
    <name>A0A0M2UV84_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Radical SAM core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01316</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000138">
        <property type="protein sequence ID" value="KKO19968.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19968">
        <property type="protein sequence ID" value="KKO19968"/>
        <property type="gene ID" value="BROFUL_01316"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1628"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="5">
        <location>
            <begin position="16"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19968.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="117" mass="12926" checksum="9FA53FE31FC0BEC0" modified="2015-11-11" version="1">MKINEIFKSIQGETSYAGLPCIFIRITGCNLRCSYCDTTYAYEEGTEMPIGSILERVAGFNIKLVCVTGGEPLSDKDTPSLIEELLGKNYTVLVETNGSYDIRMIPQGAIKIMDIKC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVE5</accession>
    <name>A0A0M2UVE5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01493</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000153">
        <property type="protein sequence ID" value="KKO19797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19797">
        <property type="protein sequence ID" value="KKO19797"/>
        <property type="gene ID" value="BROFUL_01493"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644041" evidence="1">
        <location>
            <begin position="22"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="88" mass="10329" checksum="5FD6A43C19487990" modified="2015-11-11" version="1">MKKYFIALAFMLTAFSFLEFKAIAQEARFFDVFGEITYGEECLQSWQMEEASAVAEKLLLIGRNNPYVCFLPARCVFMRAIIRNRYHI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVG9</accession>
    <name>A0A0M2UVG9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02275</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO18981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18981">
        <property type="protein sequence ID" value="KKO18981"/>
        <property type="gene ID" value="BROFUL_02275"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="255"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="6"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="346" mass="38541" checksum="AFDE4C4BE1B073D7" modified="2015-11-11" version="1">MPSDVCVVIPAYNASSTIGNIVIGALKHVSKVIVADDGSTDNTAVAASGAGAEIVIIDRNRGKGNALTVLFQKTVDEGYDAVISMDADEQHDPEEIPKFLAAHIMHPDDIISGSRMGEKEKIPRARYNSMCIARYYISLAANQFIEDTQCGFRLYPLSIIKKIRLKTERFVTETELLMKAGDMGADIRFVSIKTIYNENGTHFKPVKDIVAITAYVISYIYVKWLIEGITSNNSNTYLTQNHLRDLIGKNKTVDIFFQIFTVFTALPATVFFLLEYQFLGLFIPNNFASIRERGCGFSKITLSTQTLPVLFIVAGIEKIMNVTGSKVNILDGFIKRFFSNSWKDTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVL5</accession>
    <name>A0A0M2UVL5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">TGc domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01395</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000145">
        <property type="protein sequence ID" value="KKO19882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19882">
        <property type="protein sequence ID" value="KKO19882"/>
        <property type="gene ID" value="BROFUL_01395"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002931">
        <property type="entry name" value="Transglutaminase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01841">
        <property type="entry name" value="Transglut_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TGc" evidence="1">
        <location>
            <begin position="81"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01841"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="282" mass="32612" checksum="EF734BADCCEB51BA" modified="2015-11-11" version="1">MVMLILPTGCHSTQKQGLSAQGNNHNLEALLMNDIQDGRLDMPFDQACLIASGVDTGKRMNTYLKKIELLISRIRQETEINTTGDPLKKADIIFDWLQSNANDGTYSDCYDFRDTLNLKVGNCLSYAIRFTIVSREFGIDIKNIFIPGHIYNRLVFEGQTRYFEHTHSDGIVKKKDLYNSQKKVMKDEELVAEIFLYKARNANNDLKYAESSKRCEQALLFNPDDSRPVILLLDNYIAQKNYREAFRYLSHYLDQHPNDRISFNNTYILLQRLCAKEDAKTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVN5</accession>
    <name>A0A0M2UVN5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Rubrerythrin domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01183</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000126">
        <property type="protein sequence ID" value="KKO20108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20108">
        <property type="protein sequence ID" value="KKO20108"/>
        <property type="gene ID" value="BROFUL_01183"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012347">
        <property type="entry name" value="Ferritin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003251">
        <property type="entry name" value="Rubrerythrin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02915">
        <property type="entry name" value="Rubrerythrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rubrerythrin" evidence="1">
        <location>
            <begin position="8"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="161" mass="18809" checksum="F9FE211A544DCC6A" modified="2015-11-11" version="1">MPYETKSILETAISEEIKASRFYSSLALQMEEKGVRLKFEDMAAVEMSHYELLFSYYEKKYHQRPVVQETGKLKIVRPETPPKTASFADAIKIIMDTEFKAYAFYQKAAASATDGKEQEMFAMLARVEQSHYEYFRTEYHYATEATIRFASEDIPWMMEVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVU7</accession>
    <name>A0A0M2UVU7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 7">ATP-dependent Clp protease proteolytic subunit</fullName>
            <ecNumber evidence="5">3.4.21.92</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Endopeptidase Clp</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5 8" type="primary">clpP</name>
        <name evidence="8" type="ORF">BROFUL_02676</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Fourteen ClpP subunits assemble into 2 heptameric rings which stack back to back to give a disk-like structure with a central cavity, resembling the structure of eukaryotic proteasomes.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 7">Belongs to the peptidase S14 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.92" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000246">
        <property type="protein sequence ID" value="KKO18619.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18619">
        <property type="protein sequence ID" value="KKO18619"/>
        <property type="gene ID" value="BROFUL_02676"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3316"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07017">
        <property type="entry name" value="S14_ClpP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00444">
        <property type="entry name" value="ClpP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001907">
        <property type="entry name" value="ClpP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023562">
        <property type="entry name" value="ClpP/TepA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033135">
        <property type="entry name" value="ClpP_His_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10381">
        <property type="entry name" value="PTHR10381"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00574">
        <property type="entry name" value="CLP_protease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00127">
        <property type="entry name" value="CLPPROTEASEP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00382">
        <property type="entry name" value="CLP_PROTEASE_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 5 8" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0720">Serine protease</keyword>
    <feature type="active site" description="Nucleophile" evidence="5">
        <location>
            <position position="122"/>
        </location>
    </feature>
    <feature type="active site" evidence="5 6">
        <location>
            <position position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00444"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10086"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003567"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18619.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="222" mass="24991" checksum="7FA0F05E480D5F59" modified="2015-11-11" version="1">MYKEFLSYLESGEFPFEKPKGSYGSLFVPYVVEKTGFGERHYDIFSRLLKDRIIFIGSAIEDTLANLVIAQILFLQNENKNQDINIYINSPGGSITSGLAIYDTMQFVQCDVATYCIGQAYSMAAILLAGGTKGKRFGLPHTRIMLHQPWGGMRGTATDISIQAEEILRMKKCLNGILVKHTGQPLERVELDVDRDFYMSSHEAKAYGLVDEVIESLRDKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVV2</accession>
    <name>A0A0M2UVV2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01307</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000137">
        <property type="protein sequence ID" value="KKO19977.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19977">
        <property type="protein sequence ID" value="KKO19977"/>
        <property type="gene ID" value="BROFUL_01307"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19977.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="73" mass="8650" checksum="654DD2360E1C553C" modified="2015-11-11" version="1">MPEIIADHVSVVETSELKRFSRVGAKYYHPINSKHILEQHPGYENFERTDEQNWNLQREARVFKYFAGSIILD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW00</accession>
    <name>A0A0M2UW00_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01089</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20238.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20238">
        <property type="protein sequence ID" value="KKO20238"/>
        <property type="gene ID" value="BROFUL_01089"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025634">
        <property type="entry name" value="DUF4292"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029046">
        <property type="entry name" value="LolA/LolB/LppX"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14125">
        <property type="entry name" value="DUF4292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89392">
        <property type="entry name" value="SSF89392"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20238.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="191" mass="21746" checksum="18926B9C55497B13" modified="2015-11-11" version="1">MILYQSPRNLRAMGAKFATTLFDMSSDGNRFWLYIPSENLAYTGESNTFHKIEALGISIFPGDMASLFNYREIVQGQRPTLETWPAYWLLHMLDVEKEEVNLKGNLLVDRVNAEVIRCELFNPDGSVRLQALFTDYTTQNDCRIPRKIDVRWPAHNTTLSITFSDIVVNGALDPKLFTLSIPEGAQIITLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW48</accession>
    <name>A0A0M2UW48_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Wall-associated protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">wapA</name>
        <name evidence="1" type="ORF">BROFUL_02100</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000210">
        <property type="protein sequence ID" value="KKO19191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19191">
        <property type="protein sequence ID" value="KKO19191"/>
        <property type="gene ID" value="BROFUL_02100"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2620"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001826">
        <property type="entry name" value="RHS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022385">
        <property type="entry name" value="Rhs_assc_core"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00394">
        <property type="entry name" value="RHSPROTEIN"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03696">
        <property type="entry name" value="Rhs_assc_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="637" mass="69159" checksum="84513911B68C1751" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW51</accession>
    <name>A0A0M2UW51_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Transporter protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_01002</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000118">
        <property type="protein sequence ID" value="KKO20293.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20293">
        <property type="protein sequence ID" value="KKO20293"/>
        <property type="gene ID" value="BROFUL_01002"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1257"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004752">
        <property type="entry name" value="AmpG_permease/AT-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12778">
        <property type="entry name" value="PTHR12778"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="44"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="82"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="107"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="149"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="173"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="226"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="261"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="289"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="316"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="352"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="379"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="13"/>
            <end position="404"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20293.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="426" mass="46062" checksum="14B6AD0197AB3B08" modified="2015-11-11" version="1">MQDAVVRIIFSWRMLVTFFLGVSSGIPLLVTGSTLQAWMTDEKVDLAVIGLFSLVGLPYTVKFLWAPVMDRYLPPFLGKRRGWMLIAQILLMLAIGAFSLVKPAQSPWIVALLAALVSFFSASQDIVVDAYRRELLPDEELGLGSSLAVNGYRVGMLISGAFALFLADHIPWHYVYLLLAISLLTGIITTCLAPDAAGRVIPPKSLREAVAGPFLDYFKRAGAWEILAFILLYKMGDLMAGSMTTPFILKMGFTKTELAAVVKTFGILATIAGGLVGGVILIRLGLCKGLLIFGILQAVSTLSFSALASLGAYSSALAATIAFENLTGGMGTAAFTAFMASLCNKKFTATQYALLSSLMGIPRVIVAAPTGFLAERLGWVQFFIFCTLAAIPGLAFLFRYRVWQAGVDFLHRTNTSQKDNEFLAES</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW56</accession>
    <name>A0A0M2UW56_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01203</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000128">
        <property type="protein sequence ID" value="KKO20077.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20077">
        <property type="protein sequence ID" value="KKO20077"/>
        <property type="gene ID" value="BROFUL_01203"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20077.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="65" mass="7422" checksum="04398564B37A17E1" modified="2015-11-11" version="1">MEERSFPNGDASFVLLYYTIDIVRVNDCSTSLMQRNTVWQHFSLLVQSQKPSGGGKMFLTGHKVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW81</accession>
    <name>A0A0M2UW81_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="14">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">BROFUL_02539</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the cytochrome ubiquinol oxidase subunit 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18759">
        <property type="protein sequence ID" value="KKO18759"/>
        <property type="gene ID" value="BROFUL_02539"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3152"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070069">
        <property type="term" value="C:cytochrome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019646">
        <property type="term" value="P:aerobic electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002585">
        <property type="entry name" value="Cyt-d_ubiquinol_oxidase_su_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30365">
        <property type="entry name" value="PTHR30365"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01654">
        <property type="entry name" value="Cyt_bd_oxida_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0249">Electron transport</keyword>
    <keyword evidence="5" id="KW-0349">Heme</keyword>
    <keyword evidence="10" id="KW-0408">Iron</keyword>
    <keyword evidence="11 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 13" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="116"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="159"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="194"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="226"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="286"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="319"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="362"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="400"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="441"/>
            <end position="466"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="486"/>
            <end position="504"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="524"/>
            <end position="541"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="550"/>
            <end position="569"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="581"/>
            <end position="604"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="625"/>
            <end position="644"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="672"/>
            <end position="695"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="65"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="KKO18759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="721" mass="80484" checksum="F923802282795CDB" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW97</accession>
    <name>A0A0M2UW97_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Ketol-acid reductoisomerase (NADP(+))</fullName>
            <shortName evidence="8">KARI</shortName>
            <ecNumber evidence="8">1.1.1.86</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Acetohydroxy-acid isomeroreductase</fullName>
            <shortName evidence="8">AHIR</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Alpha-keto-beta-hydroxylacyl reductoisomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">ilvC</name>
        <name evidence="12" type="ORF">BROFUL_02041</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>(2R)-2,3-dihydroxy-3-methylbutanoate + NADP(+) = (2S)-2-acetolactate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:22068"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:49072"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:58476"/>
            <dbReference type="EC" id="1.1.1.86"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>(2R,3R)-2,3-dihydroxy-3-methylpentanoate + NADP(+) = (S)-2-ethyl-2-hydroxy-3-oxobutanoate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:13493"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:49256"/>
            <dbReference type="ChEBI" id="CHEBI:49258"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.86"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="8">Binds 2 magnesium ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 2/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 8">Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 2/4.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8 9">Belongs to the ketol-acid reductoisomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.86" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19241.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19241">
        <property type="protein sequence ID" value="KKO19241"/>
        <property type="gene ID" value="BROFUL_02041"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2544"/>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00056"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00049">
        <property type="reaction ID" value="UER00060"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004455">
        <property type="term" value="F:ketol-acid reductoisomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009099">
        <property type="term" value="P:valine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00435">
        <property type="entry name" value="IlvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013023">
        <property type="entry name" value="KARI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000506">
        <property type="entry name" value="KARI_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013116">
        <property type="entry name" value="KARI_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014359">
        <property type="entry name" value="KARI_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21371">
        <property type="entry name" value="PTHR21371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01450">
        <property type="entry name" value="IlvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07991">
        <property type="entry name" value="IlvN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000116">
        <property type="entry name" value="IlvC_gammaproteo"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00465">
        <property type="entry name" value="ilvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51851">
        <property type="entry name" value="KARI_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51850">
        <property type="entry name" value="KARI_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8 9" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7 8 9" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="12" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6 8 9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 8 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0521">NADP</keyword>
    <keyword evidence="8 9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="KARI N-terminal Rossmann" evidence="10">
        <location>
            <begin position="1"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="domain" description="KARI C-terminal knotted" evidence="11">
        <location>
            <begin position="180"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="105"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="22"/>
            <end position="25"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="45"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="131"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 9">
        <location>
            <position position="188"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8 9">
        <location>
            <position position="192"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 9">
        <location>
            <position position="224"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 9">
        <location>
            <position position="228"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 9">
        <location>
            <position position="249"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010318"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO19241.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="330" mass="36378" checksum="E03E79D1084D97FD" modified="2015-11-11" version="1">MYYEKDADISMLKGKKIAVIGYGSQGHAQAQNLRESGMDVIVSTRTGTPNYQLAVKHGFKPLSVDEAAQQGDFIQILMPDETQRAVYESQIKPHLKDGKTLCFSHGFNIHFGQVVPPANIDVIMIAPKGPGHLVRSEFEKGGGVPCLMAIHQDATGKAKGKAMAYAHGIGGTRAGVMETTFAEETETDLFGEQAVLCGGAAALVKAGFETLVEAGYQPELAYFECMHELKLIVDLFYQGGLSYMRYSISNTAEYGDLTRGPRIVTAETKKEMKRILSEIQSGQFAREWILENQAGRPVFNALEKKDKGHLIEKVGRELRKMMKWINAKEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWA0</accession>
    <name>A0A0M2UWA0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Chloride channel protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_01414</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000146">
        <property type="protein sequence ID" value="KKO19855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19855">
        <property type="protein sequence ID" value="KKO19855"/>
        <property type="gene ID" value="BROFUL_01414"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1745"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005247">
        <property type="term" value="F:voltage-gated chloride channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014743">
        <property type="entry name" value="Cl-channel_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001807">
        <property type="entry name" value="Cl-channel_volt-gated"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00654">
        <property type="entry name" value="Voltage_CLC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00762">
        <property type="entry name" value="CLCHANNEL"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81340">
        <property type="entry name" value="SSF81340"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0129">CBS domain</keyword>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="30"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="104"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="199"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="231"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="273"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="313"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="341"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="373"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="406"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="437"/>
            <end position="457"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="7">
        <location>
            <begin position="492"/>
            <end position="548"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="7">
        <location>
            <begin position="556"/>
            <end position="618"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="624" mass="67628" checksum="BBD66210370A0DFB" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWA4</accession>
    <name>A0A0M2UWA4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_01182</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell projection</location>
            <location evidence="2">Cilium membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
            <location evidence="1">Microtubule organizing center</location>
            <location evidence="1">Centrosome</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the BBS4 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000126">
        <property type="protein sequence ID" value="KKO20107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20107">
        <property type="protein sequence ID" value="KKO20107"/>
        <property type="gene ID" value="BROFUL_01182"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005815">
        <property type="term" value="C:microtubule organizing center"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028786">
        <property type="entry name" value="BBS4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44186">
        <property type="entry name" value="PTHR44186"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="5 7" id="KW-0802">TPR repeat</keyword>
    <keyword evidence="9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="34"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="7">
        <location>
            <begin position="249"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="7">
        <location>
            <begin position="283"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="7">
        <location>
            <begin position="317"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="8">
        <location>
            <begin position="128"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004300"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004309"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023778"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO20107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="385" mass="44893" checksum="F039BD610A34914E" modified="2015-11-11" version="1">MKLSFENVLNRLKDVKKIVSASSKNTFIKTDKQLSVILIATFGVSVVALFCYWFFKEKPYYDTLLAEKDELINSLKFTRDKQKKIHENAVDAYEKKLATEYVSKSIYDDKINDYEQKLTSFRNDYVHKDELTKQAADLENRLKEESLAKEQQVKSDYEQKITTLEQKTSLLEDKNLGLKTTLKEATDFIREEKEMLEETLVLERKKAFIPSLIIAETKNRIVDANTLKKLVAIKNKLRRIEEMNIALKPDTYFEMGIVSYYNKQPGEAIELWENAISLNKNNFKTYICLGVVYTEQKMADNAVKILQRAIEINPKYSTLHLVLARVYEHKEALDDAIYEYSRVLELNPESIDLYNTLGTLYEKKGLNEEARKSFAQYEKLKGIKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWB9</accession>
    <name>A0A0M2UWB9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01434</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000146">
        <property type="protein sequence ID" value="KKO19875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19875">
        <property type="protein sequence ID" value="KKO19875"/>
        <property type="gene ID" value="BROFUL_01434"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="207" mass="23393" checksum="7B1F8042A9CBF5F3" modified="2015-11-11" version="1">MKYGSNFFLGCLFVAMGCSSVQQPYSSSLNYSKTDAFKETPIHRTLLLPFEYDVDREAIIDEVTEAFAVELRKLGRFEVVLPADGRGTTAINQGIWSRGMVDVDTILALRNQYGADAIIFGNITHYRPYEPMLLGVKVGMFSTDSGLVVWSADGVYDSNENEVAEQVKQYFESTHQKNALYGWRLILLSMRRYSQFVANQITKTLQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWD0</accession>
    <name>A0A0M2UWD0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00899</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000109">
        <property type="protein sequence ID" value="KKO20378.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20378">
        <property type="protein sequence ID" value="KKO20378"/>
        <property type="gene ID" value="BROFUL_00899"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20378.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="73" mass="8267" checksum="1412C090D64B9F00" modified="2015-11-11" version="1">MKVVKALFNGQDIQLIEPIKTKKKTEVLVIFPNDAEIFAPEKARRLLRGSGKGEMLTEKLLKSRSEDIKLEGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWE1</accession>
    <name>A0A0M2UWE1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01106</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20147">
        <property type="protein sequence ID" value="KKO20147"/>
        <property type="gene ID" value="BROFUL_01106"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="49" mass="5796" checksum="2EDE813540F294B4" modified="2015-11-11" version="1">MKKDVALKEIENIKNQLVRKYKPEEVEERIALGDPFVNKIFKKGKFLYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWI6</accession>
    <name>A0A0M2UWI6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01991</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19331.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19331">
        <property type="protein sequence ID" value="KKO19331"/>
        <property type="gene ID" value="BROFUL_01991"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19331.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="629" mass="71172" checksum="2086DDEEB696B763" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWM6</accession>
    <name>A0A0M2UWM6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Polygalacturonase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">pehV</name>
        <name evidence="2" type="ORF">BROFUL_01249</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO19980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19980">
        <property type="protein sequence ID" value="KKO19980"/>
        <property type="gene ID" value="BROFUL_01249"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="553" mass="57370" checksum="FD6E4E4FD9BF3967" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWN6</accession>
    <name>A0A0M2UWN6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA (cytosine-5-)-methyltransferase</fullName>
            <ecNumber evidence="2">2.1.1.37</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">dcm_3</name>
        <name evidence="7" type="ORF">BROFUL_01098</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 2'-deoxycytidine in DNA + S-adenosyl-L-methionine = a 5-methyl-2'-deoxycytidine in DNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:13681"/>
            <dbReference type="Rhea" id="RHEA-COMP:11369"/>
            <dbReference type="Rhea" id="RHEA-COMP:11370"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:85452"/>
            <dbReference type="ChEBI" id="CHEBI:85454"/>
            <dbReference type="EC" id="2.1.1.37"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.37" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20247.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20247">
        <property type="protein sequence ID" value="KKO20247"/>
        <property type="gene ID" value="BROFUL_01098"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1366"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003886">
        <property type="term" value="F:DNA (cytosine-5-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001525">
        <property type="entry name" value="C5_MeTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031303">
        <property type="entry name" value="C5_meth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00145">
        <property type="entry name" value="DNA_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00095">
        <property type="entry name" value="C5_MTASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0680">Restriction system</keyword>
    <keyword evidence="5" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4 7" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000743"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20247.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="160" mass="18997" checksum="1E7015C6E526B040" modified="2015-11-11" version="1">MRVFQKAKVLRNGIDVLTQHVTRPHTEQDKEIYRIVVEKWERERERERLNYNDLPETLKTHENRDAFLDRFKVVADNMPYSQTVVAHIAKDGHYYIHPDIEQNRSISVREAARLQSFPDDYYFEGIKEGQNRTAAFKQIGNAVPPLMVEKIARKLVRYLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWP0</accession>
    <name>A0A0M2UWP0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_02316</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the GSP F family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18924">
        <property type="protein sequence ID" value="KKO18924"/>
        <property type="gene ID" value="BROFUL_02316"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.81.30">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003004">
        <property type="entry name" value="GspF/PilC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018076">
        <property type="entry name" value="T2SS_GspF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042094">
        <property type="entry name" value="T2SS_GspF_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30012">
        <property type="entry name" value="PTHR30012"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00482">
        <property type="entry name" value="T2SSF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00812">
        <property type="entry name" value="BCTERIALGSPF"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="162"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="215"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="372"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="domain" description="T2SSF" evidence="8">
        <location>
            <begin position="66"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="domain" description="T2SSF" evidence="8">
        <location>
            <begin position="269"/>
            <end position="390"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00482"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="400" mass="44432" checksum="21A52B2A552207F3" modified="2015-11-11" version="1">MSVFRYKLLTASSGIVEGEKEALSRADLITELRKSGHIVLYIQQADKNKQFGFFLNRLNKKAVLPFTQELATLLEGGIPLDKSLSILLSGQDRNMIKDVVEDLLNGIKSGKSFAEALTNHIKLFSSVYINMVRAGEEGGVLPQVLKRLGAFQERLQKVRSEIVSAMIYPILLSFTGFVCVGALIVYVIPKFAQIFDGMGISLPFSTMILMGMSQYLIRYGWTLILAALIAVFLYKKAMKDNATSIKLDQKKLRLPLVGNLLWKMQISRFARTLGTLLENGVPLLKSMDIVKDVLSNRYLADILRDVKANVKEGAGLTLSLAKRGFLPEIAVHLLKVGEETGNLDKMLLKVADNFDADIEHRMKRLVTMVEPVLILLMGALIGVIVISMLTAILSVNDLRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWP9</accession>
    <name>A0A0M2UWP9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">50S ribosomal protein L4</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01923</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL4 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19396.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19396">
        <property type="protein sequence ID" value="KKO19396"/>
        <property type="gene ID" value="BROFUL_01923"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2392"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1370.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002136">
        <property type="entry name" value="Ribosomal_L4/L1e"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023574">
        <property type="entry name" value="Ribosomal_L4_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013005">
        <property type="entry name" value="Ribosomal_uL4/L1e"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10746">
        <property type="entry name" value="PTHR10746"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00573">
        <property type="entry name" value="Ribosomal_L4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52166">
        <property type="entry name" value="SSF52166"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 6" id="KW-0689">Ribosomal protein</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="48"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00019302"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19396.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="121" mass="13770" checksum="869DFB8658B46B5C" modified="2015-11-11" version="1">MEIPVYNKQGEKIDRIQLDEKKFGAPIRTTLLRDVVIMYEANMRQGTASTKTKAEVAGGGKKPWVQKHTGRARAGSIRSPFGRGGGLRLVQNQEIILIRFPKKRRNLHFTLLWRYGHGITN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWR6</accession>
    <name>A0A0M2UWR6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00766</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000097">
        <property type="protein sequence ID" value="KKO20508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="SMR" id="A0A0M2UWR6"/>
    <dbReference type="EnsemblBacteria" id="KKO20508">
        <property type="protein sequence ID" value="KKO20508"/>
        <property type="gene ID" value="BROFUL_00766"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.972"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008170">
        <property type="term" value="F:N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006306">
        <property type="term" value="P:DNA methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003356">
        <property type="entry name" value="DNA_methylase_A-5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02384">
        <property type="entry name" value="N6_Mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N6_Mtase" evidence="1">
        <location>
            <begin position="4"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="405" mass="45640" checksum="3FF0C973087AB149" modified="2015-11-11" version="1" fragment="single">TTGYDPTCGSASLLLKVADESESGMTIYGQEMDVATAALARMNMILHNNPTAEIKQGNTLSGPLFLDERGRLKAFDFAVANPPFSYKAWSNGFAVQDGTISDIHDRFKDYGIPPKKNGDYAFLLHIIRSLKSKGKGAVILPHGVLFRGGAEGEIRKNIIRRGYIKGIIGLPPNLFYGTGIPACIIVLDKEGAEHRKGIFMVDASKGFEKDGNKNRLREQDIHKIVDVFNKQLEMEKYSRMAPVTEIEANEFNLNIPRYIDSQEGEDIQHIEAHLLGGIPNDDIDALHLYWDVYPTLRKTLFTTGNRVNYSKLLIAHDAIKPSIFSHPEFTAYSKKVDTVFSQWKSKNIPKLRGIAVGDKPKKLIHEISEDLLQVFSSLKLIDKYDVYQHLMVYWSETMQDDVYAW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX40</accession>
    <name>A0A0M2UX40_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Lipopolysaccharide heptosyltransferase I</fullName>
            <ecNumber evidence="2">2.4.99.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">rfaC</name>
        <name evidence="2" type="ORF">BROFUL_02240</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.99.-" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19059">
        <property type="protein sequence ID" value="KKO19059"/>
        <property type="gene ID" value="BROFUL_02240"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03789">
        <property type="entry name" value="GT9_LPS_heptosyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002201">
        <property type="entry name" value="Glyco_trans_9"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01075">
        <property type="entry name" value="Glyco_transf_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="371" mass="41871" checksum="67B4574D5B6FD100" modified="2015-11-11" version="1">MIKTKKKRGGLWRKHPFPYYLNKKIRGLLMRTINLFLGEVRKEKVSLPGEEIKKILLVRINFRIGNAILAIPAISIFQKNFPHARIDFAGAPVSGVLYQHLPVNQRYSITRKFPGILWSYFSLLYKIRSMKYDLAVDVSCSQSMTSSLVVGFSGARIRAGSQGKWDYWFTISVPRPAETNKYKVLPVFFRTMGMETQQILPQLILSPEEKAKGKGKVMALIELNHVPIVGVFVGGRKSKGKKWPVENFLELITTLRAQGMRVIVFFGPDEKELMVLFRQSLGKDVPLVFESSLRIFASMVAHCNLFIACDSGPMHLSCALGVRTIALFLKGNFHHWGPPPEIAHIIYRTEGIRVEDIVEVAVAEVGNVTPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXG5</accession>
    <name>A0A0M2UXG5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00680</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20562">
        <property type="protein sequence ID" value="KKO20562"/>
        <property type="gene ID" value="BROFUL_00680"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.867"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GFO_IDH_MocA" evidence="1">
        <location>
            <begin position="6"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="347" mass="38641" checksum="15902910DC023134" modified="2015-11-11" version="1">MIMSDLKVAVIGVGHLGKEHARVYTELPGVSLVGVVDIQPQQAEKIAQRYHTKYFSNYQEVLDQAEAVSIAVPTKSHYGIAKDCLQRGIHVIIEKPMTGTVQEARELIALSKAKGVVLQAGYIERFNPALDAIKKLSINPRFIECHRLSPFTFRSADIGVVLDLMIHDIDILLHITGSKVKKFDAVGVNVISDKEDIANVRIQFQNGCVANVTASRVSIASMRKMRLFSEDSYISIDYQKRDALIYKKSPKLTLKALNFSEMDVSTIADLKSYVFGDLLKVEHIKMDDCEPLKKELSSFVDCVVGRKEPVVSGEEGLKAIEVANDIVCEIEKNLKLVHNAKSREDTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXN5</accession>
    <name>A0A0M2UXN5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">zf-HC2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00416</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000056">
        <property type="protein sequence ID" value="KKO20858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20858">
        <property type="protein sequence ID" value="KKO20858"/>
        <property type="gene ID" value="BROFUL_00416"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027383">
        <property type="entry name" value="Znf_put"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13490">
        <property type="entry name" value="zf-HC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="94"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="zf-HC2" evidence="2">
        <location>
            <begin position="3"/>
            <end position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="275" mass="31305" checksum="C2DD114122525AD5" modified="2015-11-11" version="1">MTCTEAMKHFHEFVDRELDKSHYLVVKEHIDDCDDCQRRYQFEMDVRSLVKTCCVKITAPAYLYDRILKGIDFAEADDRAEAGKERRHQRKVSIPFLSFRSYAIAASILISITGGIFYYTNYYQPDSITIVDNAIKNHVVAVNDNLVFNEKTSVVDNINKYLGNTINTRLGNSSPFLSTKQIGMREGMPARVYGTSSPCVIFDKGGNKLSLQVVRKGGFPITNLERTRVGHKEFYIGNRRGFNSVLWEEDGVTYCLTSDLNKSEMLRFAATLTSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXT2</accession>
    <name>A0A0M2UXT2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00901</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000109">
        <property type="protein sequence ID" value="KKO20380.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20380">
        <property type="protein sequence ID" value="KKO20380"/>
        <property type="gene ID" value="BROFUL_00901"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20380.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="67" mass="8055" checksum="D0CC45543811FCC4" modified="2015-11-11" version="1">MKNSLKNFYDNLYKDKTKEGYKQEYTLRSKDFLHKYILFFLDPSKNTRHEIVKKTLPTGQSYLDIGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXV4</accession>
    <name>A0A0M2UXV4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glyco_trans_2-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00589</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000082">
        <property type="protein sequence ID" value="KKO20682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20682">
        <property type="protein sequence ID" value="KKO20682"/>
        <property type="gene ID" value="BROFUL_00589"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="64"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="371" mass="42053" checksum="C892190305B6AB93" modified="2015-11-11" version="1">MSIRQMCDNKKVLESHLNFRRLIVNQGAKRSLHLPVNLSWTKRAVFDESPRRTTQNKCEKGIAIVVTCFNTGQFLDSSLQSIRQQTQQPAAVIVVDDKSTEGQTLKALRKSQQDGWQIIQKKNGDLVPAKNTGIETILRSEPNILGFAFLNAGDQLQPGFVATCESVLQHCSEVGLVSCWAHYSGIKNDLWIRPCPGFPYQWLTNEAVPFSIVRAEALREAGNFRIIMSHGYDNWDLFNAVMAAGWIAVTIPAILGDHRVVEDSALLMARVPAFGKMRREILERFPDLIARDAKDIVFLIESSITQSLCEELFTLRRERTTARTMLSTSRQSVVRILKKLKKRVLQRTPVWMSNFISRITAQSERVGKEIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY61</accession>
    <name>A0A0M2UY61_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Oxidoreductase molybdopterin binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00787</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000099">
        <property type="protein sequence ID" value="KKO20500.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20500">
        <property type="protein sequence ID" value="KKO20500"/>
        <property type="gene ID" value="BROFUL_00787"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000572">
        <property type="entry name" value="OxRdtase_Mopterin-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036374">
        <property type="entry name" value="OxRdtase_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00174">
        <property type="entry name" value="Oxidored_molyb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56524">
        <property type="entry name" value="SSF56524"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Oxidored_molyb" evidence="1">
        <location>
            <begin position="40"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20500.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="183" mass="20217" checksum="E71ED7EB267F3F2D" modified="2015-11-11" version="1">MRIFSIFSWLIIGLFFVTTSVPVEVVQAQTDPCPGGYSNQFRLNGKVENPRRFSLTDLQQYPTHSHLTISYYSGSQGLVTKTYIGVPLIDLLNDAVIITDSTRKNDILRKYVVVRATDCYEVVISLAELLSNFGHQQVLVAFATSDGQPLDDTEGMARLIVPGDKSGGRCVSNITMIQVRSAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYA5</accession>
    <name>A0A0M2UYA5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">FGE-sulfatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00726</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000090">
        <property type="protein sequence ID" value="KKO20550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20550">
        <property type="protein sequence ID" value="KKO20550"/>
        <property type="gene ID" value="BROFUL_00726"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.919"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016187">
        <property type="entry name" value="CTDL_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005532">
        <property type="entry name" value="SUMF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042095">
        <property type="entry name" value="SUMF_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03781">
        <property type="entry name" value="FGE-sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56436">
        <property type="entry name" value="SSF56436"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644162" description="FGE-sulfatase domain-containing protein" evidence="2">
        <location>
            <begin position="24"/>
            <end position="530"/>
        </location>
    </feature>
    <feature type="domain" description="FGE-sulfatase" evidence="3">
        <location>
            <begin position="268"/>
            <end position="506"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="237"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="511"/>
            <end position="530"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="530" mass="60522" checksum="F4D5CEEB02F9C702" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYC2</accession>
    <name>A0A0M2UYC2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ribose-phosphate pyrophosphokinase</fullName>
            <shortName evidence="6">RPPK</shortName>
            <ecNumber evidence="6">2.7.6.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">5-phospho-D-ribosyl alpha-1-diphosphate</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Phosphoribosyl diphosphate synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Phosphoribosyl pyrophosphate synthase</fullName>
            <shortName evidence="6">P-Rib-PP synthase</shortName>
            <shortName evidence="6">PRPP synthase</shortName>
            <shortName evidence="6">PRPPase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">prs</name>
        <name evidence="8" type="ORF">BROFUL_00693</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>ATP + D-ribose 5-phosphate = 5-phospho-alpha-D-ribose 1-diphosphate + AMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:15609"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="ChEBI" id="CHEBI:78346"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.7.6.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="6">Binds 2 Mg(2+) ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Metabolic intermediate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate from D-ribose 5-phosphate (route I): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homohexamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.6.1" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20575">
        <property type="protein sequence ID" value="KKO20575"/>
        <property type="gene ID" value="BROFUL_00693"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.880"/>
    <dbReference type="UniPathway" id="UPA00087">
        <property type="reaction ID" value="UER00172"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004749">
        <property type="term" value="F:ribose phosphate diphosphokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006015">
        <property type="term" value="P:5-phosphoribose 1-diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009165">
        <property type="term" value="P:nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009156">
        <property type="term" value="P:ribonucleoside monophosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00583_B">
        <property type="entry name" value="RibP_PPkinase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000842">
        <property type="entry name" value="PRib_PP_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029099">
        <property type="entry name" value="Pribosyltran_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005946">
        <property type="entry name" value="Rib-P_diPkinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037515">
        <property type="entry name" value="Rib-P_diPkinase_bac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10210">
        <property type="entry name" value="PTHR10210"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14572">
        <property type="entry name" value="Pribosyl_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13793">
        <property type="entry name" value="Pribosyltran_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01251">
        <property type="entry name" value="ribP_PPkin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00114">
        <property type="entry name" value="PRPP_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 6 8" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 6" id="KW-0545">Nucleotide biosynthesis</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pribosyltran_N" evidence="7">
        <location>
            <begin position="13"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="201"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="46"/>
            <end position="48"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="178"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="203"/>
        </location>
        <ligand>
            <name>D-ribose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:78346"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="227"/>
        </location>
        <ligand>
            <name>D-ribose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:78346"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00583"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF13793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="323" mass="35176" checksum="5F4A1C3FF9D5CBBC" modified="2015-11-11" version="1">MDKKRRLEEINHLKIFSGNANPSLAVKICEHLSIRLGNAYVGRFPDGEIDLKVNEDVRGADVFLIQPTCPPVNENLTELLVFIDCLKRASAARITAVLPYYGYARKDRKDEGRVPITAKLVANLITEAGADRALTVDLHAAQIQGFFDIPVDHLLAFPVLSQYFEQLNTGDLVVVTPDVGGIKLARNYSKKLGIKMAIVDKRRIGPEETEVGFVIGDVANKNIVMIDDLIATGGSIAQAANVLKERGAKDIYVGATHPVFCGAAVEKLSAAPIKEIVVTDTIPLNEKAKGLHGKIKVLSISKLLGDAITRIHRHESVSSLFVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYK4</accession>
    <name>A0A0M2UYK4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00124</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000015">
        <property type="protein sequence ID" value="KKO21163.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21163">
        <property type="protein sequence ID" value="KKO21163"/>
        <property type="gene ID" value="BROFUL_00124"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21163.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="42" mass="4851" checksum="D3D4227FE4FEC591" modified="2015-11-11" version="1" fragment="single">MLELDFDVGIRWLLHYRCVGQSDDKRGKGSRNYHSLGTARSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYL5</accession>
    <name>A0A0M2UYL5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycosyltransferase family 2</fullName>
            <ecNumber evidence="2">2.4.1.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00587</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.-" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000082">
        <property type="protein sequence ID" value="KKO20680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20680">
        <property type="protein sequence ID" value="KKO20680"/>
        <property type="gene ID" value="BROFUL_00587"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="509"/>
            <end position="622"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="801" mass="90847" checksum="3F288DFE01DBE7BF" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYR1</accession>
    <name>A0A0M2UYR1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00521</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000072">
        <property type="protein sequence ID" value="KKO20750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20750">
        <property type="protein sequence ID" value="KKO20750"/>
        <property type="gene ID" value="BROFUL_00521"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="76" mass="8652" checksum="49F36DC9D747B843" modified="2015-11-11" version="1">MLSVKGTYKDGKVIIQQEIKTEKPINVIVTFLEEVKTPGVRRLDINKFSFKKARKLLEGYKGSLSDAIIEERRSAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYW5</accession>
    <name>A0A0M2UYW5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 10">Adenylosuccinate lyase</fullName>
            <shortName evidence="10">ASL</shortName>
            <ecNumber evidence="4 10">4.3.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9 10">Adenylosuccinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">BROFUL_00261</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>(2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinate = 5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide + fumarate</text>
            <dbReference type="Rhea" id="RHEA:23920"/>
            <dbReference type="ChEBI" id="CHEBI:29806"/>
            <dbReference type="ChEBI" id="CHEBI:58443"/>
            <dbReference type="ChEBI" id="CHEBI:58475"/>
            <dbReference type="EC" id="4.3.2.2"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="7">
            <dbReference type="Rhea" id="RHEA:23921"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>N(6)-(1,2-dicarboxyethyl)-AMP = AMP + fumarate</text>
            <dbReference type="Rhea" id="RHEA:16853"/>
            <dbReference type="ChEBI" id="CHEBI:29806"/>
            <dbReference type="ChEBI" id="CHEBI:57567"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="4.3.2.2"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="8">
            <dbReference type="Rhea" id="RHEA:16854"/>
        </physiologicalReaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 10">Purine metabolism; AMP biosynthesis via de novo pathway; AMP from IMP: step 2/2.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 10">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.3.2.2" evidence="4 10"/>
    <dbReference type="EMBL" id="LAQJ01000031">
        <property type="protein sequence ID" value="KKO21012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21012">
        <property type="protein sequence ID" value="KKO21012"/>
        <property type="gene ID" value="BROFUL_00261"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.319"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00132"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00075">
        <property type="reaction ID" value="UER00336"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070626">
        <property type="term" value="F:(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido) succinate lyase (fumarate-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004018">
        <property type="term" value="F:N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044208">
        <property type="term" value="P:'de novo' AMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019468">
        <property type="entry name" value="AdenyloSucc_lyase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020557">
        <property type="entry name" value="Fumarate_lyase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000362">
        <property type="entry name" value="Fumarate_lyase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022761">
        <property type="entry name" value="Fumarate_lyase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008948">
        <property type="entry name" value="L-Aspartase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004769">
        <property type="entry name" value="Pur_lyase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10397">
        <property type="entry name" value="ADSL_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00206">
        <property type="entry name" value="Lyase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00149">
        <property type="entry name" value="FUMRATELYASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00998">
        <property type="entry name" value="ADSL_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48557">
        <property type="entry name" value="SSF48557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00928">
        <property type="entry name" value="purB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00163">
        <property type="entry name" value="FUMARATE_LYASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 12" id="KW-0456">Lyase</keyword>
    <keyword evidence="6 10" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ADSL_C" evidence="11">
        <location>
            <begin position="375"/>
            <end position="459"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00017058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00024477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00024487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00030717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU361172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO21012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="484" mass="54986" checksum="1B2A8554BBDE5CC2" modified="2015-11-11" version="1">MPSTTPYTTYQSPLSERYASKEMCSLFSDQYKFSTWRRLWIALAEAQQELGLQAITQEQIGEMRHFQDSINFDAARAYEKKLRHDVMSHIHAYGDQCPKAKPIIHLGATSAYVQDNTELIQMREGLRIIFAKLVNIVGALSSQAMKYKDLATLSFTHFQPAQPTTLGKRICLWIQDYLLDIEEVDLRIAGLRFHGVKGTTGTQASFLSLFHNDAEKVKQLDELVTKKMGFDKYYPVTGQTYSRKVDSQIVFSLAGIAQSSQKFSNDMRLLQHLKEVEEPFEEEQIGSSAMAYKRNPMRSERVAALARYVLCNCLNPAFTAASQWFERTLDDSANKRIAVPETFLAIDGIVNIVFNVVSGFSVYPQVISRHLADELPFMITENILMEAVNAGGDRQALHEGIRRHAMEAARAMKEEGKNNDLLERIERDPSFSRIKSRLKIIAEPKSLVGRAPQQVEEFMQQSINPLLKRFGHLLDKKCIPALHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ08</accession>
    <name>A0A0M2UZ08_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01051</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20201.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20201">
        <property type="protein sequence ID" value="KKO20201"/>
        <property type="gene ID" value="BROFUL_01051"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644183" evidence="1">
        <location>
            <begin position="25"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20201.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="68" mass="7757" checksum="1C364E48DB3FB750" modified="2015-11-11" version="1">MKKHKTFIQSILLMASVSLFGFLASCSSTDKYHNKRHLDTIKKDLDSAHRDTDHILGLDEPSILTEEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ09</accession>
    <name>A0A0M2UZ09_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00418</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000056">
        <property type="protein sequence ID" value="KKO20860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20860">
        <property type="protein sequence ID" value="KKO20860"/>
        <property type="gene ID" value="BROFUL_00418"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="38" mass="4547" checksum="C06D69C6AC722BE4" modified="2015-11-11" version="1">MYVFEALFLRTYTRISWEPVFVSKRTFSTEKCIITIIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ38</accession>
    <name>A0A0M2UZ38_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01556</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000162">
        <property type="protein sequence ID" value="KKO19734.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19734">
        <property type="protein sequence ID" value="KKO19734"/>
        <property type="gene ID" value="BROFUL_01556"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009116">
        <property type="term" value="P:nucleoside metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035994">
        <property type="entry name" value="Nucleoside_phosphorylase_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53167">
        <property type="entry name" value="SSF53167"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19734.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="62" mass="7195" checksum="48F29D7A4F3C5528" modified="2015-11-11" version="1">MEGAAFFYACLMERIPCLQIRTISNYIEDRNKGRWNVPLAIDNLNTIALNIIHHNYLALMQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ40</accession>
    <name>A0A0M2UZ40_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00370</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000047">
        <property type="protein sequence ID" value="KKO20900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20900">
        <property type="protein sequence ID" value="KKO20900"/>
        <property type="gene ID" value="BROFUL_00370"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="51" mass="5747" checksum="B8316CC87ACCFF5A" modified="2015-11-11" version="1">MTGNIIPRISTDSVEAVKRAIDSVKMQGETVWSLLKIRNTHVVQEYEIAFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ50</accession>
    <name>A0A0M2UZ50_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">YrdC-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01087</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20236">
        <property type="protein sequence ID" value="KKO20236"/>
        <property type="gene ID" value="BROFUL_01087"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1352"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003725">
        <property type="term" value="F:double-stranded RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017945">
        <property type="entry name" value="DHBP_synth_RibB-like_a/b_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006070">
        <property type="entry name" value="YrdC-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01300">
        <property type="entry name" value="Sua5_yciO_yrdC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55821">
        <property type="entry name" value="SSF55821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00057">
        <property type="entry name" value="TIGR00057"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51163">
        <property type="entry name" value="YRDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YrdC-like" evidence="1">
        <location>
            <begin position="15"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="208" mass="23252" checksum="BA5596FF97719794" modified="2015-11-11" version="1">METRVLNLKDRSRYSDHIAEAAYALREGEVVAFPTETVYGLGVHRDHAKAIERIYRVKKRGAEKRLTLMIADADDVKKYVDHFSITAKKLMKSFWPGPLAIVFPLKDGTDISIRFPDDTAARDLIRAAQVPVVTTSANISEYPASTDAQQVLMDFKGKIHIILDGGSTRFRSPSTVLKLKDEGFEIIRTGIISETMIRGCLENTLAKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ75</accession>
    <name>A0A0M2UZ75_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">FeoA domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01011</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000119">
        <property type="protein sequence ID" value="KKO20266.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20266">
        <property type="protein sequence ID" value="KKO20266"/>
        <property type="gene ID" value="BROFUL_01011"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046914">
        <property type="term" value="F:transition metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007167">
        <property type="entry name" value="Fe-transptr_FeoA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038157">
        <property type="entry name" value="FeoA_core_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008988">
        <property type="entry name" value="Transcriptional_repressor_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04023">
        <property type="entry name" value="FeoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00899">
        <property type="entry name" value="FeoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50037">
        <property type="entry name" value="SSF50037"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FeoA" evidence="3">
        <location>
            <begin position="24"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20266.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="96" mass="10344" checksum="B58033F225E8AB80" modified="2015-11-11" version="1">MNNNSNEKHEHMNSEEDSSSGSAFPLTFASEGQKVRIVALKGGRGFQERLISMGFNAGDEIEIVQSRQQGSVLVASEGGRYILGGGMAQKIMVVQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZC4</accession>
    <name>A0A0M2UZC4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00958</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000116">
        <property type="protein sequence ID" value="KKO20326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20326">
        <property type="protein sequence ID" value="KKO20326"/>
        <property type="gene ID" value="BROFUL_00958"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="188" mass="21131" checksum="1FF229EBD7ED82A9" modified="2015-11-11" version="1">MQCAKWYLPMLGVVILGIPAWCNAFDIHLTQEQLKEANEYGAQYKGKEIFESAIGKSARFGEYPGGDGGLIMSKYMRVAVSSAMRALKNEALTPQDLKEIDASTTFNVIVSIPEENIQNPEDVQILLIQGTNNILPQKTEFGMKYKDKRQGIIGIFSYEKINPKASTTILIKTRNDERKFTIDFSDVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZD9</accession>
    <name>A0A0M2UZD9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00285</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000033">
        <property type="protein sequence ID" value="KKO20985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20985">
        <property type="protein sequence ID" value="KKO20985"/>
        <property type="gene ID" value="BROFUL_00285"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.347"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011460">
        <property type="entry name" value="DUF1566"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07603">
        <property type="entry name" value="DUF1566"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="93"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="115"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="192" mass="20683" checksum="3431EEE83FD4E7EC" modified="2015-11-11" version="1">MCFLRFCAVVIGLIIFVPFLACYGTPGYPGIPTARAADKLDSNTSSNHRFTDNSDGTVTDNLTGLIWLQNANVAGARNWTDALADVENLNRDGTMHGTSAGDKSKGGGHQNDWRLPNRSELSGLTDSSNNNPALPSGYARFFSGVQSDSYWSGDTLKGGIAYAWVVNLSDHGIMDTANKIETCYVWPVRAGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZF3</accession>
    <name>A0A0M2UZF3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01428</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000146">
        <property type="protein sequence ID" value="KKO19869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19869">
        <property type="protein sequence ID" value="KKO19869"/>
        <property type="gene ID" value="BROFUL_01428"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644192" evidence="1">
        <location>
            <begin position="20"/>
            <end position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="261" mass="28871" checksum="31D0A6C415CDF746" modified="2015-11-11" version="1">MFRCIAILLCLVGLSAVKATYGYSHDENVPESNVSGDVTKTHAEHHGVKRSLGFSNFLEGWFTSWQAYEETKDDAPRVPLLRIAPAFFQREVRFNYIYIDDEHHGEADVNEFAFALELPLTLRFKVDIESKVLHVNTIEDSDNVGFGDTRIALRAMLFENNTLSLSTGSIINIPTGDADRGLGEEITTLGQQLAGWIDLGHRISLHTFLGVEVPTGGNDKDNADLEFLYGAAISKTITVHGNRVLHGITPFLELNGHKGFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZF4</accession>
    <name>A0A0M2UZF4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7">Octanoyltransferase</fullName>
            <ecNumber evidence="6 7">2.3.1.181</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Lipoate-protein ligase B</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Lipoyl/octanoyl transferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">lipB</name>
        <name evidence="11" type="ORF">BROFUL_00051</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 6 7">Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6 7">
            <text>L-lysyl-[protein] + octanoyl-[ACP] = H(+) + holo-[ACP] + N(6)-octanoyl-L-lysyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:17665"/>
            <dbReference type="Rhea" id="RHEA-COMP:9636"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="Rhea" id="RHEA-COMP:9752"/>
            <dbReference type="Rhea" id="RHEA-COMP:9928"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29969"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="ChEBI" id="CHEBI:78463"/>
            <dbReference type="ChEBI" id="CHEBI:78809"/>
            <dbReference type="EC" id="2.3.1.181"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 6 7">Protein modification; protein lipoylation via endogenous pathway; protein N(6)-(lipoyl)lysine from octanoyl-[acyl-carrier-protein]: step 1/2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="6">In the reaction, the free carboxyl group of octanoic acid is attached via an amide linkage to the epsilon-amino group of a specific lysine residue of lipoyl domains of lipoate-dependent enzymes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6 7">Belongs to the LipB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.181" evidence="6 7"/>
    <dbReference type="EMBL" id="LAQJ01000007">
        <property type="protein sequence ID" value="KKO21212.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21212">
        <property type="protein sequence ID" value="KKO21212"/>
        <property type="gene ID" value="BROFUL_00051"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.64"/>
    <dbReference type="UniPathway" id="UPA00538">
        <property type="reaction ID" value="UER00592"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033819">
        <property type="term" value="F:lipoyl(octanoyl) transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009249">
        <property type="term" value="P:protein lipoylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd16444">
        <property type="entry name" value="LipB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00013">
        <property type="entry name" value="LipB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004143">
        <property type="entry name" value="BPL_LPL_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000544">
        <property type="entry name" value="Octanoyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020605">
        <property type="entry name" value="Octanoyltransferase_CS"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016262">
        <property type="entry name" value="LPLase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00214">
        <property type="entry name" value="lipB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51733">
        <property type="entry name" value="BPL_LPL_CATALYTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01313">
        <property type="entry name" value="LIPB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6 7" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="11" id="KW-0436">Ligase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="BPL/LPL catalytic" evidence="10">
        <location>
            <begin position="32"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="77"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="157"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="6 8">
        <location>
            <position position="175"/>
        </location>
    </feature>
    <feature type="site" description="Lowers pKa of active site Cys" evidence="6 9">
        <location>
            <position position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00024732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRNR" id="PIRNR016262"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR016262-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR016262-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO21212.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="235" mass="26435" checksum="580A216C8499B80A" modified="2015-11-11" version="1">MARSGLLLQLDTVEYGDAWELQKALLEARISDTIEDCLVLLQHPPTFTYGRRYKEGALISNRDYYEKNGFAVYKTDRGGLATYHGPGQAVGYSVIKMSAYTGDYYQYLRMLEEVMIRTLSGFDIEAERREGYTGVWVNGEKIGFIGVRMALGYTMHGFSLNVNNDTSPFRLITPCGIQGIRVASLQTVAKKNVSVKAVYREITKCYSDVFQVQMTAIGIKAMMQRLGVINNMVKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZH1</accession>
    <name>A0A0M2UZH1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative gluconate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00027</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000006">
        <property type="protein sequence ID" value="KKO21232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21232">
        <property type="protein sequence ID" value="KKO21232"/>
        <property type="gene ID" value="BROFUL_00027"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="216" mass="23473" checksum="E7B21F47E2936DEB" modified="2015-11-11" version="1">MVSRTRSDLETTAHEIQDNGVQSIPIVADVTRQEEVNMMVEKVLAELKTIDILVNNVGTFLGGPFLEFSLENWHKMMEINLTSTYLCSQAVGKHMVGRQQGKIINVSSVLGLFGAGSSAAYCASKGGVIQLTRALAMEWAKYHVTVNALAPYTLETDLTKSMLENEKVKNIILSRIPLKRIGKPADLSGAVVFLASRASDYITGQVLCVDGGFSAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZH5</accession>
    <name>A0A0M2UZH5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">ATP-dependent 6-phosphofructokinase</fullName>
            <shortName evidence="10">ATP-PFK</shortName>
            <shortName evidence="10">Phosphofructokinase</shortName>
            <ecNumber evidence="10">2.7.1.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Phosphohexokinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">pfkA</name>
        <name evidence="12" type="ORF">BROFUL_00032</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>ATP + beta-D-fructose 6-phosphate = ADP + beta-D-fructose 1,6-bisphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:16109"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:32966"/>
            <dbReference type="ChEBI" id="CHEBI:57634"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 10">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 10">Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 3/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Homodimer or homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the phosphofructokinase type A (PFKA) family. Mixed-substrate PFK group III subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.11" evidence="10"/>
    <dbReference type="EMBL" id="LAQJ01000006">
        <property type="protein sequence ID" value="KKO21237.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21237">
        <property type="protein sequence ID" value="KKO21237"/>
        <property type="gene ID" value="BROFUL_00032"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.42"/>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00182"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003872">
        <property type="term" value="F:6-phosphofructokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047334">
        <property type="term" value="F:diphosphate-fructose-6-phosphate 1-phosphotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006002">
        <property type="term" value="P:fructose 6-phosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.460">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01976">
        <property type="entry name" value="Phosphofructokinase_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022953">
        <property type="entry name" value="ATP_PFK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012003">
        <property type="entry name" value="ATP_PFK_prok-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015912">
        <property type="entry name" value="Phosphofructokinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000023">
        <property type="entry name" value="Phosphofructokinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012829">
        <property type="entry name" value="Phosphofructokinase_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035966">
        <property type="entry name" value="PKF_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00365">
        <property type="entry name" value="PFK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000532">
        <property type="entry name" value="ATP_PFK_prok"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00476">
        <property type="entry name" value="PHFRCTKINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53784">
        <property type="entry name" value="SSF53784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02483">
        <property type="entry name" value="PFK_mixed"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00433">
        <property type="entry name" value="PHOSPHOFRUCTOKINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 10" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="7 10 12" id="KW-0418">Kinase</keyword>
    <keyword evidence="8 10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PFK" evidence="11">
        <location>
            <begin position="2"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10">
        <location>
            <begin position="137"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10">
        <location>
            <begin position="181"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10">
        <location>
            <begin position="283"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="10">
        <location>
            <position position="139"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="10"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="74"/>
            <end position="75"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="114"/>
            <end position="117"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="115"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="174"/>
        </location>
        <ligand>
            <name>substrate</name>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="234"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="277"/>
        </location>
        <ligand>
            <name>substrate</name>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="site" description="Important for substrate specificity; cannot use PPi as phosphoryl donor" evidence="10">
        <location>
            <position position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01976"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO21237.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="359" mass="38131" checksum="E587A6A6D3948E72" modified="2015-11-11" version="1">MKVGVLTGGGDCPGLNAVIRAVVKTASVKYNYKIIGIEDGFDGLILPNKSRELTPWNIRGILPIGGTILGTTNRSNPFEYKVMKDGKPEVQDVSREVMNNIQSMELDALIVIGGDGTLKIANELFKLGCPVVGVPKTIDNDILATDVTFGFHTAVQTVTDALDRLHTTAESHHRVMVVEVMGRYVGWIALETGIGGGADVILIPEIPFDIEKVGQKIMDRKKGGNRSNIVVVSEGARPVGGDVTVLHCAEAGGGAERLGGIGNKVGASIGNYGMEVRVTVLGHLQRGGSPCAFDRILSTQFGVAAVDLIARKRFGEMVCLRGKRIESVPFSDVAQGQKTVPTEDGLVKVAESIGISFGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZJ6</accession>
    <name>A0A0M2UZJ6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">YcfA-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00907</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the HicA mRNA interferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000109">
        <property type="protein sequence ID" value="KKO20386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20386">
        <property type="protein sequence ID" value="KKO20386"/>
        <property type="gene ID" value="BROFUL_00907"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.920.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012933">
        <property type="entry name" value="HicA_mRNA_interferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038570">
        <property type="entry name" value="HicA_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07927">
        <property type="entry name" value="HicA_toxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-1277">Toxin-antitoxin system</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006620"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="76" mass="9053" checksum="BF5C5013F78CA29B" modified="2015-11-11" version="1">MPRIIPVDYKTLLNIFQRYGCAYKRKRGSHHILSYPKAKRAVVIPEDEEIDVEIIKNNMRTVGMTREQYFELLKKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZZ8</accession>
    <name>A0A0M2UZZ8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00099</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the HicA mRNA interferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000011">
        <property type="protein sequence ID" value="KKO21170.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21170">
        <property type="protein sequence ID" value="KKO21170"/>
        <property type="gene ID" value="BROFUL_00099"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.920.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012933">
        <property type="entry name" value="HicA_mRNA_interferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038570">
        <property type="entry name" value="HicA_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07927">
        <property type="entry name" value="HicA_toxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-1277">Toxin-antitoxin system</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006620"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO21170.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="85" mass="10067" checksum="71F6B925858E21FC" modified="2015-11-11" version="1">MKRRDLIRHLETHGCEFLREGGNHTVYVNRALKKTSTVPKHKEINEFLVYKICKDLGSQNRKCRMTVGNFRRCLRRARIKKTAPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V054</accession>
    <name>A0A0M2V054_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00035</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000006">
        <property type="protein sequence ID" value="KKO21240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21240">
        <property type="protein sequence ID" value="KKO21240"/>
        <property type="gene ID" value="BROFUL_00035"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="64" mass="7304" checksum="C55B543253C12CBF" modified="2015-11-11" version="1">MVKVKTFTSSLKIFQVHNELVELDRTVNEFLQQNKIKKVISVCDSTTNNDGGTMGIIRVLTYEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0G9</accession>
    <name>A0A0M2V0G9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Queuine tRNA-ribosyltransferase</fullName>
            <ecNumber evidence="4">2.4.2.29</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Guanine insertion enzyme</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">tRNA-guanine transglycosylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">tgt</name>
        <name evidence="6" type="ORF">BROFUL_01059</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>7-aminomethyl-7-carbaguanine + guanosine(34) in tRNA = 7-aminomethyl-7-carbaguanosine(34) in tRNA + guanine</text>
            <dbReference type="Rhea" id="RHEA:24104"/>
            <dbReference type="Rhea" id="RHEA-COMP:10341"/>
            <dbReference type="Rhea" id="RHEA-COMP:10342"/>
            <dbReference type="ChEBI" id="CHEBI:16235"/>
            <dbReference type="ChEBI" id="CHEBI:58703"/>
            <dbReference type="ChEBI" id="CHEBI:74269"/>
            <dbReference type="ChEBI" id="CHEBI:82833"/>
            <dbReference type="EC" id="2.4.2.29"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="4">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4">tRNA modification; tRNA-queuosine biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer. Within each dimer, one monomer is responsible for RNA recognition and catalysis, while the other monomer binds to the replacement base PreQ1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the queuine tRNA-ribosyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.29" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20209.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20209">
        <property type="protein sequence ID" value="KKO20209"/>
        <property type="gene ID" value="BROFUL_01059"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1323"/>
    <dbReference type="UniPathway" id="UPA00392"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008479">
        <property type="term" value="F:queuine tRNA-ribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008616">
        <property type="term" value="P:queuosine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0101030">
        <property type="term" value="P:tRNA-guanine transglycosylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.105">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00168">
        <property type="entry name" value="Q_tRNA_Tgt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004803">
        <property type="entry name" value="TGT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036511">
        <property type="entry name" value="TGT-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002616">
        <property type="entry name" value="tRNA_ribo_trans-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01702">
        <property type="entry name" value="TGT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51713">
        <property type="entry name" value="SSF51713"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00430">
        <property type="entry name" value="Q_tRNA_tgt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00449">
        <property type="entry name" value="tgt_general"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0671">Queuosine biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4 6" id="KW-0808">Transferase</keyword>
    <keyword evidence="3 4" id="KW-0819">tRNA processing</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="TGT" evidence="5">
        <location>
            <begin position="13"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="4">
        <location>
            <begin position="91"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="region of interest" description="RNA binding" evidence="4">
        <location>
            <begin position="245"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="region of interest" description="RNA binding; important for wobble base 34 recognition" evidence="4">
        <location>
            <begin position="269"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="4">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="4">
        <location>
            <position position="264"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="145"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="187"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="214"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="302"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="304"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="307"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="333"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01702"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20209.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="367" mass="41268" checksum="98F7671744185FAF" modified="2015-11-11" version="1">MIFKILAGDKQTKARCGELRLGHHSISTPVFMPVGTQGTVKTLTPQQLKETHTKIILCNAYHLCLRPGEQIIKQLGGIHKFMGWDGAIITDSGGYQIFSLSGLTRVSDKGVEFQSPVDGTRLFLTPERMMQIQNDIGADVIMPFDECVPYPCEKDRASVAVKRTLEWAGRCLTTHKNRQQTLFGIVQGSVFRELRIECARNLVEMNFEGYSIGGLSVGEGLLLMNEVLDYTVDYLPADKPRYLMGVGFPVDILNAVERGIDMFDCVVPTRNGRNGCAFTGTGRVKILNSQYKEDTAPLDQTCECYTCRNFSRAYLRHLFLTHEILGLALLSLHNIFFFQNLMQQVRESIVNGEFRDFKAAFLSRQSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1E1</accession>
    <name>A0A0M2V1E1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">tRNA-dihydrouridine synthase</fullName>
            <ecNumber evidence="10">1.3.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BROFUL_00742</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 10">Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>a 5,6-dihydrouridine in tRNA + NAD(+) = a uridine in tRNA + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:54452"/>
            <dbReference type="Rhea" id="RHEA-COMP:13339"/>
            <dbReference type="Rhea" id="RHEA-COMP:13887"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74443"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 5,6-dihydrouridine in tRNA + NADP(+) = a uridine in tRNA + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:23624"/>
            <dbReference type="Rhea" id="RHEA-COMP:13339"/>
            <dbReference type="Rhea" id="RHEA-COMP:13887"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74443"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3 10">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the dus family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.3.1.-" evidence="10"/>
    <dbReference type="EMBL" id="LAQJ01000094">
        <property type="protein sequence ID" value="KKO20534.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20534">
        <property type="protein sequence ID" value="KKO20534"/>
        <property type="gene ID" value="BROFUL_00742"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.935"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017150">
        <property type="term" value="F:tRNA dihydrouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02801">
        <property type="entry name" value="DUS_like_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1200.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035587">
        <property type="entry name" value="DUS-like_FMN-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001269">
        <property type="entry name" value="DUS_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024036">
        <property type="entry name" value="tRNA-dHydroUridine_Synthase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004652">
        <property type="entry name" value="tRNA_dU_NifR3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018517">
        <property type="entry name" value="tRNA_hU_synthase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01207">
        <property type="entry name" value="Dus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006621">
        <property type="entry name" value="Dus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00737">
        <property type="entry name" value="nifR3_yhdG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01136">
        <property type="entry name" value="UPF0034"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 10" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="6 10" id="KW-0288">FMN</keyword>
    <keyword evidence="9 10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="7 10" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="Dus" evidence="12">
        <location>
            <begin position="21"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="11">
        <location>
            <position position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001183"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00002790"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR006621"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR006621-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF01207"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO20534.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="325" mass="36354" checksum="8F42EE20858C68E8" modified="2015-11-11" version="1">MYTMNPHFYVRNIPICGDVILSPMAGFSDIPFRLICREFGMAMSYTEVISMDGVLWNNRKTLKLLEFSPKERPVVFQILGNDEDKIVEACRVIEQLGPDIIDVNMGCSVSDIAGKGAGAGLLKDPAKIGRIFHKLTTTLRVPVTGKIRLGWDDKSRNYLEVAKILEDNGASLIAVHGRTRSQFFYGKADWNAIAEVKQSVNIPVIGNGDVRCVADIDRIRKTTGCDGVMIGRAAIGHPWIFQHKDRDQVAVADKIELIRRHLSLMLEHYGYDIGVILFRKHATKYIMGLPNASELRPRLVTCNSHEEIIDLIASHYGHIREQAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1E5</accession>
    <name>A0A0M2V1E5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00730</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000091">
        <property type="protein sequence ID" value="KKO20544.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20544">
        <property type="protein sequence ID" value="KKO20544"/>
        <property type="gene ID" value="BROFUL_00730"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20544.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="156" mass="18343" checksum="7574638E5EB6AEC2" modified="2015-11-11" version="1" fragment="single">FIQKIVVGFGESAMAQSRKPFCCDECGNDKEFIWKTRHGKETKILTVFQWLRLEQLQVQCKRCGHKMYIVAAYCRDVGLVLRELRRVCKPEAHMCWVIGDSAPCGVYCPTEEWIAKMATASGFERYHFDKLRDRNMKWKNRKHRVPLKEGLLWIEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1I0</accession>
    <name>A0A0M2V1I0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF374 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00250</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000031">
        <property type="protein sequence ID" value="KKO21001.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21001">
        <property type="protein sequence ID" value="KKO21001"/>
        <property type="gene ID" value="BROFUL_00250"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd07983">
        <property type="entry name" value="LPLAT_DUF374-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007172">
        <property type="entry name" value="DUF374"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04028">
        <property type="entry name" value="DUF374"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF374" evidence="1">
        <location>
            <begin position="57"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21001.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="217" mass="24971" checksum="23BCDDDE55DE40DE" modified="2015-11-11" version="1">MKKLKFFLVGILGAWFIRLLAFTIRIQDNPRGFNKKITNTHAIYTFWHCLMLIPAYVGRHRNIQVLISQHSDGEYIAQVIKRLGFGVIRGSTTRGGARAVKGMINKIREGYPIAITPDGPRGPRCIVQPGCIYLSQKARLPIIPATIGLSRYWKLPSWDQFRIPKPFSRALMMYGDPIHIPPRLTEEESERYRLLIENRMNEMTEKADALVRKRKPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V245</accession>
    <name>A0A0M2V245_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Protoglobin domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00083</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000008">
        <property type="protein sequence ID" value="KKO21201.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21201">
        <property type="protein sequence ID" value="KKO21201"/>
        <property type="gene ID" value="BROFUL_00083"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019825">
        <property type="term" value="F:oxygen binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01068">
        <property type="entry name" value="globin_sensor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.490.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009050">
        <property type="entry name" value="Globin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044398">
        <property type="entry name" value="Globin-sensor_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012292">
        <property type="entry name" value="Globin/Proto"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039379">
        <property type="entry name" value="Protoglobin_sensor_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11563">
        <property type="entry name" value="Protoglobin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46458">
        <property type="entry name" value="SSF46458"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Protoglobin" evidence="1">
        <location>
            <begin position="51"/>
            <end position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF11563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21201.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="217" mass="26128" checksum="4A9787AC67E704E6" modified="2015-11-11" version="1">MSIMSDAYMKMFPMEAEKKVSAGKRNPVLEVPEFNTAWKLYRDTSLDIVKRYEYMAQCVGFTDKDTAAIKESKDIIAANLKAILDHIYYEKLITDPWLSRWFRDDSGKIAREYVDIRRARQQRFLLKILECKWDEEFWNFVRWVGAVHVPIFGFEDLYIPIRLNLALWGYIHQYLFNLFAQELKNDPEKLRRITTAWTKLFWIIIDIYHIDYFGPWM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V3C2</accession>
    <name>A0A0M2V3C2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Strong similarity to group II intron-encoded protein LtrA</fullName>
            <ecNumber evidence="3">2.7.7.49</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">ltrA</name>
        <name evidence="3" type="ORF">BROFUL_00105</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.49" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000014">
        <property type="protein sequence ID" value="KKO21164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21164">
        <property type="protein sequence ID" value="KKO21164"/>
        <property type="gene ID" value="BROFUL_00105"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.135"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030931">
        <property type="entry name" value="Group_II_RT_mat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013597">
        <property type="entry name" value="Mat_intron_G2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08388">
        <property type="entry name" value="GIIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="SSF56672"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04416">
        <property type="entry name" value="group_II_RT_mat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="2">
        <location>
            <begin position="97"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO21164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="456" mass="53431" checksum="BD0AAA95F2D9632E" modified="2015-11-11" version="1">MGKARYRGKDLTEVRSPQRKLEPDNAGSEELKQTSLRGIANKAKVNKQHRFQNLNRCLNKSLLRESWRELNKDAASGVDNVTAAEYAERLDSNLQTLAERLKSKRYRAKLVRRCYIPKENGKERPLGIPALEDKLVQLACTKLLTAIYEQDFLDCSHGYRPKRSAKDAAIVLRRELQGGRYGYIVEADIKGFFDNLDHDWLLKMLSLRIDDRAFLHLISKWLKAGVLDTDGTVLHPESGSPQGGIISPILANVYLHYALDLWFQKVVKAHCRGKAELCRYADDFICVFRDKRDAERFYQVLPKRVGKFCLQLEQKKTQIMRFSRSDPRMKQGFSFLGFEFYWKKDRWGTPRVMCRTSRKKLQGACRRVKEWIRQNRHLPGSEFFKGLNSRLRGHYNYYGIKYNYQSLNRFYKWAIACTFKWLNRRGGKRNSYTKETLERILRLIGIARPRITEAIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQI9</accession>
    <name>A0A0M2UQI9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03376</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17925">
        <property type="protein sequence ID" value="KKO17925"/>
        <property type="gene ID" value="BROFUL_03376"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4152"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045784">
        <property type="entry name" value="Radical_SAM_N2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19864">
        <property type="entry name" value="Radical_SAM_N2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Radical_SAM_N2" evidence="2">
        <location>
            <begin position="58"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="1">
        <location>
            <begin position="267"/>
            <end position="324"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF19864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO17925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="332" mass="37309" checksum="78AFA3D2C231D10F" modified="2015-11-11" version="1">MKNALKLFITENLLPLVEMPGQYIGGEWNSVVKEHTDSRIKMVLAFPDTYSIGMSHLGIQILYGLLNEREDTVCERVFAPVDDMESLMRKHQIPLFSLETYTPVREFDIIGFSIQYELSYTNILNMLSLSGIPVIASERSEADPLVIAGGPAAISPEPLADFIDIFLVGDGEECLPQLITLWKDMKRRKLSRSEKLISIAKTLNNAYVPSLFDVTYGWNNTIQQIRPKIDGLSPRIQSASVKDLNTTYFPTKPIVPYVKTVHDRITIEVMRGCTQGCRFCQAGMSKRPTRPRTVENIVRLAELCYANTGHNEISLASLSISDYPALSASWSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR58</accession>
    <name>A0A0M2UR58_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02721</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000253">
        <property type="protein sequence ID" value="KKO18573.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18573">
        <property type="protein sequence ID" value="KKO18573"/>
        <property type="gene ID" value="BROFUL_02721"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3364"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018841">
        <property type="entry name" value="DUF2442"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10387">
        <property type="entry name" value="DUF2442"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="80"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="82"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18573.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="106" mass="11939" checksum="0ADB4A42830D782A" modified="2015-11-11" version="1">MNISAIETEIPKAADVKVTDDTLSVDLSDGRTISVPLEWFPRLVHASLEERNNWRLIGKGHGIHWEDIDEDISVKGLLAGKPSGESQTSFKKWLNQRQSRLTNRST</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR80</accession>
    <name>A0A0M2UR80_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02927</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000274">
        <property type="protein sequence ID" value="KKO18377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18377">
        <property type="protein sequence ID" value="KKO18377"/>
        <property type="gene ID" value="BROFUL_02927"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3623"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00110">
        <property type="entry name" value="LamG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006558">
        <property type="entry name" value="LamG-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001791">
        <property type="entry name" value="Laminin_G"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00282">
        <property type="entry name" value="LamG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00560">
        <property type="entry name" value="LamGL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="SSF49899"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="LamGL" evidence="3">
        <location>
            <begin position="106"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="domain" description="LAM_G_DOMAIN" evidence="2">
        <location>
            <begin position="106"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="419" mass="46845" checksum="04C7AE425ED9BAAD" modified="2015-11-11" version="1" fragment="single">GTTSWSISGITLSNGDNIITITARDRANNTNSDTITVSIPQTTMDATALYNFNEESGTIATDSSGNGNNGTIYGASWTTGRSGDGLSFDGANDYVNLGDPLSLQPNTVSVSVWFKTTDSNGIILRKRPYGYGLEVRSSGRISFWIYNSAATLFRAISPIAYNDNAWHHAVGVYDGSRVRLYIDSVQVASASAGTICYTAGGIAIGRDGNFNGSYFSGLVDELGIYNRALSNFAISESFTRDDLLMHIGALKKEAGRDFRLVTISIPKPQEPVNENTFRFSLDRERLRQAYRREGRYLLRSNMQATAPETVWENYLLLTRIEQAFKDLKGSLSVRPLWHQLERRIEAHIFVSFLAFCLHTTLRNLARGRAGGLTSEAILEKLSGIQMIDVHLPTTDDRHIVMSRYTCWRRTFYFFWHNWD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR91</accession>
    <name>A0A0M2UR91_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cyclic pyranopterin monophosphate synthase</fullName>
            <ecNumber evidence="3">4.6.1.17</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_03194</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate = cyclic pyranopterin phosphate + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:49580"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:59648"/>
            <dbReference type="ChEBI" id="CHEBI:131766"/>
            <dbReference type="EC" id="4.6.1.17"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cofactor biosynthesis; molybdopterin biosynthesis.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.6.1.17" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18145.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18145">
        <property type="protein sequence ID" value="KKO18145"/>
        <property type="gene ID" value="BROFUL_03194"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3938"/>
    <dbReference type="UniPathway" id="UPA00344"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061799">
        <property type="term" value="F:cyclic pyranopterin monophosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.640">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023045">
        <property type="entry name" value="Mo_CF_biosynth-C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036522">
        <property type="entry name" value="MoaC_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002820">
        <property type="entry name" value="Mopterin_CF_biosynth-C_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01967">
        <property type="entry name" value="MoaC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55040">
        <property type="entry name" value="SSF55040"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00581">
        <property type="entry name" value="moaC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MoaC" evidence="5">
        <location>
            <begin position="15"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001637"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18145.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="136" mass="14868" checksum="5AD2F1A78FBDC777" modified="2015-11-11" version="1">MTPLTHFDEQGASRMVDVSNKEITDRVAVAHAKIVMKPETFRLIMDKKVQKGDVLEVARVAGIMAAKQTCTLIPMCHPLNLTSVKIDYTNNSVNEIDVLSEVRVTGKTGVEMEAITAAAVCAITIYDMCKAADKGW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URD4</accession>
    <name>A0A0M2URD4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02684</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000246">
        <property type="protein sequence ID" value="KKO18623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18623">
        <property type="protein sequence ID" value="KKO18623"/>
        <property type="gene ID" value="BROFUL_02684"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="89" mass="10090" checksum="252450EF85AB0280" modified="2015-11-11" version="1">MADCYTMKSRADISRGVLGMQNGKKMKEQKVRSQKIPRPRQQSCKLLEVIADEVAEGILTPEPTDGRKEKRLSNDEIMAFVAFLFFILG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URF0</accession>
    <name>A0A0M2URF0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03108</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000286">
        <property type="protein sequence ID" value="KKO18210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18210">
        <property type="protein sequence ID" value="KKO18210"/>
        <property type="gene ID" value="BROFUL_03108"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="41" mass="4776" checksum="7E841C65B514FCDC" modified="2015-11-11" version="1">MAAMENKLIENIQFLSDIEKFELVDSILMQQDKPTPRILIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URM1</accession>
    <name>A0A0M2URM1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">SIR2_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02787</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000264">
        <property type="protein sequence ID" value="KKO18517.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18517">
        <property type="protein sequence ID" value="KKO18517"/>
        <property type="gene ID" value="BROFUL_02787"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039444">
        <property type="entry name" value="SIR2-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13289">
        <property type="entry name" value="SIR2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SIR2_2" evidence="2">
        <location>
            <begin position="130"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="469"/>
            <end position="500"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="481"/>
            <end position="500"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13289"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18517.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="500" mass="54136" checksum="2490B22F13AD8B14" modified="2015-11-11" version="1">MGKGNALSSTTNLTGAIREAACRPALLSYVRERRCVLFVGAGLSRAAGYPGWRELMETVVQKTIEAAATGSEGSELTALLTTGKYAELADQCREILGRSRFAALLRAELAKPVSPPEVTHLPIVQTPYAAIVTTNFDTLLEDAYALWSNEGVPKCPTGAQLGRHGTLLLDNAFFILKAHGTIHDAASLVFTSEDYRAIIHANPAFQSMMAAILLSHAVIFIGYSLNDVNFRLLLENQLSVFGTQAPPRYALMEGVGPLESQILRRTAGIEVISYPRGEHGNVAAFLSALASATHVKSACYAPHATVIRKRTPLPALRLAIRPREAMLDVEWFETTTDDLEGVRVSLDRRVMGSTTSLPWAEMFKAASGPTISSSPAIIHKIGSLIERPFQGLGIPLAVDGDPRLVMLDIPHELAAIPWEWMQVHGRPLCMQAPLCRTVPGFNDASRGRPFFHSPLRVLLIGDALAESRQTRHPLPGTRMKPGKSANSSARPRSPTGSPCC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URX0</accession>
    <name>A0A0M2URX0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02479</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18818">
        <property type="protein sequence ID" value="KKO18818"/>
        <property type="gene ID" value="BROFUL_02479"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="36"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="81" mass="8935" checksum="4A09517B9EA3DD74" modified="2015-11-11" version="1">MHSLSMVPVNGCVHKLFYLAIASNSKPIARLHKARKLPSQRHETRETHFHGCTGSRSGYLTHKTGHEAVLTTFSAVLPKSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USK2</accession>
    <name>A0A0M2USK2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02224</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19043.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19043">
        <property type="protein sequence ID" value="KKO19043"/>
        <property type="gene ID" value="BROFUL_02224"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19043.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="42" mass="4692" checksum="611C22348891CA8E" modified="2015-11-11" version="1">MFGGIEGFKCCRHSPSETFEVRTKATLAKSELVRADKTGFKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USM1</accession>
    <name>A0A0M2USM1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">50S ribosomal protein L34</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02435</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial ribosomal protein bL34 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000232">
        <property type="protein sequence ID" value="KKO18842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18842">
        <property type="protein sequence ID" value="KKO18842"/>
        <property type="gene ID" value="BROFUL_02435"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000271">
        <property type="entry name" value="Ribosomal_L34"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00468">
        <property type="entry name" value="Ribosomal_L34"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="45" mass="5434" checksum="B3F0A0F4B63DC5E4" modified="2015-11-11" version="1">MKVNIRKSSIKHKKMCGFRKRMRTKGGRAILKRRRRIGRRPLLDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USM5</accession>
    <name>A0A0M2USM5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02440</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000232">
        <property type="protein sequence ID" value="KKO18847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18847">
        <property type="protein sequence ID" value="KKO18847"/>
        <property type="gene ID" value="BROFUL_02440"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="33" mass="4065" checksum="11E4A61421D818D8" modified="2015-11-11" version="1">MRTRDFKRENHIEKNYPVKNGTIIRQVFLEIAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USN3</accession>
    <name>A0A0M2USN3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_03284</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the LemA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000301">
        <property type="protein sequence ID" value="KKO18006.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18006">
        <property type="protein sequence ID" value="KKO18006"/>
        <property type="gene ID" value="BROFUL_03284"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4050"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1440.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023353">
        <property type="entry name" value="LemA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007156">
        <property type="entry name" value="MamQ_LemA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34478">
        <property type="entry name" value="PTHR34478"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04011">
        <property type="entry name" value="LemA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140478">
        <property type="entry name" value="SSF140478"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008854"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18006.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="203" mass="23444" checksum="5FCB27D6C6287A3D" modified="2015-11-11" version="1">MIFPILPDSVIKKGTFMKKILPAIALILFLGIIFAVWYIKGYNRVIALNENVKNAWAQVDTQLKRRYDLIPNLVETVKGYASHEKEIFENLAEARKGYFSAGTIEDKARSATQIEGFLSRLLMFRETYPELKANESFLKMQDTLEGSENRISVERKRYNDAVRELNTYIKGFYGRFFAARTGVTEGKYFEVTEAEKEVPKVKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USP4</accession>
    <name>A0A0M2USP4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">CRISPR-associated protein (Cas Cmr3)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02413</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000231">
        <property type="protein sequence ID" value="KKO18867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18867">
        <property type="protein sequence ID" value="KKO18867"/>
        <property type="gene ID" value="BROFUL_02413"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019117">
        <property type="entry name" value="CRISPR-assoc_protein_Cmr3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09700">
        <property type="entry name" value="Cas_Cmr3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="158" mass="18068" checksum="EF794157175D79E1" modified="2015-11-11" version="1">MYVSGIASDSLLEQKFGQTRETLISEMIKTKTFRMALLQHGIFEQGWIPFRQKEEKKNLFEADGLHLELLFAFTRPPLRVSGYSFEKNTKTTRQQGISLKPLKNAVPAGAVYLFRLPAATSDEAIRKFVQDYDNRKLKNTPYSSMGFNHVVLANGHRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USW8</accession>
    <name>A0A0M2USW8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Flagellar P-ring protein</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Basal body P-ring protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4 5" type="primary">flgI</name>
        <name evidence="5" type="ORF">BROFUL_02126</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 4">Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">The basal body constitutes a major portion of the flagellar organelle and consists of four rings (L,P,S, and M) mounted on a central rod.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 4">Bacterial flagellum basal body</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the FlgI family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19143.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19143">
        <property type="protein sequence ID" value="KKO19143"/>
        <property type="gene ID" value="BROFUL_02126"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2653"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009428">
        <property type="term" value="C:bacterial-type flagellum basal body, distal rod, P ring"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030288">
        <property type="term" value="C:outer membrane-bounded periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005198">
        <property type="term" value="F:structural molecule activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00416">
        <property type="entry name" value="FlgI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001782">
        <property type="entry name" value="Flag_FlgI"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30381">
        <property type="entry name" value="PTHR30381"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02119">
        <property type="entry name" value="FlgI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01010">
        <property type="entry name" value="FLGPRINGFLGI"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="5" id="KW-0966">Cell projection</keyword>
    <keyword evidence="5" id="KW-0969">Cilium</keyword>
    <keyword evidence="5" id="KW-0282">Flagellum</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002591"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19143.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="384" mass="41499" checksum="911DBF77BBBBDF50" modified="2015-11-11" version="1">MHRMKNKIHSMNMIFVYARIGFFLVVFSFLVPCVKSGNAAMRVKDIAYVKGVRDNQLYGYGLVVGLQGTGDSQIFRVTRQLAVNIFEKLGVLIAEADFLSKNIAAVTVTVNIPAFARPGDKLDVVVSSIGDSKSLEGGVLLQTALQGADNEVYAVAQGPLSIGGYNIEGQSQSVRKNISTTAYISNGAIVEKEIHFSILQDKSISVVLRDPDFTTANRLVEAIHAHYPNAARAIDAAVVTIVPPKEFQSEDAIIRFVASIEELYVKPDSIARVIINERTGTIVAGENVRISTVAVAHGNLSITITEKPEVSQPGAFSSGQTAIMPRTEIQAEEEENKLNIIQEGVTIADVARALNILGVTPRDLISIFQAIKRAGALHAELVIM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USY3</accession>
    <name>A0A0M2USY3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phosphoenolpyruvate carboxykinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02350</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18957.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18957">
        <property type="protein sequence ID" value="KKO18957"/>
        <property type="gene ID" value="BROFUL_02350"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004612">
        <property type="term" value="F:phosphoenolpyruvate carboxykinase (ATP) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.228.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001272">
        <property type="entry name" value="PEP_carboxykinase_ATP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013035">
        <property type="entry name" value="PEP_carboxykinase_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30031">
        <property type="entry name" value="PTHR30031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01293">
        <property type="entry name" value="PEPCK_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18957.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="551" mass="62270" checksum="893008186E108F07" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT71</accession>
    <name>A0A0M2UT71_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Phosphate-specific transport system accessory protein PhoU</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02223</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Plays a role in the regulation of phosphate uptake.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the PhoU family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19042">
        <property type="protein sequence ID" value="KKO19042"/>
        <property type="gene ID" value="BROFUL_02223"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2776"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030643">
        <property type="term" value="P:cellular phosphate ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045936">
        <property type="term" value="P:negative regulation of phosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006817">
        <property type="term" value="P:phosphate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.220">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028366">
        <property type="entry name" value="P_transport_PhoU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038078">
        <property type="entry name" value="PhoU-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026022">
        <property type="entry name" value="PhoU_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42930">
        <property type="entry name" value="PTHR42930"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01895">
        <property type="entry name" value="PhoU"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003107">
        <property type="entry name" value="PhoU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02135">
        <property type="entry name" value="phoU_full"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1" id="KW-0592">Phosphate transport</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="PhoU" evidence="2">
        <location>
            <begin position="16"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="domain" description="PhoU" evidence="2">
        <location>
            <begin position="119"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR003107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="224" mass="25327" checksum="E9AE08D54940E2E9" modified="2015-11-11" version="1">MERHFDQQLGLLRKNLIQMASLVETAIANAVKSLIERNSELARQVVKSDEQVDTLELELEKQCVDLLALQQPLAIDLRFITAAIKITNNLERMGDLAVNIAERVIPLNQEPQLKPLIDIPRMATITQTMVKDSIDAFVNKDTALARAVAERDSTVDSLNDQIFRELLTYMMQDPANITRAVHLILISRHLERIADHSTNIAEEVIYIVKAKVVKHRSTSLEEIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTD5</accession>
    <name>A0A0M2UTD5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02421</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000231">
        <property type="protein sequence ID" value="KKO18875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18875">
        <property type="protein sequence ID" value="KKO18875"/>
        <property type="gene ID" value="BROFUL_02421"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="34" mass="3937" checksum="D328A4B5701F1FCB" modified="2015-11-11" version="1">MGLPPTKRDETSQRDEQGYDDSLKRTQVGRIIFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTF9</accession>
    <name>A0A0M2UTF9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Putative polysaccharide biosynthesis polyprenyl glycosylphosphotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_02379</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial sugar transferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000228">
        <property type="protein sequence ID" value="KKO18900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18900">
        <property type="protein sequence ID" value="KKO18900"/>
        <property type="gene ID" value="BROFUL_02379"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003362">
        <property type="entry name" value="Bact_transf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017475">
        <property type="entry name" value="EPS_sugar_tfrase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02397">
        <property type="entry name" value="Bac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03025">
        <property type="entry name" value="EPS_sugtrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 9" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="29"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="63"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="231"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="domain" description="Bac_transf" evidence="8">
        <location>
            <begin position="226"/>
            <end position="413"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02397"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="427" mass="49157" checksum="9F02C2622CAC7722" modified="2015-11-11" version="1">MTIVAPLWIVSLSHAGMYRSLREKRLIDACWNIFEGSLLASIVFSVIAFFLKFEVISRTFITTFSLCILVTLVAEKCLILALLHHMRRRGYNSRTLLIAGSGKRARRFAHIIKTNPQWGFRIMGFIDEEERVGMKVGEYEVIGALKDLASILDNHAVSEVIFLLPRKWLAGLEVHIDTCEKVGVKATVAIDLFNTSVAKPKIKQLHGFPLLSLDATPYDVFHLLIKRFVDILVSLIVLVSSLPVFMMAVVAIKLTSPGPVFFRQIRCGLYGKPFTLYKFRTMIVDADKMLDKIRHLNESKGPVFHSRNDPRVTPAGRILRMMSLDELPQLFNVLKGDMSLIGPRPPIPDEVEKYERWQRRRLSFRPGIVCTWQVSNRFQPDFQKWMQMDLDYIDNWSLVLDLKILFKIFPALFRGLMYWHIQMEKGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTJ2</accession>
    <name>A0A0M2UTJ2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">50S ribosomal protein L29</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpmC</name>
        <name evidence="6" type="ORF">BROFUL_01915</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the universal ribosomal protein uL29 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19388.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19388">
        <property type="protein sequence ID" value="KKO19388"/>
        <property type="gene ID" value="BROFUL_01915"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.310">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00374">
        <property type="entry name" value="Ribosomal_L29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001854">
        <property type="entry name" value="Ribosomal_L29/L35"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036049">
        <property type="entry name" value="Ribosomal_L29/L35_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00831">
        <property type="entry name" value="Ribosomal_L29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46561">
        <property type="entry name" value="SSF46561"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00012">
        <property type="entry name" value="L29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00374"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19388.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="75" mass="8652" checksum="79D52BD26F2AD420" modified="2015-11-11" version="1">MKPIEIRSKSKQEILDEIDASRRSLLNMQFQWLAGETRNPAQRRDIKKSIARLKTVMREMELGIQPKSQGEGVGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTX2</accession>
    <name>A0A0M2UTX2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Putative glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_02236</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19055.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19055">
        <property type="protein sequence ID" value="KKO19055"/>
        <property type="gene ID" value="BROFUL_02236"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038731">
        <property type="entry name" value="RgtA/B/C-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13231">
        <property type="entry name" value="PMT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 10" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="98"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="121"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="147"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="178"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="220"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="269"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="306"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="329"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="362"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="394"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="420"/>
            <end position="441"/>
        </location>
    </feature>
    <feature type="domain" description="PMT_2" evidence="9">
        <location>
            <begin position="72"/>
            <end position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF13231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19055.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="546" mass="62595" checksum="B0F6BA0C7EBC2909" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTZ3</accession>
    <name>A0A0M2UTZ3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03400</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17949.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17949">
        <property type="protein sequence ID" value="KKO17949"/>
        <property type="gene ID" value="BROFUL_03400"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17949.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="48" mass="5586" checksum="1978D3AEDDE2B88A" modified="2015-11-11" version="1" fragment="single">MVAQPGTQRKGIMLKQKIAFFNELKDIDLARHSRNQISFMKAGRLLRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU02</accession>
    <name>A0A0M2UU02_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DNA-directed DNA polymerase</fullName>
            <ecNumber evidence="1">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_02826</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="1"/>
    <dbReference type="EMBL" id="LAQJ01000266">
        <property type="protein sequence ID" value="KKO18471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18471">
        <property type="protein sequence ID" value="KKO18471"/>
        <property type="gene ID" value="BROFUL_02826"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3497"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008408">
        <property type="term" value="F:3'-5' exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1600">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011708">
        <property type="entry name" value="DNA_pol3_alpha_NTPase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041931">
        <property type="entry name" value="DNA_pol3_alpha_thumb_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040982">
        <property type="entry name" value="DNA_pol3_finger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029460">
        <property type="entry name" value="DNAPol_HHH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004013">
        <property type="entry name" value="PHP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003141">
        <property type="entry name" value="Pol/His_phosphatase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016195">
        <property type="entry name" value="Pol/histidinol_Pase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004805">
        <property type="entry name" value="PolC_alpha"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32294">
        <property type="entry name" value="PTHR32294"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07733">
        <property type="entry name" value="DNA_pol3_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17657">
        <property type="entry name" value="DNA_pol3_finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14579">
        <property type="entry name" value="HHH_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02811">
        <property type="entry name" value="PHP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00481">
        <property type="entry name" value="POLIIIAc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89550">
        <property type="entry name" value="SSF89550"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00594">
        <property type="entry name" value="polc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0235">DNA replication</keyword>
    <keyword evidence="5" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="POLIIIAc" evidence="7">
        <location>
            <begin position="7"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00024632"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1156" mass="129893" checksum="C3E0AB762E0C646E" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU12</accession>
    <name>A0A0M2UU12_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">CRISPR-associated endonuclease Cas1</fullName>
            <ecNumber evidence="8">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">cas1</name>
        <name evidence="9" type="ORF">BROFUL_02204</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="8">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer, forms a heterotetramer with a Cas2 homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the CRISPR-associated endonuclease Cas1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000220">
        <property type="protein sequence ID" value="KKO19090.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19090">
        <property type="protein sequence ID" value="KKO19090"/>
        <property type="gene ID" value="BROFUL_02204"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043571">
        <property type="term" value="P:maintenance of CRISPR repeat elements"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.100.10.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01470">
        <property type="entry name" value="Cas1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002729">
        <property type="entry name" value="CRISPR-assoc_Cas1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042206">
        <property type="entry name" value="CRISPR-assoc_Cas1_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042211">
        <property type="entry name" value="CRISPR-assoc_Cas1_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01867">
        <property type="entry name" value="Cas_Cas1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00287">
        <property type="entry name" value="cas1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="7 8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3 8" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8" id="KW-0464">Manganese</keyword>
    <keyword evidence="2 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1 8" id="KW-0540">Nuclease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="8">
        <location>
            <position position="156"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="221"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="236"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19090.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="329" mass="37560" checksum="D3B3D8C9CEC122FF" modified="2015-11-11" version="1">MGIVYIIEQGATITKADGRLVVRKDSRVLEDMPSKDVERLVIFGNVHITTPAMKYLLESGADVSFFSIHGNYKGRLQPRLCSDAELRRLQYQKSSHRETCLEVSKAFVSAKLRNMETFLKRQKRKTAQALSALDTIKQGLLDIQNVPDIHSLRGYEGSSSARYYKALSSLLQKDFQFQKRTRRPPADEANVLLSLGYTLLFNRVYGALNVVGLDPYQGMYHLADRGHATLASDFMEEFRVLIVDSVVLLLVNTREITVKDFSHSQGNIMLTHDGLKKALSRFEDKMNTVIMHTRISMRVSYQQCIEIQARQFARFIRGHDTAYMPFVLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUD3</accession>
    <name>A0A0M2UUD3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PKD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01857</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000191">
        <property type="protein sequence ID" value="KKO19442.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19442">
        <property type="protein sequence ID" value="KKO19442"/>
        <property type="gene ID" value="BROFUL_01857"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2313"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.115.10.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1220">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014755">
        <property type="entry name" value="Cu-Rt/internalin_Ig-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023296">
        <property type="entry name" value="Glyco_hydro_beta-prop_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000601">
        <property type="entry name" value="PKD_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035986">
        <property type="entry name" value="PKD_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032812">
        <property type="entry name" value="SbsA_Ig"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13205">
        <property type="entry name" value="Big_5"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49299">
        <property type="entry name" value="SSF49299"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75005">
        <property type="entry name" value="SSF75005"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50093">
        <property type="entry name" value="PKD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="PKD" evidence="2">
        <location>
            <begin position="547"/>
            <end position="590"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19442.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="625" mass="67315" checksum="EAC39085428F50CD" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUD7</accession>
    <name>A0A0M2UUD7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01636</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000170">
        <property type="protein sequence ID" value="KKO19658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19658">
        <property type="protein sequence ID" value="KKO19658"/>
        <property type="gene ID" value="BROFUL_01636"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="54" mass="6351" checksum="BB04DB0BAC4887CB" modified="2015-11-11" version="1">MNLNSFLFFVGITLDYSLVSLYDVSVLKFMQRILVVTPKRVLSYVKIKRKMECC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUG4</accession>
    <name>A0A0M2UUG4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03211</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000293">
        <property type="protein sequence ID" value="KKO18109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18109">
        <property type="protein sequence ID" value="KKO18109"/>
        <property type="gene ID" value="BROFUL_03211"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3957"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027612">
        <property type="entry name" value="Put_MTase_LIC12133"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04325">
        <property type="entry name" value="MTase_LIC12133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="343" mass="39442" checksum="21DF60FB2AA94DE3" modified="2015-11-11" version="1">MIHNNGNDGSGTHCSATDIFNTTIAKKPIRIEHIPIVENESALKIFEDYFRTNTFSSVSLSGKIFGKVSKICKKTTIAQIIREITPPVIFRIYKNKAAKYGFFGNYPDWEAAKKASAGYDSEIILKKVTDALLKVKNGEASGERDSVLFDKVQYSWPLLAGLLWIASRNNNRLTLLDFGGSLGTSYFQNKLFLSHVSELKWCIVEQEHFVQVGKKFFENDNLKFYFDFKECVIKENPQAILLSSVLQYIPYPYALLETIIKNRFEHIIIDRTPFLQRGGDRIAVQKVPPEIYDASYPVWFFNLTNFLNLFSEKYQLIVDFESTDKSNIQFSSFMGFIFELKNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUG7</accession>
    <name>A0A0M2UUG7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Two-component sensor kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01586</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000168">
        <property type="protein sequence ID" value="KKO19698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19698">
        <property type="protein sequence ID" value="KKO19698"/>
        <property type="gene ID" value="BROFUL_01586"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="321"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="360"/>
            <end position="379"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="435"/>
            <end position="462"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="462" mass="52189" checksum="DE9948DBE0497021" modified="2015-11-11" version="1">MVILTFMLFGLLPLVLFRLMAFPKASAELKHGVKNNLKSFLNKQIDLLTLLQQEKESHARTISDAILSTLLIHGDEKFANLVNGKNVHEYLRLKTLLECIKADYGYKGIFICDSASIIQVATENEISMLGKNITKEMAFLNIQKTLEDGKTIFSNVIHFSYSAYSDDIKDEKGGDVPSVFLSYPIKDENRVVIGGVVLWMDISVLNQVMKNVVFGETGEAYLVNQEGIMITQSRFSELIKNTGDTCKTCHVVEDPDSQMITKGVKKCITGKTTGYDLKGYRDYGGLQVVGAWSWLKDFDMGLIVELDADEAFSALNNINSMTKSLMIAMLIPAFAMAILTYRKLSAGYMLKNLSLPQKTLLGVTIIFTVGFIIAILDGYELRRERGYLREQKFEIRNPFKTFGSFVAQRDEDFIKNKISEFKKELPIFKAEDTSYPEDKKKEVDESKANQSSEKSEKTWELK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUI6</accession>
    <name>A0A0M2UUI6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01566</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000164">
        <property type="protein sequence ID" value="KKO19718.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19718">
        <property type="protein sequence ID" value="KKO19718"/>
        <property type="gene ID" value="BROFUL_01566"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="16"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19718.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="162" mass="18306" checksum="287A800EBE014E4A" modified="2015-11-11" version="1">MTTDQQSIITKTQSKVVLLVEDNQDDAELILRAFKKYHIMNEVVITSDGTEALEYLFGDGRHAGRDIGKLPEVVLLDLKLPKVDGLEVLQRLRSDERTKHLPVVILTSSSEERDVVNGYKFGANSYVQKPVDFTQFSEAVGRLAIYWLLLNKSPDTRGEDNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUL1</accession>
    <name>A0A0M2UUL1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01784</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000186">
        <property type="protein sequence ID" value="KKO19507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19507">
        <property type="protein sequence ID" value="KKO19507"/>
        <property type="gene ID" value="BROFUL_01784"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="19"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="99" mass="11301" checksum="84E8B875E8EE084C" modified="2015-11-11" version="1">MNEAKNTNPGGKSSKRPISGQKPSDKKPQKERLKQPDIRTKSGEEMNPALSLAKKIDDMIGEIELRPIKSFEKNEQGRLLQAYEKLISRVVREINNSRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUL5</accession>
    <name>A0A0M2UUL5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01555</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000162">
        <property type="protein sequence ID" value="KKO19733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19733">
        <property type="protein sequence ID" value="KKO19733"/>
        <property type="gene ID" value="BROFUL_01555"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009116">
        <property type="term" value="P:nucleoside metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035994">
        <property type="entry name" value="Nucleoside_phosphorylase_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53167">
        <property type="entry name" value="SSF53167"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="181" mass="19745" checksum="06785AE5D9A4ED85" modified="2015-11-11" version="1">MKLLIVAATFPEIKPLVLSLGEDKTNEPGIKTIHYRQASIDILITGVGLMHTAYFMGKVLANNAYNLALQFGIAGSFRKDLAPGVTVNVVEEVVADFGAEDKENFLDAAELSLLPPDQFPYHAGKLMNTIPDSAHGASGLKKAKGISVNKVHGYQDSIDRIIKNISLILKAWKERHFFTPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUQ1</accession>
    <name>A0A0M2UUQ1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01526</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the HepT RNase toxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000157">
        <property type="protein sequence ID" value="KKO19768.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19768">
        <property type="protein sequence ID" value="KKO19768"/>
        <property type="gene ID" value="BROFUL_01526"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0110001">
        <property type="term" value="C:toxin-antitoxin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008201">
        <property type="entry name" value="HepT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037038">
        <property type="entry name" value="HepT-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01934">
        <property type="entry name" value="DUF86"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-1277">Toxin-antitoxin system</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00024207"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19768.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="145" mass="17484" checksum="29994164D4EF583C" modified="2015-11-11" version="1" fragment="single">QLYIGGLFSGLHLTTLLKFLTNELADWNIYLELSWDEYQNDRVRRRSSEHWRENIVNASIDVVRILLASEKKSLPGTYREVLRSFMSFHEFDKNTVERSCEFARLRNIITHEYLDIRWEEIRNFVKNARPLFEYTIEYVKKNFSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUW0</accession>
    <name>A0A0M2UUW0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Lipoyl-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01471</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000150">
        <property type="protein sequence ID" value="KKO19828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19828">
        <property type="protein sequence ID" value="KKO19828"/>
        <property type="gene ID" value="BROFUL_01471"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1817"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003016">
        <property type="entry name" value="2-oxoA_DH_lipoyl-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00364">
        <property type="entry name" value="Biotin_lipoyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00189">
        <property type="entry name" value="LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0450">Lipoyl</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lipoyl-binding" evidence="3">
        <location>
            <begin position="2"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="77"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="109" mass="12316" checksum="9AB66D7AB090E304" modified="2015-11-11" version="1">MRVEVELPEVGGNNGDEATVSFWYVEEDEEVEEGEDLVEMITEKTTFNVPAPVSGRLLEILAQEGDVVKVGDIMAILETEEDEDEEEEDEDEDEDEDEGDEDDNEDDDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUX5</accession>
    <name>A0A0M2UUX5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01450</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000147">
        <property type="protein sequence ID" value="KKO19848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19848">
        <property type="protein sequence ID" value="KKO19848"/>
        <property type="gene ID" value="BROFUL_01450"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="100" mass="10879" checksum="1237926E8CB022E1" modified="2015-11-11" version="1">MLIHNSWDGYAAIKSPFVMGEGGCKKIYLNAFVLGNTMKGGILQQIQRTVFMAGGLMTIGCGTLDRAKMSNLNLICQNVSSKEILAKVVVRQSKKNSLNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUY9</accession>
    <name>A0A0M2UUY9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphosulfolactate synthase</fullName>
            <ecNumber evidence="2">4.4.1.19</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">yitD</name>
        <name evidence="2" type="ORF">BROFUL_01422</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the phosphosulfolactate synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.4.1.19" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000146">
        <property type="protein sequence ID" value="KKO19863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19863">
        <property type="protein sequence ID" value="KKO19863"/>
        <property type="gene ID" value="BROFUL_01422"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1754"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043817">
        <property type="term" value="F:phosphosulfolactate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003830">
        <property type="entry name" value="ComA_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036112">
        <property type="entry name" value="ComA_synth_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02679">
        <property type="entry name" value="ComA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102110">
        <property type="entry name" value="SSF102110"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010424"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="280" mass="31418" checksum="D902E83DCE2C2C9F" modified="2015-11-11" version="1">MAQLTTNDQERAFSFLRINKRQSKPRSQGVTEIRGPYYTPMGRNYLCDVLGTMGTYIDTLKFAGGSFTLMPRRVVKEIIDLCHAHKVRVSTGGFIEYVLTQGNEAVNYYLQECKDLGFDIIEISSGFITVPTEDLLRLVEKVLNAGLIAKPEVGIQFGSGGASAAEELEAEGTRDPEWAILQARRFLEAGAYMIMIESEGITENVKTWRTDVVARIIHALGLEKVMFEAADPDVFSWYIKNYGPEVNLFVDHSQIVQLESLRSGIWGTKSLWGRVLTYKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUZ1</accession>
    <name>A0A0M2UUZ1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">UDP-N-acetylglucosamine 1-carboxyvinyltransferase</fullName>
            <ecNumber evidence="7">2.5.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Enoylpyruvate transferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">UDP-N-acetylglucosamine enolpyruvyl transferase</fullName>
            <shortName evidence="7">EPT</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">murA</name>
        <name evidence="9" type="ORF">BROFUL_03036</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Cell wall formation. Adds enolpyruvyl to UDP-N-acetylglucosamine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>phosphoenolpyruvate + UDP-N-acetyl-alpha-D-glucosamine = phosphate + UDP-N-acetyl-3-O-(1-carboxyvinyl)-alpha-D-glucosamine</text>
            <dbReference type="Rhea" id="RHEA:18681"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:68483"/>
            <dbReference type="EC" id="2.5.1.7"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the EPSP synthase family. MurA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.7" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18309.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18309">
        <property type="protein sequence ID" value="KKO18309"/>
        <property type="gene ID" value="BROFUL_03036"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3748"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008760">
        <property type="term" value="F:UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019277">
        <property type="term" value="P:UDP-N-acetylgalactosamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01555">
        <property type="entry name" value="UdpNAET"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.65.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00111">
        <property type="entry name" value="MurA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001986">
        <property type="entry name" value="Enolpyruvate_Tfrase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036968">
        <property type="entry name" value="Enolpyruvate_Tfrase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013792">
        <property type="entry name" value="RNA3'P_cycl/enolpyr_Trfase_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005750">
        <property type="entry name" value="UDP_GlcNAc_COvinyl_MurA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00275">
        <property type="entry name" value="EPSP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55205">
        <property type="entry name" value="SSF55205"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01072">
        <property type="entry name" value="murA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="1 7" id="KW-0132">Cell division</keyword>
    <keyword evidence="3 7" id="KW-0133">Cell shape</keyword>
    <keyword evidence="6 7" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 7" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="7" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 7 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="EPSP_synthase" evidence="8">
        <location>
            <begin position="7"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphoenolpyruvate binding" evidence="7">
        <location>
            <begin position="22"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="UDP-N-acetylglucosamine binding" evidence="7">
        <location>
            <begin position="125"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="7">
        <location>
            <position position="120"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="96"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="309"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="331"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="2-(S-cysteinyl)pyruvic acid O-phosphothioketal" evidence="7">
        <location>
            <position position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18309.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="422" mass="45482" checksum="7EAD214489778F25" modified="2015-11-11" version="1">MDKIVIEGENRLEGRVRINGAKNAALPIMAACILLDGPSRIKGIPDIIDIQTQSEILRNLGGGVKKTEDGTIEIIFRDGENDDKFTAPYELVRKMRASICVLGPLLSKRRRAKVSYPGGCVIGQRPIDLHIKGLAALGAQIETTEGYINASVDKLKGTHISFAGKTVLGTCNVLTAAVLAEGITTIEYAACEPEVQDLAHFLNKAGAKITGIGENKLTVEGVQKLHGVDYEIIPDRIEAGTIMIAGAITRGDIVLENARLEHLSAIIDKLREIGVEITPSGNNTLRVKGNGAYHAVDLMTLPYPGMPTDMQAQFMALLCIAEGKSIITEKIFPDRFIHAAELRRMGADIRVDGPSAIIRGIPFLSGTEVMVSDLRAGAGLVLAGLVAKGTTQIHRIYHLDRGYERLAERLSVLGATIKRISE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV43</accession>
    <name>A0A0M2UV43_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01609</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19677.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19677">
        <property type="protein sequence ID" value="KKO19677"/>
        <property type="gene ID" value="BROFUL_01609"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19677.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="74" mass="8381" checksum="8F21F9096E443C23" modified="2015-11-11" version="1">MKAIKKLAKVEKDKSITIKLLPFKPGSKVEVIVFPAGKEEDVFSFMDKVVKEKKIAPMSLKQIEKIVHESRAVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV55</accession>
    <name>A0A0M2UV55_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC transporter permease component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_01624</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19692.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19692">
        <property type="protein sequence ID" value="KKO19692"/>
        <property type="gene ID" value="BROFUL_01624"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032688">
        <property type="entry name" value="ABC2_membrane_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12679">
        <property type="entry name" value="ABC2_membrane_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="54"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="93"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="127"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="159"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="212"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19692.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="236" mass="26332" checksum="4E5A70F005FA9826" modified="2015-11-11" version="1">MTSVGTIFQREVNAYFLSPIAYVVIAVFTVFSGYFFSIMLGITQESTLRYSLAYTQFILSILAPVITMRLMAEENKTGTIEPLMTAPVTDFEVVFGKFLAAWALYNVMIAPTAFYIIFLAWVGSPDYGAIIASYIGLILMGGLFTSIGLLVSAVTKNQIVAAVIGIVALLILLVIGLASTEHEGWFYNALKYIGTYDHWDTFTKGIIDTRDVIYYVSFTALLIFIVVRIVESRRWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV56</accession>
    <name>A0A0M2UV56_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02890</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18384">
        <property type="protein sequence ID" value="KKO18384"/>
        <property type="gene ID" value="BROFUL_02890"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="164" mass="18514" checksum="CB887B325B0232E9" modified="2015-11-11" version="1">MSVKKKVVKFLGNLSQDELYEARNCIDTLICNQGEPAIKPHKGKQKTADAFSDMMRQERFYHIFTCKFKKVNELKKPASIGTVVDISKSGLRLKTKNNHITVGNLLVIFPGKKAEASILAISPEYDHDGNKIFAEVTRVKELLEMSELGCKFLPRKSLLFDLVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV68</accession>
    <name>A0A0M2UV68_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glucose-1-phosphate thymidylyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01579</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000166">
        <property type="protein sequence ID" value="KKO19707.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19707">
        <property type="protein sequence ID" value="KKO19707"/>
        <property type="gene ID" value="BROFUL_01579"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005835">
        <property type="entry name" value="NTP_transferase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00483">
        <property type="entry name" value="NTP_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NTP_transferase" evidence="1">
        <location>
            <begin position="4"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19707.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="70" mass="7708" checksum="18E4D2AA302AEC88" modified="2015-11-11" version="1">MIQAIILAAGKSTRTWPLTLTKPKPLLKVMNKEILKHNLDALQGLVNEVIVIVGFKKEMIINEIGLNTGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVB4</accession>
    <name>A0A0M2UVB4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01267</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO19998.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19998">
        <property type="protein sequence ID" value="KKO19998"/>
        <property type="gene ID" value="BROFUL_01267"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19998.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="89" mass="10369" checksum="B93A5889F5AC0AC3" modified="2015-11-11" version="1">MSVQQKEKSKRKAQRKYNEKNLSLKNVYTDKAERSCLMCGKKFISRGPHNRRCPRCNQKIDQAAENTFYMPTVYNNDGSSAGEFIQIPY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVC6</accession>
    <name>A0A0M2UVC6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02334</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18941">
        <property type="protein sequence ID" value="KKO18941"/>
        <property type="gene ID" value="BROFUL_02334"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2899"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008658">
        <property type="term" value="F:penicillin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005311">
        <property type="entry name" value="PBP_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036138">
        <property type="entry name" value="PBP_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001460">
        <property type="entry name" value="PCN-bd_Tpept"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03717">
        <property type="entry name" value="PBP_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00905">
        <property type="entry name" value="Transpeptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56519">
        <property type="entry name" value="SSF56519"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PBP_dimer" evidence="3">
        <location>
            <begin position="53"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="domain" description="Transpeptidase" evidence="2">
        <location>
            <begin position="242"/>
            <end position="551"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="570" mass="63763" checksum="9FC78D79C4D5F3F0" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVG5</accession>
    <name>A0A0M2UVG5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01714</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000177">
        <property type="protein sequence ID" value="KKO19570.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19570">
        <property type="protein sequence ID" value="KKO19570"/>
        <property type="gene ID" value="BROFUL_01714"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19570.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="49" mass="5841" checksum="4143CA206E35EB96" modified="2015-11-11" version="1" fragment="single">MNHEETRKSVVPSGGLHGIEVRPIRREERTRWDELMRQYHYLGLHSLIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVN4</accession>
    <name>A0A0M2UVN4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Sulfate adenylyltransferase</fullName>
            <ecNumber evidence="7">2.7.7.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">ATP-sulfurylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Sulfate adenylate transferase</fullName>
            <shortName evidence="7">SAT</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">sat</name>
        <name evidence="10" type="ORF">BROFUL_02232</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>ATP + H(+) + sulfate = adenosine 5'-phosphosulfate + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:18133"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16189"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58243"/>
            <dbReference type="EC" id="2.7.7.4"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Sulfur metabolism; hydrogen sulfide biosynthesis; sulfite from sulfate: step 1/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the sulfate adenylyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.4" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19051.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19051">
        <property type="protein sequence ID" value="KKO19051"/>
        <property type="gene ID" value="BROFUL_02232"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2787"/>
    <dbReference type="UniPathway" id="UPA00140">
        <property type="reaction ID" value="UER00204"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004781">
        <property type="term" value="F:sulfate adenylyltransferase (ATP) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070814">
        <property type="term" value="P:hydrogen sulfide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000103">
        <property type="term" value="P:sulfate assimilation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00517">
        <property type="entry name" value="ATPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00066">
        <property type="entry name" value="Sulf_adenylyltr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025980">
        <property type="entry name" value="ATP-Sase_PUA-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020792">
        <property type="entry name" value="SO4_adenylyltransferase_pro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024951">
        <property type="entry name" value="Sulfurylase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002650">
        <property type="entry name" value="Sulphate_adenylyltransferase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01747">
        <property type="entry name" value="ATP-sulfurylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14306">
        <property type="entry name" value="PUA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="SSF88697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00339">
        <property type="entry name" value="sopT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 7 10" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PUA_2" evidence="9">
        <location>
            <begin position="5"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-sulfurylase" evidence="8">
        <location>
            <begin position="174"/>
            <end position="383"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000262"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00066"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF14306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19051.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="389" mass="44072" checksum="60705EFFF45FAAA8" modified="2015-11-11" version="1">MVKNIAPHGGKLIQRVVSMEQREILLDKATHYDMKKIQLNSREMSDLDMIAVGAMSPLEGFMCKADYDNVVDNMRLANGLPWSIPIVLSATKEETEGLKPGKDVALTDQANEVIAILHLEEIFHHDKHKESLEVYGVDDRKHPGVDYVYNMAEYLLGGKVSVVNRTKPSDFSLYRLDPQETRDTFVKRGWRRVVGFQTRNPVHRAHEYIQKCALEIVDAILLHPLVGETKSDDVPADVRIRSYEVLLQNYYPKDRAMLAVFPAAMRYAGPREAVFHAIVRKNYGCTHFIVGRDHAGVGSYYGTFDAHYIFDEFDPQEIGITPLFFDHTFYCKACNGMASYKTCPHDSSNHVILSGTEVRKMLGAGQAPPPTFTRAEIAKVLSDYYQKLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVS8</accession>
    <name>A0A0M2UVS8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01607</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19675.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19675">
        <property type="protein sequence ID" value="KKO19675"/>
        <property type="gene ID" value="BROFUL_01607"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19675.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="344" mass="40276" checksum="D33DF1B4AC0C1414" modified="2015-11-11" version="1">MDKLNELIGNLDNLPKPSFDTVLEYLSSAAITQLPEIERLPIWSSLTKFTRKHRRFSSAKWTLDDESVSRIEATANRLTPNSPEILYRNLFSSRDFDLYEENDNWKEQRKKLDERRQKAIQEIINASGIQGVMEFVDAIESPSMVGWTMGTITPNTIDPVLLPEYLDVKNIKYQQFAGGFVWSRYQQQGWQWVDCLDRTNWSLMQICQFLMHLPFEVNTWCRANNWLGDSESMYWQKVTVNPHQSDSDLLLAIDKLLSVARPQAAIDCLYYRFYKKLPLDRKRTVKALMDAVSVKELVNMETYHITELIKALQNDSETEEDDLSRIEWLICHYWTDIVKPSPNC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVY0</accession>
    <name>A0A0M2UVY0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02164</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000214">
        <property type="protein sequence ID" value="KKO19121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19121">
        <property type="protein sequence ID" value="KKO19121"/>
        <property type="gene ID" value="BROFUL_02164"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006439">
        <property type="entry name" value="HAD-SF_hydro_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041492">
        <property type="entry name" value="HAD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13419">
        <property type="entry name" value="HAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00413">
        <property type="entry name" value="HADHALOGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01549">
        <property type="entry name" value="HAD-SF-IA-v1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="248" mass="28394" checksum="1A76E2645348C0AD" modified="2015-11-11" version="1">MFRFLFSIADVMQNSLNVKALIFDLDDTLYDCSGTLVLQGRKHAAKMIARLIHCSEEEAYHLQMKMEEQYGTNANIYEKIVAMHYLPNACVNALWEEFIHIDIVGIALFPGVIETLKQLKAQGYKLILVTSGEKKIQNKKIHALGLKHNYFDDIFIADRINGQTKNANFKEIIQRYYLRPEEIVCIGDKIDDELTAGKSLGMITVMVEHGRHYRAYLKGQDKYSKPDYSIKQIKDILGITNASSLITR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVY2</accession>
    <name>A0A0M2UVY2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">1,4-dihydroxy-6-naphtoate synthase</fullName>
            <ecNumber evidence="3">4.1.-.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Menaquinone biosynthetic enzyme MqnD</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">mqnD</name>
        <name evidence="4" type="ORF">BROFUL_01557</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2).</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 3">Quinol/quinone metabolism; menaquinone biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the MqnA/MqnD family. MqnD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.-.-" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000162">
        <property type="protein sequence ID" value="KKO19735.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19735">
        <property type="protein sequence ID" value="KKO19735"/>
        <property type="gene ID" value="BROFUL_01557"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1920"/>
    <dbReference type="UniPathway" id="UPA00079"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016830">
        <property type="term" value="F:carbon-carbon lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009234">
        <property type="term" value="P:menaquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00996">
        <property type="entry name" value="MqnD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003773">
        <property type="entry name" value="Menaquinone_biosynth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030869">
        <property type="entry name" value="MqnD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37167">
        <property type="entry name" value="PTHR37167"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02621">
        <property type="entry name" value="VitK2_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-0474">Menaquinone biosynthesis</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="3">
        <location>
            <begin position="55"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="3">
        <location>
            <begin position="109"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00996"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19735.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="277" mass="31088" checksum="FF4DE2E35C0789C6" modified="2015-11-11" version="1">MTLTLGISPCPNDTFIFDAMVHKKIDTEGLSFELIINDVEKLNLLALQHTLDITKLSYYAYAHAINKYVVLDAGSALGKNCGPLLIAKPEYQKRDIGNLVVAIPGKYTTAHFLLSMAFPRVKNKVEMPFSEIENALVHDRVNAGVIIHENRFTYQDKGLVKIMDLGEYWETQTGLPIPLGGIAIKRSISAKIAQTVNRIVRKSVEYALAHPAASREFVGRYAQEMDENIRNQHIQLYVNHYSVDLGNPGRQAVTALFAWAQKNKLLTDIHEDIFLLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW01</accession>
    <name>A0A0M2UW01_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter permease component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_01299</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the ABC-3 integral membrane protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20027">
        <property type="protein sequence ID" value="KKO20027"/>
        <property type="gene ID" value="BROFUL_01299"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037294">
        <property type="entry name" value="ABC_BtuC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001626">
        <property type="entry name" value="ABC_TroCD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30477">
        <property type="entry name" value="PTHR30477"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00950">
        <property type="entry name" value="ABC-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81345">
        <property type="entry name" value="SSF81345"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="18"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="44"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="77"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="109"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="148"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="188"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="233"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="267"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="288" mass="32003" checksum="622BE25569AB08FD" modified="2015-11-11" version="1">MEQFLEILSPQFLLKNSLYAGLIVGFVCPQVGIFFVLRRMVLLGIALPQVSNAGITFAFLLHTIGFHFLPHMESEKFMALTGSVTFTLVAIFILAVLERRRKGFTENRIGFTYSIAGAVSILFVSWNPYGQTEVLSLLKGEIVSIPDIYLWLMLAIYGAVFLCLVGFHRSFIVVSYDSDMATTIGKKVIIWDVLLYLIIGVVISFGVMTVGPLVIFGFLLIPAITARMITRGIFLFCVVSSIIGVVAAFFGFYLSYRFDLPTGPTDVVVLSAILLLSFLGKMVFSWKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW15</accession>
    <name>A0A0M2UW15_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NAD-dependent epimerase/dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02139</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19156">
        <property type="protein sequence ID" value="KKO19156"/>
        <property type="gene ID" value="BROFUL_02139"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2668"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Epimerase" evidence="1">
        <location>
            <begin position="2"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="238" mass="27294" checksum="4C57C293C0E3C211" modified="2015-11-11" version="1">MNFNILEAGRRCNIKKIVMTLTTGMYPENAPLPLKEEYIHNGHPHESNYGSSFAKRLVDPAVKAYRAEYGLNIIGLVPNGIFGENDNFNYDDAPMVPTLIRRFYENRHGNSKIVIWGDGTPLREYTYAKDVARAFMWCLNHYNDAQILNIGTTEELSVKEIAYLIAGFLNIDTSRIEFDTTKSNGIFKKSVDNSRFISISKFQYTSFKAGLENTIRWFCDTYQKSPESIRMKGKSRIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW74</accession>
    <name>A0A0M2UW74_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Fructose-1,6-bisphosphatase class 1</fullName>
            <shortName evidence="5">FBPase class 1</shortName>
            <ecNumber evidence="5">3.1.3.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">fbp</name>
        <name evidence="9" type="ORF">BROFUL_00950</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>beta-D-fructose 1,6-bisphosphate + H2O = beta-D-fructose 6-phosphate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:11064"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:32966"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57634"/>
            <dbReference type="EC" id="3.1.3.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="5">Binds 2 magnesium ions per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 5 6">Belongs to the FBPase class 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.11" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000116">
        <property type="protein sequence ID" value="KKO20318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20318">
        <property type="protein sequence ID" value="KKO20318"/>
        <property type="gene ID" value="BROFUL_00950"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1197"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042132">
        <property type="term" value="F:fructose 1,6-bisphosphate 1-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016051">
        <property type="term" value="P:carbohydrate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00354">
        <property type="entry name" value="FBPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01855">
        <property type="entry name" value="FBPase_class1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044015">
        <property type="entry name" value="FBPase_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000146">
        <property type="entry name" value="FBPase_class-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033391">
        <property type="entry name" value="FBPase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028343">
        <property type="entry name" value="FBPtase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11556">
        <property type="entry name" value="PTHR11556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00316">
        <property type="entry name" value="FBPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18913">
        <property type="entry name" value="FBPase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF500210">
        <property type="entry name" value="FBPtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000904">
        <property type="entry name" value="FBPtase_SBPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00115">
        <property type="entry name" value="F16BPHPHTASE"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 6" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FBPase" evidence="7">
        <location>
            <begin position="7"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="domain" description="FBPase_C" evidence="8">
        <location>
            <begin position="201"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="119"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="94"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="116"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="118"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="119"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="211"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="244"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="277"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="283"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000508"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF18913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="337" mass="37721" checksum="5E1771BDDB0A7987" modified="2015-11-11" version="1">MQKNKGITIQRHIVEQERLFPQATGDFTGLLWDLSIAAKIISREVNKAGLAEILGLTGEVNIHGEAVKKLDVFANERICKSMEHGGHLCIMASEENDDVITIPEEFPRGKYVLMFDPLDGSSNIDANVSVGTIFSVYRRKTTGKEATIEDCLRKGTEQIAAGYIVYGSSTMMVYTTGQGVYGFTLDPSIGEFLLSHENIKIAAKGRTYSINEGNTHTWDEGTRRYIRYLKESDPSTGRPYSLRYIGSLVADFHRNLLYGGIFLYPADYKDPKKPKPKLRLLYEANPLAFIVEQAGGMASTGEERIMDIQASDLHQKVPLIIGSREDVLAYEKYFEQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW82</accession>
    <name>A0A0M2UW82_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative peptidyl-prolyl cis-trans isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00960</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000116">
        <property type="protein sequence ID" value="KKO20328.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20328">
        <property type="protein sequence ID" value="KKO20328"/>
        <property type="gene ID" value="BROFUL_00960"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1208"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046357">
        <property type="entry name" value="PPIase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000297">
        <property type="entry name" value="PPIase_PpiC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023058">
        <property type="entry name" value="PPIase_PpiC_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027304">
        <property type="entry name" value="Trigger_fact/SurA_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109998">
        <property type="entry name" value="SSF109998"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01096">
        <property type="entry name" value="PPIC_PPIASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50198">
        <property type="entry name" value="PPIC_PPIASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 5" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0697">Rotamase</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5007777990" evidence="3">
        <location>
            <begin position="26"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="domain" description="PpiC" evidence="4">
        <location>
            <begin position="220"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="29"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="32"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20328.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="364" mass="39978" checksum="86BE53097AE5985E" modified="2015-11-11" version="1">MLKGCIKPLGMVLCGILCIQVSAFSAEPDAKKTSAPAKEEKPAAKTEAKAEAKTETSKGEVKSAIKESTPKEAAPGTKEQDPNKILATVNGENILQKDVNHILSRFGNQIPAEQIQGVTKQVLDGLITQKLLTQFIRENKIEPSKTDIETEINKVREDIKANPSLAGQTLEQVLESHGSSLDDLKRDITISLSLEKYLGKDLDDKKLKAYFDQNKAAYNGTEVRASHILVDTRKMTSDAELNQAMEKIKKAKAEVAAGKDFAELAKQYSDCPSKEKGGDLGFFPRKGQMVEPFAAAAFALKVGQISDPVKTNFGYHIIKVTEIKQGTDVKFDDIKQNIKQDLLQEKAQVLITQIRQKAKIDIKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWA3</accession>
    <name>A0A0M2UWA3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">ATP-dependent zinc metalloprotease FtsH</fullName>
            <ecNumber evidence="5">3.4.24.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">ftsH</name>
        <name evidence="8" type="ORF">BROFUL_00910</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="5">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homohexamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
            <orientation evidence="5">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the AAA ATPase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">In the C-terminal section; belongs to the peptidase M41 family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">In the central section; belongs to the AAA ATPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.24.-" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000110">
        <property type="protein sequence ID" value="KKO20353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20353">
        <property type="protein sequence ID" value="KKO20353"/>
        <property type="gene ID" value="BROFUL_00910"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1147"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030163">
        <property type="term" value="P:protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.760">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01458">
        <property type="entry name" value="FtsH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041569">
        <property type="entry name" value="AAA_lid_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003960">
        <property type="entry name" value="ATPase_AAA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005936">
        <property type="entry name" value="FtsH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011546">
        <property type="entry name" value="Pept_M41_FtsH_extracell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000642">
        <property type="entry name" value="Peptidase_M41"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037219">
        <property type="entry name" value="Peptidase_M41-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17862">
        <property type="entry name" value="AAA_lid_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06480">
        <property type="entry name" value="FtsH_ext"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01434">
        <property type="entry name" value="Peptidase_M41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140990">
        <property type="entry name" value="SSF140990"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01241">
        <property type="entry name" value="FtsH_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00674">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 5" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="5 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 5" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="114"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="domain" description="AAA" evidence="7">
        <location>
            <begin position="197"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="active site" evidence="5">
        <location>
            <position position="428"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="205"/>
            <end position="212"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="427"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="431"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="504"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="646" mass="71844" checksum="CD23983FBC54BA41" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWL4</accession>
    <name>A0A0M2UWL4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02400</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000229">
        <property type="protein sequence ID" value="KKO18899.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18899">
        <property type="protein sequence ID" value="KKO18899"/>
        <property type="gene ID" value="BROFUL_02400"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18899.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="67" mass="7583" checksum="9E3F589C23EBDBC2" modified="2015-11-11" version="1" fragment="single">MGTPSSKTFASGKTATTRRLVSFLLQYECKAKEFQRCDCGATRFVALVRLRVHNVRGVKVPFRENAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWL9</accession>
    <name>A0A0M2UWL9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Lipopolysaccharide biosynthesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02383</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000228">
        <property type="protein sequence ID" value="KKO18904.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18904">
        <property type="protein sequence ID" value="KKO18904"/>
        <property type="gene ID" value="BROFUL_02383"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="257"/>
            <end position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18904.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="525" mass="58101" checksum="7CD4549536EA4FFB" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWN3</accession>
    <name>A0A0M2UWN3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00804</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000102">
        <property type="protein sequence ID" value="KKO20473.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20473">
        <property type="protein sequence ID" value="KKO20473"/>
        <property type="gene ID" value="BROFUL_00804"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20473.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="182" mass="21402" checksum="987003D0795E0AC4" modified="2015-11-11" version="1">MNLFGRTRRGFIAGAVVLMTCMGAVRILPVYGDHPEQTMQRKEREMSSVTLEDVTTFTNEYILRNSKDGLFTYYDKNAKKDLELILDNIHREKLSKTRKNEYFVCVNFTGRDGRTYDLDFFVQGKSKRYFTIDKKGISIHKVNGKECYVWVYHEKKDVWTKKIIETEEKQSAQPAYPKPDYP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWN7</accession>
    <name>A0A0M2UWN7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Peptidyl-prolyl cis-trans isomerase</fullName>
            <shortName evidence="1">PPIase</shortName>
            <ecNumber evidence="1">5.2.1.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01259</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[protein]-peptidylproline (omega=180) = [protein]-peptidylproline (omega=0)</text>
            <dbReference type="Rhea" id="RHEA:16237"/>
            <dbReference type="Rhea" id="RHEA-COMP:10747"/>
            <dbReference type="Rhea" id="RHEA-COMP:10748"/>
            <dbReference type="ChEBI" id="CHEBI:83833"/>
            <dbReference type="ChEBI" id="CHEBI:83834"/>
            <dbReference type="EC" id="5.2.1.8"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the cyclophilin-type PPIase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.2.1.8" evidence="1"/>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO19990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19990">
        <property type="protein sequence ID" value="KKO19990"/>
        <property type="gene ID" value="BROFUL_01259"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1556"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000413">
        <property type="term" value="P:protein peptidyl-prolyl isomerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.100.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029000">
        <property type="entry name" value="Cyclophilin-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020892">
        <property type="entry name" value="Cyclophilin-type_PPIase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002130">
        <property type="entry name" value="Cyclophilin-type_PPIase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044666">
        <property type="entry name" value="Cyclophilin_A-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45625">
        <property type="entry name" value="PTHR45625"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00160">
        <property type="entry name" value="Pro_isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00153">
        <property type="entry name" value="CSAPPISMRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50891">
        <property type="entry name" value="SSF50891"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00170">
        <property type="entry name" value="CSA_PPIASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50072">
        <property type="entry name" value="CSA_PPIASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0697">Rotamase</keyword>
    <feature type="domain" description="PPIase cyclophilin-type" evidence="2">
        <location>
            <begin position="25"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19990.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="136" mass="15090" checksum="031E7EDCA23CE4CC" modified="2015-11-11" version="1">MPTKQWNTPPALQIDANKTYHATIETNRGKISIELFPKNAPKTVNNFVFLAKEGFYDGVVFHRVINDFMIQGGDPTGTGRGGPGYKFEDETKGNPLTHDTGVISMRMPDQIPMVANFLSRTARSLTSTGNTRFLVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWT6</accession>
    <name>A0A0M2UWT6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Magnesium transporter MgtE</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_00750</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Acts as a magnesium transporter.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the SLC41A transporter family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000095">
        <property type="protein sequence ID" value="KKO20528.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20528">
        <property type="protein sequence ID" value="KKO20528"/>
        <property type="gene ID" value="BROFUL_00750"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.948"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015095">
        <property type="term" value="F:magnesium ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.357.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.60.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006668">
        <property type="entry name" value="Mg_transptr_MgtE_intracell_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038076">
        <property type="entry name" value="MgtE_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006669">
        <property type="entry name" value="MgtE_transporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006667">
        <property type="entry name" value="SLC41_membr_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036739">
        <property type="entry name" value="SLC41_membr_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43773">
        <property type="entry name" value="PTHR43773"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01769">
        <property type="entry name" value="MgtE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03448">
        <property type="entry name" value="MgtE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00924">
        <property type="entry name" value="MgtE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161093">
        <property type="entry name" value="SSF161093"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00400">
        <property type="entry name" value="mgtE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0129">CBS domain</keyword>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="283"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="310"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="363"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="389"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="421"/>
            <end position="442"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="8">
        <location>
            <begin position="139"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="8">
        <location>
            <begin position="203"/>
            <end position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU362011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="454" mass="51086" checksum="FFB8E96C3D9ED9B4" modified="2015-11-11" version="1">MELQWTKIFLPEIKELIETRDFKGLRDFLRERHPADIVDILRELDPTERVMGFRLLDKHKISAVFALVEPVEQEELLKQFTEQHAKEILIQMQPDDRTQLFDELPAHVVEKLLKLLPPAERKEANELLNYPHNSSGRIMTPEYVDLQIGMTVAEALEHIRKTGPNRETIYICYIVDETKKLRGVASLKNIILANPGQLIKDIMNENVFYVHTTDDQEKAVQVVQKYDILAVPVVDNEDRLVGIVTVDDVLDVVQEEVTEDFQRMAGIQTTEEEYFRVGFSKRIVNRVSWLVILVIAATISQTILKSYSGVLSSVIALAYFIPMLTGSGGNTGSQSSTLIIRALATGEIKTKEWWRILLREFKVGISLGLIMGFIAFVIAAISLKQMTVASTVGVSLCIVVSVGNIVGLAIPLFFRFIKLDPAFVSAPLIATLLDATGLVIYFEIASRMLTWSAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWU2</accession>
    <name>A0A0M2UWU2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Demethylmenaquinone methyltransferase</fullName>
            <ecNumber evidence="4">2.1.1.163</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">menG</name>
        <name evidence="5" type="ORF">BROFUL_00741</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>a 2-demethylmenaquinol + S-adenosyl-L-methionine = a menaquinol + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42640"/>
            <dbReference type="Rhea" id="RHEA-COMP:9539"/>
            <dbReference type="Rhea" id="RHEA-COMP:9563"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:18151"/>
            <dbReference type="ChEBI" id="CHEBI:55437"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="EC" id="2.1.1.163"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4">Quinol/quinone metabolism; menaquinone biosynthesis; menaquinol from 1,4-dihydroxy-2-naphthoate: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the class I-like SAM-binding methyltransferase superfamily. MenG/UbiE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.163" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000094">
        <property type="protein sequence ID" value="KKO20533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20533">
        <property type="protein sequence ID" value="KKO20533"/>
        <property type="gene ID" value="BROFUL_00741"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00079">
        <property type="reaction ID" value="UER00169"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043770">
        <property type="term" value="F:demethylmenaquinone methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102094">
        <property type="term" value="F:S-adenosylmethionine:2-demethylmenaquinol methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102955">
        <property type="term" value="F:S-adenosylmethionine:2-demethylmenaquinol-7 methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102027">
        <property type="term" value="F:S-adenosylmethionine:2-demethylquinol-8 methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009234">
        <property type="term" value="P:menaquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01813">
        <property type="entry name" value="MenG_UbiE_methyltr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004033">
        <property type="entry name" value="UbiE/COQ5_MeTrFase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023576">
        <property type="entry name" value="UbiE/COQ5_MeTrFase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01209">
        <property type="entry name" value="Ubie_methyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01934">
        <property type="entry name" value="MenG_MenH_UbiE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51608">
        <property type="entry name" value="SAM_MT_UBIE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01183">
        <property type="entry name" value="UBIE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0474">Menaquinone biosynthesis</keyword>
    <keyword evidence="1 4 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 4 5" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0830">Ubiquinone</keyword>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="4">
        <location>
            <begin position="113"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="64"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="85"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="244" mass="27350" checksum="05352A1010053093" modified="2015-11-11" version="1">MLTQTDLLTKKGVYIQQMFGSIARVYDLLNTILSFNFDKSWRKFAVKVSNVTPDAKVLDVCTGTGDLAIAYSRVLNGSGRVIGSDFCHEMVRLAELKLKRRNLSDKIKVIDADTLRLPFRDNSFQVSGVAFGIRNVADLRAGIAEMVRITAPGGRVVILEFSQPINPVFKGIYYFYFKKILPFIGRLISRSKYNAYSYLPSSVLNFPDRYGLRTQMESCGLEDVKIYPKTLGIVTVHVGTKPGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWY2</accession>
    <name>A0A0M2UWY2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 2">Peptidyl-tRNA hydrolase</fullName>
            <shortName evidence="1">PTH</shortName>
            <ecNumber evidence="1 2">3.1.1.29</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1 4" type="primary">pth</name>
        <name evidence="4" type="ORF">BROFUL_00691</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 2">
            <text>an N-acyl-L-alpha-aminoacyl-tRNA + H2O = a tRNA + an N-acyl-L-amino acid + H(+)</text>
            <dbReference type="Rhea" id="RHEA:54448"/>
            <dbReference type="Rhea" id="RHEA-COMP:10123"/>
            <dbReference type="Rhea" id="RHEA-COMP:13883"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:59874"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:138191"/>
            <dbReference type="EC" id="3.1.1.29"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the PTH family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.29" evidence="1 2"/>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20573.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20573">
        <property type="protein sequence ID" value="KKO20573"/>
        <property type="gene ID" value="BROFUL_00691"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.878"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004045">
        <property type="term" value="F:aminoacyl-tRNA hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00462">
        <property type="entry name" value="PTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1470">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00083">
        <property type="entry name" value="Pept_tRNA_hydro_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001328">
        <property type="entry name" value="Pept_tRNA_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018171">
        <property type="entry name" value="Pept_tRNA_hydro_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036416">
        <property type="entry name" value="Pept_tRNA_hydro_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR17224">
        <property type="entry name" value="PTHR17224"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01195">
        <property type="entry name" value="Pept_tRNA_hydro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53178">
        <property type="entry name" value="SSF53178"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00447">
        <property type="entry name" value="pth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01195">
        <property type="entry name" value="PEPT_TRNA_HYDROL_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 2 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00083"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000673"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU004320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20573.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="184" mass="20560" checksum="24163AF1772843CE" modified="2015-11-11" version="1">MKIIVGLGNPGERYLRTRHNFGFMVIDRFARYLEAECRQKNFQSFFCKKTMQGEEIILLKPQTFMNLSGGAVKEALAFYKGALRDLMVVCDDLDLPLGKIRVKRDGGSGGHRGLESIAQSLGNSGFPRLKIGIGRPPGGDTSNYVLSPFSKDEESTVHETIEKTCLALQTWIFEGVETCMNKFN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX17</accession>
    <name>A0A0M2UX17_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01753</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000182">
        <property type="protein sequence ID" value="KKO19526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19526">
        <property type="protein sequence ID" value="KKO19526"/>
        <property type="gene ID" value="BROFUL_01753"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="216"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="135"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="58"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="3">
        <location>
            <begin position="141"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="173"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="284" mass="32198" checksum="413994B41A2890B2" modified="2015-11-11" version="1">MITRKFQKFHCVVKALLFVIVMQPFTGKISSGEENAYKYSKQAERFKKSSFSRFQTDLHRALYKLEEKSDNLEAMNQNLEGRVNMLSSENDKLSKAHTQMRVKQATLEKEQARMKKQAASLEAAYKKLSNRAYAVKAPKKTKSVAQKKSGKKTTQKKTSVTKKGAAKTKMATKTGKKTPQSEKTETTSSPDSYSQRVADVTKPEEVKGAEDYGLDIKKTNEKGIEYGKKGMYDEAIREFQKVASAEPNLANVHYNLGLAYKKKGMRTEADREFAEYERLKGQNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX87</accession>
    <name>A0A0M2UX87_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00590</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000082">
        <property type="protein sequence ID" value="KKO20683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20683">
        <property type="protein sequence ID" value="KKO20683"/>
        <property type="gene ID" value="BROFUL_00590"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="4"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="289" mass="33185" checksum="E35DB77D91B039B6" modified="2015-11-11" version="1">MMDQRTPTNKYEIVVVDNCSTDSTKKVVDQFSAKGNVRYIFEPTLGLSYARNTGWRSARGKYVAYLDDDAIACPVWLDKILEAFETVTPRPGCVGGRVTPIWEASRPEWLSDWLLHGLTIIDWSDMPHILTNLSEEWLVGANIAFPVEILERVGGFTPNLDRAGNNLLSSGDVFLENQIKNMGYSCFYHPDITIGHHIFESRLSQSWFIRRYYWQGVSDAVIHLLQERPSMLKRLRFAYSQAKILLQSPGKLKTLILPTNNPERFTQKCFTLIILGHIYGVLRFVRPWQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXD5</accession>
    <name>A0A0M2UXD5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00739</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000093">
        <property type="protein sequence ID" value="KKO20537.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20537">
        <property type="protein sequence ID" value="KKO20537"/>
        <property type="gene ID" value="BROFUL_00739"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20537.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="103" mass="11923" checksum="5EDD92B7649984B7" modified="2015-11-11" version="1" fragment="single">MVGDRGMIKTMQIECLPEGFHYITAITKPQIESLIKQGILQLGLFEEKLCEIKSEGVRYILRRNPIRAEEMAKTRMSKLQHMGNYIEKKNSYLKEHPKASVSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXE7</accession>
    <name>A0A0M2UXE7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00723</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000090">
        <property type="protein sequence ID" value="KKO20547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20547">
        <property type="protein sequence ID" value="KKO20547"/>
        <property type="gene ID" value="BROFUL_00723"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="109"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20547.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="140" mass="15617" checksum="648A9016D3BDC0B5" modified="2015-11-11" version="1">MRQKLLLFGRTSLFMRRILIITSFILAGLTFGNIFLKTATIIDGQTAGQRNAGYIRVTDATQTASTMKVIGSAGFCDNKNIFLGINNQCQGGGLENKGSSPGYYVNYNHWDNNDDGHNDEEDVDVYDEEDKENDHDRENA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXJ1</accession>
    <name>A0A0M2UXJ1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00999</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000118">
        <property type="protein sequence ID" value="KKO20290.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20290">
        <property type="protein sequence ID" value="KKO20290"/>
        <property type="gene ID" value="BROFUL_00999"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1252"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016035">
        <property type="entry name" value="Acyl_Trfase/lysoPLipase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52151">
        <property type="entry name" value="SSF52151"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="SSF81665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="258"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="289"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="323"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="349"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="382"/>
            <end position="405"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="641"/>
            <end position="665"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="677"/>
            <end position="701"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="707"/>
            <end position="729"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="750"/>
            <end position="770"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="782"/>
            <end position="805"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20290.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1200" mass="138886" checksum="4B5EA014B3CFDA5F" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXR8</accession>
    <name>A0A0M2UXR8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01537</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000158">
        <property type="protein sequence ID" value="KKO19761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19761">
        <property type="protein sequence ID" value="KKO19761"/>
        <property type="gene ID" value="BROFUL_01537"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="80" mass="9229" checksum="AA1ED651DF956A6C" modified="2015-11-11" version="1">MSFSSSIECPLASGLMNRIFGLFIPESLHFRHILPFYPKKFNDFHEHFSPASPYFTGLWGVSVQTLRIDFAYHIYLNGGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXY0</accession>
    <name>A0A0M2UXY0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">OstA-like_N domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_00850</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000105">
        <property type="protein sequence ID" value="KKO20425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20425">
        <property type="protein sequence ID" value="KKO20425"/>
        <property type="gene ID" value="BROFUL_00850"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015221">
        <property type="term" value="F:lipopolysaccharide transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010664">
        <property type="entry name" value="LipoPS_assembly_LptC-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026265">
        <property type="entry name" value="LptC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005653">
        <property type="entry name" value="OstA-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06835">
        <property type="entry name" value="LptC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03968">
        <property type="entry name" value="LptD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04409">
        <property type="entry name" value="LptC_YrbK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="OstA-like_N" evidence="7">
        <location>
            <begin position="255"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="30"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="211"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF03968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="660" mass="73913" checksum="3A1B7B94FB70A383" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXY4</accession>
    <name>A0A0M2UXY4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Methyltransf_11 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00316</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000038">
        <property type="protein sequence ID" value="KKO20953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20953">
        <property type="protein sequence ID" value="KKO20953"/>
        <property type="gene ID" value="BROFUL_00316"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.389"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Methyltransf_11" evidence="1">
        <location>
            <begin position="71"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="211" mass="24636" checksum="07834CE19120942A" modified="2015-11-11" version="1">MSLAHRVSKYNRDRKWRAFLKEISPSPILRVLDIGFSENEYSGTDNYIEKHYPYPNMLTALGIDAPIKFKERYPSVNSVQYNGAKFPFEDKAFDVTWSNAVIEHVGSRDKQLLFLKEIKRVSRRAFFTTPNKYFPVEVHTRTMLLHYLPKIVFDKYLNLIGKTWASGDYMYLLSLNTLKSLLADAGINEYRIVKNRIAGFTMDFFVSCEFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXY8</accession>
    <name>A0A0M2UXY8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00311</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000036">
        <property type="protein sequence ID" value="KKO20958.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20958">
        <property type="protein sequence ID" value="KKO20958"/>
        <property type="gene ID" value="BROFUL_00311"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20958.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="50" mass="6056" checksum="A65D2280998E7F20" modified="2015-11-11" version="1">MRYRRRSILCTECAHEQVELLAVVVVVVVVMMMMMTLSRLVFIRRLRFLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY07</accession>
    <name>A0A0M2UY07_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00835</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000104">
        <property type="protein sequence ID" value="KKO20450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20450">
        <property type="protein sequence ID" value="KKO20450"/>
        <property type="gene ID" value="BROFUL_00835"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="199"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="270" mass="30465" checksum="59921E145CA78D3A" modified="2015-11-11" version="1">MGNRVKSSKLVYFLVFSVSSSSIVGCGYHPFRADKKYYKYQPTLLDRVWARSMVMTKDDNIEKSVEKIRDFIKPGKEGEVKKALRELVDSENKEKKKDELIKACTDKIKIHIQTVNLKPEDQIIEENIKPVLNDLIKYEEKEYAVNGMKFKVKDNSIEFTGLGVSVPLKDVKVTDADVIGFSSDIQKALRARMDFGRRVRLGSGTVQILAAAAGATLGLITKDVTTAAALAAVSAVIPELQNIFQARDRLEHTKMDLHYSRTLRRVITRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY24</accession>
    <name>A0A0M2UY24_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00505</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000070">
        <property type="protein sequence ID" value="KKO20762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20762">
        <property type="protein sequence ID" value="KKO20762"/>
        <property type="gene ID" value="BROFUL_00505"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="64" mass="7150" checksum="E508F793BDBF1588" modified="2015-11-11" version="1">MKHTTQKGTIAQLAIIMIVSLVSITQGIYAASSSNCHKVRKTQGKYRYRTARMLLQTVLLPEVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY36</accession>
    <name>A0A0M2UY36_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 13">Inosine-5'-monophosphate dehydrogenase</fullName>
            <shortName evidence="7">IMP dehydrogenase</shortName>
            <shortName evidence="7">IMPD</shortName>
            <shortName evidence="7">IMPDH</shortName>
            <ecNumber evidence="7 13">1.1.1.205</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">guaB</name>
        <name evidence="15" type="ORF">BROFUL_00276</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7 13">
            <text>H2O + IMP + NAD(+) = H(+) + NADH + XMP</text>
            <dbReference type="Rhea" id="RHEA:11708"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57464"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <dbReference type="EC" id="1.1.1.205"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </cofactor>
    </comment>
    <comment type="activity regulation">
        <text evidence="7">Mycophenolic acid (MPA) is a non-competitive inhibitor that prevents formation of the closed enzyme conformation by binding to the same site as the amobile flap. In contrast, mizoribine monophosphate (MZP) is a competitive inhibitor that induces the closed conformation. MPA is a potent inhibitor of mammalian IMPDHs but a poor inhibitor of the bacterial enzymes. MZP is a more potent inhibitor of bacterial IMPDH.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7 13">Purine metabolism; XMP biosynthesis via de novo pathway; XMP from IMP: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 12">Belongs to the IMPDH/GMPR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.205" evidence="7 13"/>
    <dbReference type="EMBL" id="LAQJ01000032">
        <property type="protein sequence ID" value="KKO20993.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20993">
        <property type="protein sequence ID" value="KKO20993"/>
        <property type="gene ID" value="BROFUL_00276"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.337"/>
    <dbReference type="UniPathway" id="UPA00601">
        <property type="reaction ID" value="UER00295"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003938">
        <property type="term" value="F:IMP dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006177">
        <property type="term" value="P:GMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00381">
        <property type="entry name" value="IMPDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01964">
        <property type="entry name" value="IMPDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005990">
        <property type="entry name" value="IMP_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015875">
        <property type="entry name" value="IMP_DH/GMP_Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001093">
        <property type="entry name" value="IMP_DH_GMPRt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11911">
        <property type="entry name" value="PTHR11911"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00478">
        <property type="entry name" value="IMPDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000130">
        <property type="entry name" value="IMPDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01302">
        <property type="entry name" value="IMP_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00487">
        <property type="entry name" value="IMP_DH_GMP_RED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 11" id="KW-0129">CBS domain</keyword>
    <keyword evidence="3 7 13" id="KW-0332">GMP biosynthesis</keyword>
    <keyword evidence="2 7 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7 9 13" id="KW-0520">NAD</keyword>
    <keyword evidence="5 7 12" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4 7 10" id="KW-0630">Potassium</keyword>
    <keyword evidence="7 13" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CBS" evidence="14">
        <location>
            <begin position="102"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="14">
        <location>
            <begin position="165"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="region of interest" description="IMP binding" evidence="7">
        <location>
            <begin position="349"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="region of interest" description="IMP binding" evidence="7">
        <location>
            <begin position="372"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="region of interest" description="IMP binding" evidence="7">
        <location>
            <begin position="396"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="active site" description="Thioimidate intermediate" evidence="7 8">
        <location>
            <position position="315"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="7 8">
        <location>
            <position position="412"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7 9">
        <location>
            <begin position="258"/>
            <end position="260"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 9">
        <location>
            <begin position="308"/>
            <end position="310"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 10">
        <location>
            <position position="310"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 10">
        <location>
            <position position="312"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="313"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 10">
        <location>
            <position position="315"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="424"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="479"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
            <note>ligand shared between two tetrameric partners</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000130-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000130-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR000130-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU003927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU003928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KKO20993.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="504" mass="54998" checksum="F4389252D81A362E" modified="2015-11-11" version="1">MSSNGLDAKTFFEHEGGITYNDFILLPGYIDFSLDEISLETYLTRNIKIKRPVISSPMDTVTESRMAISMAMLGGMGVIHYNNSIESQAKEVRRVKRYENGFITEPVVLSPNNTIRDVDALKEAYGFSGIPITEDGTLNARLVGIVTKRDIDFEADRTKKVRDVMTTQLVTAPAGISLAEGNRILRESKKGKLPLVDKQGRLVSLMSRTDLLKNADFPCASKSKDKQLIVGAALSTREDDKERLDELVKAGVDVIVIDSSQGNSVFQINMIRYSKKKYPHIDIVGGNVVTVSQCKSLIDAGADALRIGMGSGSICITQDTLAVGRAQGSAVYHTAKFAREYANIPVIADGGIAHIGHIVKALALGASTVMMGGLLAGTSESPGEYFYEGGVRVKKYRGMASHEAMEKGGGKRYLSSEDRIKVAQGVTGTVVDKGSVINLVSYLMQSLLHSLQELGYRSIQELRNGIYDGTLRFEKRSQSAQVEGSVHNLYSFKEPHLGLLRMGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY52</accession>
    <name>A0A0M2UY52_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 9">Quinolinate synthase</fullName>
            <ecNumber evidence="2 9">2.5.1.72</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">nadA</name>
        <name evidence="10" type="ORF">BROFUL_01405</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>dihydroxyacetone phosphate + iminosuccinate = H(+) + 2 H2O + phosphate + quinolinate</text>
            <dbReference type="Rhea" id="RHEA:25888"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29959"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
            <dbReference type="ChEBI" id="CHEBI:77875"/>
            <dbReference type="EC" id="2.5.1.72"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="9">Binds 1 [4Fe-4S] cluster per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 9">Cofactor biosynthesis; NAD(+) biosynthesis; quinolinate from iminoaspartate: step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the quinolinate synthase family. Type 2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.72" evidence="2 9"/>
    <dbReference type="EMBL" id="LAQJ01000145">
        <property type="protein sequence ID" value="KKO19891.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19891">
        <property type="protein sequence ID" value="KKO19891"/>
        <property type="gene ID" value="BROFUL_01405"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1730"/>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00327"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008987">
        <property type="term" value="F:quinolinate synthetase A activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10800">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00568">
        <property type="entry name" value="NadA_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003473">
        <property type="entry name" value="NadA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036094">
        <property type="entry name" value="NadA_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023066">
        <property type="entry name" value="Quinolinate_synth_type2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30573">
        <property type="entry name" value="PTHR30573"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02445">
        <property type="entry name" value="NadA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142754">
        <property type="entry name" value="SSF142754"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00550">
        <property type="entry name" value="nadA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 9" id="KW-0408">Iron</keyword>
    <keyword evidence="8 9" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="6 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 9" id="KW-0662">Pyridine nucleotide biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 9" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Iminoaspartate binding" evidence="9">
        <location>
            <begin position="110"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="region of interest" description="Iminoaspartate binding" evidence="9">
        <location>
            <begin position="196"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="22"/>
        </location>
        <ligand>
            <name>iminosuccinate</name>
            <dbReference type="ChEBI" id="CHEBI:77875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="39"/>
        </location>
        <ligand>
            <name>iminosuccinate</name>
            <dbReference type="ChEBI" id="CHEBI:77875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="84"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="127"/>
        </location>
        <ligand>
            <name>iminosuccinate</name>
            <dbReference type="ChEBI" id="CHEBI:77875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="170"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="213"/>
        </location>
        <ligand>
            <name>iminosuccinate</name>
            <dbReference type="ChEBI" id="CHEBI:77875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="258"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00568"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19891.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="301" mass="33279" checksum="92BAA5DEC20D765F" modified="2015-11-11" version="1">MSTIIEKIKDLKAKRNAVILAHNYQRGDVQDIADFTGDSLGLSQQAANTKADIIVFCGVHFMAETASILCPDKMVLLPDEHAGCPMANMITLKQLKIKKSEHPQAKVVCYVNSTAAIKAESDICCTSSNAMKIVSSLPKDQEIIFIPDKSLGGYVASKLNRPMILWEGYCPTHHRILSEHIIILKSKHPNAKIVVHPECTPDVIALADHVASTTGIAKYCKETDAKEFIIGTETGILHRLKKENPQKTFYAISLLADCSNMKLISLEKVLWSLEDLVYQIQVPDNIAVKARTAIQRMLDLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY90</accession>
    <name>A0A0M2UY90_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00451</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000059">
        <property type="protein sequence ID" value="KKO20822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20822">
        <property type="protein sequence ID" value="KKO20822"/>
        <property type="gene ID" value="BROFUL_00451"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644161" evidence="1">
        <location>
            <begin position="22"/>
            <end position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="121" mass="13574" checksum="7E97D4FA30898471" modified="2015-11-11" version="1">MKNKIFVWVVVLCSLSLPAFGQFYEYDEPGIRLRTGLPTVFTVESVRQITGNDEESVLNIGISVKKGKVESVSRDGGTWIVTIRTSSKEASTYLIKDSQFKIMGEESKKVMINAIHWKDGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY91</accession>
    <name>A0A0M2UY91_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Precorrin-8X methylmutase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_00743</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the CobH/CbiC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000094">
        <property type="protein sequence ID" value="KKO20535.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20535">
        <property type="protein sequence ID" value="KKO20535"/>
        <property type="gene ID" value="BROFUL_00743"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.936"/>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016993">
        <property type="term" value="F:precorrin-8X methylmutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10230">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002762">
        <property type="entry name" value="CbiX-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003722">
        <property type="entry name" value="Cbl_synth_CobH/CbiC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036588">
        <property type="entry name" value="CobH/CbiC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02570">
        <property type="entry name" value="CbiC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01903">
        <property type="entry name" value="CbiX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63965">
        <property type="entry name" value="SSF63965"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="5" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CbiC" evidence="7">
        <location>
            <begin position="138"/>
            <end position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009774"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02570"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20535.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="337" mass="36728" checksum="FCC629D44DEB6FF5" modified="2015-11-11" version="1">MKTGVILISHGSKISSGNDGLFQVADMLRAMRRWDTVEAAFLQLAKPDFPEVVAKTVQCGVGRIVVVPLLLFKGNHVYKDIPEMLEAEKKKYPHVEFIYSNNIGADERIALIAADRIHEVLVEREYGVGQRVEQPQAIVDESFDIIENLVDLKSVPELHRPIIRRAIHATGDTEYAYNLIFHPSAVETGIRLIRGGKNIVTDVNMVKAGISKDPIEKFGGKIICKISDPSVVDEAKRLGKTRAIVSIQQSLPEMKDGIMVIGNAPTALFELIDLIKKGLAHPALVIGIPVGFVGAVEAKSALKDTAVPYITNTNRKGGSAVAVSIINAMINLAKEAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYN5</accession>
    <name>A0A0M2UYN5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">SWIM-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00080</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000008">
        <property type="protein sequence ID" value="KKO21198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21198">
        <property type="protein sequence ID" value="KKO21198"/>
        <property type="gene ID" value="BROFUL_00080"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.99"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007527">
        <property type="entry name" value="Znf_SWIM"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50966">
        <property type="entry name" value="ZF_SWIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="SWIM-type" evidence="3">
        <location>
            <begin position="152"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="249"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="249"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="290"/>
            <end position="329"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO21198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="329" mass="36901" checksum="95DE1FB900A2C7A8" modified="2015-11-11" version="1">MSFWGFPRYISVGEKQQRAKKKLEQLMKKNKDIQPVRIEGTAIAKTWWGKAWNKNLESYADYSNRIGRGRSYVRCGSVLDLQIQEGHVKSLVQGSDSEPYSIVIKIKALEEDIWKEIKDFCAGKLDSLQELLMGKFPKDLGEMFTTCGKGLFPSPKEIDFDCSCPDFASMCKHVAATLYGVGARLDHAPNLFFLLRKIEIGDLISETMRDKTEELLTLAEKKSQRILEGQDLSSVFGIEMDTVPDFERKNEGDAASKTASLEKIKATAKTRKTPPKKPLHGPKSQVIQKSGRKTTKKTKKVATSKAVKGKAAKKPAKKLPKKAARKFRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYW3</accession>
    <name>A0A0M2UYW3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">FG-GAP repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00456</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000060">
        <property type="protein sequence ID" value="KKO20815.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20815">
        <property type="protein sequence ID" value="KKO20815"/>
        <property type="gene ID" value="BROFUL_00456"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.571"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008305">
        <property type="term" value="C:integrin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007155">
        <property type="term" value="P:cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.130">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013517">
        <property type="entry name" value="FG-GAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013519">
        <property type="entry name" value="Int_alpha_beta-p"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000413">
        <property type="entry name" value="Integrin_alpha"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028994">
        <property type="entry name" value="Integrin_alpha_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01839">
        <property type="entry name" value="FG-GAP"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01185">
        <property type="entry name" value="INTEGRINA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00191">
        <property type="entry name" value="Int_alpha"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69318">
        <property type="entry name" value="SSF69318"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51470">
        <property type="entry name" value="FG_GAP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20815.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="332" mass="35615" checksum="8816564E4200BAA4" modified="2015-11-11" version="1">MCLKRRWKLFPVIGCKITLLTVLVFTRAFPAYGEIRGDFNGDGFSDLAIGVPFEDITAGTATVTDAGAVNVLYGSLAGLQASSPDDQFWYQGDSGVQDSAERIDRFGYSLGTGDFNGDGCDDLAIGVPFENITVGTTTVNNAGAVQVLYGSSVTGLQTTSPDDQFWCQNCPGVRDIPETEDYFGWALSVGDFNGDGYDDLAIGVPAEDRAGAVQVLYGSSAGLQTTLTDDQFWHQDSGGIKEARETQDNFGRYLSVGDFNNDGYDDLAIGVPDEDIVAGTRNVHNAGAVQILYGSTHGLQANGVDVPDDQLWYQAIRVSRIRQKPGIISVRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYZ9</accession>
    <name>A0A0M2UYZ9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01039</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20191">
        <property type="protein sequence ID" value="KKO20191"/>
        <property type="gene ID" value="BROFUL_01039"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.940.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035926">
        <property type="entry name" value="NusB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008769">
        <property type="entry name" value="PhaF_PhaI"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05597">
        <property type="entry name" value="Phasin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="103" mass="11915" checksum="8EC5EFBB23506948" modified="2015-11-11" version="1">MTDFINKMINLGFGAALLTKENVEEVIDEMVKKGEIKKDEAKARASDLFKKVLSSKQEIESKIEKIVENALHKLDIPTRKELQEMQKKLEEVIKRLESREDLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ79</accession>
    <name>A0A0M2UZ79_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00325</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000040">
        <property type="protein sequence ID" value="KKO20945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20945">
        <property type="protein sequence ID" value="KKO20945"/>
        <property type="gene ID" value="BROFUL_00325"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="SSF51126"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644111" evidence="2">
        <location>
            <begin position="21"/>
            <end position="636"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="604"/>
            <end position="636"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="636" mass="71893" checksum="EAAF1A0E0005EEAA" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ91</accession>
    <name>A0A0M2UZ91_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00318</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000038">
        <property type="protein sequence ID" value="KKO20955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20955">
        <property type="protein sequence ID" value="KKO20955"/>
        <property type="gene ID" value="BROFUL_00318"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="141" mass="16618" checksum="128F839D1D45BE29" modified="2015-11-11" version="1">MHIGALKKEAGRDYRLVTISIPKPQEPVNENTFRFSLDRERLRQAYRREGRYLLRSNMQATAPETVWENYLLLTRIEQAFKDLKGSLSVRPLWHQLERRELKAICFVAFYQRWPNAYFANLGLFTLTAAHALACQPRRGNH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ94</accession>
    <name>A0A0M2UZ94_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00128</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000016">
        <property type="protein sequence ID" value="KKO21127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21127">
        <property type="protein sequence ID" value="KKO21127"/>
        <property type="gene ID" value="BROFUL_00128"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="33" mass="3906" checksum="573F3FE6670D664F" modified="2015-11-11" version="1">MPDKAGDSSCLVRKREKKKLDIILERGFFVRRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZA1</accession>
    <name>A0A0M2UZA1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Ysc84 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00300</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000035">
        <property type="protein sequence ID" value="KKO20965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20965">
        <property type="protein sequence ID" value="KKO20965"/>
        <property type="gene ID" value="BROFUL_00300"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.363"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007461">
        <property type="entry name" value="Ysc84_actin-binding"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04366">
        <property type="entry name" value="Ysc84"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ysc84" evidence="1">
        <location>
            <begin position="37"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04366"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="120" mass="12567" checksum="62CDCE5D4B8391CF" modified="2015-11-11" version="1">MQSSQRVTKGGLGIGAAHGKGEVYEQGKFIGTADVKQITFGAQFGGQQYSEIIFFKDKATLEDFKASKMKLGAQASAIAATSGVSADAAYSEGVAVTTLAKTGLMYEATIAGQKFTFKPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZJ7</accession>
    <name>A0A0M2UZJ7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Phosphoesterase domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00010</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000003">
        <property type="protein sequence ID" value="KKO21257.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21257">
        <property type="protein sequence ID" value="KKO21257"/>
        <property type="gene ID" value="BROFUL_00010"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001667">
        <property type="entry name" value="DDH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038763">
        <property type="entry name" value="DHH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01368">
        <property type="entry name" value="DHH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64182">
        <property type="entry name" value="SSF64182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DHH" evidence="2">
        <location>
            <begin position="23"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="215"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="218"/>
            <end position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO21257.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="267" mass="29885" checksum="764BA0BB8EA34BF0" modified="2015-11-11" version="1">MEDTIVKMHGEEICSMVKRYQRFLITTHVRADGDGIGSEVALYHALRSMGKTVCIANDSPTPQMYQFIIPPEGVYIYPDSPKDRAEVVFALDSPTLERLGMIQEIIPEDAKIINVDHHISNEYFGAVNWVAEDMCATGEIVLTLLREMDIDITPDMATALYVAIVTDTGRFTHSNTTPAALRAAAFLIERGARHEEISKNVYNTNSFPLIQLRAGAQHGRPPRREPDCRHLADKRDAGEGEDQRYRHAGICRHSRVNRGGDRWGAAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZL0</accession>
    <name>A0A0M2UZL0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF4405 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00872</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000106">
        <property type="protein sequence ID" value="KKO20401.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20401">
        <property type="protein sequence ID" value="KKO20401"/>
        <property type="gene ID" value="BROFUL_00872"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025517">
        <property type="entry name" value="DUF4405"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14358">
        <property type="entry name" value="DUF4405"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="58"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="100"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4405" evidence="2">
        <location>
            <begin position="9"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20401.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="134" mass="15371" checksum="BFD2BA715B9FFC95" modified="2015-11-11" version="1">MDKSKVNLVIDALLFLCVMAMTGIGILMKFVLLPGKDTWAVYGRKVELFLFGMDRHQWGTIHMIIAFVFLGLAALHVVLHWKMIVSFYPRLIGNKTARRIIAVMLVIVALFFVTFPLVVKPEVQEPEHKGRNYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZL5</accession>
    <name>A0A0M2UZL5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative iron dependent repressor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00877</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000106">
        <property type="protein sequence ID" value="KKO20406.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20406">
        <property type="protein sequence ID" value="KKO20406"/>
        <property type="gene ID" value="BROFUL_00877"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046914">
        <property type="term" value="F:transition metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007167">
        <property type="entry name" value="Fe-transptr_FeoA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001367">
        <property type="entry name" value="Fe_dep_repressor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036421">
        <property type="entry name" value="Fe_dep_repressor_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038157">
        <property type="entry name" value="FeoA_core_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022689">
        <property type="entry name" value="Iron_dep_repressor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008988">
        <property type="entry name" value="Transcriptional_repressor_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02742">
        <property type="entry name" value="Fe_dep_repr_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04023">
        <property type="entry name" value="FeoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00899">
        <property type="entry name" value="FeoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00529">
        <property type="entry name" value="HTH_DTXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47979">
        <property type="entry name" value="SSF47979"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50037">
        <property type="entry name" value="SSF50037"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FeoA" evidence="2">
        <location>
            <begin position="145"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20406.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="216" mass="24167" checksum="1C0CD3A0C872E326" modified="2015-11-11" version="1">MTEPCQEEILELIWTIDEEIGKVERDSLIKKINLPSAEQLLNTLIHENYVTISDSKVALTKKGLADARLVIRRHRLAERLLNDVLDVKEDAMDSSACKFEHILDEEVTTSICTLLGHPVSCPHGKAIPPGECCAKANKEIRPIVMPLSDLKSGDEAKIAYIVTKFHGRLDRLSSMGLLPGVQIHLHQRQPTYVIQMGETQIALDTAIARDIYVRLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZS7</accession>
    <name>A0A0M2UZS7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00177</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000018">
        <property type="protein sequence ID" value="KKO21095.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21095">
        <property type="protein sequence ID" value="KKO21095"/>
        <property type="gene ID" value="BROFUL_00177"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21095.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="149" mass="17458" checksum="F17E3A6A68E008E9" modified="2015-11-11" version="1">MGRINFGVEENIIEESAFNFLLNLFLINTLKVKQFCSAYSTFSRTKVFRFELKVWPNITFTKSRRPRNQACLKNYKLSASLLLLRKVLAVLAFRFIFQKNRRTLIFGGPICTKISEIKSLIFLMKLAEWQRQCSNAGYEAIVRVGYRQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZU2</accession>
    <name>A0A0M2UZU2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Site-specific DNA-methyltransferase (adenine-specific)</fullName>
            <ecNumber evidence="2">2.1.1.72</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00182</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 2'-deoxyadenosine in DNA + S-adenosyl-L-methionine = an N(6)-methyl-2'-deoxyadenosine in DNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:15197"/>
            <dbReference type="Rhea" id="RHEA-COMP:12418"/>
            <dbReference type="Rhea" id="RHEA-COMP:12419"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:90615"/>
            <dbReference type="ChEBI" id="CHEBI:90616"/>
            <dbReference type="EC" id="2.1.1.72"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.72" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000018">
        <property type="protein sequence ID" value="KKO21100.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21100">
        <property type="protein sequence ID" value="KKO21100"/>
        <property type="gene ID" value="BROFUL_00182"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.222"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008170">
        <property type="term" value="F:N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009007">
        <property type="term" value="F:site-specific DNA-methyltransferase (adenine-specific) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003356">
        <property type="entry name" value="DNA_methylase_A-5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038333">
        <property type="entry name" value="T1MK-like_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02384">
        <property type="entry name" value="N6_Mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N6_Mtase" evidence="3">
        <location>
            <begin position="126"/>
            <end position="428"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO21100.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="463" mass="52883" checksum="2F71D76E493C753F" modified="2015-11-11" version="1">MRKDPGVSGDAQRIEQLGWMISLKILDDKDKEIEILNDKYVSPMPKKLQWRAWAADDEGITGDELKNFIDSDLIPRLKNLDVSSGNKRALIIREIFDGTNNYMKNGTIIRQVLNELNQIDFNNLEDRHVFGDIYETILRDLQSAGNYGEFYTPRALTEFITEMINPRLGEKVLDPACGTGGFLTSAIENIRKQDVKGVEDLKTLEKTIHGMEFKPLPFMLCVTNLILHDIEVPNVDYTDSLNREYTSIGQKDRVDVILANPPFGASVTDGAETNFPQNFRTTESADLFLMLMVRYLKDGGRAGIVLPDGSLTGEGVKQRIRQHFLENCNLHTIVRLPNSVFQPYASVATNLLFFEKGKPTKEIWYWEHKLPEGVKAYSKTKPIQKSEFDGLKKWWKKRKENEQAWKVSIDAIAANSYNLDIKNPHTPDEKHVYTSAELVTMLHESFRKSDGLLQQLRKELENG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZV2</accession>
    <name>A0A0M2UZV2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 7">Pyruvate, phosphate dikinase</fullName>
            <ecNumber evidence="4 7">2.7.9.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">BROFUL_00778</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>ATP + phosphate + pyruvate = AMP + diphosphate + H(+) + phosphoenolpyruvate</text>
            <dbReference type="Rhea" id="RHEA:10756"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.7.9.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 7 10">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the PEP-utilizing enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.9.1" evidence="4 7"/>
    <dbReference type="EMBL" id="LAQJ01000099">
        <property type="protein sequence ID" value="KKO20491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20491">
        <property type="protein sequence ID" value="KKO20491"/>
        <property type="gene ID" value="BROFUL_00778"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.986"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050242">
        <property type="term" value="F:pyruvate, phosphate dikinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="term" value="P:pyruvate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008279">
        <property type="entry name" value="PEP-util_enz_mobile_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018274">
        <property type="entry name" value="PEP_util_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000121">
        <property type="entry name" value="PEP_util_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023151">
        <property type="entry name" value="PEP_util_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036637">
        <property type="entry name" value="Phosphohistidine_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002192">
        <property type="entry name" value="PPDK_AMP/ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010121">
        <property type="entry name" value="Pyruvate_phosphate_dikinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22931">
        <property type="entry name" value="PTHR22931"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00391">
        <property type="entry name" value="PEP-utilizers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02896">
        <property type="entry name" value="PEP-utilizers_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01326">
        <property type="entry name" value="PPDK_N"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000853">
        <property type="entry name" value="PPDK"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52009">
        <property type="entry name" value="SSF52009"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01828">
        <property type="entry name" value="pyru_phos_dikin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00742">
        <property type="entry name" value="PEP_ENZYMES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00370">
        <property type="entry name" value="PEP_ENZYMES_PHOS_SITE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="15" id="KW-0418">Kinase</keyword>
    <keyword evidence="10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="15" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="15" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PPDK_N" evidence="13">
        <location>
            <begin position="22"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="domain" description="PPDK_N" evidence="13">
        <location>
            <begin position="307"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="domain" description="PEP-utilizers" evidence="12">
        <location>
            <begin position="424"/>
            <end position="506"/>
        </location>
    </feature>
    <feature type="domain" description="PEP-utilizers_C" evidence="14">
        <location>
            <begin position="521"/>
            <end position="912"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="11">
        <location>
            <begin position="588"/>
            <end position="615"/>
        </location>
    </feature>
    <feature type="active site" description="Tele-phosphohistidine intermediate" evidence="8">
        <location>
            <position position="458"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="8">
        <location>
            <position position="874"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="564"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="661"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9 10">
        <location>
            <position position="788"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="809"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="810"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="811"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9 10">
        <location>
            <position position="812"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00020138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRNR" id="PIRNR000853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000853-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000853-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR000853-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF01326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF02896"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="KKO20491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="923" mass="102288" checksum="B57C3FDF1C6C3298" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0Y7</accession>
    <name>A0A0M2V0Y7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PINc domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00900</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000109">
        <property type="protein sequence ID" value="KKO20379.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20379">
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        <property type="gene ID" value="BROFUL_00900"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
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    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002716">
        <property type="entry name" value="PIN_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01850">
        <property type="entry name" value="PIN"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PINc" evidence="1">
        <location>
            <begin position="8"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20379.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="129" mass="14934" checksum="020145AC4866E8CA" modified="2015-11-11" version="1">MKENREIYILDTSALLTYIEDENGSDYVENLLIKAEKEEVLIYIAFISLTEVFYITAKEKDESEALRRIMLIQSLSVRIVESDENLNIAAGKLKAKNIMSLADAYKRRYVKNIPEYLSIKTPNLKKCHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V122</accession>
    <name>A0A0M2V122_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcription elongation factor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00436</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000057">
        <property type="protein sequence ID" value="KKO20851.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20851">
        <property type="protein sequence ID" value="KKO20851"/>
        <property type="gene ID" value="BROFUL_00436"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.544"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070063">
        <property type="term" value="F:RNA polymerase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032784">
        <property type="term" value="P:regulation of DNA-templated transcription, elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036953">
        <property type="entry name" value="GreA/GreB_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029462">
        <property type="entry name" value="Rnk_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001437">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023459">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30437">
        <property type="entry name" value="PTHR30437"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01272">
        <property type="entry name" value="GreA_GreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14760">
        <property type="entry name" value="Rnk_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006092">
        <property type="entry name" value="GreA_GreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="3" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rnk_N" evidence="2">
        <location>
            <begin position="4"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="domain" description="GreA_GreB" evidence="1">
        <location>
            <begin position="53"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14760"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20851.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="114" mass="12596" checksum="57CF06E056F86084" modified="2015-11-11" version="1" fragment="single">MKNRRIFITAFDKKRLDELIAVAREFGEHAREDLDDLAAELDRASIVEPKKIPANVVTMNSKVLLHDLDTSDEETYALVFPNEADASSGAISVLAPIGTAILGYREGDVVEWPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V137</accession>
    <name>A0A0M2V137_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">GP-PDE domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00849</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000105">
        <property type="protein sequence ID" value="KKO20424.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20424">
        <property type="protein sequence ID" value="KKO20424"/>
        <property type="gene ID" value="BROFUL_00849"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030395">
        <property type="entry name" value="GP_PDE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017946">
        <property type="entry name" value="PLC-like_Pdiesterase_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03009">
        <property type="entry name" value="GDPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51695">
        <property type="entry name" value="SSF51695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51704">
        <property type="entry name" value="GP_PDE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GP-PDE" evidence="1">
        <location>
            <begin position="20"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20424.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="113" mass="12508" checksum="D0C602B746E7D3D5" modified="2015-11-11" version="1">MVFLLLPPYYSALAADTKQVEVFAHHGVLEDVPENTFAALRRVAELGIDGIAVDIRQTKDNQLVLMCDETIDRTTDGKGRVDQLVYAEIQQYDAGSCVAVSFRKNGYLSSLMP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V198</accession>
    <name>A0A0M2V198_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">2-acylglycerophosphoethanolamine acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00781</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000099">
        <property type="protein sequence ID" value="KKO20494.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20494">
        <property type="protein sequence ID" value="KKO20494"/>
        <property type="gene ID" value="BROFUL_00781"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002123">
        <property type="entry name" value="Plipid/glycerol_acylTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01553">
        <property type="entry name" value="Acyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00563">
        <property type="entry name" value="PlsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="26"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="domain" description="PlsC" evidence="2">
        <location>
            <begin position="63"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20494.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="234" mass="26212" checksum="EE66C5976F15FA6F" modified="2015-11-11" version="1">MKKKRENTDHEKAAFFPGMLSRLREFLNNCFFFVLKTTGVVLLKVFFHIQVQNAGYIPREGPLIVAANHFSYMDPVVLQAMFPRRIAFMMTEIYYEGRGKWLFQLLHCICVTEKGSNRAALKQGMTVLKKNDVLGIFPEGGVSREGLLQEGNPGIGFLVAKSGAPVIPAFISGTYQALPKGAKIPRSTRITIIFGKPMAFEDMSEWGTKKGFEEIAKVVMERIAALALSDKRTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1E7</accession>
    <name>A0A0M2V1E7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00725</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000090">
        <property type="protein sequence ID" value="KKO20549.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20549">
        <property type="protein sequence ID" value="KKO20549"/>
        <property type="gene ID" value="BROFUL_00725"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20549.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="182" mass="20757" checksum="FBC4041CBDBDFF48" modified="2015-11-11" version="1">MKNYLAKYLIFGSIVTLFSLSLFMGKLAQGQHAGGGIIDTTKQPGTSTPSFHQSFAPYGGTIPIPWIDEKPTPLSIKVTETITYEVPVDEKRFNEKKLTIEDLELKEVKDNTEINFHQVDCLFFKTIKQTQTRTVENLTCARERDGTQYWLSDGKKYVEWGAWSNWKVEKEAKGIEMAEKNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1P0</accession>
    <name>A0A0M2V1P0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">GDP-L-fucose synthase</fullName>
            <ecNumber evidence="2">1.1.1.271</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">wcaG</name>
        <name evidence="2" type="synonym">fcl</name>
        <name evidence="4" type="ORF">BROFUL_00203</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the two-step NADP-dependent conversion of GDP-4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>GDP-beta-L-fucose + NADP(+) = GDP-4-dehydro-alpha-D-rhamnose + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:18885"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57273"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:57964"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.271"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Nucleotide-sugar biosynthesis; GDP-L-fucose biosynthesis via de novo pathway; GDP-L-fucose from GDP-alpha-D-mannose: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the NAD(P)-dependent epimerase/dehydratase family. Fucose synthase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.271" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000025">
        <property type="protein sequence ID" value="KKO21066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21066">
        <property type="protein sequence ID" value="KKO21066"/>
        <property type="gene ID" value="BROFUL_00203"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.247"/>
    <dbReference type="UniPathway" id="UPA00128">
        <property type="reaction ID" value="UER00191"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050577">
        <property type="term" value="F:GDP-L-fucose synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070401">
        <property type="term" value="F:NADP+ binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042351">
        <property type="term" value="P:'de novo' GDP-L-fucose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd05239">
        <property type="entry name" value="GDP_FS_SDR_e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00956">
        <property type="entry name" value="GDP_fucose_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028614">
        <property type="entry name" value="GDP_fucose/colitose_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="2" id="KW-0521">NADP</keyword>
    <keyword evidence="2 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Epimerase" evidence="3">
        <location>
            <begin position="13"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="2">
        <location>
            <position position="143"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="17"/>
            <end position="23"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="112"/>
            <end position="115"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="147"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="170"/>
            <end position="173"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="186"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="194"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="264"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="271"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="334"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Important for catalytic activity" evidence="2">
        <location>
            <position position="114"/>
        </location>
    </feature>
    <feature type="site" description="Important for catalytic activity" evidence="2">
        <location>
            <position position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005959"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO21066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="376" mass="42726" checksum="6C027DE512B66A3E" modified="2015-11-11" version="1">MNNLITMHHNSKIYVAGHRGLVGSAILRKLQGSGYKNIITKTHEDLDLTRQSEVEMLFKEEKPEFVFLSAAKVGGIFANCTYKAEFIYQNIMIAANVIHASYKYGVTKLLNLGSSCIYPKYAPQPMVEEYLLTGSLESTNEPYAIAKISAIKLCRYFNEQYGTNFISAMPTNLYGLNDNFDLKTSHVLPALIRKMHLGKCLQHGDFDSIRKDLKKYPIDSQNIRHLNEEEIVGLLSEVGIKSNFPTKLKPETKNLQRTTTVDVWGTGSPYREFLHANDLADACIFLMQNYNARDMQEFINVGTGKELRIVELAEMIKEIVGFRGEIRWDASKSDGTPRKLLSIEKINKLGWKAKINLHEGIKGVYEKYLESQLQLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1P5</accession>
    <name>A0A0M2V1P5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Large-conductance mechanosensitive channel</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10 11" type="primary">mscL</name>
        <name evidence="11" type="ORF">BROFUL_00208</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Homopentamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell membrane</location>
            <topology evidence="10">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the MscL family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000025">
        <property type="protein sequence ID" value="KKO21071.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21071">
        <property type="protein sequence ID" value="KKO21071"/>
        <property type="gene ID" value="BROFUL_00208"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.253"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008381">
        <property type="term" value="F:mechanosensitive ion channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1200.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00115">
        <property type="entry name" value="MscL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019823">
        <property type="entry name" value="Mechanosensitive_channel_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001185">
        <property type="entry name" value="MS_channel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037673">
        <property type="entry name" value="MSC/AndL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036019">
        <property type="entry name" value="MscL_channel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30266">
        <property type="entry name" value="PTHR30266"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01741">
        <property type="entry name" value="MscL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01264">
        <property type="entry name" value="MECHCHANNEL"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81330">
        <property type="entry name" value="SSF81330"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00220">
        <property type="entry name" value="mscL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01327">
        <property type="entry name" value="MSCL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9 10" id="KW-0407">Ion channel</keyword>
    <keyword evidence="7 10" id="KW-0406">Ion transport</keyword>
    <keyword evidence="8 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 10" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="16"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="80"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO21071.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="140" mass="15013" checksum="773FB50FB0D86CC1" modified="2015-11-11" version="1">MSILKEFKTFAMRGNVLDLAVGIIIGAAFGKIITSLVNDIIMPPIGLLLGKMDFSNLFVNLSGTPYNSRTEAQAAGAPTIGYGAFVNTVIDFIIVAFAIFMLVRVINKVVQPATKVCSFCISAIPFKATRCPFCTSELKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V255</accession>
    <name>A0A0M2V255_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00468</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000062">
        <property type="protein sequence ID" value="KKO20799.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20799">
        <property type="protein sequence ID" value="KKO20799"/>
        <property type="gene ID" value="BROFUL_00468"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.583"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.102.30.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.1180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029433">
        <property type="entry name" value="DUF4438"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044909">
        <property type="entry name" value="TM_1086_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044910">
        <property type="entry name" value="TM_1086_SG_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14505">
        <property type="entry name" value="DUF4438"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20799.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="298" mass="31779" checksum="749EFFF93D79C264" modified="2015-11-11" version="1">METNEKNLVEISVIGEVSSPQSGSSPYSITPDGKPKVLPGIGGITYNVKVGDNAVRWEADHVEPCVSVKNKDREENGALNLLSCIGNLARVITGDAKGGTGVVTGKHGGIENVLVDFEDRTLEKLAIGDKILIRGVGVGLSFPGYQHIKPLNMSPGLLKALPIREDKTRHVLHVPVTHIIPAAIMGSGLGSQHCYRGDYDIQLFDKPTVEQHHLQSLRFGDIVAIMDADHTFGRIYKTGSVSIGVIVHSNCVTAGHGPGVTTLLTSAEGKIVPSLDSAANIGVYLKIGRFRKGTTRKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V286</accession>
    <name>A0A0M2V286_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FAD-dependent pyridine nucleotide-disulfide oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00031</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000006">
        <property type="protein sequence ID" value="KKO21236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21236">
        <property type="protein sequence ID" value="KKO21236"/>
        <property type="gene ID" value="BROFUL_00031"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="1">
        <location>
            <begin position="4"/>
            <end position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="355" mass="38760" checksum="872F0C88369F6383" modified="2015-11-11" version="1">MNTEYIIVGNGVAGTEAAKNIRKRDPCAEIMIFTREYYPFYSRPRIPELLAGEVALEAFFVYNLAWYHKNKIHLYLNSVVKEIDSRNKTITLADGSIFTYNKLLLATGSSGVLPPIEGITTAEGVFTLRSVEDTLTISHRTTGAKKVTLIGGGLLGIEAGNGLRKLGVSVTIIEMFDRLLPRQLNGEGAAMLQKQMEGMGLTFILGAKSKRIYEKGQTKILELADGRIIESDFILVSAGIAPNITLAKTAGISVNKGILVDNRMETNVPGVYAAGDAAEHKGRVYGIWPAAQRQGVVAGINMSGGDEIYTGTVPSTTLKVQVFVLLLWVISSKKARTLNKSNERIRRPFFIKSSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V290</accession>
    <name>A0A0M2V290_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Superoxide reductase</fullName>
            <ecNumber evidence="7">1.15.1.2</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_00036</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the desulfoferrodoxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.15.1.2" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000006">
        <property type="protein sequence ID" value="KKO21241.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21241">
        <property type="protein sequence ID" value="KKO21241"/>
        <property type="gene ID" value="BROFUL_00036"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050605">
        <property type="term" value="F:superoxide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.730">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002742">
        <property type="entry name" value="Desulfoferrodoxin_Fe-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036073">
        <property type="entry name" value="Desulfoferrodoxin_Fe-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01880">
        <property type="entry name" value="Desulfoferrodox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49367">
        <property type="entry name" value="SSF49367"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00332">
        <property type="entry name" value="neela_ferrous"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0249">Electron transport</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Desulfoferrodox" evidence="6">
        <location>
            <begin position="20"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO21241.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="122" mass="13526" checksum="D97396D6073998F5" modified="2015-11-11" version="1">MTSESTLFCQVNTLATGPADTAKKHVPVISVPEVVKVGQPFTVTIKVGEVSHVMENGHFIQFVDLYCGHIYISRVDFTAELSKPEVSLSIVLHHPGKRPLRVFTRCNLHGIWEGTKEVNVTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2F9</accession>
    <name>A0A0M2V2F9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00386</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000049">
        <property type="protein sequence ID" value="KKO20889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20889">
        <property type="protein sequence ID" value="KKO20889"/>
        <property type="gene ID" value="BROFUL_00386"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="20"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="106"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="133"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="60"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="161" mass="17475" checksum="F7913FB6E6278E1E" modified="2015-11-11" version="1">MQIFFIRGVRGVLRVGTGEYLSLIPLLLTAFGVIVPFSFIIGFIFPFSSKAVRIASTDHDGDGHAPASERKLQNSDSLSNPQCSIRNQKSEIQDGDTRDAAVDIGAVYVVESIGSLVGGLVFSFFMASRFHPFTIMTLLNAGMFALLTALLLLLDHHADDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2M4</accession>
    <name>A0A0M2V2M4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyltransferase family 2</fullName>
            <ecNumber evidence="3">2.4.1.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00329</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.-" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000040">
        <property type="protein sequence ID" value="KKO20949.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20949">
        <property type="protein sequence ID" value="KKO20949"/>
        <property type="gene ID" value="BROFUL_00329"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="243"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="9"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20949.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="279" mass="32525" checksum="04C6926E1AD93C6F" modified="2015-11-11" version="1">MNKPTAPISVVIPCFRCAQTIQRSVDSVAAQTHLPKEVMLVDDASDDDTLNVIMKLQNRYDKNWIRVVKLEHNGGPSVARNTGWEVATQPFIAFLDADDAWHPRKLEIQFGWMLAHPHVAMTVHNCTVVLSGMPDLTLPDTWRATPVIPYRFLLFSGRDGFSTPSIIMRRNLPYRFEPMKRHSEDYLFKLQIVLDGNETWRLELPLVFLYKARYGERGQTADLWKMEKGNLDTYWRLQAERRISWVLTIVLCAFSLLKYLRRVIVVYRRKCKRNAYKVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V334</accession>
    <name>A0A0M2V334_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00171</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the HepT RNase toxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000018">
        <property type="protein sequence ID" value="KKO21089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21089">
        <property type="protein sequence ID" value="KKO21089"/>
        <property type="gene ID" value="BROFUL_00171"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.211"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0110001">
        <property type="term" value="C:toxin-antitoxin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008201">
        <property type="entry name" value="HepT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037038">
        <property type="entry name" value="HepT-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01934">
        <property type="entry name" value="DUF86"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-1277">Toxin-antitoxin system</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00024207"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO21089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="117" mass="13978" checksum="953BBF81EC7B525F" modified="2015-11-11" version="1">MKRNAKLYISDILEYMERAESHIKSLGFEEFLKEEKTCDAVIRCIEVIGEATKNIPDEIRSKYHFIPWRDMAGMRDKIIHAYFTVDFETVWLVVKEEIPRLKPMIKRVSEDLENELR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPG7</accession>
    <name>A0A0M2UPG7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03291</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000301">
        <property type="protein sequence ID" value="KKO18013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18013">
        <property type="protein sequence ID" value="KKO18013"/>
        <property type="gene ID" value="BROFUL_03291"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="55"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="73"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="139" mass="15837" checksum="17B758191F4AAEFF" modified="2015-11-11" version="1">MPILIICAMVKSPKMSGLSSLSDSIENRMTGYRIPNISSTSPVFFGTVKKHSEERKVSHLQQMSTTEWDGSEDYVSPRGKSIRSHTDERRRGCHPPYPFYLRFLEIGPPRGCAPQPFRSSNHSESIRYGQRQVPVRLKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPU7</accession>
    <name>A0A0M2UPU7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03215</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000293">
        <property type="protein sequence ID" value="KKO18113.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18113">
        <property type="protein sequence ID" value="KKO18113"/>
        <property type="gene ID" value="BROFUL_03215"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18113.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="320" mass="38192" checksum="3AF893A0E6EA8AF1" modified="2015-11-11" version="1">MNSNRSMEHFVTLFDSKFLPLGMALHDSLMTHAQPFHLWILCMDEMVEKQLKQISLSHVTLIPLKEIETQELLAVKPGRTQGEYCWTLTPFTPHTVFDRDTTVERVTYLDADMFFFDDPRILLCELNQSGKHVLITEHAYAPEYDYLRPLCGRFCVQFTTFRSTIQAAKIMKWWQNKCLDWCFANFEDGRFGDQKYLDLWPDLFSEEIHVLKQVNKTLAPWNVRYFTNLISDNLNPVFFHFHNLRIIAPSRVRLYGDYRVGKKGERFYDLYFLRLSKSIQKLEHFNIPLSVIRPTKEKWALLKYFKRVYLSRTERYKNIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPX0</accession>
    <name>A0A0M2UPX0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Phosphopantetheine adenylyltransferase</fullName>
            <ecNumber evidence="6">2.7.7.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Dephospho-CoA pyrophosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Pantetheine-phosphate adenylyltransferase</fullName>
            <shortName evidence="6">PPAT</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">coaD</name>
        <name evidence="8" type="ORF">BROFUL_03187</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Reversibly transfers an adenylyl group from ATP to 4'-phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5 6">
            <text>(R)-4'-phosphopantetheine + ATP + H(+) = 3'-dephospho-CoA + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:19801"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57328"/>
            <dbReference type="ChEBI" id="CHEBI:61723"/>
            <dbReference type="EC" id="2.7.7.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="6">Cofactor biosynthesis; coenzyme A biosynthesis; CoA from (R)-pantothenate: step 4/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homohexamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the bacterial CoaD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.3" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18138">
        <property type="protein sequence ID" value="KKO18138"/>
        <property type="gene ID" value="BROFUL_03187"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3930"/>
    <dbReference type="UniPathway" id="UPA00241">
        <property type="reaction ID" value="UER00355"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004595">
        <property type="term" value="F:pantetheine-phosphate adenylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015937">
        <property type="term" value="P:coenzyme A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02163">
        <property type="entry name" value="PPAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00151">
        <property type="entry name" value="PPAT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004821">
        <property type="entry name" value="Cyt_trans-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001980">
        <property type="entry name" value="PPAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21342:SF1">
        <property type="entry name" value="PTHR21342:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01467">
        <property type="entry name" value="CTP_transf_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01020">
        <property type="entry name" value="LPSBIOSNTHSS"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01510">
        <property type="entry name" value="coaD_prev_kdtB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00125">
        <property type="entry name" value="cyt_tran_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6" id="KW-0173">Coenzyme A biosynthesis</keyword>
    <keyword evidence="1 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 6 8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="CTP_transf_like" evidence="7">
        <location>
            <begin position="5"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="9"/>
            <end position="10"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="9"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="17"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="41"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="73"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="87"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="88"/>
            <end position="90"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="98"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="123"/>
            <end position="129"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="6">
        <location>
            <position position="17"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022993"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00029346"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="166" mass="18910" checksum="1C608CEC987C1B54" modified="2015-11-11" version="1">MRKAVYPGTFDPVTYGHLDVIKRGSLVFDTLVVSVGCNPLKEALFSVDERMGMIREEVADLKNVEVDSFNGMLVDYLKTQKTTIILRGIRTVSDFEYEFQRALTNRVLNKEVETVFVMTSEQYSFLNSTLIKEAVSLGGSVSQFVPPGVERRLMQKFKHAYRKNVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ14</accession>
    <name>A0A0M2UQ14_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03127</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Fur family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000287">
        <property type="protein sequence ID" value="KKO18178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18178">
        <property type="protein sequence ID" value="KKO18178"/>
        <property type="gene ID" value="BROFUL_03127"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3862"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07153">
        <property type="entry name" value="Fur_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002481">
        <property type="entry name" value="FUR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043135">
        <property type="entry name" value="Fur_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33202">
        <property type="entry name" value="PTHR33202"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01475">
        <property type="entry name" value="FUR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007957"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="144" mass="17114" checksum="7583B05C632CB2B2" modified="2015-11-11" version="1">MLSKEDIFREFLESKNLKFTTERQAILERAFANHKHFEADELLVDLRQNKLKISKATIYRTLSLLVKSGLLREVIFGERHAHYEQVYGHEHHDHLVCNGCGKIIEFVENRIEKLQDEVCRRNKFEPESHRLQIQGFCEDCKKMT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ25</accession>
    <name>A0A0M2UQ25_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Zinc metalloprotease</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BROFUL_03330</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="8 10">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="8 10">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the peptidase M50B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000305">
        <property type="protein sequence ID" value="KKO17987.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17987">
        <property type="protein sequence ID" value="KKO17987"/>
        <property type="gene ID" value="BROFUL_03330"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4103"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008915">
        <property type="entry name" value="Peptidase_M50"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016483">
        <property type="entry name" value="UCP006404_Pept_M50_CBS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02163">
        <property type="entry name" value="Peptidase_M50"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006404">
        <property type="entry name" value="UCP006404_Pept_M50_CBS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 11" id="KW-0129">CBS domain</keyword>
    <keyword evidence="8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="8 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="8" id="KW-0645">Protease</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="8 10" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="54"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="83"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="112"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="196"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="12">
        <location>
            <begin position="251"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="12">
        <location>
            <begin position="314"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="72"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="76"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="166"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRNR" id="PIRNR006404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR006404-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR006404-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO17987.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="370" mass="41388" checksum="95FB6C7882044554" modified="2015-11-11" version="1">MNATLAQSSWKVAKIMGIPIRVHFSWFIVFGLITWSLSTRYFPKAAPDLPAATYWIKSVLAALLLFASVAFHELSHSYIAKKYRVSVTGITLFIFGGVAQMKGEPPHPRAEFRIAIAGPLSSFLLSGLFFLVSENTSGGSRALFSYLMRVNLILGAFNLIPGFPMDGGRILRAALWSRTKDFFYATQKASIFGQRIALFFLLFGLFSIFSGSSGGLWLLLIGWFLYMAAQSSQQQSTLQEALLTIKVKNVMATDIVTIDSSIPLEEAVDKYFLRYGYGGFPVTDNGKFLGMITLKEIKNVSRTDWREVKVSDILIPHDNKWEMTPDSDVMKALELMIKEDKGRLVVMKNEKIVGLITRNGIARYLQIMGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ74</accession>
    <name>A0A0M2UQ74_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03278</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000300">
        <property type="protein sequence ID" value="KKO18032.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18032">
        <property type="protein sequence ID" value="KKO18032"/>
        <property type="gene ID" value="BROFUL_03278"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18032.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="46" mass="5189" checksum="8593A21E16899D2B" modified="2015-11-11" version="1">MDFVVEHGENSTHILNAVSPAFTSAFSFSKFIVDEVEKKMMLKTKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQD9</accession>
    <name>A0A0M2UQD9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Release factor glutamine methyltransferase</fullName>
            <shortName evidence="6">RF MTase</shortName>
            <ecNumber evidence="6">2.1.1.297</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">N5-glutamine methyltransferase PrmC</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Protein-(glutamine-N5) MTase PrmC</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Protein-glutamine N-methyltransferase PrmC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">prmC</name>
        <name evidence="9" type="ORF">BROFUL_03035</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 6">Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>L-glutaminyl-[peptide chain release factor] + S-adenosyl-L-methionine = H(+) + N(5)-methyl-L-glutaminyl-[peptide chain release factor] + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42896"/>
            <dbReference type="Rhea" id="RHEA-COMP:10271"/>
            <dbReference type="Rhea" id="RHEA-COMP:10272"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30011"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:61891"/>
            <dbReference type="EC" id="2.1.1.297"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.297" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18308.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18308">
        <property type="protein sequence ID" value="KKO18308"/>
        <property type="gene ID" value="BROFUL_03035"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3747"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102559">
        <property type="term" value="F:protein-(glutamine-N5) methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036009">
        <property type="term" value="F:protein-glutamine N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018364">
        <property type="term" value="P:peptidyl-glutamine methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02126">
        <property type="entry name" value="RF_methyltr_PrmC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004556">
        <property type="entry name" value="HemK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040758">
        <property type="entry name" value="PrmC_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019874">
        <property type="entry name" value="Release_fac_Glu-N5_MeTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007848">
        <property type="entry name" value="Small_mtfrase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05175">
        <property type="entry name" value="MTS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17827">
        <property type="entry name" value="PrmC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00536">
        <property type="entry name" value="hemK_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03534">
        <property type="entry name" value="RF_mod_PrmC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6 9" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4 6 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PrmC_N" evidence="8">
        <location>
            <begin position="53"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="MTS" evidence="7">
        <location>
            <begin position="153"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="6">
        <location>
            <begin position="169"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="240"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="192"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="240"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF05175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF17827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18308.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="336" mass="37686" checksum="B2FA45E7C04F3CFE" modified="2015-11-11" version="1">MKMPSEVFGANASQRDSEQHRNCRAAFSIPHDDPTIASLKNESSGKLTVSGLIRLASRELDARKIDTPLLDAEVILAHLLGCRRIDLYLHPDKPVETDVSTAYQNAIRRRGHNVPVSYITRHAEFMSLDFYVDERVLIPRPETELLVEAVIEKSQNMSCKDEIILVDIGAGSGAIAITLAKKIDKARIFAVDISADALSVARMNAGRHGVLHKITFVCGDTFEPLTAYGLESKVHFIVSNPPYVSSGEFRHLPKEVRDYEPYVALVSGPDGLRMFKRIITHVKAWLRPSGFLLFEVGEKQAQTVLQFLEDTGWFNKTAFIKDYQNINRIVVAQREK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQF9</accession>
    <name>A0A0M2UQF9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_03406</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000312">
        <property type="protein sequence ID" value="KKO17895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17895">
        <property type="protein sequence ID" value="KKO17895"/>
        <property type="gene ID" value="BROFUL_03406"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07185">
        <property type="entry name" value="OmpA_C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006664">
        <property type="entry name" value="OMP_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006665">
        <property type="entry name" value="OmpA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006690">
        <property type="entry name" value="OMPA-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036737">
        <property type="entry name" value="OmpA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028974">
        <property type="entry name" value="TSP_type-3_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00691">
        <property type="entry name" value="OmpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00092">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01021">
        <property type="entry name" value="OMPADOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103088">
        <property type="entry name" value="SSF103088"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103647">
        <property type="entry name" value="SSF103647"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01068">
        <property type="entry name" value="OMPA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51123">
        <property type="entry name" value="OMPA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="1 3" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VWFA" evidence="4">
        <location>
            <begin position="57"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="domain" description="OmpA-like" evidence="5">
        <location>
            <begin position="283"/>
            <end position="398"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO17895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="398" mass="43785" checksum="18ABF71DFD82A8CA" modified="2015-11-11" version="1">MRKIYRPASIFIALITFFTGCAQLASLKKPIGPMESFVPQNLEAESQDVQYVSKIESFVIILDASASMKEEYNGIVNKGHSKFAVAKDILMRMNNTLPEVEVNSAMVTFGHEFLKPLDKTFIVYELTKHSRGLLEGMLNGITIPDGCSPAGNAIKDAKNLLLTSGGQNAVILISDGEQLIGSPLKRVHDLKEMYGERVCLYTIFVGNTVEGEKELQELVRGVPCGFSVTADEIASSENMAEFVKKVFLTAIPKQVSTIDIDTDGDGVYDKDDECPDTPKGAIVDSRGCWVVKGVTFDYKKWDIKEEFNSNLGNIVDILQKNPDMSIRIEGHTDNIGSMAYNIDLSEKRARAVKDYLVGKGIQASRISTVGFGYKNPIAPNDTEAGRALNRRAEIVPIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQI3</accession>
    <name>A0A0M2UQI3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02957</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000278">
        <property type="protein sequence ID" value="KKO18358.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18358">
        <property type="protein sequence ID" value="KKO18358"/>
        <property type="gene ID" value="BROFUL_02957"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="63"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="89"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="118"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="173"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18358.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="308" mass="34305" checksum="75379068EE1378F6" modified="2015-11-11" version="1">MAITLLIVPRFVFRVSQKERNKCLQTFKAQIKVSMSQTDRDHKPAEPAIAPHHTKSMNTWKHMVAHVCIWFLVIALVMVYFTSTGSPQAGLLEVGVAAFIFIALFHLVMKFFPLISKIITSIIAIGFGVALIFVNYHYLKVVKTDASFKQLLVGDLLVHKIVKTIQKEPITSLANKERPQTVPENKPENLSPEVSFDQQTTPIAKPMSSDLNSVILQVTPLAPALTTKTFFTSEKNAIHALTNNTSGEIAHLPFTVKECAPTIRDVAERYDLSYAILPVALRDLPSAELKEPKMRPPLSEKVVSIPVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQS6</accession>
    <name>A0A0M2UQS6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Diguanylate cyclase/phosphodiesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02877</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000270">
        <property type="protein sequence ID" value="KKO18443.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18443">
        <property type="protein sequence ID" value="KKO18443"/>
        <property type="gene ID" value="BROFUL_02877"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01590">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13185">
        <property type="entry name" value="GAF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00065">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GGDEF" evidence="1">
        <location>
            <begin position="435"/>
            <end position="568"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18443.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="574" mass="65217" checksum="A653E424F96C5930" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQS8</accession>
    <name>A0A0M2UQS8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03316</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000302">
        <property type="protein sequence ID" value="KKO18005.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18005">
        <property type="protein sequence ID" value="KKO18005"/>
        <property type="gene ID" value="BROFUL_03316"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18005.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="53" mass="6159" checksum="0086E067B54FAB78" modified="2015-11-11" version="1">MSERLLRFTRNDNMQCTIKVHGRCHCEGPFPKQSPRFHNGELVAALLRYSITV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQV6</accession>
    <name>A0A0M2UQV6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Gly-zipper_Omp domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03062</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000284">
        <property type="protein sequence ID" value="KKO18252.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18252">
        <property type="protein sequence ID" value="KKO18252"/>
        <property type="gene ID" value="BROFUL_03062"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3780"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039567">
        <property type="entry name" value="Gly-zipper"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13488">
        <property type="entry name" value="Gly-zipper_Omp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Gly-zipper_Omp" evidence="1">
        <location>
            <begin position="81"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13488"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18252.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="159" mass="16474" checksum="4BF0254E6F3F617A" modified="2015-11-11" version="1">MMRRKVYVGSIVLGILGATVPVLAQNLIIYPAKGQSQEQMEKDKFECYSWAKQQTGFDPMVASTTSPAASQGSTEGGVVKGAAKGALLGAGIGAIAGDAGKGAAIGAVSGGAFGGLKSRNQRKQAAQVEQQQTAQTNERINEYNRAYGACLEAKGYTVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQW3</accession>
    <name>A0A0M2UQW3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">N-acetyl-gamma-glutamyl-phosphate reductase</fullName>
            <shortName evidence="4">AGPR</shortName>
            <ecNumber evidence="4">1.2.1.38</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">N-acetyl-glutamate semialdehyde dehydrogenase</fullName>
            <shortName evidence="4">NAGSA dehydrogenase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">argC</name>
        <name evidence="7" type="ORF">BROFUL_02802</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the NADPH-dependent reduction of N-acetyl-5-glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>N-acetyl-L-glutamate 5-semialdehyde + NADP(+) + phosphate = H(+) + N-acetyl-L-glutamyl 5-phosphate + NADPH</text>
            <dbReference type="Rhea" id="RHEA:21588"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29123"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:57936"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.2.1.38"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4">Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 3/4.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.38" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000265">
        <property type="protein sequence ID" value="KKO18478.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18478">
        <property type="protein sequence ID" value="KKO18478"/>
        <property type="gene ID" value="BROFUL_02802"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3464"/>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00108"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003942">
        <property type="term" value="F:N-acetyl-gamma-glutamyl-phosphate reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00150">
        <property type="entry name" value="ArgC_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023013">
        <property type="entry name" value="AGPR_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000706">
        <property type="entry name" value="AGPR_type-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000534">
        <property type="entry name" value="Semialdehyde_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012280">
        <property type="entry name" value="Semialdhyde_DH_dimer_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01118">
        <property type="entry name" value="Semialdhyde_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02774">
        <property type="entry name" value="Semialdhyde_dhC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00859">
        <property type="entry name" value="Semialdhyde_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01850">
        <property type="entry name" value="argC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01224">
        <property type="entry name" value="ARGC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="4" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 4" id="KW-0521">NADP</keyword>
    <keyword evidence="3 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Semialdhyde_dh" evidence="6">
        <location>
            <begin position="3"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="active site" evidence="4 5">
        <location>
            <position position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18478.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="348" mass="39324" checksum="4D51467BD5AE9AA8" modified="2015-11-11" version="1">MLRVGIIGATAYTSLELIKILLRHPEVKITYLGVRRTDRPRISDIFPTLKNLLDLKCETIEQKEVPENIDLAFITLPPTISMQYVPLFIQKSIKVIDFSADYRFRDKSLYERWYKTQHTDSKGIETAVYGLPELFREKIKKARLVGNPGCYTTATILALAPLLMKGLVFPEDIIVDAKSGVSGRGREPKEDTHYCECNENIEAYSVGGHRHSPEIEHILSMRTNQKVSIQFVPHLIPMNRGILCTIYAKPKHGMTVGANGHSPFSDHEVHKLYKEFYGNGPFIRLKEGHETPRTKDVTYTNFCDIATKVTENRIVILSAIDNLIKGASGQAVQNMNVMCGFDEKTGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URA8</accession>
    <name>A0A0M2URA8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Sec-independent protein translocase protein TatA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">tatA</name>
        <name evidence="8" type="ORF">BROFUL_03146</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Forms a complex with TatC.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the TatA/E family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000288">
        <property type="protein sequence ID" value="KKO18165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18165">
        <property type="protein sequence ID" value="KKO18165"/>
        <property type="gene ID" value="BROFUL_03146"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033281">
        <property type="term" value="C:TAT protein transport complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008320">
        <property type="term" value="F:protein transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043953">
        <property type="term" value="P:protein transport by the Tat complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00236">
        <property type="entry name" value="TatA_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003369">
        <property type="entry name" value="TatA/B/E"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006312">
        <property type="entry name" value="TatA/E"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02416">
        <property type="entry name" value="TatA_B_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01411">
        <property type="entry name" value="tatAE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 7" id="KW-0653">Protein transport</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0811">Translocation</keyword>
    <keyword evidence="2 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1 7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO18165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="71" mass="7892" checksum="44ADE8B7F69E2F3E" modified="2015-11-11" version="1">MFSMPGGWEWLIILIVALLIFGKRLPEVMKSLGRGIVEFKKGVKGVEDDVEDASSKSAQKKIDTEKDVAKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URM7</accession>
    <name>A0A0M2URM7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">RNA polymerase sigma factor for flagellar operon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">fliA</name>
        <name evidence="7" type="ORF">BROFUL_03022</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18295.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18295">
        <property type="protein sequence ID" value="KKO18295"/>
        <property type="gene ID" value="BROFUL_03022"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3730"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed 5'-3' RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000943">
        <property type="entry name" value="RNA_pol_sigma70"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007630">
        <property type="entry name" value="RNA_pol_sigma70_r4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012845">
        <property type="entry name" value="RNA_pol_sigma_FliA_WhiG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04545">
        <property type="entry name" value="Sigma70_r4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000770">
        <property type="entry name" value="RNA_pol_sigma-SigE/K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00046">
        <property type="entry name" value="SIGMA70FCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02479">
        <property type="entry name" value="FliA_WhiG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0966">Cell projection</keyword>
    <keyword evidence="7" id="KW-0969">Cilium</keyword>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-0282">Flagellum</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0731">Sigma factor</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="5">
        <location>
            <begin position="22"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4" evidence="6">
        <location>
            <begin position="195"/>
            <end position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18295.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="254" mass="29091" checksum="3F18A1B4E9BB3702" modified="2015-11-11" version="1">MGAVNKDKSGYTHENLVRRDKLIMENLPLVKYVVGKIMIYLPSFVDKEDLIEYGILGLLEAEEKYDPGNNTKFGTYAIPRIRGAILDHLRSQDWLPRSMRDKASMVKGAYMALGQKLNRPPSSEEMAAELKMDPAEWEKLLTGISLGTFLSLEDYYQKSDKTGESARCQEIRDPKSYDPLKDLETKEEKALLANAIAELPKKERLVISLYYFEDLMLREISEIMGISESRISQLHHRALFLLRAKMSKMSMNTC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URM8</accession>
    <name>A0A0M2URM8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">ABC transporter permease component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_02555</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000238">
        <property type="protein sequence ID" value="KKO18723.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18723">
        <property type="protein sequence ID" value="KKO18723"/>
        <property type="gene ID" value="BROFUL_02555"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003838">
        <property type="entry name" value="ABC3_permease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025857">
        <property type="entry name" value="MacB_PCD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02687">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12704">
        <property type="entry name" value="MacB_PCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="22"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="160"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="246"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="348"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="domain" description="MacB_PCD" evidence="8">
        <location>
            <begin position="24"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="domain" description="FtsX" evidence="7">
        <location>
            <begin position="274"/>
            <end position="376"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF12704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18723.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="383" mass="42203" checksum="AD1A3F2500146F1C" modified="2015-11-11" version="1">MNKHINLLLLATENLLRHGTKSVVVCLCIIAILTPFITAIAISEGVREQSLISVNAGADLYLTFDEFGRNSAIPLKHLDEIKKVYGVTRAIPRIIGRGYLQNKLAIIIGINKEDIPESVSFISGRVFENAGEVVIGHELARHFRLNPGDQFSMRCQQRKVFTVVGIFSADSGIWGASLIGMSFNDAGALFGKQDVATDIQLHTLPGHNSAIATDLYDIFQHEAYRLQDKQIIELYVKKGFMLKEGIFSALYVVAFALGVPAILVASGFGLSERKKEIGIMKATGWQTLEVLELISFEQFLISLLGASIAIVLSLFWIKIFHGVFIAPFFIAEMPMLPAFTLPARFLPLPCLLSFFVAFLLTMVGSVYSTWRASTVSPVVSMKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URV6</accession>
    <name>A0A0M2URV6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Ion_trans domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_02709</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000251">
        <property type="protein sequence ID" value="KKO18592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18592">
        <property type="protein sequence ID" value="KKO18592"/>
        <property type="gene ID" value="BROFUL_02709"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3351"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005216">
        <property type="term" value="F:ion channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.350">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005821">
        <property type="entry name" value="Ion_trans_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027359">
        <property type="entry name" value="Volt_channel_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00520">
        <property type="entry name" value="Ion_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="21"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="55"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="domain" description="Ion_trans" evidence="5">
        <location>
            <begin position="25"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="123" mass="13868" checksum="F016DF909D221E6D" modified="2015-11-11" version="1">MKHNIKSSAYKIMHEVSNADTRVRAFHVSLTTLILLNVLAVILETVESIATQYRVFFTAFDVFSIGVFTIEYLLRLWTCTADARFRGAVKGRARFTVTPFSLIDLMAILHFTYPCSSPSICGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US10</accession>
    <name>A0A0M2US10_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02409</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000231">
        <property type="protein sequence ID" value="KKO18863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18863">
        <property type="protein sequence ID" value="KKO18863"/>
        <property type="gene ID" value="BROFUL_02409"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="456"/>
            <end position="473"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="485"/>
            <end position="503"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="532" mass="62401" checksum="E7DF7E558143536B" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USF2</accession>
    <name>A0A0M2USF2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Methyltransf_25 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02287</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO18993.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18993">
        <property type="protein sequence ID" value="KKO18993"/>
        <property type="gene ID" value="BROFUL_02287"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041698">
        <property type="entry name" value="Methyltransf_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13649">
        <property type="entry name" value="Methyltransf_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Methyltransf_25" evidence="1">
        <location>
            <begin position="181"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18993.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="354" mass="41158" checksum="6825EA937B94ED3C" modified="2015-11-11" version="1">MNQSVDSPNIKLLLSQSHPQMFLTDRLIRFVEEEGISELLQSMRRFTIEEALEAFREKLGYKLQDRVRLRMAKVIVDLLYECEYLEKKGERYFWIEGKGFETKLSADGYKVAKDAFKGQVDFFERCIMYADKFLNGNPPLYSFDSASTGIWEEFLGNTEFRFARSVLINLLFSGRNDNATVLALCYGPGFDILQMQEQYNIRVTALDFKDVFQSQASRRILNPNSVKWVQSALWKGFGTPLPFHDTMFDAVFFACADPYIPEESREFVYKDIFRVLKHGGILGIVTRSYPDTERKYVKDPFVRKGTLCHDFSESVCEGWCGFYHPQESENLFKTIGYHVNTIMLNASVWRLDKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USR0</accession>
    <name>A0A0M2USR0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Probable membrane transporter protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_02657</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the 4-toluene sulfonate uptake permease (TSUP) (TC 2.A.102) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000243">
        <property type="protein sequence ID" value="KKO18640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18640">
        <property type="protein sequence ID" value="KKO18640"/>
        <property type="gene ID" value="BROFUL_02657"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3295"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002781">
        <property type="entry name" value="TM_pro_TauE-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01925">
        <property type="entry name" value="TauE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="7"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="75"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="99"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="138"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="186"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="208"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363041"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="248" mass="26749" checksum="F99B66AC8AB73D7D" modified="2015-11-11" version="1">MEIWQFFVVFAVGALAGFMNVLAGGGSILTLPMLIFLGLPPAVANGTNRLAVVVQSIFAVAGFRSKGVSDFKSSLILSCPALLGGLIGAQLAVAVSDQVFKKALAIIMIFILGFILWDPIRKKHDTIHHKEDTSHLSTSRRIAIMFFLFFAGIYGGFVQAGVGFLIIMALNIIGGLNLVKTNSHKVFIVGINALFSLLVFVFHNKIYWIIGLVLAAGNGLGGWIGSHFAVSKGERFIRVVLTFVSLPW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USS1</accession>
    <name>A0A0M2USS1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Putative aminopeptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_03269</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the peptidase M24B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000299">
        <property type="protein sequence ID" value="KKO18046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18046">
        <property type="protein sequence ID" value="KKO18046"/>
        <property type="gene ID" value="BROFUL_03269"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4030"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004177">
        <property type="term" value="F:aminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029149">
        <property type="entry name" value="Creatin/AminoP/Spt16_NTD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036005">
        <property type="entry name" value="Creatinase/aminopeptidase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000587">
        <property type="entry name" value="Creatinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000994">
        <property type="entry name" value="Pept_M24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001131">
        <property type="entry name" value="Peptidase_M24B_aminopep-P_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01321">
        <property type="entry name" value="Creatinase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00557">
        <property type="entry name" value="Peptidase_M24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53092">
        <property type="entry name" value="SSF53092"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55920">
        <property type="entry name" value="SSF55920"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00491">
        <property type="entry name" value="PROLINE_PEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0645">Protease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Creatinase_N" evidence="5">
        <location>
            <begin position="4"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M24" evidence="4">
        <location>
            <begin position="135"/>
            <end position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU000590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18046.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="356" mass="40322" checksum="8C29E4B614A47D73" modified="2015-11-11" version="1">MNCLKKIKQTLTEEHVDGFLVTNAVNIHYITKFTGSESILLITRERDYLFTDFRYVEQAQKDIPWITVVEKKVSLERTISAKLKRLKIKELSIEALFLTVHQYHEILGSYGGIHLIPTKGIVEEYRKRKTDQELEKIRTAISIAEKAYNRVEKKIGVGLSEKKIADILELEIRNHGGERSAFEIICATGQRASLPHAHPTERIIGEKEAILIDWGACFQFYNSDLTRVRFIDKISPDYKKIYQIVLDAQGFAIDSIKPGRKAKEIDSAARSYIEKKGFAKCFGHGLGHGIGLEVHEGPVINSRSKEVLEENMVFTVEPGIYIPGWGGIRIEDMVLVTPSGCEVLSRIPKRLEEIAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USS4</accession>
    <name>A0A0M2USS4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02398</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000229">
        <property type="protein sequence ID" value="KKO18897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18897">
        <property type="protein sequence ID" value="KKO18897"/>
        <property type="gene ID" value="BROFUL_02398"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18897.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="146" mass="16118" checksum="0B84C49731C7C524" modified="2015-11-11" version="1">MESVNITISAGAFLAILAVLVLFRAKNSKYEVRPTDIVVAVLPIVLFLLVTGKIQKFEFGEFKIESAFVKASTSSIASQVTPLRGLPSEPVRIDPKLGVAEIPHLIERKTEGLLFRLGHGGYWGPAIEEYLVSLVKYPFLRYSITV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USY1</accession>
    <name>A0A0M2USY1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cold shock protein (CspB)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02601</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000239">
        <property type="protein sequence ID" value="KKO18720.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18720">
        <property type="protein sequence ID" value="KKO18720"/>
        <property type="gene ID" value="BROFUL_02601"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04458">
        <property type="entry name" value="CSP_CDS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012156">
        <property type="entry name" value="Cold_shock_CspA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011129">
        <property type="entry name" value="CSD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019844">
        <property type="entry name" value="CSD_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002059">
        <property type="entry name" value="CSP_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00313">
        <property type="entry name" value="CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002599">
        <property type="entry name" value="Cold_shock_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00050">
        <property type="entry name" value="COLDSHOCK"/>
    </dbReference>
    <dbReference type="SMART" id="SM00357">
        <property type="entry name" value="CSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00352">
        <property type="entry name" value="CSD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51857">
        <property type="entry name" value="CSD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CSD" evidence="3">
        <location>
            <begin position="1"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18720.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="68" mass="7469" checksum="4BE1D77A7A6D486E" modified="2015-11-11" version="1">MAIGKVKWFDAKKGFGFIEQDGGGDVFVHYSNIASEGFKTLEDGEKVEFDIVEGAKGLQAQKVMRLNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTC9</accession>
    <name>A0A0M2UTC9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF2344 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01978</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19318">
        <property type="protein sequence ID" value="KKO19318"/>
        <property type="gene ID" value="BROFUL_01978"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018768">
        <property type="entry name" value="DUF2344"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10105">
        <property type="entry name" value="DUF2344"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03936">
        <property type="entry name" value="sam_1_link_chp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF2344" evidence="1">
        <location>
            <begin position="1"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10105"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="186" mass="20756" checksum="3046AF9898A4A14F" modified="2015-11-11" version="1">MKLFERAIRRANIPIAMSKGFNPHPKLSIPLALGVGIPGKDEVLELVLIESMPPENIIERLSLQLPKEIHIHSGEVVSDAEKSSVRDVLYEVVFKDPGFLNTVKVDEFLQQPSLVVNREKNGRQKPFDIRPSVQEIMVQPDRLVLSIKVENEGMAKPEEVICALLGNGKKAIFEITRTKINLTSSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTG2</accession>
    <name>A0A0M2UTG2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Flagellar ATPase fliI</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">fliI</name>
        <name evidence="6" type="ORF">BROFUL_03008</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18281">
        <property type="protein sequence ID" value="KKO18281"/>
        <property type="gene ID" value="BROFUL_03008"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3716"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030257">
        <property type="term" value="C:type III protein secretion system complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046961">
        <property type="term" value="F:proton-transporting ATPase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030254">
        <property type="term" value="P:protein secretion by the type III secretion system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020003">
        <property type="entry name" value="ATPase_a/bsu_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004100">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000194">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_nucl-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005714">
        <property type="entry name" value="ATPase_T3SS_FliI/YscN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040627">
        <property type="entry name" value="T3SS_ATPase_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00006">
        <property type="entry name" value="ATP-synt_ab"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02874">
        <property type="entry name" value="ATP-synt_ab_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18269">
        <property type="entry name" value="T3SS_ATPase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01026">
        <property type="entry name" value="fliI_yscN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00152">
        <property type="entry name" value="ATPASE_ALPHA_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0966">Cell projection</keyword>
    <keyword evidence="6" id="KW-0969">Cilium</keyword>
    <keyword evidence="6" id="KW-0282">Flagellum</keyword>
    <keyword evidence="3" id="KW-0653">Protein transport</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="AAA" evidence="5">
        <location>
            <begin position="161"/>
            <end position="342"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="456" mass="49991" checksum="45109CB389DCF2E0" modified="2015-11-11" version="1">MIKQRIHFEQYRKHLSDVIPVRYAGKVVHVAGLVIEANGPSVPIGDLCYIHINNGHAPIPAEVVGFKEKRILLMPIGELDRIRPDAHVTASGLPMRIKVGMRLMGRIVGGLGEAIDGKGSIDAGEYRSIYNSPPDPLTRNRIKEVLRTGVRVLDGLCTCGKGQRMGIFAGSGVGKSTLMGMIARNSEADVNVIALIGERGREVREFVEKNLGLDGQKKSVIVSVTSDKPALLRVKGAYIASTIAEYFRDQGMQVMLLVDSVTRFANAQREIGLAIGEPPTVKGYPPSVFALLPKLLERSGTGLKGNITGLYTVLVDGDDMNEPIADAVRGILDGHLVLSRMLANQNHYPAIDILESISRCMDDIVPLEHKKAATELKSLYATYKESEDLINIGAYAKGSNSKVDYSISMIDRIKEYLKQEVVEEIKFDDAVARLINLFANNEGMKRNTVSKMERQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTK1</accession>
    <name>A0A0M2UTK1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Flagellar hook assembly protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">flgD</name>
        <name evidence="3" type="ORF">BROFUL_02120</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the FlgD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19137.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19137">
        <property type="protein sequence ID" value="KKO19137"/>
        <property type="gene ID" value="BROFUL_02120"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2646"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044781">
        <property type="term" value="P:bacterial-type flagellum organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005648">
        <property type="entry name" value="FlgD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03963">
        <property type="entry name" value="FlgD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1005">Bacterial flagellum biogenesis</keyword>
    <keyword evidence="3" id="KW-0966">Cell projection</keyword>
    <keyword evidence="3" id="KW-0969">Cilium</keyword>
    <keyword evidence="3" id="KW-0282">Flagellum</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010577"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19137.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="134" mass="14465" checksum="145C99E89DB9A388" modified="2015-11-11" version="1">MAVTSTSGISSEISMNNFLTLFVTQLQNQNPLDPTDNSEFMSQLAQFSTLEQEQQQTGYLERLASIDTAKLQLDQISMASAFIGKMVTFSSDSKSEITSKGVVEGVQLEKNGTVSFVINGSAVSISNLIKVSDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTP7</accession>
    <name>A0A0M2UTP7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Glutamate-5-semialdehyde dehydrogenase</fullName>
            <ecNumber evidence="3">1.2.1.41</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">proA</name>
        <name evidence="9" type="ORF">BROFUL_02960</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>L-glutamate 5-semialdehyde + NADP(+) + phosphate = H(+) + L-glutamyl 5-phosphate + NADPH</text>
            <dbReference type="Rhea" id="RHEA:19541"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58066"/>
            <dbReference type="ChEBI" id="CHEBI:58274"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.2.1.41"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-proline biosynthesis; L-glutamate 5-semialdehyde from L-glutamate: step 2/2.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.41" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000278">
        <property type="protein sequence ID" value="KKO18361.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18361">
        <property type="protein sequence ID" value="KKO18361"/>
        <property type="gene ID" value="BROFUL_02960"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3664"/>
    <dbReference type="UniPathway" id="UPA00098">
        <property type="reaction ID" value="UER00360"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004350">
        <property type="term" value="F:glutamate-5-semialdehyde dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055129">
        <property type="term" value="P:L-proline biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd07079">
        <property type="entry name" value="ALDH_F18-19_ProA-GPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00412">
        <property type="entry name" value="ProA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020593">
        <property type="entry name" value="G-glutamylP_reductase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012134">
        <property type="entry name" value="Glu-5-SA_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000965">
        <property type="entry name" value="GPR_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000151">
        <property type="entry name" value="GPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00407">
        <property type="entry name" value="proA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01223">
        <property type="entry name" value="PROA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0521">NADP</keyword>
    <keyword evidence="7 9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-0641">Proline biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="8">
        <location>
            <begin position="72"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="394"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004985"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022650"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18361.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="394" mass="42810" checksum="9CCC70D5F188AAE7" modified="2015-11-11" version="1" fragment="single">MNIENYVNQIVKHAKTASRFIASANTTIKNTALHYLTEGILSSKDLLKAENEKDIAVAKKAGLSEAIIDRLRLTDSRIQGMAEGVRQIIHLADPVGELLWGQTRPNGLQIQKVRVPIGVIAIIYESRPNVTADAASLCLKAGNAVILRGGKESIHSNIAIYKILASALEKAGLDTRCIQLVEVVEREAIDFLLKADQYVDAVIPRGGESLIRAVVEKSTIPVIKHYKGVCHTYVDEFANLTMAAEICFNAKVQRPATCNAMETMLVHEKIASVFLPGVAKKLHDAGVEIRGCNKSCGILGNIKHATADDYYSEYLDLILNVKVVATIDDAISHITKYGSNHSDAIVTDHVGNALKFTKEVDSAAVYVNASTRFTDGYEFGMGAEIGISTDKLHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTS0</accession>
    <name>A0A0M2UTS0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01842</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000190">
        <property type="protein sequence ID" value="KKO19463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19463">
        <property type="protein sequence ID" value="KKO19463"/>
        <property type="gene ID" value="BROFUL_01842"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="346" mass="38514" checksum="3DB14A98D2903912" modified="2015-11-11" version="1">MIETSKVLQDNKPIDIGVQFGAYNSKETSSFREVIGDALQRRGQEMNKMHHYDTITSRIEGGAFSLLERNTFETSLTCAEGKKNTKPMSLKKQLQKYKEDQLLSNPGGDYFDLKKGTKGVDCRKDQSQFTVRVGKDIKDAGENFVNIFKDMGAGASFQYVDKDGMIQEGKKVGLGGTMVHFFKDMAGGMTLGKYATDGEERPANALETIKHFFKKIFVDALFKDIVVGVPRSAIHIGENAVFACLNLAEVIPDATIGNYKKGQKVTTEVFDDAQVLVDFVTDIVPMGEAGARTKAITFKKGLKGFPFIYNITSPEHGMVDEQWRYVRNTPFRKTIESVATLIPVRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTT6</accession>
    <name>A0A0M2UTT6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF1858 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01817</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000189">
        <property type="protein sequence ID" value="KKO19478.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19478">
        <property type="protein sequence ID" value="KKO19478"/>
        <property type="gene ID" value="BROFUL_01817"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3910.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.210.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036927">
        <property type="entry name" value="Cyt_c_oxase-like_su1_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015077">
        <property type="entry name" value="DUF1858"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010266">
        <property type="entry name" value="NnrS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038062">
        <property type="entry name" value="ScdA-like_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08984">
        <property type="entry name" value="DUF1858"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05940">
        <property type="entry name" value="NnrS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140683">
        <property type="entry name" value="SSF140683"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81442">
        <property type="entry name" value="SSF81442"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="86"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="132"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="161"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="191"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="230"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="272"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="306"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="336"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="379"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="420"/>
            <end position="438"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="450"/>
            <end position="468"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="480"/>
            <end position="499"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1858" evidence="2">
        <location>
            <begin position="521"/>
            <end position="578"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19478.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="594" mass="67853" checksum="E43C1B2E692E2A0C" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU54</accession>
    <name>A0A0M2UU54_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methicillin/oxacillin resistance regulatory protein MecI (Methicillin repressor)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">mecI</name>
        <name evidence="2" type="ORF">BROFUL_01929</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the BlaI transcriptional regulatory family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000197">
        <property type="protein sequence ID" value="KKO19357.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19357">
        <property type="protein sequence ID" value="KKO19357"/>
        <property type="gene ID" value="BROFUL_01929"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005650">
        <property type="entry name" value="BlaI_family"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34134">
        <property type="entry name" value="PTHR34134"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03965">
        <property type="entry name" value="Penicillinase_R"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19357.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="131" mass="15885" checksum="3755140B46F79C91" modified="2015-11-11" version="1">MRKELKFNFNPFKEGLNHVLGTLEKDIMEALWKRGESSVKDILEDLPAKRNISYSAVITVTNRMTKKGLLSKRKVGKAYFYKPLYTKEDFLRWYQKKLWKEFPDFLSNQQWCTLWIACHRWSRKKWNTFLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU59</accession>
    <name>A0A0M2UU59_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CDP-diglyceride synthetase</fullName>
            <ecNumber evidence="2">2.7.7.41</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">cds</name>
        <name evidence="2" type="ORF">BROFUL_03297</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.41" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000301">
        <property type="protein sequence ID" value="KKO18019.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18019">
        <property type="protein sequence ID" value="KKO18019"/>
        <property type="gene ID" value="BROFUL_03297"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4065"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004605">
        <property type="term" value="F:phosphatidate cytidylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="61"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="90"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="120"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="146"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="188"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="215"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="250"/>
            <end position="275"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18019.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="283" mass="30909" checksum="F9FE03A3D901B56F" modified="2015-11-11" version="1">MSTLQTRITFGVILFALFFGILWLDSLFDTDLGFMSLAIVAGGIGLYEFYHIAGKNGFSPFRISGIAAGVALLVFSWLSLRKDIAVDCRFFREEAMVILVFWLLLIQAVTRGTQDAIKNIAVTIFGIFYVAFLLSFALALRTFPHGLAIVVLVLLVSKFGDIGGYLLGRKYGKHKLAKVISPNKTVEGACFSLASSILISVTFNLIPSIRVMSVPWAIIFGAVVGFSAMLGDLAESLLKRDAQVKDSGRLVPAFGGVLDVIDCLLVSMPVAYYLFVWGKLIEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU81</accession>
    <name>A0A0M2UU81_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">30S ribosomal protein S19</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpsS</name>
        <name evidence="7" type="ORF">BROFUL_01919</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the universal ribosomal protein uS19 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000196">
        <property type="protein sequence ID" value="KKO19392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19392">
        <property type="protein sequence ID" value="KKO19392"/>
        <property type="gene ID" value="BROFUL_01919"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2388"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.860.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00531">
        <property type="entry name" value="Ribosomal_S19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020934">
        <property type="entry name" value="Ribosomal_S15/S19_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002222">
        <property type="entry name" value="Ribosomal_S19"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005732">
        <property type="entry name" value="Ribosomal_S19_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023575">
        <property type="entry name" value="Ribosomal_S19_S15_SF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11880">
        <property type="entry name" value="PTHR11880"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00203">
        <property type="entry name" value="Ribosomal_S19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002144">
        <property type="entry name" value="Ribosomal_S19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00975">
        <property type="entry name" value="RIBOSOMALS19"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54570">
        <property type="entry name" value="SSF54570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01050">
        <property type="entry name" value="rpsS_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00323">
        <property type="entry name" value="RIBOSOMAL_S19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00015696"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="94" mass="10644" checksum="CAA2E38ABA431194" modified="2015-11-11" version="1">MSRSVKKGPYLDSKLMKKVLKQKESGGNEPIKTWSRSCTIAPEFVSHTFMIHNGKIFQKLFVTDDMVGHKLGEFAQTRIFRAHGGVKKKETPHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUF6</accession>
    <name>A0A0M2UUF6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Serine O-acetyltransferase</fullName>
            <ecNumber evidence="3">2.3.1.30</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_01620</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>acetyl-CoA + L-serine = CoA + O-acetyl-L-serine</text>
            <dbReference type="Rhea" id="RHEA:24560"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:58340"/>
            <dbReference type="EC" id="2.3.1.30"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the transferase hexapeptide repeat family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.30" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19688">
        <property type="protein sequence ID" value="KKO19688"/>
        <property type="gene ID" value="BROFUL_01620"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1999"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009001">
        <property type="term" value="F:serine O-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006535">
        <property type="term" value="P:cysteine biosynthetic process from serine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03354">
        <property type="entry name" value="LbH_SAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018357">
        <property type="entry name" value="Hexapep_transf_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045304">
        <property type="entry name" value="LbH_SAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042122">
        <property type="entry name" value="Ser_AcTrfase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005881">
        <property type="entry name" value="Ser_O-AcTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00132">
        <property type="entry name" value="Hexapep"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01172">
        <property type="entry name" value="cysE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00101">
        <property type="entry name" value="HEXAPEP_TRANSFERASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="4 8" id="KW-0808">Transferase</keyword>
    <feature type="coiled-coil region" evidence="7">
        <location>
            <begin position="193"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="245" mass="26928" checksum="EFCCE2F4AB5365CC" modified="2015-11-11" version="1">MFDRLREDINVAFQNDPAARSKFEVLLCYPGIHALWLHRIAHYLWRREWITVSRFISHINRFLTGIEIHPAAQIGRGVFIDHGMGVVIGETAVIGDGCLLYKGVVLGGTTTEKTKRHPNLGKKVIVGSNACILGNITIGDCARIGSGSVITKDVPPHATVVGVPGRIIKQRKKGEQEALLDHGQLPDPIAEAIMTVLKENGKLKQRIKKLENTLNLSSDADDAASETESEIMSIFMKNYKDGDGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUH5</accession>
    <name>A0A0M2UUH5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="12 13">DNA primase</fullName>
            <ecNumber evidence="12">2.7.7.101</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="primary">dnaG</name>
        <name evidence="17" type="ORF">BROFUL_03173</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12 13">RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="12 13 14">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="12 13 14">Binds 1 zinc ion per monomer.</text>
    </comment>
    <comment type="subunit">
        <text evidence="12">Monomer. Interacts with DnaB.</text>
    </comment>
    <comment type="domain">
        <text evidence="12">Contains an N-terminal zinc-binding domain, a central core domain that contains the primase activity, and a C-terminal DnaB-binding domain.</text>
    </comment>
    <comment type="similarity">
        <text evidence="12 13">Belongs to the DnaG primase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.101" evidence="12"/>
    <dbReference type="EMBL" id="LAQJ01000292">
        <property type="protein sequence ID" value="KKO18124.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18124">
        <property type="protein sequence ID" value="KKO18124"/>
        <property type="gene ID" value="BROFUL_03173"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3914"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990077">
        <property type="term" value="C:primosome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003896">
        <property type="term" value="F:DNA primase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03364">
        <property type="entry name" value="TOPRIM_DnaG_primases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.860.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.980.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00974">
        <property type="entry name" value="DNA_primase_DnaG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016136">
        <property type="entry name" value="DNA_helicase_N/primase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013264">
        <property type="entry name" value="DNA_primase_core_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037068">
        <property type="entry name" value="DNA_primase_core_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019475">
        <property type="entry name" value="DNA_primase_DnaB-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006295">
        <property type="entry name" value="DNA_primase_DnaG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036977">
        <property type="entry name" value="DNA_primase_Znf_CHC2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030846">
        <property type="entry name" value="DnaG_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034151">
        <property type="entry name" value="TOPRIM_DnaG_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006171">
        <property type="entry name" value="TOPRIM_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002694">
        <property type="entry name" value="Znf_CHC2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10410">
        <property type="entry name" value="DnaB_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08275">
        <property type="entry name" value="Toprim_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01807">
        <property type="entry name" value="zf-CHC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002811">
        <property type="entry name" value="DnaG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00493">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00400">
        <property type="entry name" value="ZnF_CHCC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01391">
        <property type="entry name" value="dnaG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 12 13" id="KW-0235">DNA replication</keyword>
    <keyword evidence="10 12" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1 12 13" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 12 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 12 13" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2 12 13" id="KW-0639">Primosome</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11 12 13" id="KW-0804">Transcription</keyword>
    <keyword evidence="3 12 13" id="KW-0808">Transferase</keyword>
    <keyword evidence="8 12 13" id="KW-0862">Zinc</keyword>
    <keyword evidence="7 12 14" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="ZnF_CHCC" evidence="15">
        <location>
            <begin position="36"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="domain" description="Toprim" evidence="16">
        <location>
            <begin position="261"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="CHC2-type" evidence="12 14">
        <location>
            <begin position="40"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRNR" id="PIRNR002811"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRSR" id="PIRSR002811-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="SMART" id="SM00400"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="SMART" id="SM00493"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="KKO18124.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="598" mass="68568" checksum="E3B272E7D78AE9F1" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUL0</accession>
    <name>A0A0M2UUL0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Antitoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01562</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Antitoxin component of a type II toxin-antitoxin (TA) system.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the phD/YefM antitoxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000163">
        <property type="protein sequence ID" value="KKO19728.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19728">
        <property type="protein sequence ID" value="KKO19728"/>
        <property type="gene ID" value="BROFUL_01562"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006442">
        <property type="entry name" value="Antitoxin_Phd/YefM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036165">
        <property type="entry name" value="YefM-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02604">
        <property type="entry name" value="PhdYeFM_antitox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143120">
        <property type="entry name" value="SSF143120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009981"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19728.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="89" mass="9998" checksum="838AB75B7983A0E6" modified="2015-11-11" version="1">MITVGIKELKNRLSHYLREIKKGEKIAITEREKIIATITPVERVGEDSKLLSLVKEGFAVWKGGKPMGSIHSVKVKGKTVSEIVIEDRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUN6</accession>
    <name>A0A0M2UUN6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01529</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000158">
        <property type="protein sequence ID" value="KKO19753.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19753">
        <property type="protein sequence ID" value="KKO19753"/>
        <property type="gene ID" value="BROFUL_01529"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="442"/>
            <end position="478"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="11"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="443"/>
            <end position="463"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="464"/>
            <end position="478"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19753.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="877" mass="99749" checksum="F4874D28BE475A79" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUQ0</accession>
    <name>A0A0M2UUQ0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01743</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000181">
        <property type="protein sequence ID" value="KKO19542.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19542">
        <property type="protein sequence ID" value="KKO19542"/>
        <property type="gene ID" value="BROFUL_01743"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="28"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19542.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="92" mass="10036" checksum="0F4B91BF8C0ADEF9" modified="2015-11-11" version="1">MTDTQQNNIPPGTGWQPVYIKKSRGAGFWVAVGLASFFFLCTLLFFILFVGSLVLNKALVTSTSLSARKHVEETVIEGSGESKVAIIPLRAY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUT1</accession>
    <name>A0A0M2UUT1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03054</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000284">
        <property type="protein sequence ID" value="KKO18244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18244">
        <property type="protein sequence ID" value="KKO18244"/>
        <property type="gene ID" value="BROFUL_03054"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644023" evidence="2">
        <location>
            <begin position="19"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="25"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="170" mass="18997" checksum="6BA3FA10C28998DD" modified="2015-11-11" version="1">MGLVALIVPLFLVNTVNAQDVSNKLNMMEIVISNLIARVEALEKRVNALEKNLAPGVGKAAKKEVAGKEPARPILTDGFEDIGNGFFVRGVRFNPFGDNVLFMGEIANRSEKNYRFAKFKLEIYDDRDLLVKKEEFTIPDSPKDSIKPFETMIIGVDAGLIHRYVLRADD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUT7</accession>
    <name>A0A0M2UUT7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">GEVED domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01684</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000176">
        <property type="protein sequence ID" value="KKO19577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19577">
        <property type="protein sequence ID" value="KKO19577"/>
        <property type="gene ID" value="BROFUL_01684"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045474">
        <property type="entry name" value="GEVED"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20009">
        <property type="entry name" value="GEVED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644092" description="GEVED domain-containing protein" evidence="1">
        <location>
            <begin position="26"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="domain" description="GEVED" evidence="2">
        <location>
            <begin position="99"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20009"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="185" mass="21033" checksum="76DC19B2945D3E06" modified="2015-11-11" version="1">MARKKRVFFTSVGALLFLSSLLASAVKGETMPDFGSAPSPYPSAATFNQQYEYLGEDSTANDGVLFRKKPGDWDVGRKVNVVWHLTTTDKKIFYPHGVYFRLYIDWNHDGDWDDAGEMVVDSFKDKVRGNRVRKFKESFVVPEHTREGPFWARAWVSYGFPSPVNGDFSTSFGEIEDYNLFDEGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUW3</accession>
    <name>A0A0M2UUW3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01435</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000147">
        <property type="protein sequence ID" value="KKO19833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19833">
        <property type="protein sequence ID" value="KKO19833"/>
        <property type="gene ID" value="BROFUL_01435"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2310.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007712">
        <property type="entry name" value="RelE/ParE_toxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035093">
        <property type="entry name" value="RelE/ParE_toxin_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05016">
        <property type="entry name" value="ParE_toxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-1277">Toxin-antitoxin system</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="92" mass="10491" checksum="674F685AE8C607A4" modified="2015-11-11" version="1">MDLEIEWSPTARLDFRDIILFIAENNLPAANQFRNKILHHIKQLPKFPASGSVVPEFRDAVVERRASSLYIKCMGIPIFLLLPYTPPTPSVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUZ9</accession>
    <name>A0A0M2UUZ9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Response regulatory protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">nifA</name>
        <name evidence="2" type="ORF">BROFUL_01829</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000190">
        <property type="protein sequence ID" value="KKO19450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19450">
        <property type="protein sequence ID" value="KKO19450"/>
        <property type="gene ID" value="BROFUL_01829"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037522">
        <property type="entry name" value="HD_GYP_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13185">
        <property type="entry name" value="GAF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00065">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51832">
        <property type="entry name" value="HD_GYP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HD-GYP" evidence="1">
        <location>
            <begin position="357"/>
            <end position="554"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="565" mass="64474" checksum="81AB46746915A07B" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV06</accession>
    <name>A0A0M2UV06_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Secretory pathway protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01667</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19632">
        <property type="protein sequence ID" value="KKO19632"/>
        <property type="gene ID" value="BROFUL_01667"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012902">
        <property type="entry name" value="N_methyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045584">
        <property type="entry name" value="Pilin-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07963">
        <property type="entry name" value="N_methyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54523">
        <property type="entry name" value="SSF54523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02532">
        <property type="entry name" value="IV_pilin_GFxxxE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00409">
        <property type="entry name" value="PROKAR_NTER_METHYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="225" mass="25499" checksum="C36F8B8FDDACE9CB" modified="2015-11-11" version="1">MQKVTPLHQDRGFTLIELIVVLAIIGIVAGVTIPRYAGSFDSIRFRQSMSDLVSFLRDARIKAMGTAGVYHVTLDLHRGFCWNDDKKILILPKNIEIFTDKIEAQNEHTKIFAFFPNGMALDVKLGFLCDTMVAVLRVEPLGGLAYYRMDETMEQVVRYTRDETELKVGELEKDIDILKDSDKLTSYGQADEIPMGNDFDSEFEDYEYGDNEVGSFGEDDGKETE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV48</accession>
    <name>A0A0M2UV48_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RAMP superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02412</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000231">
        <property type="protein sequence ID" value="KKO18866.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18866">
        <property type="protein sequence ID" value="KKO18866"/>
        <property type="gene ID" value="BROFUL_02412"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2999"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013410">
        <property type="entry name" value="CRISPR-assoc_RAMP_Cmr4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005537">
        <property type="entry name" value="RAMP_III_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36700">
        <property type="entry name" value="PTHR36700"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03787">
        <property type="entry name" value="RAMPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02580">
        <property type="entry name" value="cas_RAMP_Cmr4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18866.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="294" mass="32373" checksum="54A0B48ADFCD8AEB" modified="2015-11-11" version="1">MSDNGSLFTFYALTPLHAGAGDSAGAIDLTVQREKHTEYPVVFSSAMKGSLRCFFEWDGPSETDINAIFGTEGNDQRDSASGKVVFTDAKILLFPVRSSEGVFKWITCPFVIERLKRDLQFIGISRNEAAADNIAFRSPAYASRVILEDFPVAVADGSASSSALFAFLKSLTVPHFFPEDIFRQRLIIVADDIFKTLVTTATQVIARNVLDNDTKKSKNLWYEEVVPADAVFYTIMKPAYRGSDDVMLKLCAKIAGRILQIGGNETIGYGFVKMSHNIAQTPNPVGPEKIKSFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV52</accession>
    <name>A0A0M2UV52_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02417</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000231">
        <property type="protein sequence ID" value="KKO18871.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18871">
        <property type="protein sequence ID" value="KKO18871"/>
        <property type="gene ID" value="BROFUL_02417"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007522">
        <property type="entry name" value="CRISPR-assoc_prot_TM1795"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005537">
        <property type="entry name" value="RAMP_III_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03787">
        <property type="entry name" value="RAMPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01894">
        <property type="entry name" value="cas_TM1795_cmr1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18871.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="260" mass="30378" checksum="3E4C233842DC7246" modified="2015-11-11" version="1">MYKANFKLEVITPLMMSNGEIADGKKFSETRKNKQGKTTINWQEKLKTAELRVPSLKGVLRWWFRAIFGGDNLELLKRSEDEIFGSTDVASKIKIRIENPKIEIKEWRNTCWANYQCSKVEGKNYPLNGYQYLAYINYVKTTREGKIDIRKFITHGSTFDLIMTSVDKQAFENALISFWFALHFGGFGNRARRGFGKLQSNQVDILPKPFHDDVLKHFDFCPAKDLNSHKELVDQGLMGWKQYRQRKVYQAFPAQNTQIW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVE1</accession>
    <name>A0A0M2UVE1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02349</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18956.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18956">
        <property type="protein sequence ID" value="KKO18956"/>
        <property type="gene ID" value="BROFUL_02349"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030489">
        <property type="entry name" value="TR_Rrf2-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000944">
        <property type="entry name" value="Tscrpt_reg_Rrf2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33221">
        <property type="entry name" value="PTHR33221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02082">
        <property type="entry name" value="Rrf2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00738">
        <property type="entry name" value="rrf2_super"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01332">
        <property type="entry name" value="HTH_RRF2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51197">
        <property type="entry name" value="HTH_RRF2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18956.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="152" mass="17037" checksum="C1E95C53A85D606F" modified="2015-11-11" version="1">MKLSKKSDYALRAMIYLSMNYRKGAIQIKEISTNERIPQKFLENILLILRKVGILNSKIGLKGGYELARSPDLITLGEVIRALDGAIAPLDCVSKMSYKPCSEEVTCVIRGVMIDIRNAITDVLDRMTFADMCNRVKESIESKESGVLTYTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVM8</accession>
    <name>A0A0M2UVM8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PPC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02227</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19046">
        <property type="protein sequence ID" value="KKO19046"/>
        <property type="gene ID" value="BROFUL_02227"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd11378">
        <property type="entry name" value="DUF296"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005175">
        <property type="entry name" value="PPC_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03479">
        <property type="entry name" value="PCC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51742">
        <property type="entry name" value="PPC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PPC" evidence="1">
        <location>
            <begin position="6"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19046.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="144" mass="15752" checksum="F5C6DE70B9425504" modified="2015-11-11" version="1">MKYQVGAVGRVVVARFEDKEDVLGNLGTIAKKEGISAAAFYLLGGMREGKIVVGPEKDELPPAPVWRTLGESHEIVGFGTIFYQNNEPKVHFHAAFGKKDTVKVGCLRENSQTFLVLEAVIIELNGINALREFDPVSGLNILKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVR4</accession>
    <name>A0A0M2UVR4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Chemotaxis protein CheY</fullName>
            <ecNumber evidence="3">2.7.3.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">cheY_1</name>
        <name evidence="3" type="ORF">BROFUL_02211</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.3.-" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000221">
        <property type="protein sequence ID" value="KKO19076.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19076">
        <property type="protein sequence ID" value="KKO19076"/>
        <property type="gene ID" value="BROFUL_02211"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2762"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="3"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19076.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="125" mass="13721" checksum="84B1846FDDA6AB3C" modified="2015-11-11" version="1">MPKVLIIDDSAVMRKIIQRNIQQSGLLVDEFVEAGDGREGLEKAASNSIDLILCDWNMPNMTGIDFVKALRGSAQKNNIPIVMVTTEGGETKIEEAKRSGANGYLTKPFTPEQLKSKLGNFLLVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVR9</accession>
    <name>A0A0M2UVR9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01107</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20148.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20148">
        <property type="protein sequence ID" value="KKO20148"/>
        <property type="gene ID" value="BROFUL_01107"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20148.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="81" mass="9368" checksum="ACD5D38BCDA6E063" modified="2015-11-11" version="1">MSQQIKYKDEIIKELQDVLDEDIPELLEVIKNLKAGKKKGKKRAIAKKEKAPLWDLKNIAIETGIEDLAEHHDHYLYGVTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVS9</accession>
    <name>A0A0M2UVS9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02700</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the phD/YefM antitoxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000250">
        <property type="protein sequence ID" value="KKO18599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18599">
        <property type="protein sequence ID" value="KKO18599"/>
        <property type="gene ID" value="BROFUL_02700"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036165">
        <property type="entry name" value="YefM-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143120">
        <property type="entry name" value="SSF143120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="47"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="47"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009981"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="73" mass="8623" checksum="A04EDD6209300864" modified="2015-11-11" version="1">MATTMKQENKSIKVKQYIIDDNGRKVAAIIEMEELNRLEELLEDLSDIKSIEDRKNEPDEDYETYSTKRKSQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW24</accession>
    <name>A0A0M2UW24_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">UDP-N-acetylglucosamine 2-epimerase</fullName>
            <ecNumber evidence="3">5.1.3.14</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">wecB</name>
        <name evidence="3" type="ORF">BROFUL_01501</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UDP-N-acetylglucosamine 2-epimerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.1.3.14" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000155">
        <property type="protein sequence ID" value="KKO19775.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19775">
        <property type="protein sequence ID" value="KKO19775"/>
        <property type="gene ID" value="BROFUL_01501"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1856"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008761">
        <property type="term" value="F:UDP-N-acetylglucosamine 2-epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003331">
        <property type="entry name" value="UDP_GlcNAc_Epimerase_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029767">
        <property type="entry name" value="WecB-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43174">
        <property type="entry name" value="PTHR43174"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02350">
        <property type="entry name" value="Epimerase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00236">
        <property type="entry name" value="wecB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Epimerase_2" evidence="2">
        <location>
            <begin position="29"/>
            <end position="363"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19775.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="382" mass="42761" checksum="59D4377EE31F0CBF" modified="2015-11-11" version="1">MPKIMSVIGTRPEAIKLAPVIKELGRHSGALKSIVTVTAQHRQMLDSVLKVFAIQPDYDLNLMADNQGLADITSKVLKNIEPVYEKEQPDLVLIQGDTTTAFAAALAAYYRHIPVGHVEAGLRSRNKYHPFPEEINRCLTSVIAHLHFAPTKEAKNNLLNEGVDEGLICVTGNTVIDALLNIARHDFTFDNDSLNTIKGKMVLITAHRRESFGQPFMNICNAIMTLAKKYPNVTFVYPVHPNPNVRNLVYSMLEHTANIFLIEPLEYGPFVHLMKRACIILTDSGGIQEEAPSLQKPVLILREVTERPEAVMAGCAKLVGTRPETIIQETIRLLEDRKEYHRMAHAVNPFGDGYAAKRIINFIRNKFIHNQDTLEVLECITG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW32</accession>
    <name>A0A0M2UW32_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Phosphoesterase</fullName>
            <ecNumber evidence="2">3.1.4.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02588</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the metallophosphoesterase superfamily. YfcE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.4.-" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000239">
        <property type="protein sequence ID" value="KKO18709.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18709">
        <property type="protein sequence ID" value="KKO18709"/>
        <property type="gene ID" value="BROFUL_02588"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0110165">
        <property type="term" value="C:cellular anatomical entity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024654">
        <property type="entry name" value="Calcineurin-like_PHP_lpxH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020935">
        <property type="entry name" value="PdiEstase_YfcE_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011152">
        <property type="entry name" value="Pesterase_MJ0912"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000979">
        <property type="entry name" value="Phosphodiesterase_MJ0936/Vps29"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12850">
        <property type="entry name" value="Metallophos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000883">
        <property type="entry name" value="Pesterase_MJ0912"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00040">
        <property type="entry name" value="yfcE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01269">
        <property type="entry name" value="UPF0025"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metallophos_2" evidence="3">
        <location>
            <begin position="1"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008950"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF12850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18709.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="231" mass="25358" checksum="DA468CB12F3373BB" modified="2015-11-11" version="1">MKILVISDVHGNLAALDAVSERADMVFCLGDIVNYGHYPRLCMERIRGLTNTVVRGNHDNAIGRNAECGCSVKYQELSNAGKVFSRAVLNAEEKEYLGNLPVSALLESDGKKFLLSHGSPGGDLYKYLRPDVSDEQWDSELTDVSADVVFLGHTHLPMVRMIRGVTVVNPGSVGQPRDGIPMASYAVWEDGHAEIKRVHYDIEATIKGLHETSIPLRQVAMLAKILREGGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW46</accession>
    <name>A0A0M2UW46_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">3-phosphoshikimate 1-carboxyvinyltransferase</fullName>
            <ecNumber evidence="7">2.5.1.19</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">5-enolpyruvylshikimate-3-phosphate synthase</fullName>
            <shortName evidence="7">EPSP synthase</shortName>
            <shortName evidence="7">EPSPS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">aroA</name>
        <name evidence="9" type="ORF">BROFUL_00997</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>3-phosphoshikimate + phosphoenolpyruvate = 5-O-(1-carboxyvinyl)-3-phosphoshikimate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:21256"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57701"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:145989"/>
            <dbReference type="EC" id="2.5.1.19"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 6/7.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the EPSP synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.19" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000118">
        <property type="protein sequence ID" value="KKO20288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20288">
        <property type="protein sequence ID" value="KKO20288"/>
        <property type="gene ID" value="BROFUL_00997"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1248"/>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00089"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003866">
        <property type="term" value="F:3-phosphoshikimate 1-carboxyvinyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:cellular amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd01556">
        <property type="entry name" value="EPSP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.65.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00210">
        <property type="entry name" value="EPSP_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001986">
        <property type="entry name" value="Enolpyruvate_Tfrase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036968">
        <property type="entry name" value="Enolpyruvate_Tfrase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006264">
        <property type="entry name" value="EPSP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023193">
        <property type="entry name" value="EPSP_synthase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013792">
        <property type="entry name" value="RNA3'P_cycl/enolpyr_Trfase_a/b"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00275">
        <property type="entry name" value="EPSP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000505">
        <property type="entry name" value="EPSPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55205">
        <property type="entry name" value="SSF55205"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01356">
        <property type="entry name" value="aroA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00104">
        <property type="entry name" value="EPSP_SYNTHASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00885">
        <property type="entry name" value="EPSP_SYNTHASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="6 7" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="EPSP_synthase" evidence="8">
        <location>
            <begin position="9"/>
            <end position="417"/>
        </location>
    </feature>
    <feature type="region of interest" description="Shikimate-3-phosphate binding" evidence="7">
        <location>
            <begin position="21"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphoenolpyruvate" evidence="7">
        <location>
            <begin position="92"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="region of interest" description="Shikimate-3-phosphate binding" evidence="7">
        <location>
            <begin position="168"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="7">
        <location>
            <position position="311"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="7">
        <location>
            <position position="339"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="26"/>
        </location>
        <ligand>
            <name>3-phosphoshikimate</name>
            <dbReference type="ChEBI" id="CHEBI:145989"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="122"/>
        </location>
        <ligand>
            <name>phosphoenolpyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="196"/>
        </location>
        <ligand>
            <name>3-phosphoshikimate</name>
            <dbReference type="ChEBI" id="CHEBI:145989"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="334"/>
        </location>
        <ligand>
            <name>3-phosphoshikimate</name>
            <dbReference type="ChEBI" id="CHEBI:145989"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="338"/>
        </location>
        <ligand>
            <name>3-phosphoshikimate</name>
            <dbReference type="ChEBI" id="CHEBI:145989"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="342"/>
        </location>
        <ligand>
            <name>phosphoenolpyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="383"/>
        </location>
        <ligand>
            <name>phosphoenolpyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="408"/>
        </location>
        <ligand>
            <name>phosphoenolpyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004811"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009948"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="419" mass="45192" checksum="547D5456EA107B54" modified="2015-11-11" version="1">MIEIKPITGSIDAIVKVPGSKSYTNRALITAALADGTSTITNALFSDDTKYMASGLNILGIPVEEQHDVNTFIVHGKGGAIPARQANLFVGNAGTAMRFLTAMLTLGNGVYEIDGVTRMRQRPIQDLLDGLSQLGADVTSKNNDGCPPVMIRGKGLQGGLTVVKGDLSSQYFSALLMTSPYAKRDVIIEVKGNLVSKRYVDMTIALMRQFGINIENSDYKTFFVKSGQHYRATHYEVEGDASGASYFFAAAAITGGKVRVVGIGSDSMQGDIHFVDVLKSMGCSVTWGGNWIEVQGGALRGIDIDMGDMSDVVQTLAAVAVFAQGKTRVRNVKNMRIKETDRIAAVVNELRRMGISAVEYEDGFEIEPSPPCPAEIETYDDHRMAMSFALVGLRSSGIAIKNPGCVAKTFPDYFQRLEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWF1</accession>
    <name>A0A0M2UWF1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Hemerythrin domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02495</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18834">
        <property type="protein sequence ID" value="KKO18834"/>
        <property type="gene ID" value="BROFUL_02495"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012312">
        <property type="entry name" value="Hemerythrin-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01814">
        <property type="entry name" value="Hemerythrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hemerythrin" evidence="1">
        <location>
            <begin position="53"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="223" mass="25978" checksum="6805543E1187A589" modified="2015-11-11" version="1">MKRFFAILVVISCAGITACAPPKHRIYQEHAHLENTNPSVTDILHNDLDAVKRMLRLLGKAAYCLDHEKPVSKENFQDMVKIISEFSDKHHQEKEDKVLFPALKVKNEGEKKDFLGRLLMEHVSARDEMRNLTTALNYFDQGKKAKKKIAKIAHSYIKNMDKHIDMEEKLLFPWINKVLTPDEQALFIKKFEALEKEDLESGVHEKYSSMIERLEQELWLCSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWH8</accession>
    <name>A0A0M2UWH8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02410</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000231">
        <property type="protein sequence ID" value="KKO18864.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18864">
        <property type="protein sequence ID" value="KKO18864"/>
        <property type="gene ID" value="BROFUL_02410"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010172">
        <property type="entry name" value="CRISPR-assoc_prot_TM1791"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005537">
        <property type="entry name" value="RAMP_III_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39965">
        <property type="entry name" value="PTHR39965"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03787">
        <property type="entry name" value="RAMPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01898">
        <property type="entry name" value="cas_TM1791_cmr6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18864.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="253" mass="28740" checksum="92A984B07CBDFE62" modified="2015-11-11" version="1">MKLPLPKDIRGNTDNLSTPNLSLKYYKWADIYNDNKFQEVDSKRKGKFFESFITLSKSKAYREAFENRKRLMEGIGITFTMTTVSRLVFGMGYEHPTEIGFAFDWTSGLPVIPGSSLKGIARYAAETDNHDDIAGIFGAENGDAQAGEIVFFPAYPCLIDNNKPFLELDVMTPHYSKYYSDPVNNPPADWYSPLPLHFLTVPAGEKYCFRLAHRKNLRDKESPLLKKTENILKYALSEFGVGAKTSVFYGYFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWJ3</accession>
    <name>A0A0M2UWJ3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">N-acyl-D-amino-acid deacylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01052</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20202">
        <property type="protein sequence ID" value="KKO20202"/>
        <property type="gene ID" value="BROFUL_01052"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1314"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016811">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013108">
        <property type="entry name" value="Amidohydro_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023100">
        <property type="entry name" value="D-aminoacylase_insert_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07969">
        <property type="entry name" value="Amidohydro_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51338">
        <property type="entry name" value="SSF51338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro_3" evidence="1">
        <location>
            <begin position="47"/>
            <end position="509"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07969"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="528" mass="59459" checksum="5AAE43426EC56265" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWT2</accession>
    <name>A0A0M2UWT2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00971</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000117">
        <property type="protein sequence ID" value="KKO20297.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20297">
        <property type="protein sequence ID" value="KKO20297"/>
        <property type="gene ID" value="BROFUL_00971"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012347">
        <property type="entry name" value="Ferritin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003251">
        <property type="entry name" value="Rubrerythrin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02915">
        <property type="entry name" value="Rubrerythrin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rubrerythrin" evidence="1">
        <location>
            <begin position="4"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="domain" description="Rubrerythrin" evidence="1">
        <location>
            <begin position="86"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20297.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="150" mass="17806" checksum="B56754E1996B7599" modified="2015-11-11" version="1">MATLDVKEIIQQAAQQEEKAYKFYMDALKFVKDPASQVWLKELAAEEVKHKELLQKFDVSKVKKFKPEKIHDLHITEYLVDKDISDVKTFQDVLIVAMKKEQKSYNFYVGMAKSTDNPDMKNLCKILAQEELKHKHKLELYYDDNIYQWD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWV9</accession>
    <name>A0A0M2UWV9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01835</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000190">
        <property type="protein sequence ID" value="KKO19456.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19456">
        <property type="protein sequence ID" value="KKO19456"/>
        <property type="gene ID" value="BROFUL_01835"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19456.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="172" mass="19655" checksum="102553B8D49A20EB" modified="2015-11-11" version="1">MVKAPEKFLDEYLSRKKVLGGKAGAKSSVMPVRKVSAEELARLKINIQTLWGVYGTPEIREILAKEQEIRFLEIESEKASLSLMYREKGIFMEYEVNLGYRKELAGAQMYKQADMNLNRYFTHATGTDDLLRSANEALYILADVFIDKEIPETDIWNAIANGEQVRFSFMSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWW2</accession>
    <name>A0A0M2UWW2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RNA-metabolising metallo-beta-lactamase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01223</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000133">
        <property type="protein sequence ID" value="KKO20060.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20060">
        <property type="protein sequence ID" value="KKO20060"/>
        <property type="gene ID" value="BROFUL_01223"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1515"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022712">
        <property type="entry name" value="Beta_Casp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011108">
        <property type="entry name" value="RMMBL"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10996">
        <property type="entry name" value="Beta-Casp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07521">
        <property type="entry name" value="RMMBL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01027">
        <property type="entry name" value="Beta-Casp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="13"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="domain" description="Beta-Casp" evidence="2">
        <location>
            <begin position="253"/>
            <end position="378"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM01027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20060.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="463" mass="50934" checksum="368C54A7E336E673" modified="2015-11-11" version="1">MKIYFHGATGDVTGSAYHVKTKHASVLVDCGLFQGGKEERAKNRRRANLESGKLDAVVLTHAHLDHIGRLPLLTQKEYQGPIYATQATLDVARLILRDSYFLQKADLDRENRKRARSGQAPLEPLFTEEDVLRLKPLIRAIAYNQPVQVAPGVQARLVDAGHVIGSASVELTVEEDGKKKVVVFSGDLGPRGAPLLNDPVPFERADAVIMESTYGDRNHRSLYETAMEARKIIAKAIEAKAKILVPVFAVGRTQLLLYLLAGAFRKKTLPRFPIYLDSPLAIEATKIYGKHNELFDEEAQSMVKSGDLRESLQGAKFCPTAEDSRALNNVKGPCMIMAGSGMCTGGRIMHHLKHNLHHPDTAVLIVGFQSPGTLGRQLVDGKESVSIFGEEVAVRASIHTMGGFSAHAGQDDLLKWFSAVAPSRPRVIITHGEDRARKTFSDLIRSQHNLRPEIPNLGDMIEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX06</accession>
    <name>A0A0M2UX06_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01783</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000186">
        <property type="protein sequence ID" value="KKO19506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19506">
        <property type="protein sequence ID" value="KKO19506"/>
        <property type="gene ID" value="BROFUL_01783"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2209"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="118" mass="12997" checksum="8209EFEAAF3C8ACC" modified="2015-11-11" version="1">MVLVDTSIWVVHLRNGDIGLETLLNEGSAVCHPFIVGELACGNLKNRAEILSLLQTLPMAIPGEHEEVMRFIEDHALMRKGLGYIDIHLIVSAVITGIPLWTVDKKLDEIALKLGIGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX53</accession>
    <name>A0A0M2UX53_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">3'(2'),5'-bisphosphate nucleotidase CysQ</fullName>
            <ecNumber evidence="3">3.1.3.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">3'(2'),5-bisphosphonucleoside 3'(2')-phosphohydrolase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">3'-phosphoadenosine 5'-phosphate phosphatase</fullName>
            <shortName evidence="3">PAP phosphatase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3 4" type="primary">cysQ</name>
        <name evidence="4" type="ORF">BROFUL_02250</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Converts adenosine-3',5'-bisphosphate (PAP) to AMP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>adenosine 3',5'-bisphosphate + H2O = AMP + phosphate</text>
            <dbReference type="Rhea" id="RHEA:10040"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58343"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="3.1.3.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell membrane</location>
            <topology evidence="3">Peripheral membrane protein</topology>
            <orientation evidence="3">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the inositol monophosphatase superfamily. CysQ family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.7" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000222">
        <property type="protein sequence ID" value="KKO19069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19069">
        <property type="protein sequence ID" value="KKO19069"/>
        <property type="gene ID" value="BROFUL_02250"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2808"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008441">
        <property type="term" value="F:3'(2'),5'-bisphosphate nucleotidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046855">
        <property type="term" value="P:inositol phosphate dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006790">
        <property type="term" value="P:sulfur compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02095">
        <property type="entry name" value="CysQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006240">
        <property type="entry name" value="CysQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020583">
        <property type="entry name" value="Inositol_monoP_metal-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000760">
        <property type="entry name" value="Inositol_monophosphatase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00459">
        <property type="entry name" value="Inositol_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00377">
        <property type="entry name" value="IMPHPHTASES"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00629">
        <property type="entry name" value="IMP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="1 3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="3">
        <location>
            <begin position="103"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="103"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02095"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="281" mass="31426" checksum="7252764294EF540B" modified="2015-11-11" version="1">MNHEQYIQPLLTALHAAKRAGEAILEVYNSDFAVEHKDDHSPLTLADKRSHEIILNGLQQTRSTNNKEPPLNNPLLPILSEEGKDIPYNERKRWEYLWLVDPLDGTKEFIKRNGEFTVNIALIRKDKPVLGCIYIPVQDCFYFAAVNIGAYMLVNSKIVSDDLTIKKLLDASQGLPLSANTRKSALPKNQDIMEKHRALTIVGSRSHATQELSEFVDKIKETSGEVAFISAGSSLKFCLVAEGKADIYPRFGPTMEWDTAAGQAIVEQAQGGFSIYLPKDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXF3</accession>
    <name>A0A0M2UXF3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_01676</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19641.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19641">
        <property type="protein sequence ID" value="KKO19641"/>
        <property type="gene ID" value="BROFUL_01676"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="206"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="8">
        <location>
            <begin position="226"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="7">
        <location>
            <begin position="323"/>
            <end position="534"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO19641.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="535" mass="60227" checksum="84CC37582D6BBB0A" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXH7</accession>
    <name>A0A0M2UXH7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">30S ribosomal protein S6</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpsF</name>
        <name evidence="6" type="ORF">BROFUL_00690</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Binds together with S18 to 16S ribosomal RNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the bacterial ribosomal protein bS6 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20572">
        <property type="protein sequence ID" value="KKO20572"/>
        <property type="gene ID" value="BROFUL_00690"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00473">
        <property type="entry name" value="bS6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00360">
        <property type="entry name" value="Ribosomal_S6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000529">
        <property type="entry name" value="Ribosomal_S6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020814">
        <property type="entry name" value="Ribosomal_S6_plastid/chlpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035980">
        <property type="entry name" value="Ribosomal_S6_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014717">
        <property type="entry name" value="Transl_elong_EF1B/ribosomal_S6"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21011">
        <property type="entry name" value="PTHR21011"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01250">
        <property type="entry name" value="Ribosomal_S6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54995">
        <property type="entry name" value="SSF54995"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00166">
        <property type="entry name" value="S6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00360"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="138" mass="15514" checksum="AA7ABA2F5D4536F1" modified="2015-11-11" version="1">MRMYEGLFLLDNAHASMEWDNVVKHIHDILQKNGAEILKTEKWGEKKLAYKIKGHKRGTYLLIHFHAKNSAITTIKRDLQLSDYVIRSLIVKDDKIEELSQAVPAEGTAEKTVGAVPATAEKDLVKESDVSLKTADTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXH9</accession>
    <name>A0A0M2UXH9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Cobalt transporter protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_02115</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000212">
        <property type="protein sequence ID" value="KKO19174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19174">
        <property type="protein sequence ID" value="KKO19174"/>
        <property type="gene ID" value="BROFUL_02115"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000041">
        <property type="term" value="P:transition metal ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002751">
        <property type="entry name" value="CbiM/NikMN"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01891">
        <property type="entry name" value="CbiM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="36"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="68"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="94"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="132"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="163"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="199" mass="20885" checksum="C28210638CAE64FA" modified="2015-11-11" version="1">MHISDGVLSPYIVGIGWVITLPVLGVSVRRLRADQVGAYGVVAAAFFAGSTIHVPVGPFSMHLVLNGMAGLLLGWGALTIVTVGLLLQALLISFGGLMVLGINISIMALPGAIMGALGRHWIKQVSPQKRPWIGSLVGGGTILISALLLYITLSTTNTALMPLAKLVFLGHIPIAIVEGIVSFWLVHFLQKVKPSLLGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXK8</accession>
    <name>A0A0M2UXK8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00459</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000060">
        <property type="protein sequence ID" value="KKO20818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20818">
        <property type="protein sequence ID" value="KKO20818"/>
        <property type="gene ID" value="BROFUL_00459"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011460">
        <property type="entry name" value="DUF1566"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07603">
        <property type="entry name" value="DUF1566"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="110" mass="13106" checksum="E84D30C86ED97B8D" modified="2015-11-11" version="1">MWHQAGSRNDMNYQDAKDYISALNKERFAGYRDWRLPTLEEAISLTEPGKKNGDLYLDPIFDSRQRRVWTADLRKDGMAWTVWFDSGFCDYTYTDTNIRHYIRAVRTMLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXN6</accession>
    <name>A0A0M2UXN6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Ion-translocating oxidoreductase complex subunit E</fullName>
            <ecNumber evidence="7">7.-.-.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Rnf electron transport complex subunit E</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rnfE</name>
        <name evidence="8" type="ORF">BROFUL_02039</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">The complex is composed of six subunits: RnfA, RnfB, RnfC, RnfD, RnfE and RnfG.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the NqrDE/RnfAE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.-.-.-" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000207">
        <property type="protein sequence ID" value="KKO19239.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19239">
        <property type="protein sequence ID" value="KKO19239"/>
        <property type="gene ID" value="BROFUL_02039"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2542"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022900">
        <property type="term" value="P:electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00478">
        <property type="entry name" value="RsxE_RnfE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003667">
        <property type="entry name" value="NqrDE/RnfAE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010968">
        <property type="entry name" value="RnfE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02508">
        <property type="entry name" value="Rnf-Nqr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006102">
        <property type="entry name" value="NQR_DE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01948">
        <property type="entry name" value="rnfE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0249">Electron transport</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-1278">Translocase</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="47"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="80"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="106"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="135"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="178"/>
            <end position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19239.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="210" mass="22735" checksum="6B8852DDFB9626B9" modified="2015-11-11" version="1">MDKGKNTMAEQNNLKEFTKGIVQYNPLFVLVLGLCPSLAVTTSVKNGVAMGGAATFVLVCSNLIVSLVRPFIPREIRIPCFIVIIAAFVTMVELLMKAYLPPELNASLGIFIPLIVVNCIIMYRAESFAYKNKPLASVLDGAGLGLGWTLSLCLVSAIREVLGAGTIFGLRVSESYQPAPVMIMAPGAFIVLGLLLGFLNWRKLRKSENL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXU6</accession>
    <name>A0A0M2UXU6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01518</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000155">
        <property type="protein sequence ID" value="KKO19791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19791">
        <property type="protein sequence ID" value="KKO19791"/>
        <property type="gene ID" value="BROFUL_01518"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="85" mass="9408" checksum="1A7734BA2EB9E64C" modified="2015-11-11" version="1">MTIMYKSALLTEIKLMELKLQALKTQVKSKKPKVKTHTSATLYGLLKGSQDITSEDIEAVKIKQVVSLVTADRAITGSHLVPVIW</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXW9</accession>
    <name>A0A0M2UXW9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00340</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000042">
        <property type="protein sequence ID" value="KKO20938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20938">
        <property type="protein sequence ID" value="KKO20938"/>
        <property type="gene ID" value="BROFUL_00340"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20938.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="59" mass="6361" checksum="1BF724727EB57137" modified="2015-11-11" version="1">MINLGCAILQPKGDMIHQVIVRRTEVRLHNAGEQRLATILVRGGTVAANGEAHGECNEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY05</accession>
    <name>A0A0M2UY05_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01410</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000146">
        <property type="protein sequence ID" value="KKO19851.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19851">
        <property type="protein sequence ID" value="KKO19851"/>
        <property type="gene ID" value="BROFUL_01410"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19851.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="49" mass="5584" checksum="9A24FD39E9FE7719" modified="2015-11-11" version="1">MKYRRAGIFGTFVLFVVTTFSSSNIYAKEDQKESGWTIGADNRKTLYSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYB1</accession>
    <name>A0A0M2UYB1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01348</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000139">
        <property type="protein sequence ID" value="KKO19956.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19956">
        <property type="protein sequence ID" value="KKO19956"/>
        <property type="gene ID" value="BROFUL_01348"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1664"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19956.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="213" mass="23615" checksum="E08A3936C5068F49" modified="2015-11-11" version="1">MEDSILDILLDDKLANPIYKPMPKVGEVRTLLTYHSKISFSTCLKCIFSEDTTVLQDTTAILPEDIFSPVVIWINQFVHSKHINNLRIPTITHIKYFLEEGVTQIASGCNLQSAGLAAALCYYAMLTKLSVPANIVVTGGLDGQGRTIPSEFLDDKIEVVLRELHFIDEILVARNSAVSIALPNTLIITEVGSFEQAIDVVRNRNISEERKGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYC8</accession>
    <name>A0A0M2UYC8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00189</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000021">
        <property type="protein sequence ID" value="KKO21078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21078">
        <property type="protein sequence ID" value="KKO21078"/>
        <property type="gene ID" value="BROFUL_00189"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.232"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="267"/>
            <end position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="371" mass="43299" checksum="14B3188519457145" modified="2015-11-11" version="1">MSEYQYYEFRAIDRPLTEAQKSKISALSSRAHVTSHTASFVYNYGDFRGNPEQLMSDYFDAMVYVSDWGSRRLMFRIPLSLIDTKKLGRYCISEEINARETKQGVVLDMNFHDEELADWTEGEGWLDELVEMRAELIRGDSRVLYLAWLKAAENALRAEDIDDDTLEPPVPPGLNQLSGAQNVFVRFLEIDEAMLVVAAQKSEEQKEDHLQLENWVEKLSIEEQHEFLRRLSRGEPNLSVLMNRRLHELANKTQCSADGGGIGQRTIAGLIQAAEEWRSRKQEDERRKEELARKRRLEEFAVKENDAWQQVEILINEKKPKSYDSAIGLLKELRNLRNTREDWKDLKSALQKFNRRIRTGRRYETGYFMPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYH9</accession>
    <name>A0A0M2UYH9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative endonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00623</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20640">
        <property type="protein sequence ID" value="KKO20640"/>
        <property type="gene ID" value="BROFUL_00623"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.788"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009036">
        <property type="term" value="F:type II site-specific deoxyribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041963">
        <property type="entry name" value="BsuBI/PstI_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041454">
        <property type="entry name" value="BsuBI/PstI_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041962">
        <property type="entry name" value="BsuBI/PstI_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009528">
        <property type="entry name" value="Restrct_endonuc_II_BsuBI_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06616">
        <property type="entry name" value="BsuBI_PstI_RE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17728">
        <property type="entry name" value="BsuBI_PstI_RE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BsuBI_PstI_RE_N" evidence="2">
        <location>
            <begin position="12"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="domain" description="BsuBI_PstI_RE" evidence="1">
        <location>
            <begin position="161"/>
            <end position="284"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06616"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="285" mass="32554" checksum="9C67E99E0A4A98B9" modified="2015-11-11" version="1">MAKKIDTKKAERKIKEALEILKMLGFPRQQQNERSALTLLSLLNLKPDDAWEGASDPLIGVTPMMEFFAVHYGKRYAPNTRETVRRQTVHQFMQAGVIVPNPDKPLRPTNSPQAVYQIEPFALKLFREFGRPSWGSHLRSYLHAFKTLKKLYARERDMRRIPVKLSNGRKLSLSPGGQNVLIKKIIDDFCPLFIPGGRVIYVGDTETKWAYFDSDALKELAIEIEEHGKMPDVVVHHVEKNWLVLIEAVISHGPVNPKRRQELKTLFAGSKVGIVYVTAFLDRKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYI7</accession>
    <name>A0A0M2UYI7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00384</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000049">
        <property type="protein sequence ID" value="KKO20887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20887">
        <property type="protein sequence ID" value="KKO20887"/>
        <property type="gene ID" value="BROFUL_00384"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="SSF54001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644100" evidence="1">
        <location>
            <begin position="24"/>
            <end position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="248" mass="28669" checksum="96BAD165E23C4B0F" modified="2015-11-11" version="1">MRYFFAAIIYLGLSTLYCSAVFADVSYADLFLTGKGYKPCEDSLSITPLIPSAPPGAGIPDNPKYKKWCTETFHDGEHIYEAYKKIAFDIDYRSEPPKTDYWQTPTETRQRKKGDCEDSVFLFFSELSELNIDGDIVWGWVINKDESISFAHVWYQLFDKRGRLFIVEGFSKEWNGIIPVEMLPSREERIQTLSIRHNKVHCFADEAMPGFTEPFEGEEIPWALSLCNNTVVKEICQKLHDLFIRSKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYJ9</accession>
    <name>A0A0M2UYJ9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01725</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000180">
        <property type="protein sequence ID" value="KKO19554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19554">
        <property type="protein sequence ID" value="KKO19554"/>
        <property type="gene ID" value="BROFUL_01725"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="81" mass="9448" checksum="D205E73B869D8857" modified="2015-11-11" version="1">MPHLNIVSARRKVRDNFRVPIRATIIILGNKLRLTVRTVERHHNIRWTFRLNRIATSSLRSELKEVLLSRSANFGSVAFAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYK0</accession>
    <name>A0A0M2UYK0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Flagellin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_00612</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Secreted</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Bacterial flagellum</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the bacterial flagellin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000085">
        <property type="protein sequence ID" value="KKO20665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20665">
        <property type="protein sequence ID" value="KKO20665"/>
        <property type="gene ID" value="BROFUL_00612"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009288">
        <property type="term" value="C:bacterial-type flagellum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005198">
        <property type="term" value="F:structural molecule activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001492">
        <property type="entry name" value="Flagellin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046358">
        <property type="entry name" value="Flagellin_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042187">
        <property type="entry name" value="Flagellin_C_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001029">
        <property type="entry name" value="Flagellin_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42792">
        <property type="entry name" value="PTHR42792"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00700">
        <property type="entry name" value="Flagellin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00669">
        <property type="entry name" value="Flagellin_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00207">
        <property type="entry name" value="FLAGELLIN"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="6" id="KW-0966">Cell projection</keyword>
    <keyword evidence="6" id="KW-0969">Cilium</keyword>
    <keyword evidence="6" id="KW-0282">Flagellum</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0964">Secreted</keyword>
    <feature type="domain" description="Flagellin_N" evidence="4">
        <location>
            <begin position="5"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="domain" description="Flagellin_C" evidence="5">
        <location>
            <begin position="223"/>
            <end position="307"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005709"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU362073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="308" mass="32486" checksum="100E58B4C3D2589A" modified="2015-11-11" version="1">MSTRINTNINALNALRSLNDVNSRMAVSQLRLATGKRINNSGDDAAGYTIAKKMNVRAEGLGQALSNIGSAKNLVTVAEGHLNNIVDILTQMKTKATQAADDSLGTSERTAIKSELASLSNQINLEVQQATWNSKSLFSGTGSSNATAGNVLFKFQIGAGNSTSVDLLQFNLLRTGNVSLESGNTGFRSTQLQLDSSGATRLSGNTLTGSLLGSSASAQALMGRIDNAISDVSEALSYIGSVVNRLTYQEASLTVARTNTEAARSRIEDADMAFEQLQSTKLQILQQTASSMLAQANSGPQSILSLFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYM3</accession>
    <name>A0A0M2UYM3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00090</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000009">
        <property type="protein sequence ID" value="KKO21183.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21183">
        <property type="protein sequence ID" value="KKO21183"/>
        <property type="gene ID" value="BROFUL_00090"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.113"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21183.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="45" mass="5126" checksum="A8B4AE7438979708" modified="2015-11-11" version="1">MEGMVGIFEGKESKGAGEKDKVTDELYRQIGQLKVENEWLKKNLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYN3</accession>
    <name>A0A0M2UYN3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Dehydratase OleE</fullName>
            <ecNumber evidence="2">4.2.1.46</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">oleE</name>
        <name evidence="2" type="ORF">BROFUL_00334</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.46" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000042">
        <property type="protein sequence ID" value="KKO20932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20932">
        <property type="protein sequence ID" value="KKO20932"/>
        <property type="gene ID" value="BROFUL_00334"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.411"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008460">
        <property type="term" value="F:dTDP-glucose 4,6-dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008030">
        <property type="entry name" value="NmrA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05368">
        <property type="entry name" value="NmrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NmrA" evidence="1">
        <location>
            <begin position="3"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20932.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="290" mass="31821" checksum="4B29199B15309F4D" modified="2015-11-11" version="1">MKILVTGSTGTVGSEVVKELHKRNAAVRALVHSGGKGGDLPTDVEVVVGDLLDPVAVQKALDGVDKLYLLNAVVPDELTQGLIAYDLAKSLKLQQVVYHSVFEVDRFKDVPHFASKLAIENALKEFDVPFTILRPSYFFQNDKALKEPLVEAGVYPVPLGTRGISAVDVRDIAEAAAIALTTNGHQRKTYNLVGPKVLSGPDAASIWSGLLHREIRYAGEALDSWEEQMRHSVPPWMAFDLRMMFQGYLERGFVAGDGDIKALTELLGHPPRSYEDFARETALAWQNKDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYN9</accession>
    <name>A0A0M2UYN9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Amino acid carrier protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_00042</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the alanine or glycine:cation symporter (AGCS) (TC 2.A.25) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000007">
        <property type="protein sequence ID" value="KKO21203.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21203">
        <property type="protein sequence ID" value="KKO21203"/>
        <property type="gene ID" value="BROFUL_00042"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015655">
        <property type="term" value="F:alanine:sodium symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001463">
        <property type="entry name" value="Na/Ala_symport"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30330">
        <property type="entry name" value="PTHR30330"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01235">
        <property type="entry name" value="Na_Ala_symp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00175">
        <property type="entry name" value="NAALASMPORT"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00835">
        <property type="entry name" value="agcS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0769">Symport</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="43"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="90"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="122"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="151"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="252"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="290"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="339"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="366"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU363064"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO21203.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="408" mass="43039" checksum="112C7DB2D3912CBC" modified="2015-11-11" version="1" fragment="single">YQLGEGDISPFQAVNVALGGTVGVGNIAGVATAIAAGGPGAIFWMWVSGVLGMGTKFFEVALGIHYRRREPGGSMVGGPMTYISCGMGPAWRWFALVFALLGALTAFVIGNMVQSNSVAEGLSYFHIPTWMTGTGLLVFVGLVTIGGIQRIAHVAIVCVPFMCIVYMLGALAIILSNIASMPSALMMIVQDAFRPTTAIGGFAGAALMQTIRYGIAGGVFSNEAGLGSAPIAHATARTDYPVRQAFWGMMEVFVDTIIMCTATALVIILSDAWKSGETGASLTIHGFSSLFGIEAGSAIVAFCMALTAYDTNIAWCFYGETCAAYLLGHGHIVRYTYRFLWLPLVLAGAVVKLDMVWSIADTMNGLMAIPNLIALVVLAPVVVRLIRDFEGTFSRSHGVAGLHKTPHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYP4</accession>
    <name>A0A0M2UYP4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AIRC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00047</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000007">
        <property type="protein sequence ID" value="KKO21208.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21208">
        <property type="protein sequence ID" value="KKO21208"/>
        <property type="gene ID" value="BROFUL_00047"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.60"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039476">
        <property type="entry name" value="P2CMN_synthase_LarB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000031">
        <property type="entry name" value="PurE_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43064">
        <property type="entry name" value="PTHR43064"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00731">
        <property type="entry name" value="AIRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01001">
        <property type="entry name" value="AIRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AIRC" evidence="1">
        <location>
            <begin position="119"/>
            <end position="250"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01001"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21208.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="250" mass="27069" checksum="C125AE2FE7C6BD61" modified="2015-11-11" version="1">MDIDVIEQLLENYKIGKVPMHDVLEKIRELPYKDIGFAKVDSHRKIRCGFPEVIFCLGKTPEQVVKIAGHIVAGENDMLATRATREMYEAVSREFPEAVYHEQARTITIRKTRRKPHKGLILIITAGTSDIPVAEEARVTAEIMGNTVRVLYDVGVAGIHRLMKNHSELLKANVIIVVAGMEGALASVVGGLVDCPVIGVPTSIGYGASFSGITPLLSMLNSCASGVSVVNIDNGFGAAYAASLINRTKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYW2</accession>
    <name>A0A0M2UYW2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Two-component sensor kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_00001</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000001">
        <property type="protein sequence ID" value="KKO21263.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21263">
        <property type="protein sequence ID" value="KKO21263"/>
        <property type="gene ID" value="BROFUL_00001"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033479">
        <property type="entry name" value="dCache_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029151">
        <property type="entry name" value="Sensor-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02743">
        <property type="entry name" value="dCache_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103190">
        <property type="entry name" value="SSF103190"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0418">Kinase</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="306"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="7">
        <location>
            <begin position="330"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="382"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO21263.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="382" mass="42535" checksum="4FB4222D8B10CAAF" modified="2015-11-11" version="1" fragment="single">MIIRIYGVSQMNPFLSIKSRLLTFALCISLIPIVLMTMIHYYHAKNALQHRVFEDLKAIARSRELHVSAYMERIEMRAADFSTDGFIRRCFGSIIRGENLQSRKIIRLNEYLIKKKRAFNRQLIAIALVDKNGKIVSSTDKRLLGKDFSAQDVFMQGIRKSCGETYLGQLHYSPDLDVKCIFVSAPIVAGSGVETLGVIINVYSLSALNGITTNRIGMGETGEVYLVSKDKEMLTHSRFFDDAVSPEVMDTKPVRKLVEEGKEMVGIYTGYRGKTVVGVSRYLPAYGWMLLAEIDKAEAFAPLKRLGLIALFFSVVSAGVVTGLGISFAVSTSKPIREVKDAAERFAGGDLDYRVKTTRRDEIGVLAGSFNAMAEKLKEEIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ01</accession>
    <name>A0A0M2UZ01_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF5666 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00435</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000057">
        <property type="protein sequence ID" value="KKO20850.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20850">
        <property type="protein sequence ID" value="KKO20850"/>
        <property type="gene ID" value="BROFUL_00435"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043724">
        <property type="entry name" value="DUF5666"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18914">
        <property type="entry name" value="DUF5666"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644181" description="DUF5666 domain-containing protein" evidence="1">
        <location>
            <begin position="24"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="domain" description="DUF5666" evidence="2">
        <location>
            <begin position="27"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18914"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20850.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="91" mass="10423" checksum="83F49EDF670F68B0" modified="2015-11-11" version="1">MKNYFKVLIVSLFLVLCLSSAFADDLEGRIESINQSEKSFVVQGIKFFVTQSTDYDDGLKGFADLKEGQKVEVDFEYRDGKYFATEIELED</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ13</accession>
    <name>A0A0M2UZ13_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00214</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000026">
        <property type="protein sequence ID" value="KKO21057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21057">
        <property type="protein sequence ID" value="KKO21057"/>
        <property type="gene ID" value="BROFUL_00214"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007433">
        <property type="entry name" value="DUF481"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04338">
        <property type="entry name" value="DUF481"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="35"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="187"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO21057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="408" mass="45749" checksum="22196EC8F8BABDF4" modified="2015-11-11" version="1">MQRKVYFGKVSPQYPFSLIRPGSERFNFLNNKRSMLLLPLVFLFIAWVFHAGMSYSDEIKTIDGAVLTGEIINVAAESISLRTTDGTVSDLPLKDVGLVSRGSEICIINRDGKKFSVLRIPKPANFSMNDIVSTKTDALTLQDLGTSTANVVAKASAPETKATSGQPPVSGGDKIVQAEAATVTAPPRTWKGNIDAGVNTKDGNTESTTTHIKGGYANERKRDNIYFDAIALYETVTNNDTDVDEETVNEQRATGKYEYKHSPRLYSFFNQYFEHDELESLNYRSISSPGAGYRFIDKERLKYKAEAGPAYTYERFHGGIIDDYMGLRVGQYLDWLFWKDTKFYAKSEFVESIEDTKDWRVDTGLGVRHNLTKSIAVSLEFLDQYDNTPAEGKEKEDRTFIGSVGYNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ65</accession>
    <name>A0A0M2UZ65_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Helicase subunit of dna repair complex</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">snf2_1</name>
        <name evidence="4" type="ORF">BROFUL_01522</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000157">
        <property type="protein sequence ID" value="KKO19764.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19764">
        <property type="protein sequence ID" value="KKO19764"/>
        <property type="gene ID" value="BROFUL_01522"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1883"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140658">
        <property type="term" value="F:ATP-dependent chromatin remodeler activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10810">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038718">
        <property type="entry name" value="SNF2-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000330">
        <property type="entry name" value="SNF2_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00176">
        <property type="entry name" value="SNF2-rel_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0347">Helicase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="2">
        <location>
            <begin position="35"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="3">
        <location>
            <begin position="743"/>
            <end position="923"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="373"/>
            <end position="407"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19764.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="954" mass="110124" checksum="7C326BBD2212EBAD" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZL1</accession>
    <name>A0A0M2UZL1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00230</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial secretin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000028">
        <property type="protein sequence ID" value="KKO21045.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21045">
        <property type="protein sequence ID" value="KKO21045"/>
        <property type="gene ID" value="BROFUL_00230"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001775">
        <property type="entry name" value="GspD/PilQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004846">
        <property type="entry name" value="T2SS/T3SS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00263">
        <property type="entry name" value="Secretin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00811">
        <property type="entry name" value="BCTERIALGSPD"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="41"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="92"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU004003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO21045.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="736" mass="81950" checksum="5ABEA6F10C7B98B6" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZL9</accession>
    <name>A0A0M2UZL9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01331</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000139">
        <property type="protein sequence ID" value="KKO19939.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19939">
        <property type="protein sequence ID" value="KKO19939"/>
        <property type="gene ID" value="BROFUL_01331"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19939.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="68" mass="7699" checksum="4DC9A81882989503" modified="2015-11-11" version="1">MKFDLRMLIIVGLNPPLNPLPGEDFFLLPLRLLRELSRTRRSGMCKTGTEISGKAAHMPAFMTGEKRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZQ7</accession>
    <name>A0A0M2UZQ7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00807</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000103">
        <property type="protein sequence ID" value="KKO20451.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20451">
        <property type="protein sequence ID" value="KKO20451"/>
        <property type="gene ID" value="BROFUL_00807"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20451.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="172" mass="20080" checksum="DEED47866AB5BE8D" modified="2015-11-11" version="1">MEWEIKGGSSGCLLCKKTLSEGEEYYSALFDDNKMFIRKDFCVLCWNSGKEGRGFSFWKTKVPKKDKSVQTMVNIEVLLDMFMKLEGADENHQRSLRYVLALYLIRKKVFKLKSLKRQNGEEAIVLSYPREEREFDVLNPHLKEEEIESLTAEMGQLLNYSCLDHEVMMTAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZU4</accession>
    <name>A0A0M2UZU4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7 10">Phosphoglycerate kinase</fullName>
            <ecNumber evidence="2 7 10">2.7.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">pgk</name>
        <name evidence="12" type="ORF">BROFUL_00150</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 7 10">
            <text>(2R)-3-phosphoglycerate + ATP = (2R)-3-phospho-glyceroyl phosphate + ADP</text>
            <dbReference type="Rhea" id="RHEA:14801"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57604"/>
            <dbReference type="ChEBI" id="CHEBI:58272"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.2.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7 11">Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 2/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7 11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7 10">Belongs to the phosphoglycerate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.2.3" evidence="2 7 10"/>
    <dbReference type="EMBL" id="LAQJ01000017">
        <property type="protein sequence ID" value="KKO21105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21105">
        <property type="protein sequence ID" value="KKO21105"/>
        <property type="gene ID" value="BROFUL_00150"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.188"/>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00185"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004618">
        <property type="term" value="F:phosphoglycerate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00318">
        <property type="entry name" value="Phosphoglycerate_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1260">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00145">
        <property type="entry name" value="Phosphoglyc_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001576">
        <property type="entry name" value="Phosphoglycerate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015911">
        <property type="entry name" value="Phosphoglycerate_kinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015824">
        <property type="entry name" value="Phosphoglycerate_kinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036043">
        <property type="entry name" value="Phosphoglycerate_kinase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11406">
        <property type="entry name" value="PTHR11406"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00162">
        <property type="entry name" value="PGK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000724">
        <property type="entry name" value="Pgk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00477">
        <property type="entry name" value="PHGLYCKINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53748">
        <property type="entry name" value="SSF53748"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00111">
        <property type="entry name" value="PGLYCERATE_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 11" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="5 7 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="4 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7 10" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="7 8">
        <location>
            <begin position="21"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7 8">
        <location>
            <begin position="60"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7 8">
        <location>
            <position position="37"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 8">
        <location>
            <position position="121"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 8">
        <location>
            <position position="154"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 9">
        <location>
            <position position="204"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 9">
        <location>
            <position position="326"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 9">
        <location>
            <begin position="352"/>
            <end position="355"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000724-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000724-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU000695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO21105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="408" mass="44815" checksum="F28A85988C7F4C48" modified="2015-11-11" version="1">MYKLFIKDIDVRRKRVMVRTDYNVPLDDEGNITDDTRIRATLPTINYLLDEEAKVIIASHLGRPEGKAIPKYSLKPVARRLQRFLSEKVKVTLAGDCIGPAVKKQIDEMRCGDVMVLENLRFHPGEEKNDPTFAKELASLCEVFIQDAFGNCHRKHASMIGVDDHVPSAAGFLLKKEMDYFEKAVNNPMRPVVALLGGAKVSDKIKIVENLSKKMDKVLIGGAMAFTFLKAQGFCVGKSLVEDSMLDVVKNLMDISRKNGTKLYLPVDFVVAETFDGQAETKVVPYQEIPDKWIALDIGPATTKLFIEALQDAKTIVWNGPMGAFELDAFSRGTYAMVDAVTSSHASTIVGGGDTDMAFHKSGKTHEVSFISTGGGAFLKLLEGGELPGIASLSDRRKSPRDGQSVPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZW2</accession>
    <name>A0A0M2UZW2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 9">Urocanate hydratase</fullName>
            <shortName evidence="9">Urocanase</shortName>
            <ecNumber evidence="4 9">4.2.1.49</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8 9">Imidazolonepropionate hydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9 13" type="primary">hutU</name>
        <name evidence="13" type="ORF">BROFUL_00126</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the conversion of urocanate to 4-imidazolone-5-propionate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>4-imidazolone-5-propanoate = H2O + trans-urocanate</text>
            <dbReference type="Rhea" id="RHEA:13101"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17771"/>
            <dbReference type="ChEBI" id="CHEBI:77893"/>
            <dbReference type="EC" id="4.2.1.49"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </cofactor>
        <text evidence="9">Binds 1 NAD(+) per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 9">Amino-acid degradation; L-histidine degradation into L-glutamate; N-formimidoyl-L-glutamate from L-histidine: step 2/3.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the urocanase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.49" evidence="4 9"/>
    <dbReference type="EMBL" id="LAQJ01000016">
        <property type="protein sequence ID" value="KKO21125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21125">
        <property type="protein sequence ID" value="KKO21125"/>
        <property type="gene ID" value="BROFUL_00126"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.158"/>
    <dbReference type="UniPathway" id="UPA00379">
        <property type="reaction ID" value="UER00550"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016153">
        <property type="term" value="F:urocanate hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019556">
        <property type="term" value="P:histidine catabolic process to glutamate and formamide"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019557">
        <property type="term" value="P:histidine catabolic process to glutamate and formate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10730">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00577">
        <property type="entry name" value="HutU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023637">
        <property type="entry name" value="Urocanase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035401">
        <property type="entry name" value="Urocanase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038364">
        <property type="entry name" value="Urocanase_central_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023636">
        <property type="entry name" value="Urocanase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035400">
        <property type="entry name" value="Urocanase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035085">
        <property type="entry name" value="Urocanase_Rossmann-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036190">
        <property type="entry name" value="Urocanase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12216">
        <property type="entry name" value="PTHR12216"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01175">
        <property type="entry name" value="Urocanase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17392">
        <property type="entry name" value="Urocanase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17391">
        <property type="entry name" value="Urocanase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001423">
        <property type="entry name" value="Urocanate_hydrat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111326">
        <property type="entry name" value="SSF111326"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01228">
        <property type="entry name" value="hutU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01233">
        <property type="entry name" value="UROCANASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 9" id="KW-0369">Histidine metabolism</keyword>
    <keyword evidence="7 9 13" id="KW-0456">Lyase</keyword>
    <keyword evidence="6 9" id="KW-0520">NAD</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Urocanase_N" evidence="11">
        <location>
            <begin position="15"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="domain" description="Urocanase" evidence="10">
        <location>
            <begin position="144"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="domain" description="Urocanase_C" evidence="12">
        <location>
            <begin position="359"/>
            <end position="553"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="418"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="56"/>
            <end position="57"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="201"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="206"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="247"/>
            <end position="248"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="277"/>
            <end position="278"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="325"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="500"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000607"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004794"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007578"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00031640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00577"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF01175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF17391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF17392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO21125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="561" mass="61994" checksum="207C98909E848DF3" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZY3</accession>
    <name>A0A0M2UZY3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pentapeptide repeats (8 copies)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00765</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000096">
        <property type="protein sequence ID" value="KKO20521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20521">
        <property type="protein sequence ID" value="KKO20521"/>
        <property type="gene ID" value="BROFUL_00765"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001646">
        <property type="entry name" value="5peptide_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13599">
        <property type="entry name" value="Pentapeptide_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20521.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="217" mass="25131" checksum="CF78302CFED97175" modified="2015-11-11" version="1">MSHAEENQRQDKTIFIQETVSGINLTQEDFSNRRLIGSTVQSFTMQDGRCRYLRAQGTRFQNFSVDHVLCDQGHYQGCSWTGLEVRNSFLTGSHFFGCTFEATRGELSSFGLSVFSGCKLRGSRLREVSLSGTWWQGCRFEEEDYFFVRCPSSIFLETTFVGCRLQKAIFRAATFIRCTFERCTLNESVFHKARFIDTKWIDTDIQQAADLERVRYD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V046</accession>
    <name>A0A0M2V046_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">FGE-sulfatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00705</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20586.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20586">
        <property type="protein sequence ID" value="KKO20586"/>
        <property type="gene ID" value="BROFUL_00705"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.895"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016187">
        <property type="entry name" value="CTDL_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005532">
        <property type="entry name" value="SUMF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042095">
        <property type="entry name" value="SUMF_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03781">
        <property type="entry name" value="FGE-sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56436">
        <property type="entry name" value="SSF56436"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644122" description="FGE-sulfatase domain-containing protein" evidence="1">
        <location>
            <begin position="27"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="domain" description="FGE-sulfatase" evidence="2">
        <location>
            <begin position="32"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20586.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="266" mass="30746" checksum="6829520D4390F752" modified="2015-11-11" version="1">MLMKKGFAMLCMISFLSISSLSKAIAAEEKHADMVLVPAGEFTMGDNTRYNWYFMLAYNIYDGPEHTIYLDAFFIDKYEVTNEQYKKFVEETGYRIPRCWNDARFNRPNQPVVGVTWEDAAAYAQWAGKRLPTEAEWEKAARGTDKRLWPWGNKFDKMKCNVWESSESGQRETKPVGTYENGKSPYGCYDMAGNVWEWCADYYDQNYYSVSPRKNPPGPANGFQRVMRGGGLLYFGHYARCAARYRAPWYAQSPQVGFRCVKSAEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V047</accession>
    <name>A0A0M2V047_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01161</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000125">
        <property type="protein sequence ID" value="KKO20119.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20119">
        <property type="protein sequence ID" value="KKO20119"/>
        <property type="gene ID" value="BROFUL_01161"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20119.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="36" mass="4075" checksum="F6060F2205342AE9" modified="2015-11-11" version="1">MSYFVGIDLHSDNSYVGVIDKNDSRIFGKKLPMILT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1B8</accession>
    <name>A0A0M2V1B8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Radical SAM core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_00320</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000039">
        <property type="protein sequence ID" value="KKO20951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20951">
        <property type="protein sequence ID" value="KKO20951"/>
        <property type="gene ID" value="BROFUL_00320"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040086">
        <property type="entry name" value="MJ0683-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43432">
        <property type="entry name" value="PTHR43432"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01084">
        <property type="entry name" value="Uncharacterised_Radical_SAM_Su"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="6">
        <location>
            <begin position="27"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="315" mass="36007" checksum="0F184892CB9D7C3B" modified="2015-11-11" version="1">MQINFIERKGHVLTRSTLKCLSQVASINPTLGCIHQCVYCYARGYSMYPGDGNVLVYGNMPEKLKRELTTRRKLPDYVFFSTTCDVLQPIPQVLRVTYELMSTLLEHGVGINLLTKGRIPLKFLELFSRYRKLVHIQVGITTVDRNIQKKIEPFAATPQERLLNIKRLCEIGIVPEVKLDPLIPGVTDTESNATALFWEIQGFGIHSACMNYLFLRPQIKKNLCKALRNTPFLQKILSYYQTGMPLNLLAERSRVTALAVEYRRQAYENISRWAKDFGIDAYVCGCKNPDITGEPLCGMNWGQHCEKHLGQKQLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1L0</accession>
    <name>A0A0M2V1L0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00248</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000030">
        <property type="protein sequence ID" value="KKO21031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21031">
        <property type="protein sequence ID" value="KKO21031"/>
        <property type="gene ID" value="BROFUL_00248"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="30" mass="3336" checksum="4A259EA625089944" modified="2015-11-11" version="1" fragment="single">MKGMKDDKAVIPGGNFVTQSYFIKKSKEST</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1S7</accession>
    <name>A0A0M2V1S7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Transport protein TonB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">BROFUL_00627</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
            <orientation evidence="1">Periplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the TonB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000086">
        <property type="protein sequence ID" value="KKO20644.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20644">
        <property type="protein sequence ID" value="KKO20644"/>
        <property type="gene ID" value="BROFUL_00627"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006260">
        <property type="entry name" value="TonB/TolA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037682">
        <property type="entry name" value="TonB_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03544">
        <property type="entry name" value="TonB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01352">
        <property type="entry name" value="tonB_Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="domain" description="TonB_C" evidence="11">
        <location>
            <begin position="200"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="85"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="9">
        <location>
            <begin position="97"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="9">
        <location>
            <begin position="177"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004383"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF03544"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO20644.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="279" mass="31126" checksum="6A4B80E39A738CF0" modified="2015-11-11" version="1">MTRERFGYFKIKPGTYGIIKAFILALSIHGALFLVGGKYYGKPVQYSVQSDTGSIDVDLLTAVSQTDTESVQSVTPAMEKQQEVMKAVPQEKPEAPAQPNVATTQSSTPTAERQQVAVETLPKPETDTVMPDASTTERQQETVKITPREEQMARPHPNTDTAQSVASPKEKQHETVKTMPQSSLGTIRTKSRPGYFQNQPPEYPQLARQMRQEGLVILRVEIDSKGIPVQVEVEQSSGYQLLDRAALKAVRHWRFQPERIGDLPVKSVVAIPVRFRLEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V214</accession>
    <name>A0A0M2V214_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00546</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000076">
        <property type="protein sequence ID" value="KKO20734.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20734">
        <property type="protein sequence ID" value="KKO20734"/>
        <property type="gene ID" value="BROFUL_00546"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20734.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="300" mass="33804" checksum="FBE6219F83B403A1" modified="2015-11-11" version="1">MHSNITHEYATYTEGMAAYYKQLTARMRQEFPDAKWIMEPARLYDNRNTIYNWYIDEWIDQVKDRADRSELTPDMLTQETGNGTQFVDDSNNFNSGLSITRDEVGVSQSSRVAENENRLLAAKAGINGAWYNWFGRFGGADTMPNFQTITAVYPRLKLIRCLPNWDNLNNVPLTNRSWDGTVYRSTKSYTDPHVMYSRHPKTGKLFAVFITHNGVIKLNPGETVTSVQHVDGYFMESGDGSADVTIVGDEIRLRNEVSIPSSNGQSQGSGYIFTLLTNSMPDGSIIINSGADYTDSTQQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V221</accession>
    <name>A0A0M2V221_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00538</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000075">
        <property type="protein sequence ID" value="KKO20739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20739">
        <property type="protein sequence ID" value="KKO20739"/>
        <property type="gene ID" value="BROFUL_00538"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="85" mass="9195" checksum="E73757F48068D0E5" modified="2015-11-11" version="1">MIGITSLLLINAVNILLDKRQGDDSLGFLSCSASEIERTFYLFDGLAFDRMGVYHGSPYIAVFQHLLDSADVVVGLQEVGGETVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2B7</accession>
    <name>A0A0M2V2B7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4145 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00429</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000057">
        <property type="protein sequence ID" value="KKO20844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20844">
        <property type="protein sequence ID" value="KKO20844"/>
        <property type="gene ID" value="BROFUL_00429"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025285">
        <property type="entry name" value="DUF4145"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13643">
        <property type="entry name" value="DUF4145"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4145" evidence="1">
        <location>
            <begin position="90"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="220" mass="24579" checksum="5A9C05FA05D53036" modified="2015-11-11" version="1">MKCPHCLESFHDFYEVIPVGNDANGDWGVISRKCPSCERVVLVLGSGKIGSIGGRHVLEYIRDERLIYPRAPSRAPLSKEVPEVFASEYREACTVLTDSPKASAALSRRCLQHLLRERAQVRPSNLADEIQQVIGDGTLPVYIAESIDDVRNIGNFATYPIKSERPGEIVDVEPGEADWNLDVLEALFNFYFVQPAIIKKKREILSLKLKEADKKGAKRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V300</accession>
    <name>A0A0M2V300_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UPF0234 protein BROFUL_00216</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00216</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0234 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000026">
        <property type="protein sequence ID" value="KKO21059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21059">
        <property type="protein sequence ID" value="KKO21059"/>
        <property type="gene ID" value="BROFUL_00216"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd11740">
        <property type="entry name" value="YajQ_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.860">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.990">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00632">
        <property type="entry name" value="UPF0234"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007551">
        <property type="entry name" value="DUF520"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035571">
        <property type="entry name" value="UPF0234-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035570">
        <property type="entry name" value="UPF0234_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036183">
        <property type="entry name" value="YajQ-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30476">
        <property type="entry name" value="PTHR30476"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04461">
        <property type="entry name" value="DUF520"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89963">
        <property type="entry name" value="SSF89963"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00632"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="164" mass="18612" checksum="B1BB7F5553076D21" modified="2015-11-11" version="1">MADTHSFDIACKVEMHEVNNAVDQAKKQLAVRYDFKGSKSSITLNSDNSITVIADDDYKLESLNEILKEKLEKRGIPLKALDFSKKENALGGTIRQVVTFQSGIPMEKAKEIVKFIKGLKLKVQSQIQEEKIRVTGQKIDDLQAIIKAIKDQDYDFAMQFINYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V391</accession>
    <name>A0A0M2V391_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00135</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000016">
        <property type="protein sequence ID" value="KKO21134.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21134">
        <property type="protein sequence ID" value="KKO21134"/>
        <property type="gene ID" value="BROFUL_00135"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006230">
        <property type="entry name" value="MutL"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13941">
        <property type="entry name" value="MutL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21134.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="595" mass="64408" checksum="BB4AFA9B7C6E7647" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V3C8</accession>
    <name>A0A0M2V3C8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00098</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000011">
        <property type="protein sequence ID" value="KKO21169.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21169">
        <property type="protein sequence ID" value="KKO21169"/>
        <property type="gene ID" value="BROFUL_00098"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.124"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035069">
        <property type="entry name" value="TTHA1013/TTHA0281-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143100">
        <property type="entry name" value="SSF143100"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="33"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21169.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="74" mass="8146" checksum="A2D7B5B10531DB15" modified="2015-11-11" version="1">MQIKLTAVFQKVPEGYIGFVEELPGVNTQGDTLEEARSNLEEAVQLVLDANRQLAEESLQGQDVIKESFPVSTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ06</accession>
    <name>A0A0M2UQ06_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03344</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000306">
        <property type="protein sequence ID" value="KKO17972.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17972">
        <property type="protein sequence ID" value="KKO17972"/>
        <property type="gene ID" value="BROFUL_03344"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17972.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="73" mass="7809" checksum="05010E7EA610E0FF" modified="2015-11-11" version="1">MLFPSPCLGMSRHTQPEKDVALLLSQLGLTLPEQPPPKVYASDRSVCSADLFALPLDFPGSAGCIPLELRKSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ11</accession>
    <name>A0A0M2UQ11_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ion-translocating oxidoreductase complex subunit G</fullName>
            <ecNumber evidence="6">7.-.-.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Rnf electron transport complex subunit G</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rnfG</name>
        <name evidence="8" type="ORF">BROFUL_03349</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="6">The complex is composed of six subunits: RnfA, RnfB, RnfC, RnfD, RnfE and RnfG.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the RnfG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.-.-.-" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000306">
        <property type="protein sequence ID" value="KKO17977.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17977">
        <property type="protein sequence ID" value="KKO17977"/>
        <property type="gene ID" value="BROFUL_03349"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00479">
        <property type="entry name" value="RsxG_RnfG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007329">
        <property type="entry name" value="FMN-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010209">
        <property type="entry name" value="Ion_transpt_RnfG/RsxG"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36118">
        <property type="entry name" value="PTHR36118"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04205">
        <property type="entry name" value="FMN_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006091">
        <property type="entry name" value="E_trnsport_RnfG"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00900">
        <property type="entry name" value="FMN_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0249">Electron transport</keyword>
    <keyword evidence="3 6" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4 6" id="KW-0288">FMN</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-1278">Translocase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1 6" id="KW-0813">Transport</keyword>
    <feature type="domain" description="FMN_bind" evidence="7">
        <location>
            <begin position="91"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="modified residue" description="FMN phosphoryl threonine" evidence="6">
        <location>
            <position position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO17977.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="242" mass="26912" checksum="24D402324EB1E0C2" modified="2015-11-11" version="1">MQKKAQYTITLTLVSLLASLGVSSTFLLTKDTIKRKELAVRTEALYVVLPGLESAPDEVTPSEVSDQDRVYKGLNKAGQLIGYAACGEAQGYSSKIKVMVGLDPRLEKIIGVNILAQNETPGLGTKMTEVESTTTLWSVIFGKDPKAIDWDSEEEWQLPMFRQPERMRKFGLLKKEKKAQPWFQQQFKQKTCNQLIVAKVKDDERITAITGATISTKAVVNAVQNAIDKIKGIVQPPAWEIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQD8</accession>
    <name>A0A0M2UQD8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">8-amino-7-oxononanoate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03446</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000315">
        <property type="protein sequence ID" value="KKO17870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17870">
        <property type="protein sequence ID" value="KKO17870"/>
        <property type="gene ID" value="BROFUL_03446"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4233"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="1">
        <location>
            <begin position="1"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO17870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="215" mass="22886" checksum="84B9DC7BFF5B6166" modified="2015-11-11" version="1">MDGDTASLPETADIARRYDAMLMVDDAHATGVFGKQGKGFIEHCGLEGKIDVVMGSLSKAIGSIGGFIAGSKPLIAFLKNKARPFIYTTALPPAVCAASLAGLTLIRDDASLIDGLWKNIHEVKSRLSKFANTPAVESPIIPLIVGSAEDAAKLSAKLYENGILIPAIRPPTVPPNTSRLRISLMATHSEDDIRRLMNLLQCIGLLTRENTGNHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQH8</accession>
    <name>A0A0M2UQH8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycoside hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02952</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyl hydrolase 57 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000278">
        <property type="protein sequence ID" value="KKO18353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18353">
        <property type="protein sequence ID" value="KKO18353"/>
        <property type="gene ID" value="BROFUL_02952"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3656"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021923">
        <property type="entry name" value="DUF3536"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011330">
        <property type="entry name" value="Glyco_hydro/deAcase_b/a-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027291">
        <property type="entry name" value="Glyco_hydro_38_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004300">
        <property type="entry name" value="Glyco_hydro_57_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12055">
        <property type="entry name" value="DUF3536"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03065">
        <property type="entry name" value="Glyco_hydro_57"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88713">
        <property type="entry name" value="SSF88713"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_hydro_57" evidence="2">
        <location>
            <begin position="91"/>
            <end position="307"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU361196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="824" mass="96203" checksum="EFF49301FE2579E0" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQM8</accession>
    <name>A0A0M2UQM8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03358</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000307">
        <property type="protein sequence ID" value="KKO17960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17960">
        <property type="protein sequence ID" value="KKO17960"/>
        <property type="gene ID" value="BROFUL_03358"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="SSF50494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="270" mass="29658" checksum="869EE7A339D7EAEB" modified="2015-11-11" version="1">MSKQIPEIIEGHPTCVIKYNSQTPPVEVPADVRIRDIQNNWQRRNQRFETLVGGIAVWNSQFKHECQIPGTLGAIVFHAATSQFMGLSNYHVLVLNKQGKAEGKKGDTIMQGNFNEYPPNRNNSIGTLFKWNKKLDCAICALRDYSEVGEILDCSKRPQGAISPLVGMKVIKSGMATGLTRGIVDGVSRTDKSFTVIPDPGNPSPTGEISTGGNSGSVWLEFESFCAVGLHYDGEKNSDPGAERAWAKQMTEVAKELEIEFTTGITEIRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQT1</accession>
    <name>A0A0M2UQT1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02857</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000269">
        <property type="protein sequence ID" value="KKO18448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18448">
        <property type="protein sequence ID" value="KKO18448"/>
        <property type="gene ID" value="BROFUL_02857"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3535"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000412">
        <property type="entry name" value="ABC_2_transport"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51012">
        <property type="entry name" value="ABC_TM2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="143"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="195"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="224"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="254"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="317"/>
            <end position="335"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="340" mass="37497" checksum="EA154EE2BF138A66" modified="2015-11-11" version="1">MLVFGFGITSDVEHVRYASFDLDHSPESRTYLEQFAGSQRYFTLTPPIRSAEEALERLQSNNISLVVEVPPDFGRDFRRGSSPDISVAVDGADPYRGETIAQYAKGVHDTLMNDPASELSSGPDKYTAKLQTRFMYNPTFESIYSIVPSVPSLLLVLIPAVLMAVSVVREKELGSIINFYVTPTGRLEYLMGKQLPYIVIGMMNYFILVVMALVIFGVPIKGSFLMLTMCTLLYLIVTTSIGMLISTFTSSQVAAVFVTAILTILPTTQFSGLLQPVSTLEGRARFIGSIWPTTYYMHASVGAYTKGLGPGLLMQDIIFLACCIPVLLTVSVVNMRKQEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URA6</accession>
    <name>A0A0M2URA6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_02913</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18407">
        <property type="protein sequence ID" value="KKO18407"/>
        <property type="gene ID" value="BROFUL_02913"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3605"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019829">
        <property type="term" value="F:ATPase-coupled cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023299">
        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018303">
        <property type="entry name" value="ATPase_P-typ_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008250">
        <property type="entry name" value="ATPase_P-typ_transduc_dom_A_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027256">
        <property type="entry name" value="P-typ_ATPase_IB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001757">
        <property type="entry name" value="P_typ_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044492">
        <property type="entry name" value="P_typ_ATPase_HD_dom"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00941">
        <property type="entry name" value="CDATPASE"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00027">
        <property type="entry name" value="p-type_atpase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81653">
        <property type="entry name" value="SSF81653"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01525">
        <property type="entry name" value="ATPase-IB_hvy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01494">
        <property type="entry name" value="ATPase_P-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00154">
        <property type="entry name" value="ATPASE_E1_E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-1278">Translocase</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="94"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="645"/>
            <end position="670"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU362081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="698" mass="76816" checksum="9A208BD3E3C17A78" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URK4</accession>
    <name>A0A0M2URK4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Rieske domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_02645</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18693.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18693">
        <property type="protein sequence ID" value="KKO18693"/>
        <property type="gene ID" value="BROFUL_02645"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.102.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017941">
        <property type="entry name" value="Rieske_2Fe-2S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036922">
        <property type="entry name" value="Rieske_2Fe-2S_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014349">
        <property type="entry name" value="Rieske_Fe-S_prot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005805">
        <property type="entry name" value="Rieske_Fe-S_prot_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10134">
        <property type="entry name" value="PTHR10134"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00355">
        <property type="entry name" value="Rieske"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00162">
        <property type="entry name" value="RIESKE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50022">
        <property type="entry name" value="SSF50022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51296">
        <property type="entry name" value="RIESKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="domain" description="Rieske" evidence="8">
        <location>
            <begin position="87"/>
            <end position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18693.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="162" mass="17981" checksum="D2F8E86A7887E554" modified="2015-11-11" version="1">MENNRRKFLKIVSHSLGGVLAAGIAAPLVGLGIHPWLKETVYGTEDFINLGKLEDFPIGIPKKMNVTSSKMDAWNVFEGLVMGSVWVLRKEDNSLSVFSVNCPHLGCGINWGEEEKQFLCPCHEGIFDINGKVVSGPAPRSLYSYETKIENDNVLVNYKKLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URK5</accession>
    <name>A0A0M2URK5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Cobalt transporter protein CbiM</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">BROFUL_02821</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000265">
        <property type="protein sequence ID" value="KKO18497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18497">
        <property type="protein sequence ID" value="KKO18497"/>
        <property type="gene ID" value="BROFUL_02821"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3490"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006824">
        <property type="term" value="P:cobalt ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018024">
        <property type="entry name" value="CbiM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002751">
        <property type="entry name" value="CbiM/NikMN"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43627">
        <property type="entry name" value="PTHR43627"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01891">
        <property type="entry name" value="CbiM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="10" id="KW-0170">Cobalt</keyword>
    <keyword evidence="2" id="KW-0171">Cobalt transport</keyword>
    <keyword evidence="8" id="KW-0406">Ion transport</keyword>
    <keyword evidence="9 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="41"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="77"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="108"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="140"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="181"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022426"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO18497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="231" mass="24859" checksum="923DD4FF4C38EA86" modified="2015-11-11" version="1">MHITEGILPFEWFATWFAVSTPFVGIGIYQVKRKKRSMPGYLPLVGLLGAAVFVFSCFPIPVIALNGMATSHPCGTGLSAVLLGPFVSVLVAGIALLIQALFLAHGGLTTLGGNIFSMGILGSFSGYFAFKMAQRCRLPLFWCGFLAGVVSDIFTYLGTSLELGLLVIRNGESFFRATAEIFAVFMMTSQGILCLVEGAVVGFVMVFIYKRRPGILLNLGVIRNDTKPIGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URL7</accession>
    <name>A0A0M2URL7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Histidine kinase</fullName>
            <ecNumber evidence="4">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="18" type="ORF">BROFUL_02782</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000264">
        <property type="protein sequence ID" value="KKO18512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18512">
        <property type="protein sequence ID" value="KKO18512"/>
        <property type="gene ID" value="BROFUL_02782"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033479">
        <property type="entry name" value="dCache_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001610">
        <property type="entry name" value="PAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013655">
        <property type="entry name" value="PAS_fold_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029151">
        <property type="entry name" value="Sensor-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02743">
        <property type="entry name" value="dCache_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13185">
        <property type="entry name" value="GAF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08447">
        <property type="entry name" value="PAS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13426">
        <property type="entry name" value="PAS_9"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00065">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00086">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103190">
        <property type="entry name" value="SSF103190"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="12" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="9 18" id="KW-0418">Kinase</keyword>
    <keyword evidence="11 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <keyword evidence="8 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10 13" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="315"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="17">
        <location>
            <begin position="339"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="15">
        <location>
            <begin position="396"/>
            <end position="455"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="16">
        <location>
            <begin position="472"/>
            <end position="524"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="15">
        <location>
            <begin position="543"/>
            <end position="580"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="16">
        <location>
            <begin position="616"/>
            <end position="668"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="15">
        <location>
            <begin position="831"/>
            <end position="903"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="16">
        <location>
            <begin position="908"/>
            <end position="960"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="14">
        <location>
            <begin position="973"/>
            <end position="1186"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="12">
        <location>
            <begin position="515"/>
            <end position="546"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="KKO18512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1206" mass="136869" checksum="FD04DC0C04D0360C" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URQ2</accession>
    <name>A0A0M2URQ2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">UDP-3-O-acylglucosamine N-acyltransferase</fullName>
            <ecNumber evidence="6">2.3.1.191</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">lpxD</name>
        <name evidence="9" type="ORF">BROFUL_02754</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>a (3R)-hydroxyacyl-[ACP] + a UDP-3-O-[(3R)-3-hydroxyacyl]-alpha-D-glucosamine = a UDP-2-N,3-O-bis[(3R)-3-hydroxyacyl]-alpha-D-glucosamine + H(+) + holo-[ACP]</text>
            <dbReference type="Rhea" id="RHEA:53836"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="Rhea" id="RHEA-COMP:9945"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="ChEBI" id="CHEBI:78827"/>
            <dbReference type="ChEBI" id="CHEBI:137740"/>
            <dbReference type="ChEBI" id="CHEBI:137748"/>
            <dbReference type="EC" id="2.3.1.191"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="6">Bacterial outer membrane biogenesis; LPS lipid A biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homotrimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the transferase hexapeptide repeat family. LpxD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.191" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000258">
        <property type="protein sequence ID" value="KKO18547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18547">
        <property type="protein sequence ID" value="KKO18547"/>
        <property type="gene ID" value="BROFUL_02754"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3408"/>
    <dbReference type="UniPathway" id="UPA00973"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016410">
        <property type="term" value="F:N-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009245">
        <property type="term" value="P:lipid A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03352">
        <property type="entry name" value="LbH_LpxD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00523">
        <property type="entry name" value="LpxD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018357">
        <property type="entry name" value="Hexapep_transf_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007691">
        <property type="entry name" value="LpxD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020573">
        <property type="entry name" value="UDP_GlcNAc_AcTrfase_non-rep"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43378">
        <property type="entry name" value="PTHR43378"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00132">
        <property type="entry name" value="Hexapep"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04613">
        <property type="entry name" value="LpxD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01853">
        <property type="entry name" value="lipid_A_lpxD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00101">
        <property type="entry name" value="HEXAPEP_TRANSFERASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 9" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2 6" id="KW-0441">Lipid A biosynthesis</keyword>
    <keyword evidence="1 6" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="5 6" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0677">Repeat</keyword>
    <keyword evidence="3 6 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="LpxD" evidence="8">
        <location>
            <begin position="22"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="7">
        <location>
            <begin position="329"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="6">
        <location>
            <position position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00523"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF04613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18547.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="356" mass="38467" checksum="4494F5314CE2DDA9" modified="2015-11-11" version="1">MEKTLQELSEHVGGTVVGDPSVKISGVMGIDDAREGDITFISNDKYIRKIDQTKASAIIVSPKLRDTNIFLSQQTKRNLLVCNNPYLAFAKLIDLLIYKKPVYPEGVDPSARIDKTAVLGHQISVQPYVTIGKNARIGNRVVLHPCVYIGNGCIIGDDTIIYPNAVIYDETIIGKRVTIHSNTVIGSSGFGYAPDGQGYYKIPQIGSTIIEDDVDIGANTTINRAVMGETVIRKGTKIDSQVVISHNVEIGENSLIVSQVGIAGSAKIGRHVTLAGGSGVVGHVTVGDNVTVGGYSGVINDIPSNETYLGAPALPIRRMRKCYVIIEKLPEMRDLIKTLEKRIAQLEGRNETAQTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URQ3</accession>
    <name>A0A0M2URQ3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Nitrate oxidoreductase subunit alpha</fullName>
            <ecNumber evidence="6">1.7.99.4</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">nxrA_1</name>
        <name evidence="6" type="ORF">BROFUL_02528</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.7.99.4" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18748.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18748">
        <property type="protein sequence ID" value="KKO18748"/>
        <property type="gene ID" value="BROFUL_02528"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3140"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008940">
        <property type="term" value="F:nitrate reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006656">
        <property type="entry name" value="Mopterin_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006963">
        <property type="entry name" value="Mopterin_OxRdtase_4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00384">
        <property type="entry name" value="Molybdopterin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="SSF50692"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51669">
        <property type="entry name" value="4FE4S_MOW_BIS_MGD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S Mo/W bis-MGD-type" evidence="5">
        <location>
            <begin position="60"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18748.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1149" mass="131380" checksum="CA36EEBF8ECBF5CE" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URU7</accession>
    <name>A0A0M2URU7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02941</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000277">
        <property type="protein sequence ID" value="KKO18365.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18365">
        <property type="protein sequence ID" value="KKO18365"/>
        <property type="gene ID" value="BROFUL_02941"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="64"/>
            <end position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18365.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="177" mass="20120" checksum="F5E8DC6BB68486C3" modified="2015-11-11" version="1">MGNEAGKGLSVNAKTLILILLFVNVGFASKMINKYYAMKEAGYIREKTFHEQLENRVMKAFGSMEDLNKMVNDITRQKEEAEKTAASFQSQDEQLKVANKKLEEAKGTLEEEKARLQKEIWGLEDSLSLAKKTLSNKDLTIQELMNNLDILGKEKAKLKKQLEGHSKTPDEWSLPKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US05</accession>
    <name>A0A0M2US05_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02451</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000232">
        <property type="protein sequence ID" value="KKO18858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18858">
        <property type="protein sequence ID" value="KKO18858"/>
        <property type="gene ID" value="BROFUL_02451"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3047"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1220">
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014755">
        <property type="entry name" value="Cu-Rt/internalin_Ig-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006558">
        <property type="entry name" value="LamG-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032812">
        <property type="entry name" value="SbsA_Ig"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13205">
        <property type="entry name" value="Big_5"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00560">
        <property type="entry name" value="LamGL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="SSF49899"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="LamGL" evidence="2">
        <location>
            <begin position="214"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="domain" description="LamGL" evidence="2">
        <location>
            <begin position="539"/>
            <end position="665"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="888" mass="93224" checksum="1686ACBE106B3BB2" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US34</accession>
    <name>A0A0M2US34_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Cupin_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02430</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000231">
        <property type="protein sequence ID" value="KKO18883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18883">
        <property type="protein sequence ID" value="KKO18883"/>
        <property type="gene ID" value="BROFUL_02430"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013096">
        <property type="entry name" value="Cupin_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07883">
        <property type="entry name" value="Cupin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cupin_2" evidence="1">
        <location>
            <begin position="42"/>
            <end position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="119" mass="13706" checksum="53ECCB52B95DE1EA" modified="2015-11-11" version="1">MLIKDLQNCKAFVAGDNAVLRELLHPDKEEVKFRYSLAHAVVKQGETSHRHTLKHAEVYYILEGKGIMYIDHESVEVRPGQAIYIPPHAIQCIRNVGQDDLKFLCIVEPAWRQEDEKVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US75</accession>
    <name>A0A0M2US75_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02819</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000265">
        <property type="protein sequence ID" value="KKO18495.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18495">
        <property type="protein sequence ID" value="KKO18495"/>
        <property type="gene ID" value="BROFUL_02819"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3486"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001434">
        <property type="entry name" value="DUF11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01345">
        <property type="entry name" value="DUF11"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01451">
        <property type="entry name" value="B_ant_repeat"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF11" evidence="1">
        <location>
            <begin position="103"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="domain" description="DUF11" evidence="1">
        <location>
            <begin position="205"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="domain" description="DUF11" evidence="1">
        <location>
            <begin position="311"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="domain" description="DUF11" evidence="1">
        <location>
            <begin position="436"/>
            <end position="522"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18495.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="543" mass="57577" checksum="C3E7F8729EC824E7" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US80</accession>
    <name>A0A0M2US80_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">ABC transporter ATP-binding protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_02824</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Part of an ABC transporter complex. Responsible for energy coupling to the transport system.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000265">
        <property type="protein sequence ID" value="KKO18500.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18500">
        <property type="protein sequence ID" value="KKO18500"/>
        <property type="gene ID" value="BROFUL_02824"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3494"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006824">
        <property type="term" value="P:cobalt ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03225">
        <property type="entry name" value="ABC_cobalt_CbiO_domain1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015856">
        <property type="entry name" value="ABC_transpr_CbiO/EcfA_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005876">
        <property type="entry name" value="Co_trans_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01166">
        <property type="entry name" value="cbiO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="1 3 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="6"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="39"/>
            <end position="46"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU364103"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18500.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="290" mass="31925" checksum="8AB0C00241788937" modified="2015-11-11" version="1">MHMVILQVRNIQYRYHDGTAALQGVSLDIKKGEFLAILGPNGSGKTTLLKHLNGLLKPTEGEIVLEQRSFASYPPKTLFQKVGLVFQDPNDQLFAPTVWEDVAFGPMNLGLSRDEIAGRVDEALSLVDMEPYAKKTVDALSFGQRKRVCIAGVLAMKPEILVLDEPTCGLDPAGVTSIMNLLKDLNGGHGITIIMATNTVDLAPVYMDRLAIMYHGNVLLTGTPEYVFSQQEAVRHACLELPQIAQLMQILRDEDNLPMDTLPLTIGEARKFLAHKLNSNFSGITRSLIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USE6</accession>
    <name>A0A0M2USE6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Bifunctional protein FolD</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="8">Methylenetetrahydrofolate dehydrogenase</fullName>
                <ecNumber evidence="8">1.5.1.5</ecNumber>
            </recommendedName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="8">Methenyltetrahydrofolate cyclohydrolase</fullName>
                <ecNumber evidence="8">3.5.4.9</ecNumber>
            </recommendedName>
        </domain>
    </protein>
    <gene>
        <name evidence="8" type="primary">folD</name>
        <name evidence="11" type="ORF">BROFUL_03422</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + NADP(+) = 5,10-methenyltetrahydrofolate + NADPH</text>
            <dbReference type="Rhea" id="RHEA:22812"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:57455"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.5.1.5"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>5,10-methenyltetrahydrofolate + H2O = (6S)-10-formyltetrahydrofolate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23700"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57454"/>
            <dbReference type="ChEBI" id="CHEBI:57455"/>
            <dbReference type="EC" id="3.5.4.9"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="8">One-carbon metabolism; tetrahydrofolate interconversion.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the tetrahydrofolate dehydrogenase/cyclohydrolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.5.1.5" evidence="8"/>
    <dbReference type="EC" id="3.5.4.9" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000312">
        <property type="protein sequence ID" value="KKO17911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17911">
        <property type="protein sequence ID" value="KKO17911"/>
        <property type="gene ID" value="BROFUL_03422"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4203"/>
    <dbReference type="UniPathway" id="UPA00193"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004477">
        <property type="term" value="F:methenyltetrahydrofolate cyclohydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004488">
        <property type="term" value="F:methylenetetrahydrofolate dehydrogenase (NADP+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009086">
        <property type="term" value="P:methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006164">
        <property type="term" value="P:purine nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035999">
        <property type="term" value="P:tetrahydrofolate interconversion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd01080">
        <property type="entry name" value="NAD_bind_m-THF_DH_Cyclohyd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01576">
        <property type="entry name" value="THF_DHG_CYH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046346">
        <property type="entry name" value="Aminiacid_DH-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000672">
        <property type="entry name" value="THF_DH/CycHdrlase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020630">
        <property type="entry name" value="THF_DH/CycHdrlase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020867">
        <property type="entry name" value="THF_DH/CycHdrlase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020631">
        <property type="entry name" value="THF_DH/CycHdrlase_NAD-bd_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00763">
        <property type="entry name" value="THF_DHG_CYH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02882">
        <property type="entry name" value="THF_DHG_CYH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00085">
        <property type="entry name" value="THFDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53223">
        <property type="entry name" value="SSF53223"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00766">
        <property type="entry name" value="THF_DHG_CYH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00767">
        <property type="entry name" value="THF_DHG_CYH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="3 8 11" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6 8" id="KW-0486">Methionine biosynthesis</keyword>
    <keyword evidence="7 8" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="4 8" id="KW-0521">NADP</keyword>
    <keyword evidence="1 8" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="5 8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2 8" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="THF_DHG_CYH" evidence="9">
        <location>
            <begin position="6"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="THF_DHG_CYH_C" evidence="10">
        <location>
            <begin position="124"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="168"/>
            <end position="170"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="197"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="238"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO17911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="303" mass="32484" checksum="E75E46469809F0D4" modified="2015-11-11" version="1">MVAKLIKGTEIGEQILKEITSEVAQIKEKYGVVPGLVTILVGSNPASLSYVTLKIKTAHRLGFKEVQDNQPATISEKDLLALIDKYNKDNSIHGILVQLPLPKQIDEKKVINAIDPDKDVDGFHPVNVGRLMIGGDEVKFPPCTPAGIQELIIRSGIETSGAEVVVVGRSNIVGKPIANMLVQKGRGADATVTVVHTRTKHLAEHCKRADILIVAAGVPGLVKPEWIKPGACVIDVGVNRVGEKPSKDDPKKMVPLLKGDVDFEAAREIAGYITPVPGGVGPMTITMLMKNTLKSLKCKLGIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USP6</accession>
    <name>A0A0M2USP6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02202</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000220">
        <property type="protein sequence ID" value="KKO19088.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19088">
        <property type="protein sequence ID" value="KKO19088"/>
        <property type="gene ID" value="BROFUL_02202"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1490.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018988">
        <property type="entry name" value="DUF2000"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023476">
        <property type="entry name" value="Pep_tRNA_hydro_II_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09391">
        <property type="entry name" value="DUF2000"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102462">
        <property type="entry name" value="SSF102462"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19088.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="135" mass="15283" checksum="2FD90D61FBAB883B" modified="2015-11-11" version="1">MKRVAIILDKNLKTGLIGNASAILMGAVARCHPELYPSDNILDRDNQRHAGIRYNTILLKTSQVQLLRLAEKIPCEYPQVTQILFSQIGQNLNNAFEEYKTQINKRNTTETKPVGVILFGEDAEIRVLTKKYSLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USP8</accession>
    <name>A0A0M2USP8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Trigger factor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02677</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000246">
        <property type="protein sequence ID" value="KKO18620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18620">
        <property type="protein sequence ID" value="KKO18620"/>
        <property type="gene ID" value="BROFUL_02677"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008880">
        <property type="entry name" value="Trigger_fac_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037041">
        <property type="entry name" value="Trigger_fac_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027304">
        <property type="entry name" value="Trigger_fact/SurA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05698">
        <property type="entry name" value="Trigger_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109998">
        <property type="entry name" value="SSF109998"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0697">Rotamase</keyword>
    <feature type="domain" description="Trigger_C" evidence="3">
        <location>
            <begin position="12"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF05698"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="119" mass="13891" checksum="42EED1E6A3843B73" modified="2015-11-11" version="1">MSYHTDQRVYKHQLDLLNRGVPLEEIQKQTEMIKSASAESVMRELKASLIMSYIAEKEKVFITENEVEQRIASIARAYNADTMRVRKQLERQGNLSYLRSDMREAKVMNLLLKEAKIAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UST3</accession>
    <name>A0A0M2UST3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Putative exosortase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">BROFUL_02386</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000228">
        <property type="protein sequence ID" value="KKO18907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18907">
        <property type="protein sequence ID" value="KKO18907"/>
        <property type="gene ID" value="BROFUL_02386"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026392">
        <property type="entry name" value="Exo/Archaeosortase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019127">
        <property type="entry name" value="Exosortase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014263">
        <property type="entry name" value="Methanolan_biosynth_EpsI"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11984">
        <property type="entry name" value="DUF3485"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09721">
        <property type="entry name" value="Exosortase_EpsH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04178">
        <property type="entry name" value="exo_archaeo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0645">Protease</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="41"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="68"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="108"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="186"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="domain" description="DUF3485" evidence="11">
        <location>
            <begin position="216"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="137"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF11984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO18907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="406" mass="45148" checksum="0150CA86CFA056C5" modified="2015-11-11" version="1">MRHGISIATEALLKTFQYPITREGLLLSIGNNELFIGQPCSGFRSLITMVSAGLVYVFISKADFSKKVILASSIIPFALLGNLFRIIILCLITYYFGEAAGQGFFHNFSGIVMIVIITLGLMCLEYFLGKHKPNTSHIPPHGGGQREELSPAGGGAGGGKITHSWRGGVDEGDELVLNKGYRNKKVYITTALLLFTIIFCFASPGANTKKTKYVSQDILSQLEIPYKIKGWHGVDARQDWDLELEEKMNQFIEQSITREYTNTNGENIFFTMVDAGNFHNPRICANGAGFKIKDSADTEFHVALPAQAGSRILKARSFYTEKGNDGFLVIYWVCVDNNVVDWMEEKVKEIWFSLLDNSDRVSLMIRLDIPCKESSIDNALKLARGFVADFSQNIPIETATFVFGTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USU3</accession>
    <name>A0A0M2USU3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Long-chain-fatty-acid--CoA ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02375</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000227">
        <property type="protein sequence ID" value="KKO18917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18917">
        <property type="protein sequence ID" value="KKO18917"/>
        <property type="gene ID" value="BROFUL_02375"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2951"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="13"/>
            <end position="411"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="420"/>
            <end position="493"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="500" mass="55387" checksum="EEAE19FE6B97F4D3" modified="2015-11-11" version="1">MDNKLLPFWLSVNVDRNPYAIAIVDGNKRITYSEMNDSVSRLAGWLISRGVQQGDRVVLLLPNSSEFVISFFAIARIGAVAVPLNVQYKEQELAAYLKDSNPKVVIALGHLIPLIKGIILLINNKACDIVSVHNERNESFSYTQVVRENSPFSGTVNVLSENDLLCQYSSGSTGIPKRIMRTHLNLVSEASNFNSTVKLANSDKILCVVPLFHAHGLGNCMLASVYAGATLVILEGFNRQGVLKTIQDERITVFPGVPFIFSILADMPLREVMAFPFLRLCFSAGAALPRETFQKFLEKYGVPIRQLYGSTETGSVSINLNKDVSETADSVGLPMKNVEVEIFGEKGEILQPNEIGNIGIKSSAMMKGYSGLENLNKESFRDGYFFPLDLGKKDEGGNIYLRGRKTSFINTGGNKVDPSEIEILLGKHSKVKEVVVVGVKSYYGEDVIKAVVVPNDRCDEREIVEFCKGKIADFKIPRIVEFRKEIPKNPLGKVLKKYLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT19</accession>
    <name>A0A0M2UT19_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NodB homology domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02291</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO18997.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18997">
        <property type="protein sequence ID" value="KKO18997"/>
        <property type="gene ID" value="BROFUL_02291"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016810">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd10941">
        <property type="entry name" value="CE4_PuuE_HpPgdA_like_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045235">
        <property type="entry name" value="CE4_PuuE_HpPgdA-like_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022560">
        <property type="entry name" value="DUF3473"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011330">
        <property type="entry name" value="Glyco_hydro/deAcase_b/a-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002509">
        <property type="entry name" value="NODB_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11959">
        <property type="entry name" value="DUF3473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01522">
        <property type="entry name" value="Polysacc_deac_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88713">
        <property type="entry name" value="SSF88713"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51677">
        <property type="entry name" value="NODB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NodB homology" evidence="1">
        <location>
            <begin position="24"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18997.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="274" mass="32516" checksum="7BE855654F1A9CCB" modified="2015-11-11" version="1">MINGLTVDLEDWYHICGVEGYSDPQNWDTYENRIIRNTDKVLALLRTYKVRATFFVLGYIAFKEPDLIRTIKSEGHEIATHGFYHKRIFEMTEREFEEDVHKSISVISSNINEDVLGFRAPEWSIRKETPWMLKILRKLGILYDSSMVPLTRMGSRDFPLYPCKFTTDYGVIWEFPLTTTRLFWEHLPFTGGLPLRIFPYFYIVSKIQRINREGYPVIVYIHPWEFDVEQPHIDLPVSRRFMHYFNIKATCKKVEGLLQHFQFSTVKDVLGIRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UT64</accession>
    <name>A0A0M2UT64_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02260</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000223">
        <property type="protein sequence ID" value="KKO19037.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19037">
        <property type="protein sequence ID" value="KKO19037"/>
        <property type="gene ID" value="BROFUL_02260"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2310.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007712">
        <property type="entry name" value="RelE/ParE_toxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035093">
        <property type="entry name" value="RelE/ParE_toxin_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05016">
        <property type="entry name" value="ParE_toxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143011">
        <property type="entry name" value="SSF143011"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02385">
        <property type="entry name" value="RelE_StbE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-1277">Toxin-antitoxin system</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19037.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="90" mass="10461" checksum="5F0367B7B377D517" modified="2015-11-11" version="1">MSSSKFEIKVDPKASRDIKKLQYANPTVTKRIVKLIDSLSFNPYSGKHLKGKKQGCYSLRSGDYRIIYEVHSPQKVVHIIRIGHRKDIYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTD0</accession>
    <name>A0A0M2UTD0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02416</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000231">
        <property type="protein sequence ID" value="KKO18870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18870">
        <property type="protein sequence ID" value="KKO18870"/>
        <property type="gene ID" value="BROFUL_02416"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="163" mass="18762" checksum="6ECC7549AC706442" modified="2015-11-11" version="1">MVNARLFFIENKTPVTCNETLDKIPYTTWELALNEAGKRFQYFRQEYQPDKSAVLNNNINRLKKPVFGLPIGYRFSNGNKAMVKRKEEPGKGIGDRFASPVLISVHKIGKHYYPAFLFMISNPAQGMDILIDNNNGKYVHNNTVFDEFIRQQLSGITPIEFKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTE0</accession>
    <name>A0A0M2UTE0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ABC_trans_aux domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03061</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000284">
        <property type="protein sequence ID" value="KKO18251.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18251">
        <property type="protein sequence ID" value="KKO18251"/>
        <property type="gene ID" value="BROFUL_03061"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3779"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005586">
        <property type="entry name" value="ABC_trans_aux"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03886">
        <property type="entry name" value="ABC_trans_aux"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC_trans_aux" evidence="1">
        <location>
            <begin position="119"/>
            <end position="275"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03886"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18251.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="282" mass="31786" checksum="EDD4DB84A6B4421A" modified="2015-11-11" version="1">MFFSHCVGAGLKPAPTVFLFRLVRVGNFNVCCRGEAFADTGFECHLISWTANASPLRVIANKVAEGLIKHPDFIRRRFSMKINAVSYFSRFIPMGVLAVIMGCASTPSSKFYILNPIEKDEAQQESTDVLQRVTIGIGSMEIPDYLNRSQIVTRSDRSELTVDEFNRWAGSLKENISSVLAENLSLLLSTNRIFIHPWVPDDAVNYWLHVELIRLDAGPGNTVTLKTHWTILGDHGKKEYITRTSEFTEKISENSYEMIVAAMSQTFEQLSREIASEITKLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTQ8</accession>
    <name>A0A0M2UTQ8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative beta-ketoacyl (Acyl carrier protein) synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02289</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO18995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18995">
        <property type="protein sequence ID" value="KKO18995"/>
        <property type="gene ID" value="BROFUL_02289"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2852"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004315">
        <property type="term" value="F:3-oxoacyl-[acyl-carrier-protein] synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00834">
        <property type="entry name" value="KAS_I_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000794">
        <property type="entry name" value="Beta-ketoacyl_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018201">
        <property type="entry name" value="Ketoacyl_synth_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014031">
        <property type="entry name" value="Ketoacyl_synth_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014030">
        <property type="entry name" value="Ketoacyl_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020841">
        <property type="entry name" value="PKS_Beta-ketoAc_synthase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11712">
        <property type="entry name" value="PTHR11712"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00109">
        <property type="entry name" value="ketoacyl-synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02801">
        <property type="entry name" value="Ketoacyl-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00825">
        <property type="entry name" value="PKS_KS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00606">
        <property type="entry name" value="B_KETOACYL_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PKS_KS" evidence="3">
        <location>
            <begin position="5"/>
            <end position="401"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18995.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="403" mass="43462" checksum="471B1B3C462ADD2E" modified="2015-11-11" version="1">MNRRVVVTGIGMITAHGIGIKANWTKIKSGMSSIQEIASFDSSKYRGKTGGEAREFSTATLNNLKNKRLDRASHLLIHTTREALADANIIDAVKNIPVLLSVGTTLGGMISGEIFHKEVIKRGLNRAKVSRVFDYLAHYQAIHLFKELELKGDFFVFSNACASGTDAIGHAFNSIRHGDYDVAICGGYDTMSEFSFAGFNSLMAITPTLCMPFDKKREGLVLGEGAGVLILEELEHAHKRNARILGEIAGYGASSDACHMTSPEPSGKGAAIAIKRALKDAGHPEIDYINAHGTGTKYNDIMETNAVVIAFESKAKEIPVSSIKPMIGHLLGGAGAVEAIVSLLSILYKTLIPNINYTTPDPECALNIVRESMGCNIKTVLSNSFGFGGSNAAIIIREYVWRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTV8</accession>
    <name>A0A0M2UTV8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01794</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000187">
        <property type="protein sequence ID" value="KKO19498.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19498">
        <property type="protein sequence ID" value="KKO19498"/>
        <property type="gene ID" value="BROFUL_01794"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644076" evidence="1">
        <location>
            <begin position="27"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19498.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="165" mass="19381" checksum="E0F40EED8F353765" modified="2015-11-11" version="1">MNTKWKNKLFCAGFMTVMAWTVTVSAQDKPADNMQILVDKVHADKKLIIADNMQLTEGEAKGFWPVYSQYQDELFLIRARTAKLINDYRNAYNNNAMTNDIARTLVDEYMNIETLTLKLRKKYLPKFREVLPEAKVMRYYQIENKIQAALYYEFATNIPLTKMDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU31</accession>
    <name>A0A0M2UU31_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01992</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19332.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19332">
        <property type="protein sequence ID" value="KKO19332"/>
        <property type="gene ID" value="BROFUL_01992"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19332.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="236" mass="27374" checksum="133EC971E7AB801B" modified="2015-11-11" version="1">MDGKTFARIRDWVEPAHPAVVKLYDDLIDIYTRIRERYQKEIDNAFDRISRQIGFVVTTTVPVVFEIGDKGEFKRMGMGAEHLKDTLFDKELSKVFGPHPDPWKVAAGKYNLYLVWFDALHLKLRTDWMEPAHFFRERFAADIASGPMAGISSRALKQGWEWQEPAHWFDPGIAIAVEELVLIEAIDRVYPELRLVDRVAFVRDALRKRVRPEVMEPAHFHRVEKGICPEGTEGNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU72</accession>
    <name>A0A0M2UU72_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02753</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000258">
        <property type="protein sequence ID" value="KKO18546.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18546">
        <property type="protein sequence ID" value="KKO18546"/>
        <property type="gene ID" value="BROFUL_02753"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.140.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010415">
        <property type="entry name" value="LpxI_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043167">
        <property type="entry name" value="LpxI_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041255">
        <property type="entry name" value="LpxI_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06230">
        <property type="entry name" value="LpxI_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17930">
        <property type="entry name" value="LpxI_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LpxI_N" evidence="2">
        <location>
            <begin position="3"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="domain" description="LpxI_C" evidence="1">
        <location>
            <begin position="142"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18546.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="272" mass="30104" checksum="C55BF8E8C48AE827" modified="2015-11-11" version="1">MDKIGLIAGNGRFPILFAKGARDNNVPVIAVGIEGETSPEIEQYVEKLYWVGIAQIGKLIKVFKQEQVSKAVMAGGLKKTNMFSSWRNLRFLPDLRTINLWYRHVKRRDDHSLLGAVADELLKDGIELQNSTLYVPQLLAQKGTLTRRQPTETEMEDIRFGWPIAKEIARLGIGQCIVVKEKVVLSVEALEGTDEAIRRGGNLGKDGIVVIKVSKHDFDPRFDIPTVGLETIKSLQESSASALALEAEKTLILDIEETIKAADDAKIAMVGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU95</accession>
    <name>A0A0M2UU95_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01648</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000173">
        <property type="protein sequence ID" value="KKO19613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19613">
        <property type="protein sequence ID" value="KKO19613"/>
        <property type="gene ID" value="BROFUL_01648"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013424">
        <property type="entry name" value="PEP_exosort_dom"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02595">
        <property type="entry name" value="PEP_exosort"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644009" evidence="2">
        <location>
            <begin position="29"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="42"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="82" mass="8760" checksum="DCA2C70BA8615044" modified="2015-11-11" version="1">MRKRLLTFGGCLSAIVLSTMIVVNSADANGRKNKPPKPVPEPISYALFAAGGSALVGLRYLRSKWKSKELAGQQNDAKDGIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU99</accession>
    <name>A0A0M2UU99_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03258</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000298">
        <property type="protein sequence ID" value="KKO18059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18059">
        <property type="protein sequence ID" value="KKO18059"/>
        <property type="gene ID" value="BROFUL_03258"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="34" mass="3997" checksum="401ED2565FEEB0C2" modified="2015-11-11" version="1">MHTAPSLKTEKYQKSIESQDMVLDMVMDKNGKRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUB6</accession>
    <name>A0A0M2UUB6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02099</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000210">
        <property type="protein sequence ID" value="KKO19190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19190">
        <property type="protein sequence ID" value="KKO19190"/>
        <property type="gene ID" value="BROFUL_02099"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003477">
        <property type="entry name" value="PemK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011067">
        <property type="entry name" value="Plasmid_toxin/cell-grow_inhib"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02452">
        <property type="entry name" value="PemK_toxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="121" mass="13380" checksum="9921163829219354" modified="2015-11-11" version="1">MITFNKGDVILIPFPFTDLSATKQRPAVIISSDQFNNNHKDVIVMAITSQVPSQIPEDEYLLSSTDLKTSGLPKKSIIKLGKVVTINQSLIIKKLGKIPNQTVTSILNQFNLSIVRHQPVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUD5</accession>
    <name>A0A0M2UUD5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">ATP-dependent zinc metalloprotease FtsH</fullName>
            <ecNumber evidence="5">3.4.24.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">ftsH</name>
        <name evidence="8" type="ORF">BROFUL_02093</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="5">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homohexamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
            <orientation evidence="5">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the AAA ATPase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">In the C-terminal section; belongs to the peptidase M41 family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">In the central section; belongs to the AAA ATPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.24.-" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000209">
        <property type="protein sequence ID" value="KKO19215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19215">
        <property type="protein sequence ID" value="KKO19215"/>
        <property type="gene ID" value="BROFUL_02093"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2612"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030163">
        <property type="term" value="P:protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.760">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01458">
        <property type="entry name" value="FtsH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041569">
        <property type="entry name" value="AAA_lid_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003960">
        <property type="entry name" value="ATPase_AAA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005936">
        <property type="entry name" value="FtsH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000642">
        <property type="entry name" value="Peptidase_M41"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037219">
        <property type="entry name" value="Peptidase_M41-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17862">
        <property type="entry name" value="AAA_lid_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01434">
        <property type="entry name" value="Peptidase_M41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140990">
        <property type="entry name" value="SSF140990"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01241">
        <property type="entry name" value="FtsH_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00674">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 5 8" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="5 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 5 8" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="7"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="107"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="domain" description="AAA" evidence="7">
        <location>
            <begin position="187"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="active site" evidence="5">
        <location>
            <position position="418"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="195"/>
            <end position="202"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="417"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="421"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="494"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="612" mass="68505" checksum="9B519CDB9C1F5417" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUF5</accession>
    <name>A0A0M2UUF5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Preprotein translocase subunit SecA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01811</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000189">
        <property type="protein sequence ID" value="KKO19472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19472">
        <property type="protein sequence ID" value="KKO19472"/>
        <property type="gene ID" value="BROFUL_01811"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004027">
        <property type="entry name" value="SEC_C_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036266">
        <property type="entry name" value="SecA_Wing/Scaffold_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02810">
        <property type="entry name" value="SEC-C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81886">
        <property type="entry name" value="SSF81886"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="47"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="104" mass="11623" checksum="08FF2374B0065563" modified="2015-11-11" version="1">MFEGMNLSIRDEVTDLIFKLQLGKEAERKEVWHPDQYVHQEVSGLKTMQESPVPAGVPQNTAADAEEQAERKIEPLKVGIKIGRNQPCPCGSGKKFKQCCGRVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUG1</accession>
    <name>A0A0M2UUG1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02673</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the YggT family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000246">
        <property type="protein sequence ID" value="KKO18616.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18616">
        <property type="protein sequence ID" value="KKO18616"/>
        <property type="gene ID" value="BROFUL_02673"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003425">
        <property type="entry name" value="CCB3/YggT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33219">
        <property type="entry name" value="PTHR33219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02325">
        <property type="entry name" value="YGGT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18616.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="83" mass="9311" checksum="904046DE16D72BAC" modified="2015-11-11" version="1">MGTLLGKLISLYEIALLIRIVLSWVPHNPYNQAIQFLYKITDPVLNPVRRLIPPFRGIDFSPVIVFIGLGVVKRMVGGCFSSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUI4</accession>
    <name>A0A0M2UUI4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phosphoserine phosphatase 1</fullName>
            <ecNumber evidence="1">3.1.3.3</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">pspA</name>
        <name evidence="1" type="ORF">BROFUL_01793</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.3" evidence="1"/>
    <dbReference type="EMBL" id="LAQJ01000187">
        <property type="protein sequence ID" value="KKO19497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19497">
        <property type="protein sequence ID" value="KKO19497"/>
        <property type="gene ID" value="BROFUL_01793"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2223"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036424">
        <property type="term" value="F:L-phosphoserine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd07067">
        <property type="entry name" value="HP_PGM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013078">
        <property type="entry name" value="His_Pase_superF_clade-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00300">
        <property type="entry name" value="His_Phos_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00855">
        <property type="entry name" value="PGAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="SSF53254"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="199" mass="22389" checksum="33A7D96E473CE3C8" modified="2015-11-11" version="1">MSEELPVIYLARHGDTAWSLTGQYTGLTDLPLTERGERNARRLMERLKDITFARVFTSPLQRAVRTCELSGFGAVAEVDRDLVEWDYGVYEGRLSSEVHAQHPDWQLFRDGCPGGESPAQVTARADRVIGRIRKVHGNVLVFSSGHFIRVLTVRWLGLEPSVSCSYFMLSTASLSALGYKHDLTHPVIRLWNDDHHIGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUI5</accession>
    <name>A0A0M2UUI5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">GTP cyclohydrolase 1</fullName>
            <ecNumber evidence="5">3.5.4.16</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">GTP cyclohydrolase I</fullName>
            <shortName evidence="5">GTP-CH-I</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">folE</name>
        <name evidence="7" type="ORF">BROFUL_02013</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>GTP + H2O = 7,8-dihydroneopterin 3'-triphosphate + formate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17473"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:58462"/>
            <dbReference type="EC" id="3.5.4.16"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 5">Cofactor biosynthesis; 7,8-dihydroneopterin triphosphate biosynthesis; 7,8-dihydroneopterin triphosphate from GTP: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homopolymer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the GTP cyclohydrolase I family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.16" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000204">
        <property type="protein sequence ID" value="KKO19275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19275">
        <property type="protein sequence ID" value="KKO19275"/>
        <property type="gene ID" value="BROFUL_02013"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2506"/>
    <dbReference type="UniPathway" id="UPA00848">
        <property type="reaction ID" value="UER00151"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003934">
        <property type="term" value="F:GTP cyclohydrolase I activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035998">
        <property type="term" value="P:7,8-dihydroneopterin 3'-triphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006730">
        <property type="term" value="P:one-carbon metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046654">
        <property type="term" value="P:tetrahydrofolate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.286.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00223">
        <property type="entry name" value="FolE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043133">
        <property type="entry name" value="GTP-CH-I_C/QueF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043134">
        <property type="entry name" value="GTP-CH-I_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001474">
        <property type="entry name" value="GTP_CycHdrlase_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018234">
        <property type="entry name" value="GTP_CycHdrlase_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020602">
        <property type="entry name" value="GTP_CycHdrlase_I_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11109">
        <property type="entry name" value="PTHR11109"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01227">
        <property type="entry name" value="GTP_cyclohydroI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00063">
        <property type="entry name" value="folE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00859">
        <property type="entry name" value="GTP_CYCLOHYDROL_1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00860">
        <property type="entry name" value="GTP_CYCLOHYDROL_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="4 5 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3 5" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="GTP_cyclohydroI" evidence="6">
        <location>
            <begin position="7"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="76"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="79"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="148"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00223"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="187" mass="20947" checksum="36ADB47C1729F9FE" modified="2015-11-11" version="1">MIDKKKIRESIRLFIEGIGDDPNREGLIETPERVADMCEEIFAGIGQDSHTEIKVLKSEKYDEIVLIKDIPFYSICEHHLLPFSGVAHVAYIPQGDRVTGISKLARVVEIEAKRLQVQERLTTDIAESIMKALRPKGVLAIIEAEHLCMTMRGIKKPGTRVKTSVVRGIFRENSATRAEALALIKGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUK3</accession>
    <name>A0A0M2UUK3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Glutamate--tRNA ligase</fullName>
            <ecNumber evidence="9">6.1.1.17</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Glutamyl-tRNA synthetase</fullName>
            <shortName evidence="9">GluRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9 13" type="primary">gltX</name>
        <name evidence="13" type="ORF">BROFUL_01960</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>ATP + L-glutamate + tRNA(Glu) = AMP + diphosphate + L-glutamyl-tRNA(Glu)</text>
            <dbReference type="Rhea" id="RHEA:23540"/>
            <dbReference type="Rhea" id="RHEA-COMP:9663"/>
            <dbReference type="Rhea" id="RHEA-COMP:9680"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78520"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.17"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="9">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.17" evidence="9"/>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19300.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19300">
        <property type="protein sequence ID" value="KKO19300"/>
        <property type="gene ID" value="BROFUL_01960"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2441"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004818">
        <property type="term" value="F:glutamate-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006424">
        <property type="term" value="P:glutamyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00808">
        <property type="entry name" value="GluRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.350">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00022">
        <property type="entry name" value="Glu_tRNA_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045462">
        <property type="entry name" value="aa-tRNA-synth_I_cd-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020751">
        <property type="entry name" value="aa-tRNA-synth_I_codon-bd_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008925">
        <property type="entry name" value="aa_tRNA-synth_I_cd-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004527">
        <property type="entry name" value="Glu-tRNA-ligase_bac/mito"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020752">
        <property type="entry name" value="Glu-tRNA-synth_I_codon-bd_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000924">
        <property type="entry name" value="Glu/Gln-tRNA-synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020058">
        <property type="entry name" value="Glu/Gln-tRNA-synth_Ib_cat-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020061">
        <property type="entry name" value="Glu_tRNA_lig_a-bdl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033910">
        <property type="entry name" value="GluRS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19269">
        <property type="entry name" value="Anticodon_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00749">
        <property type="entry name" value="tRNA-synt_1c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00987">
        <property type="entry name" value="TRNASYNTHGLU"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48163">
        <property type="entry name" value="SSF48163"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00464">
        <property type="entry name" value="gltX_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9 10" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="6 9 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 9 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 9 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 9 10" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="tRNA-synt_1c" evidence="11">
        <location>
            <begin position="111"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="domain" description="Anticodon_2" evidence="12">
        <location>
            <begin position="297"/>
            <end position="441"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="9">
        <location>
            <begin position="20"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="9">
        <location>
            <begin position="214"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="217"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001818"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00022"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU363037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF19269"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO19300.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="454" mass="51687" checksum="C05636F1D714141E" modified="2015-11-11" version="1">MEFLVKEEGLSSHVKVRFAPSPTGYLHIGGARTALFNWLFARHSKGVFLLRIEDTDQQRSTEEATQAILDSMKWLGLDWDEGPYFQSQRLPSYRQYAEKLVAEGKAFYDTDAEGRKAIRFQMQDGITEINDLIHGTITFDTSLIEDFVILKADGFPTYNFACVVDDAEMGITHIIRGDDHISNTPKQIALYRAFGFKMPEFAHIPMILGEDGSRLSKRHGATSVTEYRDKGYLPHALVNFLALLGWSPGNDQEIISIPEMIEKFTLKRANKTSAQFNNTKLDWMNGQYIKNTPTERLAPEVRKFFEKSGVDMTKIADEWLFRLVELHHERFKTFQDLLNQTRFFFADAIEYDQAAVNKFLRKEGVGGLLKEVHSAISQSDVFDKKTLEDSLRSLTEKLGVGFSKLAQPMRVAVTGRSVSAGIFETMELLGREKTAKRLDYAVKSLCETPETVRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUN9</accession>
    <name>A0A0M2UUN9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Cobalamin biosynthesis protein CobD</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">cobD</name>
        <name evidence="11" type="ORF">BROFUL_02585</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 10">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 10">Cell membrane</location>
            <topology evidence="2 10">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 10">Belongs to the CobD/CbiB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000239">
        <property type="protein sequence ID" value="KKO18706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18706">
        <property type="protein sequence ID" value="KKO18706"/>
        <property type="gene ID" value="BROFUL_02585"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3211"/>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015420">
        <property type="term" value="F:ABC-type vitamin B12 transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048472">
        <property type="term" value="F:threonine-phosphate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00024">
        <property type="entry name" value="CobD_CbiB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004485">
        <property type="entry name" value="Cobalamin_biosynth_CobD/CbiB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34308">
        <property type="entry name" value="PTHR34308"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03186">
        <property type="entry name" value="CobD_Cbib"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00380">
        <property type="entry name" value="cobD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 10" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="57"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="299"/>
            <end position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00006263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO18706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="323" mass="35320" checksum="F88EAE17ACF39475" modified="2015-11-11" version="1">MIAPLYADLVQVAVAFLIDLAIGDPQWSYHPVRLIGRFIERAEFVLRKCILPDRINGILLTVVVVMGTYLAIFAILLLAKQCRYPCETVIGAICIYFAISVKSLAGEARKIMGCLRKNDVIMARQTLSMIVGRDTAHLTEEQIVRACVETIAESSVDGVVSPLFYSFLWGPAGAMAYRAINTLDSMVGYKNEKYIRFGWASARFDDAANYIPARMSAVLIPAASFLCGYGFIRSLRIAFRDGRKHESPNSGIPEAAMAGALGVQLGGPSTYQGEVVDKPLIGDAHNHLTVNSIDHAVKILYITAVLFLISGIGVILCLKWLVC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUQ6</accession>
    <name>A0A0M2UUQ6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyltransferase fused to TPR-repeat domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">waaE_3</name>
        <name evidence="3" type="ORF">BROFUL_01499</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000155">
        <property type="protein sequence ID" value="KKO19773.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19773">
        <property type="protein sequence ID" value="KKO19773"/>
        <property type="gene ID" value="BROFUL_01499"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1854"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013105">
        <property type="entry name" value="TPR_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07719">
        <property type="entry name" value="TPR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="10"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="284"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="335"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="403"/>
            <end position="436"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19773.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="470" mass="53861" checksum="B90A0AD29767A629" modified="2015-11-11" version="1">MKKSQHQKISACLIVKNEEELLPNCLSSIKNTVDEIIIVDTGSTDSTVTIAKDFGAKVYHHPWNDSFSEARNHCLKYASGNWIFQIDADEELEQADIMKLQKAINNVKCNAIAVAIHSAIQDNYHTFYNIRIFRRGKGFYQGIIHEQLIIDGDRLSADIRLYHHGYNLDPHKMKEKWQKTTRLLQKQLEQNKYDSFAWFNLIRNYRTQELFNDGIIAGEKALTLFTPDPGTIHPEMGITMHHYAMIVYETANCYLHLASASRAKELCYKALSKLEAAGNTPENIDILFTLACAYLKEGSYQKAVQYFHRFLSLREWHLNNVGTNTFMTDTLGYDYAAHNGIGYCLGNLGQWGIAIDHLEKAIALNPRYRNAYYNLALCFENTGDINNAVNTLLRTVSEDIADDAVWLHLGELYIQQNTYEKALPYFEKYLKNHPADKNVLLKIVWCYEKLGHLEAALIGYRSVEALKEPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUQ9</accession>
    <name>A0A0M2UUQ9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02558</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000238">
        <property type="protein sequence ID" value="KKO18726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18726">
        <property type="protein sequence ID" value="KKO18726"/>
        <property type="gene ID" value="BROFUL_02558"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="138" mass="16032" checksum="F99E9CDD0E604B63" modified="2015-11-11" version="1">MKNKFWIGLVLSITVAFTGVAYQKFLKSPRCAFDGSAVPPIYEVDIVLKDRSVKKFCSIYCAVQWFKKNNQMIDHVIVTDEIRGKKIDSFMAYFVESELVTNETNDNRIHVFQQRQDALTHEEKFHGKITDDPFSMDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUR6</accession>
    <name>A0A0M2UUR6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01510</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000155">
        <property type="protein sequence ID" value="KKO19783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19783">
        <property type="protein sequence ID" value="KKO19783"/>
        <property type="gene ID" value="BROFUL_01510"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="87" mass="10473" checksum="094C03C0F68E42ED" modified="2015-11-11" version="1">MKDIIKTAIKKVTLELVYQVVDERTEEIISEIKEIKKRQEDDFRYLIQKMDSDIGQMRSEVRSELSQLNQRIDTIIQMLMSIRQDRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV82</accession>
    <name>A0A0M2UV82_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02380</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000228">
        <property type="protein sequence ID" value="KKO18901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18901">
        <property type="protein sequence ID" value="KKO18901"/>
        <property type="gene ID" value="BROFUL_02380"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18901.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="224" mass="25068" checksum="DB8D69FE6D6CE654" modified="2015-11-11" version="1">MTKFAFKKGFCGLALALVVVLVQGQISFAGEMGEIQKSMSIRVIHDEGNFGLARVRFSGEAGRELKRLMNSRQSAAESEQSVMEPSVMGSGNPVDVYAAYTSFQANTDPLQNAYWPWVYSDQAYLYVAFKVSAATRVSIRWSLYKDDANQAGYNWGFHSRSNWNFDLLTLDPDEWYFAWWHPSGADTPLTDGYYRLSTRVSIPSGGGRGNSRCTFQVVPLPLPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVA3</accession>
    <name>A0A0M2UVA3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02313</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000226">
        <property type="protein sequence ID" value="KKO18921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18921">
        <property type="protein sequence ID" value="KKO18921"/>
        <property type="gene ID" value="BROFUL_02313"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2310.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035093">
        <property type="entry name" value="RelE/ParE_toxin_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="56"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="97"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="139" mass="16079" checksum="043CB99563AB12FD" modified="2015-11-11" version="1">MQIRLLEIAQIEIDESGRLGDEFLVESLHAFDRIKNFPHAWHSFTSDTRRCQLRRFPYGIIYQILDTEILVVAIANLHRNPDYWKDGTMLALHRFDGFDLAGGILPYILFIFAADYRLSNLSRLAGLTLLEIFTPSSFC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVG2</accession>
    <name>A0A0M2UVG2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cytochrome c551 peroxidase</fullName>
            <ecNumber evidence="7">1.11.1.5</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">ccpA</name>
        <name evidence="7" type="ORF">BROFUL_01458</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.11.1.5" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000150">
        <property type="protein sequence ID" value="KKO19817.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19817">
        <property type="protein sequence ID" value="KKO19817"/>
        <property type="gene ID" value="BROFUL_01458"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1801"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004130">
        <property type="term" value="F:cytochrome-c peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004852">
        <property type="entry name" value="Di-haem_cyt_c_peroxidsae"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03150">
        <property type="entry name" value="CCP_MauG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0349">Heme</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644208" evidence="5">
        <location>
            <begin position="26"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="6">
        <location>
            <begin position="65"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19817.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="265" mass="29475" checksum="431477CCB68A2730" modified="2015-11-11" version="1">MKKMKFALISFVFALIVIDPIVATADEPPSHIGYGRGGRMQGGSVSERSKEPIQPVPISFDYDTAKVELGKKLFFEPRLSKSGWITCNSCHNLSTGGVDNLPTSIGHKWLFGPINSPTVLNAKFNLAQFWDGRAKDLKEQAKGPIANPMEMASNHELAVEVLQSIPAYVQWFKEVYGGDKITIDNVVDAIAAFEETLTTPNSRFDWWLKEYDDKITDEEKEGYDLFKNKGCIICHNGFGVGGTAFQKFGNAKPYDKDTRPLADIM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVH2</accession>
    <name>A0A0M2UVH2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01719</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000177">
        <property type="protein sequence ID" value="KKO19575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19575">
        <property type="protein sequence ID" value="KKO19575"/>
        <property type="gene ID" value="BROFUL_01719"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="23" mass="2752" checksum="1B624FDF7697B3C0" modified="2015-11-11" version="1" fragment="single">MPLFMSERLLRFTRNDNVPCAIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVJ2</accession>
    <name>A0A0M2UVJ2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01204</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000128">
        <property type="protein sequence ID" value="KKO20078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20078">
        <property type="protein sequence ID" value="KKO20078"/>
        <property type="gene ID" value="BROFUL_01204"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1492"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022853">
        <property type="entry name" value="FloA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12127">
        <property type="entry name" value="YdfA_immunity"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="343" mass="37572" checksum="111D57FA2A034366" modified="2015-11-11" version="1">MPLLTMCISTSIFLYVLLFFFIAACAGILYKYGGLYIKALLSDAHVSFAQMVSMTFRNVDARSLVNYRIMAKKAGIDIASSALEAHHLAGGKVNDVIRSLIAARKANIHLSFDHACAIDLAGRDVFDAIKTCINPKVIDCPDPSKGCVTLDGVTKDGIQVKLKVRITLRTDIERIVGGATEETIIARVGEGMLATVSTFETYKKALENPDLLSKLVMEKKCDNDTTFQILSVNVVSITIGEHISAKLQADQAETDKRTVQADAVKRRSMALAREQEMKVLSEENRAKILASEAEVPRAIAQAFREGNLGVMDYYHLKNIQADTEMRALSALKPVIPPPPITKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVT1</accession>
    <name>A0A0M2UVT1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01122</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20163.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20163">
        <property type="protein sequence ID" value="KKO20163"/>
        <property type="gene ID" value="BROFUL_01122"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018673">
        <property type="entry name" value="DUF2141"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09912">
        <property type="entry name" value="DUF2141"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20163.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="166" mass="18819" checksum="CC4D01304077BFA0" modified="2015-11-11" version="1">MNSISLKRKEAGRHGKSVPFLAGLLSAIFSFHLYAGDVIVTVDRFTDIGNKAPVRFSICDSNECHRKKDKGYVDIEAHLIEQRDHVRRYKITIAAPGEYSLSAYHDLNNNGMLERSGILGIPKEPIGFSRLDLDKIQRHPKWDEVKFTVSKQETSVNVHLVNRFGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVU9</accession>
    <name>A0A0M2UVU9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01588</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000168">
        <property type="protein sequence ID" value="KKO19700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19700">
        <property type="protein sequence ID" value="KKO19700"/>
        <property type="gene ID" value="BROFUL_01588"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="146" mass="16392" checksum="05AF53CAFE56C56E" modified="2015-11-11" version="1">MMKYYKNSVGINLIFIACCFSATKLSACLADEKRNIEPMVHGVMIVSLDAPMMASIGEKIPVVVVIGNERMTKETTILTVTCSTMKQIIGREAETLEGLSSKKFTYTWNTKGLKEDAYTIRAEIEKIPRETYIDDNVKEAKIYLVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVV4</accession>
    <name>A0A0M2UVV4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02666</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000245">
        <property type="protein sequence ID" value="KKO18629.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18629">
        <property type="protein sequence ID" value="KKO18629"/>
        <property type="gene ID" value="BROFUL_02666"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043504">
        <property type="entry name" value="Peptidase_S1_PA_chymotrypsin"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="SSF50494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18629.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="150" mass="16755" checksum="3188BE5E2B84D829" modified="2015-11-11" version="1">MSRSERENFIVRILDQNNKPVGAGFLISPRHVLTCSHVISKLDEEITLDFPLLSTQKYKACIKVQFSPKESACPDDIEDIAVLEFLLNQELPNDVSFATVSDIRDLYDHPVNVCGFPEGNDGGSWVDGKLRGGVRLRAGYSLIRRCMQSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UW96</accession>
    <name>A0A0M2UW96_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Maltose transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">malG</name>
        <name evidence="6" type="ORF">BROFUL_02520</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000236">
        <property type="protein sequence ID" value="KKO18779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18779">
        <property type="protein sequence ID" value="KKO18779"/>
        <property type="gene ID" value="BROFUL_02520"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3131"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="7"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="64"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="100"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="130"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="233"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="65"/>
            <end position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="271" mass="30193" checksum="335028565B11B24F" modified="2015-11-11" version="1">MVRKSGFFLLLTIAILWSISPFLWILLTSIKPASQIMQLPPVFPGAYTMNSYKNVLFESHFPKYLLNSFMVSCATVSITVPLSLLAAYGISRFSFRGKTFILFMIIALFTLPSISLVAALYKLFDALGWINLPVSLIGTYSALNFPLAFFLLIKYIDKIPTEMDHAALIDGCTYFQTFWYIISPLSSPGIISAAILVFIFCWNEFLFALTFTLDETTRMASVGIALFQGTYEIPWGDIAAASVVVTVPLLVVLLFFQKYIVQGLTSGAVKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWM1</accession>
    <name>A0A0M2UWM1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nucleotidyltransferase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01305</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000137">
        <property type="protein sequence ID" value="KKO19975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19975">
        <property type="protein sequence ID" value="KKO19975"/>
        <property type="gene ID" value="BROFUL_01305"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002934">
        <property type="entry name" value="Polymerase_NTP_transf_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01909">
        <property type="entry name" value="NTP_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NTP_transf_2" evidence="1">
        <location>
            <begin position="26"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="121" mass="14113" checksum="BF8C74C12413F362" modified="2015-11-11" version="1">MGKIKPVKKYKIQNKTKRNLADKIAREFANSVRKKLENHVKEIILFGSRARGDFTEGSDYDILIVVDKRDRQIQEIILDESAEIMDKYDALIGYIVCDEDEWEKKKKFPIGLNILKEGIEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWN0</accession>
    <name>A0A0M2UWN0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02372</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000227">
        <property type="protein sequence ID" value="KKO18914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18914">
        <property type="protein sequence ID" value="KKO18914"/>
        <property type="gene ID" value="BROFUL_02372"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006158">
        <property type="entry name" value="Cobalamin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034466">
        <property type="entry name" value="Methyltransferase_Class_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02310">
        <property type="entry name" value="B12-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01123">
        <property type="entry name" value="methyltransferase_(Class_B)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="B12-binding" evidence="2">
        <location>
            <begin position="1"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="3">
        <location>
            <begin position="187"/>
            <end position="404"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="466" mass="52938" checksum="476EB612B113A0E4" modified="2015-11-11" version="1">MKVLLIAVNQEKHPYPVQPIGAIYIAAALKEKGHQVRFLDLNFVDDYKREIPLTLNEFKPDIVGISMRNIDNCFYPNMEFYLPKIKEFVDCCKANTTARLIVGGSGFSVMPKEILEYLELDLGITGNGEEVICNLVAKIEDGADIEKIEGIIYRKNGHYFKNPVTYTSYGLDGLEPARFLLALKTYFEEGSVAPIQSKRGCEFDCIYCTYPLIEGEKVRLRNPKMVVDEIEKLKRDFGIDYVFFIDNVFNYPINHAVSICKEIIDRKIKIGWTGFFNPAFMTKELVSLLKESGCSGVEFGTEAACDKMLKNLGKSFNVNTLIKSHKLCAEVGVKTCHYLLLGGPGETIETIEESLALMRELKPTAVIVATGIRIYPGTPLEKIAIEEGYDLTNLLIPHFYISKELGDNVEETIQNFAKKYPEFIFEGVHKKTSKEILRMMRRMGFKGPSWEFAPVVNRLFKRRESD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWN8</accession>
    <name>A0A0M2UWN8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00793</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000101">
        <property type="protein sequence ID" value="KKO20478.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20478">
        <property type="protein sequence ID" value="KKO20478"/>
        <property type="gene ID" value="BROFUL_00793"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1006"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006158">
        <property type="entry name" value="Cobalamin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036724">
        <property type="entry name" value="Cobalamin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034466">
        <property type="entry name" value="Methyltransferase_Class_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01123">
        <property type="entry name" value="methyltransferase_(Class_B)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52242">
        <property type="entry name" value="SSF52242"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="B12-binding" evidence="2">
        <location>
            <begin position="160"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="3">
        <location>
            <begin position="312"/>
            <end position="530"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20478.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="585" mass="66766" checksum="7884A392F1BBD5D7" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWP8</accession>
    <name>A0A0M2UWP8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01271</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20000">
        <property type="protein sequence ID" value="KKO20000"/>
        <property type="gene ID" value="BROFUL_01271"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005134">
        <property type="entry name" value="UPF0114"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03350">
        <property type="entry name" value="UPF0114"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF026509">
        <property type="entry name" value="UCP026509"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="65"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="118"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="143"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="179" mass="20074" checksum="9CFCAAF7476B55D1" modified="2015-11-11" version="1">MKNRDFLTTVNKGFIDAGRYFVAVASILTILAAGFLIFAGIWEFLNGVPTMIALLQKPSTKCLELSVHFISAIDLFMVAVVMFVMGIGLFELFVDRDQSIDYPHWLRIQDLNDLKEKLIAAAVVVIVITFLKHIVMWENPLETLYFGGSIALVIVAITFFSKLVVSDELRKKKGGETKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWQ3</accession>
    <name>A0A0M2UWQ3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reelin domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01276</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20005.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20005">
        <property type="protein sequence ID" value="KKO20005"/>
        <property type="gene ID" value="BROFUL_01276"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.4060">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002861">
        <property type="entry name" value="Reeler_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042307">
        <property type="entry name" value="Reeler_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02014">
        <property type="entry name" value="Reeler"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reelin" evidence="1">
        <location>
            <begin position="88"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20005.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="221" mass="24663" checksum="8CC82240095A0F3C" modified="2015-11-11" version="1">MRNGLFLGQGGKYKKFCILILSLVVSGMFCNASNAHSDGAPLACLGSGFDRYSFRFAAPGTFTCGNLGCHYQYPVNSGKGKLMLFVVDKCEPNEIVDILVSFKQTTKEFHGFQVTAHDNYYGNRLVGTFINVGNDEDTQVEAGGRFATHTKKGTNQKFWHVKWQAPPEDFLVANPVRFYAMGVEANNDGTAMGDYIYKATRLITVTRKKVKKEQVRIMKKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWV8</accession>
    <name>A0A0M2UWV8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02278</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000225">
        <property type="protein sequence ID" value="KKO18984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18984">
        <property type="protein sequence ID" value="KKO18984"/>
        <property type="gene ID" value="BROFUL_02278"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="276" mass="31229" checksum="D9473049765D591C" modified="2015-11-11" version="1">MKYVNCNLCNADDTFLVTTQNGYKIVRCKSCGLVYVNPRPDNEALKHLYDEYHQRNGKDVNDWAKLMGKNFKEILLFLNKALPDKGKLLDIGCGYGHFIEIMKQQGWSVYGIDLSPKVLLYAKEKGLDVLETSIDDVSVPDEYFDVVTAFYVLEHVTNPLHVLKNMYKMLKPCGILVLRVPHTTPIIRILSFFRIKNNLYDTPYHLFDYSPEIIIQLLKKAGFSSVKVTPGSPTIPANVFEMIVSVVSGSLSKFLFAISAGKFLLPGISKTIFAFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWW4</accession>
    <name>A0A0M2UWW4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Phosphatidylserine decarboxylase proenzyme</fullName>
            <ecNumber evidence="5">4.1.1.65</ecNumber>
        </recommendedName>
        <component>
            <recommendedName>
                <fullName evidence="5">Phosphatidylserine decarboxylase alpha chain</fullName>
            </recommendedName>
        </component>
        <component>
            <recommendedName>
                <fullName evidence="5">Phosphatidylserine decarboxylase beta chain</fullName>
            </recommendedName>
        </component>
    </protein>
    <gene>
        <name evidence="5" type="primary">psd</name>
        <name evidence="7" type="ORF">BROFUL_00935</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>a 1,2-diacyl-sn-glycero-3-phospho-L-serine + H(+) = a 1,2-diacyl-sn-glycero-3-phosphoethanolamine + CO2</text>
            <dbReference type="Rhea" id="RHEA:20828"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57262"/>
            <dbReference type="ChEBI" id="CHEBI:64612"/>
            <dbReference type="EC" id="4.1.1.65"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>pyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
        </cofactor>
        <text evidence="5">Binds 1 pyruvoyl group covalently per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5">Phospholipid metabolism; phosphatidylethanolamine biosynthesis; phosphatidylethanolamine from CDP-diacylglycerol: step 2/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Heterodimer of a large membrane-associated beta subunit and a small pyruvoyl-containing alpha subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="5">Is synthesized initially as an inactive proenzyme. Formation of the active enzyme involves a self-maturation process in which the active site pyruvoyl group is generated from an internal serine residue via an autocatalytic post-translational modification. Two non-identical subunits are generated from the proenzyme in this reaction, and the pyruvate is formed at the N-terminus of the alpha chain, which is derived from the carboxyl end of the proenzyme. The post-translation cleavage follows an unusual pathway, termed non-hydrolytic serinolysis, in which the side chain hydroxyl group of the serine supplies its oxygen atom to form the C-terminus of the beta chain, while the remainder of the serine residue undergoes an oxidative deamination to produce ammonia and the pyruvoyl prosthetic group on the alpha chain.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the phosphatidylserine decarboxylase family. PSD-A subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.65" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000115">
        <property type="protein sequence ID" value="KKO20337.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20337">
        <property type="protein sequence ID" value="KKO20337"/>
        <property type="gene ID" value="BROFUL_00935"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1181"/>
    <dbReference type="UniPathway" id="UPA00558">
        <property type="reaction ID" value="UER00616"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004609">
        <property type="term" value="F:phosphatidylserine decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006646">
        <property type="term" value="P:phosphatidylethanolamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00664">
        <property type="entry name" value="PS_decarb_PSD_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003817">
        <property type="entry name" value="PS_Dcarbxylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033175">
        <property type="entry name" value="PSD-A"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35809">
        <property type="entry name" value="PTHR35809"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02666">
        <property type="entry name" value="PS_Dcarbxylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00164">
        <property type="entry name" value="PS_decarb_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="1 5" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="5" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="5" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="3 5" id="KW-0456">Lyase</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword evidence="5" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="4 5" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 5" id="KW-0865">Zymogen</keyword>
    <feature type="chain" id="PRO_5023478367" description="Phosphatidylserine decarboxylase beta chain" evidence="5">
        <location>
            <begin position="1"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5023478368" description="Phosphatidylserine decarboxylase alpha chain" evidence="5">
        <location>
            <begin position="184"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with substrate; via pyruvic acid" evidence="5">
        <location>
            <position position="184"/>
        </location>
    </feature>
    <feature type="site" description="Cleavage (non-hydrolytic); by autocatalysis" evidence="5">
        <location>
            <begin position="183"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="modified residue" description="Pyruvic acid (Ser); by autocatalysis" evidence="5">
        <location>
            <position position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023317"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20337.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="219" mass="24349" checksum="A9B89DF4A90C1B7A" modified="2015-11-11" version="1">MRIPLTKYGRRELVLFGVPCVAGLVLSLIFLPWIAPLPVFVLAFLLNFFRDPDRDAPHGDGLIIAPADGTVSHIVPVFEDNYLHCNTTKVSIFMSVLNVHVNRMPAHGCVEYIKHTDGKFLDARDDECFRSNESNLMGLSLRENDIRIAVKQIAGRIARRIVCACKVGDVLRQGQRFGMIKFGSRVEVFVPDAVPFEVMVKVGDKVTAGKTVLGKIKNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWX7</accession>
    <name>A0A0M2UWX7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Site-specific tyrosine recombinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">xerD_4</name>
        <name evidence="3" type="ORF">BROFUL_00909</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000110">
        <property type="protein sequence ID" value="KKO20352.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20352">
        <property type="protein sequence ID" value="KKO20352"/>
        <property type="gene ID" value="BROFUL_00909"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tyr recombinase" evidence="2">
        <location>
            <begin position="58"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20352.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="252" mass="29671" checksum="55BC4AFEE098867F" modified="2015-11-11" version="1" fragment="single">KANINAGYLFVKVFMKRYTSINKELAMLSKAFNLAVKEWEWLKENPVSKVPKERENNERDRWLTDDEEKRLFNISHPWLWDIIIFDLHTGLRQDELLSLQWNRVNLLRRTIIIQETKSGKPRTIPLNQVAFDILTEKSKIRNIKNDLVFSSSVGNKIDRHNLRRAFNIAIEKAGLQNFHFHDLRHTFATRLAQKGIDIYKISKLLGHHDIRMTQRYSHHCPDSLRNGVQILEADYNLTTFRENGNVLNACNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX21</accession>
    <name>A0A0M2UX21_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01175</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000126">
        <property type="protein sequence ID" value="KKO20100.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20100">
        <property type="protein sequence ID" value="KKO20100"/>
        <property type="gene ID" value="BROFUL_01175"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644141" evidence="1">
        <location>
            <begin position="22"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20100.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="59" mass="6370" checksum="93941BBE187743DF" modified="2015-11-11" version="1">MLRYAASCLILIAVFLPVALAADTKNVPKAIAWEKSLDDAVAKAKAEHKGILLDFFVPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXF4</accession>
    <name>A0A0M2UXF4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Tetratricopeptide repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00506</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000070">
        <property type="protein sequence ID" value="KKO20763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20763">
        <property type="protein sequence ID" value="KKO20763"/>
        <property type="gene ID" value="BROFUL_00506"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="191"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="23"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="256" mass="30407" checksum="F22063A39BB8E33B" modified="2015-11-11" version="1">MLEQIKELEQDLRDIPPDKVERRLEKSKKLEELRKQKQDFEQQIIRLAETFSKIEINTERLKQAQQYFTQGKFREADAILKTEELSRDQQQLLDAKARKTRELEELNKQLISNASEFLIKAQITATNFSNPRRFQDACSFYEKSIQSYPTFENTWEYAYFLQQHNQHNEAERYYQEVIKRFGSELDDPTRAATLNNLGVLQKDKNEFDDALKSYKEALEIRKKLALANPQTYLPMSQQRSTIWVTCNPIRTSLTMH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXJ6</accession>
    <name>A0A0M2UXJ6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00706</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20587">
        <property type="protein sequence ID" value="KKO20587"/>
        <property type="gene ID" value="BROFUL_00706"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="115"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="358" mass="39513" checksum="7A6F85AB51AC28BF" modified="2015-11-11" version="1">MRGILFITLSACILFGLFGIKNAESQSDGQQVMKELDDFQKALSGWMKGLDTLGSQFAAMQKSVGDSLTPLKELEKTFKGNEEKLNSIVSRLEGIEKSSSASGVKELLDSFGKTLDIIKKLLSDLTKRVEDQEVKTAVLEKRYQEAQRPLDPIKKAIEDLNKLVTDKLGEQEKRIASAEGSIKTRMTDLDAVMKSFVGQSKTISDLEMRLKKIEKGGVVVAGTGTVGTALAKPTPAGTETVKVAVGTETVEAVKERVVTPEEEGFKELGDGFYIRNVALSLFGSSSQITGEIKNFSDRDWSIASFAIRVYNTAESLLFTQDFSIKTFKQGEVRSFNEIISGYTPLEIARYEIITKRRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXK1</accession>
    <name>A0A0M2UXK1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01623</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19691">
        <property type="protein sequence ID" value="KKO19691"/>
        <property type="gene ID" value="BROFUL_01623"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2004"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="2"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="34"/>
            <end position="41"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="317" mass="35773" checksum="5A4148F68F21BE51" modified="2015-11-11" version="1">MIKVDHLAKRYADVYAVDHISFEVEQGEILGLLGPNGAGKTTTMRILTCYMPATSGTATVSGYDVFRDSINVRKNIGYLPENVPLYPEMRVREYLSFRAKLKKLPYRERKAKIGECIEKCRIADVQNQIIGTLSKGYRQRVGLADTLVHDPKILILDEPTIGLDPNQIRQVRQLIKELGERHTILLSTHILPEVEMLCGRVIIINKGKIVAMDTPSNLAVQLRSGNNISLEVRGSGEKIRNALSGIRGVKKVVWQEKGELSNFNVEAERGMDIREDVFMSIVKNNGVIREMKQASITLEEIFHQITTQEHHEQEVMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXL7</accession>
    <name>A0A0M2UXL7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Glucose-1-phosphate thymidylyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01578</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>H(+) + N-acetyl-alpha-D-glucosamine 1-phosphate + UTP = diphosphate + UDP-N-acetyl-alpha-D-glucosamine</text>
            <dbReference type="Rhea" id="RHEA:13509"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
            <dbReference type="ChEBI" id="CHEBI:57776"/>
            <dbReference type="EC" id="2.7.7.23"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>acetyl-CoA + alpha-D-glucosamine 1-phosphate = CoA + H(+) + N-acetyl-alpha-D-glucosamine 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:13725"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:57776"/>
            <dbReference type="ChEBI" id="CHEBI:58516"/>
            <dbReference type="EC" id="2.3.1.157"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Nucleotide-sugar biosynthesis; UDP-N-acetyl-alpha-D-glucosamine biosynthesis; N-acetyl-alpha-D-glucosamine 1-phosphate from alpha-D-glucosamine 6-phosphate (route II): step 2/2.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4">Nucleotide-sugar biosynthesis; UDP-N-acetyl-alpha-D-glucosamine biosynthesis; UDP-N-acetyl-alpha-D-glucosamine from N-acetyl-alpha-D-glucosamine 1-phosphate: step 1/1.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000166">
        <property type="protein sequence ID" value="KKO19706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19706">
        <property type="protein sequence ID" value="KKO19706"/>
        <property type="gene ID" value="BROFUL_01578"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1947"/>
    <dbReference type="UniPathway" id="UPA00113">
        <property type="reaction ID" value="UER00532"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019134">
        <property type="term" value="F:glucosamine-1-phosphate N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003977">
        <property type="term" value="F:UDP-N-acetylglucosamine diphosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006048">
        <property type="term" value="P:UDP-N-acetylglucosamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023915">
        <property type="entry name" value="Bifunctiontional_GlmU_arc-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005835">
        <property type="entry name" value="NTP_transferase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00132">
        <property type="entry name" value="Hexapep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00483">
        <property type="entry name" value="NTP_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03992">
        <property type="entry name" value="Arch_glmU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NTP_transferase" evidence="5">
        <location>
            <begin position="10"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000731"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005166"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005208"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="308" mass="33936" checksum="8668F0DF36C7577F" modified="2015-11-11" version="1">MKCVEDVIKNKFVVLGGDDIFSRKDIQACLRHKYAVLGCKVENPSRFGVFVLAGKEVRKVVEKPQTYVSDIANTGLYVFDKNVFNFKLKKSPRGEYEIIDYINELVTDEKVVCETVKGHWLSVGYPWDLIQVNNVLVSEIKDEIKGKIEKHVTVKGKIHVGKGTVILSGTYIDGNVVIGENCVIGPNCFLRGNTTIGNNCHIGQAVEIKNSIIMDKARVPHLSYVGDSVVGENSNLGAGTITANLRHDNKNVKSEVKDELIDTGRRKFGAIIADDVHTGINTTIYPGRKLWPGVGTGPGEIVDKDKKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXM1</accession>
    <name>A0A0M2UXM1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01583</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000166">
        <property type="protein sequence ID" value="KKO19711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19711">
        <property type="protein sequence ID" value="KKO19711"/>
        <property type="gene ID" value="BROFUL_01583"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.450.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038573">
        <property type="entry name" value="BrnT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007460">
        <property type="entry name" value="BrnT_toxin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04365">
        <property type="entry name" value="BrnT_toxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="59" mass="7196" checksum="DDC4A457D14CA4C9" modified="2015-11-11" version="1">MRFEWDEKKRLRNLKKHGVDFADLERMFLGVTLTILDDRFDYEEHRFITFGLLNGVCPY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXM4</accession>
    <name>A0A0M2UXM4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two-component sensor kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_01564</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000164">
        <property type="protein sequence ID" value="KKO19716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19716">
        <property type="protein sequence ID" value="KKO19716"/>
        <property type="gene ID" value="BROFUL_01564"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1927"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001610">
        <property type="entry name" value="PAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013767">
        <property type="entry name" value="PAS_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00989">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13426">
        <property type="entry name" value="PAS_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00086">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HAMP" evidence="4">
        <location>
            <begin position="22"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="2">
        <location>
            <begin position="86"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="3">
        <location>
            <begin position="160"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="2">
        <location>
            <begin position="246"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="3">
        <location>
            <begin position="319"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="59"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO19716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="448" mass="51078" checksum="CB7A981630809D53" modified="2015-11-11" version="1">MRCFFAYVSAGVVTGLGISFAVSTSKPIREVKDAAERFAGGDLDYRVKTTRRDEIGVLAGSFNAMAEKLKEEIAEHKRTGEVLRESEQRFRTIFDSVIDGVLITDIETKEFYAGNTAICHMLGYPAEEIKNLKIADIHPKEEISFVMEQFEKQAKGETTLAKDIPVQRKNGTVFYADINTSRVTFDGKTYLMGIFRDITTRKAIEDALRVLNDSLEQRIAERTVALVQANKELTMEIAQRRRTEGELRKLFNAVEQSPCSVVITDVQGKIEYVNPKFSRATGYAPEEVIGQNPRVLKSGEKPSEEYKRLWDTITSGGEWEGEFHNKRKNGELYWEYASISPIRNHEGVITHFVAIKEDITERKRTEEELRKQRDHLEYLTNRLIAPTKSWKRSATRYRMTCVRRCGASMALARRCWKIALTSWMHRAKTTSIGCARPASIWGSLSMTC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXP1</accession>
    <name>A0A0M2UXP1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DEAD/DEAH box helicase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00409</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000055">
        <property type="protein sequence ID" value="KKO20863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20863">
        <property type="protein sequence ID" value="KKO20863"/>
        <property type="gene ID" value="BROFUL_00409"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.511"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="443" mass="50769" checksum="C037FE19713285F5" modified="2015-11-11" version="1" fragment="single">YVESHNYAIRQKAEIMIDHFHDEVIARHKIGGNARAMVVCSGIERAIQYYHAFCAYLTERKSPYKAIVAFSGEYDYGGKHLTESNLNGFPGNTIPDTFQHDPYRFLIVADKFQTGYDEPLLHTMYVDKQLSGIKAVQTLSRLNRAHPLKTDTFILDFMNDAEVIQYAFSDYYRTTILSNETNPNKLHDLKSALDGYQVYTQLQINDVVSLFLKGEAREKIDPVLDACVANYHAELDEDGQVDFKGKAKAFVRMYNFLASILPYANAQWERLSIFLNFLIPKLPAPKEDDLSKGILETIDMDSYRVEIQAVHKIQLVDDNAEIDPILIGSGGKKAEPELDHLSNIIKAFNEQFGNIDWKDADKIRKIIAEELPGKVSADKAYQNAMNQNDKQNARIEHDKALERVIVEMLTDHTELFKQFMDNQSFKKWLADTIFNETYKKKLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXU5</accession>
    <name>A0A0M2UXU5_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">CRISPR-associated exonuclease Cas4</fullName>
            <ecNumber evidence="6">3.1.12.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_02003</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA).</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="6">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="6">Mg(2+) or Mn(2+) required for ssDNA cleavage activity.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>iron-sulfur cluster</name>
            <dbReference type="ChEBI" id="CHEBI:30408"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the CRISPR-associated exonuclease Cas4 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.12.1" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000202">
        <property type="protein sequence ID" value="KKO19289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19289">
        <property type="protein sequence ID" value="KKO19289"/>
        <property type="gene ID" value="BROFUL_02003"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2494"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013343">
        <property type="entry name" value="CRISPR-assoc_prot_Cas4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022765">
        <property type="entry name" value="Dna2/Cas4_DUF83"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011604">
        <property type="entry name" value="PDDEXK-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01930">
        <property type="entry name" value="Cas_Cas4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00372">
        <property type="entry name" value="cas4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="6" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 6" id="KW-0408">Iron</keyword>
    <keyword evidence="3 6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5 6" id="KW-0464">Manganese</keyword>
    <keyword evidence="1 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0540">Nuclease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cas_Cas4" evidence="7">
        <location>
            <begin position="11"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU365022"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="227" mass="25414" checksum="E3962BB2DFC65383" modified="2015-11-11" version="1">MYSEDDLIPISALSDFTFCERRAALHFIERVWEDNVMTAEGSILHERVDDESASEVRGSVRIARSVWLRSLVLGLIGKADMVEFHKTATGGVKLEGVSGLWLPFPVEYKRGYLRHELSFAIQLCAQGICLEEMLGGNIPSGAIFYGKTRRRMDVVFDKALRTETENASRKVHELIASGITPKAEYSKKCKLCSLLNLCMPKVSSRVSNYLMRAMDSASDAKEEAQND</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXX6</accession>
    <name>A0A0M2UXX6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00574</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000079">
        <property type="protein sequence ID" value="KKO20707.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20707">
        <property type="protein sequence ID" value="KKO20707"/>
        <property type="gene ID" value="BROFUL_00574"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="72"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="72"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20707.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="223" mass="24938" checksum="2D41A28DBB1D374A" modified="2015-11-11" version="1">MANIPMVGNAQGDTNFGGLAGAPASEASFYLARALLAKGDAEGASNTLYEIGRTIPEDLRDDLNQLNMAIARAHSQQQQEQQDPYAGMSQEQRSYADRQYQRDRERQQMAARQFASKAKVVPELVGVWEMSPDNKFLPWKKTLTIESNANFTIASHNEGSARRGKVDVQQAGSMAQGVPDNVNGQMMMFDESGSVSTMWYEFIDRDRMRITDLDGTLYEARRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXX8</accession>
    <name>A0A0M2UXX8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01984</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19324">
        <property type="protein sequence ID" value="KKO19324"/>
        <property type="gene ID" value="BROFUL_01984"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="146" mass="17045" checksum="DE7295BC3E735056" modified="2015-11-11" version="1">MKTETKNRFLNSVTLPNYDFILTAPEFNKDGEEFTIWFFEGILERNPNHVDCLLYLGNTYTAQGMYEKGLLVDQKLCRLRPDDPMVHYNLACSYALLKNVNTAFEALEKAIILGYKDICHLENDKDLAHLREDARYQKLVEKIKFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY28</accession>
    <name>A0A0M2UY28_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Proline--tRNA ligase</fullName>
            <ecNumber evidence="8">6.1.1.15</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Prolyl-tRNA synthetase</fullName>
            <shortName evidence="8">ProRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">proS</name>
        <name evidence="10" type="ORF">BROFUL_00499</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys-tRNA(Pro) is not edited by ProRS.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>ATP + L-proline + tRNA(Pro) = AMP + diphosphate + L-prolyl-tRNA(Pro)</text>
            <dbReference type="Rhea" id="RHEA:14305"/>
            <dbReference type="Rhea" id="RHEA-COMP:9700"/>
            <dbReference type="Rhea" id="RHEA-COMP:9702"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:60039"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78532"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.15"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="2 8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="8">Consists of three domains: the N-terminal catalytic domain, the editing domain and the C-terminal anticodon-binding domain.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the class-II aminoacyl-tRNA synthetase family. ProS type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.15" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000069">
        <property type="protein sequence ID" value="KKO20772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20772">
        <property type="protein sequence ID" value="KKO20772"/>
        <property type="gene ID" value="BROFUL_00499"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.626"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA editing activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004827">
        <property type="term" value="F:proline-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006433">
        <property type="term" value="P:prolyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00861">
        <property type="entry name" value="ProRS_anticodon_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00779">
        <property type="entry name" value="ProRS_core_prok"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.800">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01569">
        <property type="entry name" value="Pro_tRNA_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002314">
        <property type="entry name" value="aa-tRNA-synt_IIb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004154">
        <property type="entry name" value="Anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036621">
        <property type="entry name" value="Anticodon-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002316">
        <property type="entry name" value="Pro-tRNA-ligase_IIa"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004500">
        <property type="entry name" value="Pro-tRNA-synth_IIa_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023717">
        <property type="entry name" value="Pro-tRNA-Synthase_IIa_type1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044140">
        <property type="entry name" value="ProRS_anticodon_short"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033730">
        <property type="entry name" value="ProRS_core_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036754">
        <property type="entry name" value="YbaK/aa-tRNA-synt-asso_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007214">
        <property type="entry name" value="YbaK/aa-tRNA-synth-assoc-dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03129">
        <property type="entry name" value="HGTP_anticodon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00587">
        <property type="entry name" value="tRNA-synt_2b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04073">
        <property type="entry name" value="tRNA_edit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01046">
        <property type="entry name" value="TRNASYNTHPRO"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55826">
        <property type="entry name" value="SSF55826"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00409">
        <property type="entry name" value="proS_fam_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="5 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 8" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 8" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AA_TRNA_LIGASE_II" evidence="9">
        <location>
            <begin position="31"/>
            <end position="461"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01569"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO20772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="569" mass="63389" checksum="092F6064A1CB7422" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY63</accession>
    <name>A0A0M2UY63_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PIN domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00240</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000030">
        <property type="protein sequence ID" value="KKO21023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21023">
        <property type="protein sequence ID" value="KKO21023"/>
        <property type="gene ID" value="BROFUL_00240"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.297"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09873">
        <property type="entry name" value="PIN_Pae0151-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002716">
        <property type="entry name" value="PIN_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044153">
        <property type="entry name" value="PIN_Pae0151-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01850">
        <property type="entry name" value="PIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PINc" evidence="1">
        <location>
            <begin position="5"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="130" mass="14412" checksum="7584A028DCCDACE9" modified="2015-11-11" version="1">MNLAVDTSIIIAVITNESHKKQLIKATSNVDLIAPSSLHWEIGNAFSAMFKRKKINIRQAISALEAYRQISLRFSDIELDVALELSNNLNIYAYDAYVIGCALKHNAALISLDDRLLRAASQAGVKIREV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY98</accession>
    <name>A0A0M2UY98_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DNA polymerase III delta subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01333</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000139">
        <property type="protein sequence ID" value="KKO19941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19941">
        <property type="protein sequence ID" value="KKO19941"/>
        <property type="gene ID" value="BROFUL_01333"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009360">
        <property type="term" value="C:DNA polymerase III complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008921">
        <property type="entry name" value="DNA_pol3_clamp-load_cplx_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010372">
        <property type="entry name" value="DNA_pol3_delta_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022754">
        <property type="entry name" value="DNA_pol_III_gamma-3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005790">
        <property type="entry name" value="DNA_polIII_delta"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06144">
        <property type="entry name" value="DNA_pol3_delta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12169">
        <property type="entry name" value="DNA_pol3_gamma3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48019">
        <property type="entry name" value="SSF48019"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01128">
        <property type="entry name" value="holA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA_pol3_delta" evidence="1">
        <location>
            <begin position="20"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="domain" description="DNA_pol3_gamma3" evidence="2">
        <location>
            <begin position="195"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="330" mass="37672" checksum="3E8AAE48C9773E2B" modified="2015-11-11" version="1">MDIYQLKTLMNKGKTFPIFVFFGDEAFFIHEALSATKTNLLKDNDPSIALIEFNGDEISGGVVFDELRTVPFFPGVNKLVLVEEADEFIDKNRSILEKYLQTPASRSHLVLICKKWDKRTKLATLVDKVGISLECKKLKEHSLPNWVQAHARQYKKEINAPATQKLVDSVGGNLAILDKHLEKLSIYLGEKTTIDERDVDALVGVDRDRTVFELTEAVAQRNVTLALKVLIQMLSHGEDSARIISLLAWQIKRLWRAKQLLQQGENEQKVASELQIIPFFAKRFFEQVKRYSVEDLAKNHELLLETDVKTKTSSMNTQLLLELLVYRLCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYE2</accession>
    <name>A0A0M2UYE2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DNA topoisomerase I</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00403</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000054">
        <property type="protein sequence ID" value="KKO20867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20867">
        <property type="protein sequence ID" value="KKO20867"/>
        <property type="gene ID" value="BROFUL_00403"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.503"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003917">
        <property type="term" value="F:DNA topoisomerase type I (single strand cut, ATP-independent) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006265">
        <property type="term" value="P:DNA topological change"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000380">
        <property type="entry name" value="Topo_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013497">
        <property type="entry name" value="Topo_IA_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013824">
        <property type="entry name" value="Topo_IA_cen_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023405">
        <property type="entry name" value="Topo_IA_core_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013498">
        <property type="entry name" value="Topo_IA_Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42785">
        <property type="entry name" value="PTHR42785"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01131">
        <property type="entry name" value="Topoisom_bac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01396">
        <property type="entry name" value="zf-C4_Topoisom"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56712">
        <property type="entry name" value="SSF56712"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Topoisom_bac" evidence="1">
        <location>
            <begin position="2"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="domain" description="zf-C4_Topoisom" evidence="2">
        <location>
            <begin position="112"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="domain" description="zf-C4_Topoisom" evidence="2">
        <location>
            <begin position="159"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="domain" description="zf-C4_Topoisom" evidence="2">
        <location>
            <begin position="205"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="domain" description="zf-C4_Topoisom" evidence="2">
        <location>
            <begin position="244"/>
            <end position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01131"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01396"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="295" mass="32620" checksum="D5493307D5311712" modified="2015-11-11" version="1">MKTLEKMGIGRPSTYAAIISTIQDRGYVKQEKRAFYATELGILVTEKLIEHFAKIMDVKFTSHMEDELDKIEDEKVGWLKVLKEFYEPFKIDLEKAVGEMKSVKGTPEESNQKCTLCGQPMVIRWGRHGKFLGCSGFPTCKSTLPLDEKGEPSPPETTDQKCEKCGSAMVVKTSRHGKFLACSAYPTCKNTKSLGGETTKVEPTDEKCEKCGSPMVIRSSKRGRFMGCSAYPKCRNLKSLPTGVKCPNEGCGGDLVQRRSKKGGIFFGCSKYPECDYIAKELPGTSDAIKDDSPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYH0</accession>
    <name>A0A0M2UYH0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01303</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000136">
        <property type="protein sequence ID" value="KKO20031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20031">
        <property type="protein sequence ID" value="KKO20031"/>
        <property type="gene ID" value="BROFUL_01303"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001610">
        <property type="entry name" value="PAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13426">
        <property type="entry name" value="PAS_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00065">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00086">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PAS" evidence="1">
        <location>
            <begin position="61"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="2">
        <location>
            <begin position="133"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="3">
        <location>
            <begin position="391"/>
            <end position="524"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="524" mass="58458" checksum="BF39046F28C2C9C4" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYH1</accession>
    <name>A0A0M2UYH1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">dITP/XTP pyrophosphatase</fullName>
            <ecNumber evidence="6">3.6.1.66</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Non-canonical purine NTP pyrophosphatase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Non-standard purine NTP pyrophosphatase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Nucleoside-triphosphate diphosphatase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Nucleoside-triphosphate pyrophosphatase</fullName>
            <shortName evidence="6">NTPase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_00661</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>H2O + ITP = diphosphate + H(+) + IMP</text>
            <dbReference type="Rhea" id="RHEA:29399"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <dbReference type="ChEBI" id="CHEBI:61402"/>
            <dbReference type="EC" id="3.6.1.66"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>H2O + XTP = diphosphate + H(+) + XMP</text>
            <dbReference type="Rhea" id="RHEA:28610"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57464"/>
            <dbReference type="ChEBI" id="CHEBI:61314"/>
            <dbReference type="EC" id="3.6.1.66"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>dITP + H2O = dIMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:28342"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61194"/>
            <dbReference type="ChEBI" id="CHEBI:61382"/>
            <dbReference type="EC" id="3.6.1.66"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="6">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the HAM1 NTPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.66" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000087">
        <property type="protein sequence ID" value="KKO20625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20625">
        <property type="protein sequence ID" value="KKO20625"/>
        <property type="gene ID" value="BROFUL_00661"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.840"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035870">
        <property type="term" value="F:dITP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036220">
        <property type="term" value="F:ITP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017111">
        <property type="term" value="F:nucleoside-triphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036222">
        <property type="term" value="F:XTP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009117">
        <property type="term" value="P:nucleotide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009146">
        <property type="term" value="P:purine nucleoside triphosphate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00515">
        <property type="entry name" value="HAM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01405">
        <property type="entry name" value="Non_canon_purine_NTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020922">
        <property type="entry name" value="dITP/XTP_pyrophosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002637">
        <property type="entry name" value="Ham1p-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029001">
        <property type="entry name" value="ITPase-like_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11067">
        <property type="entry name" value="PTHR11067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01725">
        <property type="entry name" value="Ham1p_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52972">
        <property type="entry name" value="SSF52972"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00042">
        <property type="entry name" value="TIGR00042"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0546">Nucleotide metabolism</keyword>
    <keyword evidence="3 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="17"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="163"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="191"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="6">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="51"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="80"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="81"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="186"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="210" mass="23481" checksum="2ACDAC878B5CEA39" modified="2015-11-11" version="1">MTSFVNTLHAKTILIATQNEKKRAEIKEILKDVPGIRLRGPEDFPFLPLVEEDGTTFQENAVKKAIPLAKACNTWAMADDSGLEIDALGGRPGVYSCRYAGANATDEKNREKVLSELRGVPRERRTAGFVCAIALAGPQGLFFVVEGRCEGFITEEPKGKYGFGYDSIFYAPDHRQTFAELNPAIKNRISHRAHALMQFKEKIEPLIRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYJ6</accession>
    <name>A0A0M2UYJ6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01750</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000181">
        <property type="protein sequence ID" value="KKO19549.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19549">
        <property type="protein sequence ID" value="KKO19549"/>
        <property type="gene ID" value="BROFUL_01750"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2168"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004518">
        <property type="entry name" value="MazG_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011551">
        <property type="entry name" value="NTP_PyrPHydrolase_MazG"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30522">
        <property type="entry name" value="PTHR30522"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03819">
        <property type="entry name" value="MazG"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00444">
        <property type="entry name" value="mazG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MazG" evidence="1">
        <location>
            <begin position="16"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="domain" description="MazG" evidence="1">
        <location>
            <begin position="154"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19549.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="249" mass="28648" checksum="2A78659475411DB8" modified="2015-11-11" version="1">MQKLRSKDGCPWDKEQNHASLKPHLVEETYEVIDAIDSGDPAKLKEELADLFFHIIFHCQIATEKGEFDMGSVMALCLDKMTRRHPHVFGDASATTPEEVIHQWEQIKKTEKGYEERKFIVDGLPKHLPALQKAQKLQKKVAKVGFDWTNIQDVIAKVDEELREVKDAIRENKPGHIEEEVGDLLFSVVNLSRFLNFDTENVLHKTICKFVDRFKKVEMELASMGKDIEKCTLEEMDAIWNKVKGSISK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYL1</accession>
    <name>A0A0M2UYL1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01735</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000180">
        <property type="protein sequence ID" value="KKO19564.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19564">
        <property type="protein sequence ID" value="KKO19564"/>
        <property type="gene ID" value="BROFUL_01735"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="173"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19564.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="207" mass="22920" checksum="A8C3C6499496301B" modified="2015-11-11" version="1">MPYLEEDDLEVFEDDEALLETEDDTEKWEETFGEARYPRYRRGRATRLPSRRVGGLKGGSINTPAGRAQFKFEKPVATRESVDNLAKELRTAIKKVDETLDKNTSMLDKKVNAIDATLKKGQQQTQQMSMMSILPLLLTKPPQIESITPVPATGATPTPMPIQTTTYKKDDSFFLIFALMAMMPGGLGGGTGDSSNMMPLVLAMALK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYM2</accession>
    <name>A0A0M2UYM2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00355</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000044">
        <property type="protein sequence ID" value="KKO20922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20922">
        <property type="protein sequence ID" value="KKO20922"/>
        <property type="gene ID" value="BROFUL_00355"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="54"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="54"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="81" mass="9407" checksum="E76ADBD85CC05357" modified="2015-11-11" version="1">MDLIYDVSNHIEGCLPNVFCDFGLDDEDYVGYLNEGKVWRRGKIFLRSKMPDRSWEKSKKSQKNLKSAKGGNKHEKKGLRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYS8</accession>
    <name>A0A0M2UYS8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Heat shock protein Hsp20</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00038</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the small heat shock protein (HSP20) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000006">
        <property type="protein sequence ID" value="KKO21243.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21243">
        <property type="protein sequence ID" value="KKO21243"/>
        <property type="gene ID" value="BROFUL_00038"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002068">
        <property type="entry name" value="A-crystallin/Hsp20_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008978">
        <property type="entry name" value="HSP20-like_chaperone"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00011">
        <property type="entry name" value="HSP20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49764">
        <property type="entry name" value="SSF49764"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01031">
        <property type="entry name" value="SHSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="SHSP" evidence="3">
        <location>
            <begin position="37"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003616"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS01031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO21243.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="149" mass="16415" checksum="7AF94504EE8E19B3" modified="2015-11-11" version="1">MGLIKWDRSGPLDSLAHIQKEMSDLLDILSSAPQGEGYAAMEFPPIIVSLNEESVFVRAELPGVRIGDLDIQVVDDVLTIKGERRPAAPAAKATYLRRERNYGTFARSIMLPEKVDVEKVAASYKNGVLLVTLPRASETKPRQVVIQKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYY4</accession>
    <name>A0A0M2UYY4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_00443</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000058">
        <property type="protein sequence ID" value="KKO20830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20830">
        <property type="protein sequence ID" value="KKO20830"/>
        <property type="gene ID" value="BROFUL_00443"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007016">
        <property type="entry name" value="O-antigen_ligase-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001440">
        <property type="entry name" value="TPR_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00515">
        <property type="entry name" value="TPR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04932">
        <property type="entry name" value="Wzy_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="5"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0802">TPR repeat</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="45"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="75"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="109"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="134"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="179"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="213"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="238"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="261"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="394"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="425"/>
            <end position="443"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="449"/>
            <end position="467"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="509"/>
            <end position="530"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="4">
        <location>
            <begin position="687"/>
            <end position="720"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="4">
        <location>
            <begin position="721"/>
            <end position="754"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="4">
        <location>
            <begin position="755"/>
            <end position="788"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="4">
        <location>
            <begin position="789"/>
            <end position="822"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="4">
        <location>
            <begin position="893"/>
            <end position="926"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="942" mass="106515" checksum="6FE61AC3579A0D55" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZC1</accession>
    <name>A0A0M2UZC1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Thymidylate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00953</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000116">
        <property type="protein sequence ID" value="KKO20321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20321">
        <property type="protein sequence ID" value="KKO20321"/>
        <property type="gene ID" value="BROFUL_00953"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1200"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050797">
        <property type="term" value="F:thymidylate synthase (FAD) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006231">
        <property type="term" value="P:dTMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003669">
        <property type="entry name" value="Thymidylate_synthase_ThyX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036098">
        <property type="entry name" value="Thymidylate_synthase_ThyX_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34934">
        <property type="entry name" value="PTHR34934"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02511">
        <property type="entry name" value="Thy1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69796">
        <property type="entry name" value="SSF69796"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02170">
        <property type="entry name" value="thyX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51331">
        <property type="entry name" value="THYX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="155" mass="17637" checksum="E7375C3541F849F5" modified="2015-11-11" version="1">MRSTPCPEEIVAQAAKLCYSPASIDDLKEQIERKGQTDFIGKLTDMRHLSPLEHVTFTFGVEGISRSCSHQIVRHRLASYSQQSQRYVGQQSGKTGGFHFIVPPGIEKIGKKPWFIEKMHLIQQWYDELTEHSGIREKAPSRTPAFCCPMPPRPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZK0</accession>
    <name>A0A0M2UZK0_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Glycine--tRNA ligase beta subunit</fullName>
            <ecNumber evidence="9">6.1.1.14</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Glycyl-tRNA synthetase beta subunit</fullName>
            <shortName evidence="9">GlyRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">glyS</name>
        <name evidence="11" type="ORF">BROFUL_00236</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly)</text>
            <dbReference type="Rhea" id="RHEA:16013"/>
            <dbReference type="Rhea" id="RHEA-COMP:9664"/>
            <dbReference type="Rhea" id="RHEA-COMP:9683"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78522"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.14"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="9">Tetramer of two alpha and two beta subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.14" evidence="9"/>
    <dbReference type="EMBL" id="LAQJ01000029">
        <property type="protein sequence ID" value="KKO21035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21035">
        <property type="protein sequence ID" value="KKO21035"/>
        <property type="gene ID" value="BROFUL_00236"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.289"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004814">
        <property type="term" value="F:arginine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004820">
        <property type="term" value="F:glycine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006420">
        <property type="term" value="P:arginyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006426">
        <property type="term" value="P:glycyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00255">
        <property type="entry name" value="Gly_tRNA_synth_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008909">
        <property type="entry name" value="DALR_anticod-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015944">
        <property type="entry name" value="Gly-tRNA-synth_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006194">
        <property type="entry name" value="Gly-tRNA-synth_heterodimer"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30075">
        <property type="entry name" value="PTHR30075"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05746">
        <property type="entry name" value="DALR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02092">
        <property type="entry name" value="tRNA_synt_2f"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01045">
        <property type="entry name" value="TRNASYNTHGB"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00211">
        <property type="entry name" value="glyS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50861">
        <property type="entry name" value="AA_TRNA_LIGASE_II_GLYAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="6 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 9" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DALR_1" evidence="10">
        <location>
            <begin position="602"/>
            <end position="691"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00255"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF05746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO21035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="712" mass="81016" checksum="1743F7BE80EE7C35" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V057</accession>
    <name>A0A0M2V057_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Sulfotransferase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01154</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000124">
        <property type="protein sequence ID" value="KKO20129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20129">
        <property type="protein sequence ID" value="KKO20129"/>
        <property type="gene ID" value="BROFUL_01154"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008476">
        <property type="term" value="F:protein-tyrosine sulfotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006478">
        <property type="term" value="P:peptidyl-tyrosine sulfation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026634">
        <property type="entry name" value="TPST"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12788">
        <property type="entry name" value="PTHR12788"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="348" mass="40484" checksum="F339CD49DBA871A6" modified="2015-11-11" version="1">MVKSGPFTWIGLFEHERYSAMINTLDRDAPLFIVGCSRSGTTLMRLILNTHSKICIPEETRYIPIIGANLHKYGDLSEDNNLFTLIQDINKQLERIVYGWKRLPVIEEVVKRLKKRTFQDIVMHVNTYFNTKSTIEIWGDKTPLYVNSILFIGKLFPRSKFINMVRDGRDVAVSTLRAKLGGTNLTDISLEWNECILNGMLAEKYFGPKRVKTIRYEDLASDPKTVLLMICDFLNINYEESMTQYYATSDAQALSKVKHHSNVIKPISSDSVGGYKKVLKQDQRKTLELYMWNTLKTYGYDLEFDFLPPPPKHYRYLSLFHSCVKLLLRGAPKKLVRRSWFFRKRVAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V094</accession>
    <name>A0A0M2V094_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Excinuclease ABC subunit C</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01118</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000122">
        <property type="protein sequence ID" value="KKO20159.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20159">
        <property type="protein sequence ID" value="KKO20159"/>
        <property type="gene ID" value="BROFUL_01118"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000305">
        <property type="entry name" value="GIY-YIG_endonuc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035901">
        <property type="entry name" value="GIY-YIG_endonuc_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01541">
        <property type="entry name" value="GIY-YIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00465">
        <property type="entry name" value="GIYc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82771">
        <property type="entry name" value="SSF82771"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50164">
        <property type="entry name" value="GIY_YIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GIY-YIG" evidence="1">
        <location>
            <begin position="273"/>
            <end position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20159.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="498" mass="57160" checksum="15B62B19B934E9FA" modified="2015-11-11" version="1">MRDKIYAYLKSQETGATSSELVEQVLKIKGASPRISEALIQTAVAGDRRFTTDEHHHWKIAERGGTPLPEAEFVLLSSVMVDTAERSKTIVEVSAQRMRNDTVTDRLHLCIRPGVSAESSIRLPPDFAQEIRDGVSAEKAACSLAQFFGEAVLVGYDIQPVIHQINTMLHALHKTIENPSLCLRSLTKKLMPNLQQKSLDDIAAHFKLPILDVRRSEKEIDVIADIFSRYKDLLKAQGFDTVEAVLEFQYPHIEHVDFSRYAFDKYFLLSIPQKPGVYMMKDKDDAIIYLGKAKNLRARVSSYFWNTADRLQKITNLLRDVHRIEYEVTGSELAAMLMEYRLIQQYRPRLNQQTEVHERPARYGRLKNFIAILPSSAEASLDLFFIREGLPLKQYEVLKDAINLSEVEKILDTMYYDEGTQDRSSGRANGWKNNRNDRLPARIENGETDIVLSWLEANKDSVNYINTDTVCTKKACLELIKDYIRDEETPQKKHFRMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0M8</accession>
    <name>A0A0M2V0M8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Universal stress protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00983</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the universal stress protein A family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000118">
        <property type="protein sequence ID" value="KKO20274.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20274">
        <property type="protein sequence ID" value="KKO20274"/>
        <property type="gene ID" value="BROFUL_00983"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006015">
        <property type="entry name" value="Universal_stress_UspA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006016">
        <property type="entry name" value="UspA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00582">
        <property type="entry name" value="Usp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006276">
        <property type="entry name" value="UspA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01438">
        <property type="entry name" value="UNVRSLSTRESS"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Usp" evidence="3">
        <location>
            <begin position="5"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008791"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR006276"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20274.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="152" mass="16899" checksum="59E786D579BA0408" modified="2015-11-11" version="1">MIVLKKILCPVDHSECSYLALKYAISLALKDEAQLYLMHVIDVRLYDTEIYKFSPYKLNEIDLNKTREDLIKSLPEGTSDVLNVETIVVKGVPFQEIITAAASINADIIVIGTHGRTGLSHAIMGSVAEKVVRKAPCPVLTVRMPHTMPHKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0Q3</accession>
    <name>A0A0M2V0Q3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Hybrid sensor</fullName>
            <ecNumber evidence="4">2.7.3.-</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">gacS_1</name>
        <name evidence="4" type="ORF">BROFUL_00973</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.3.-" evidence="4"/>
    <dbReference type="EMBL" id="LAQJ01000117">
        <property type="protein sequence ID" value="KKO20299.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20299">
        <property type="protein sequence ID" value="KKO20299"/>
        <property type="gene ID" value="BROFUL_00973"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019247">
        <property type="entry name" value="Histidine_kinase_BarA_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09984">
        <property type="entry name" value="sCache_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="16"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="189"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="3">
        <location>
            <begin position="213"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="281"/>
            <end position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20299.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="387" mass="44164" checksum="7577C8FA5C1CF110" modified="2015-11-11" version="1">MHVAREKKRLNLATKFNFLTIGVILVTAVGISIFLIRAQISHSYRNLLNHGMSVAAMMSQNSEYGIYTEDKDAIRQIVKSLAVDADVAYVCLYKNKRKLICESFQSEIKTPSLHHYKKSYRSLQMLHEEFVNKKDGLRYIDIVAPVASAIDSDSPEILGDDNGTTRQKIIGYVQLGLTKDGLRKRIRQIIVSTGYFTIICVVVGIAVTLFLTRRITLPIRDLNIATQKISEGILEQHIRITSHDEIADLAQAFNHMLGRLRDYRNQAEERTGQLVLANQKMALEIAERKRVERALEQKTKELSRSNSELEQFAYIVSHDLQEPLRKVMAFGDRLLDKCGETMSSEGKEYIVRMQNASQRMKTLITDLLVFSRLRTKAQPLPRLISPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0Q7</accession>
    <name>A0A0M2V0Q7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00978</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000117">
        <property type="protein sequence ID" value="KKO20304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20304">
        <property type="protein sequence ID" value="KKO20304"/>
        <property type="gene ID" value="BROFUL_00978"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024747">
        <property type="entry name" value="Pyridox_Oxase-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12900">
        <property type="entry name" value="Pyridox_ox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="166" mass="18783" checksum="B726D46545F669C3" modified="2015-11-11" version="1">MRRKDKEITDGDEIEEILLTAMVGRLGTCADGIPYITPMNYTYDRESSRIFLHCAQEGRKLQNIRSNPNVCFEVEEVKEVIVKQPTCASSVAYRSVVLFGTITILSEVDAKNYALRKLAEKYAPQNPKVPFTDAMLNKTNVLEIEIREMTAKRSPVRPAITDPSKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1C6</accession>
    <name>A0A0M2V1C6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">ATP-binding protein Uup</fullName>
            <ecNumber evidence="5">3.6.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">uup</name>
        <name evidence="9" type="ORF">BROFUL_00763</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Probably plays a role in ribosome assembly or function. May be involved in resolution of branched DNA intermediates that result from template switching in postreplication gaps. Binds DNA and has ATPase activity.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="5">Associates with ribosomes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the ABC transporter superfamily. ABCF family. Uup subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.-" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000096">
        <property type="protein sequence ID" value="KKO20519.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20519">
        <property type="protein sequence ID" value="KKO20519"/>
        <property type="gene ID" value="BROFUL_00763"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.966"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00848">
        <property type="entry name" value="Uup"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032524">
        <property type="entry name" value="ABC_tran_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032781">
        <property type="entry name" value="ABC_tran_Xtn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043686">
        <property type="entry name" value="Uup"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037118">
        <property type="entry name" value="Val-tRNA_synth_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16326">
        <property type="entry name" value="ABC_tran_CTD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12848">
        <property type="entry name" value="ABC_tran_Xtn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5" id="KW-0234">DNA repair</keyword>
    <keyword evidence="5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 5 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="4"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="294"/>
            <end position="511"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="502"/>
            <end position="528"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <begin position="36"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <begin position="326"/>
            <end position="333"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00848"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20519.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="604" mass="68476" checksum="78667B05AB60FF71" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1F3</accession>
    <name>A0A0M2V1F3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Methyltransf_25 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00672</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20554">
        <property type="protein sequence ID" value="KKO20554"/>
        <property type="gene ID" value="BROFUL_00672"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041698">
        <property type="entry name" value="Methyltransf_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13649">
        <property type="entry name" value="Methyltransf_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Methyltransf_25" evidence="1">
        <location>
            <begin position="35"/>
            <end position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="182" mass="21066" checksum="9ABD84D9F91F0107" modified="2015-11-11" version="1">MIWDKRYEKEAYIFGKEPVEFLREQIDILPRGKALDLAMGEGRNAVFLAKQGFEVDGCDVSEVAVKKARELARENHVAIHAFVADLETYPLPKDTYDVIACFYYLQRDLVPQMKVALKPGGVIIYETYTIENWERGFEGPKKKEYLLQPNELLNLFKDLKIVYYRELVLDNKKAIASLIAKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1I9</accession>
    <name>A0A0M2V1I9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Thiamine-phosphate synthase</fullName>
            <shortName evidence="8">TP synthase</shortName>
            <shortName evidence="8">TPS</shortName>
            <ecNumber evidence="8">2.5.1.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Thiamine-phosphate pyrophosphorylase</fullName>
            <shortName evidence="8">TMP pyrophosphorylase</shortName>
            <shortName evidence="8">TMP-PPase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">thiE</name>
        <name evidence="11" type="ORF">BROFUL_00260</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8 9">
            <text>2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate + 4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine + 2 H(+) = CO2 + diphosphate + thiamine phosphate</text>
            <dbReference type="Rhea" id="RHEA:47848"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37575"/>
            <dbReference type="ChEBI" id="CHEBI:57841"/>
            <dbReference type="ChEBI" id="CHEBI:62890"/>
            <dbReference type="EC" id="2.5.1.3"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 8 9">
            <text>2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate + 4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine + 2 H(+) = CO2 + diphosphate + thiamine phosphate</text>
            <dbReference type="Rhea" id="RHEA:47844"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37575"/>
            <dbReference type="ChEBI" id="CHEBI:57841"/>
            <dbReference type="ChEBI" id="CHEBI:62899"/>
            <dbReference type="EC" id="2.5.1.3"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 8 9">
            <text>4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine + 4-methyl-5-(2-phosphooxyethyl)-thiazole + H(+) = diphosphate + thiamine phosphate</text>
            <dbReference type="Rhea" id="RHEA:22328"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37575"/>
            <dbReference type="ChEBI" id="CHEBI:57841"/>
            <dbReference type="ChEBI" id="CHEBI:58296"/>
            <dbReference type="EC" id="2.5.1.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="8">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4 8">Cofactor biosynthesis; thiamine diphosphate biosynthesis; thiamine phosphate from 4-amino-2-methyl-5-diphosphomethylpyrimidine and 4-methyl-5-(2-phosphoethyl)-thiazole: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8 9">Belongs to the thiamine-phosphate synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.3" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000031">
        <property type="protein sequence ID" value="KKO21011.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21011">
        <property type="protein sequence ID" value="KKO21011"/>
        <property type="gene ID" value="BROFUL_00260"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00060">
        <property type="reaction ID" value="UER00141"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004789">
        <property type="term" value="F:thiamine-phosphate diphosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009229">
        <property type="term" value="P:thiamine diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00564">
        <property type="entry name" value="TMP_TenI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00097">
        <property type="entry name" value="TMP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036206">
        <property type="entry name" value="ThiamineP_synth_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022998">
        <property type="entry name" value="ThiamineP_synth_TenI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034291">
        <property type="entry name" value="TMP_synthase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02581">
        <property type="entry name" value="TMP-TENI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51391">
        <property type="entry name" value="SSF51391"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00693">
        <property type="entry name" value="thiE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 8 9" id="KW-0784">Thiamine biosynthesis</keyword>
    <keyword evidence="5 8 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TMP-TENI" evidence="10">
        <location>
            <begin position="1"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="region of interest" description="HMP-PP binding" evidence="8">
        <location>
            <begin position="2"/>
            <end position="6"/>
        </location>
    </feature>
    <feature type="region of interest" description="THZ-P binding" evidence="8">
        <location>
            <begin position="99"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="region of interest" description="THZ-P binding" evidence="8">
        <location>
            <begin position="150"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="34"/>
        </location>
        <ligand>
            <name>4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine</name>
            <dbReference type="ChEBI" id="CHEBI:57841"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="35"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="73"/>
        </location>
        <ligand>
            <name>4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine</name>
            <dbReference type="ChEBI" id="CHEBI:57841"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="102"/>
        </location>
        <ligand>
            <name>4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine</name>
            <dbReference type="ChEBI" id="CHEBI:57841"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="130"/>
        </location>
        <ligand>
            <name>2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:62899"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="KKO21011.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="183" mass="19569" checksum="88C0F8AAE7300B4D" modified="2015-11-11" version="1">MQLREKGVAAHELYCLARELRRATLDFCATFIVNERVDIALAVEADGVHLGWQSIPVVAARRLLGSEKLIGVSTHSRQEALQARDAGANYITFGPIFNTPSKEGLVLPTGAEAIRSLKNEVGRPVIALGGIHQDNVENVLHGGADGIAVISSIMAADNPEEAARSLAEKITTFWSGTSRLTDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1L5</accession>
    <name>A0A0M2V1L5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nucleotide sugar dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00237</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000029">
        <property type="protein sequence ID" value="KKO21036.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21036">
        <property type="protein sequence ID" value="KKO21036"/>
        <property type="gene ID" value="BROFUL_00237"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014027">
        <property type="entry name" value="UDP-Glc/GDP-Man_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036220">
        <property type="entry name" value="UDP-Glc/GDP-Man_DH_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03720">
        <property type="entry name" value="UDPG_MGDP_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00984">
        <property type="entry name" value="UDPG_MGDP_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52413">
        <property type="entry name" value="SSF52413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UDPG_MGDP_dh_C" evidence="1">
        <location>
            <begin position="1"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21036.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="83" mass="9434" checksum="34ECD849200F9AF0" modified="2015-11-11" version="1">MNILRAKGAKITYTDPYIQEIAYQKLSMKSKPLSKEVLSRTDCAVIVTDHSNFDYNLIVANSKLIVDTRNALKGIQKKHIVRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1N0</accession>
    <name>A0A0M2V1N0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_00213</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the MscS (TC 1.A.23) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000026">
        <property type="protein sequence ID" value="KKO21056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21056">
        <property type="protein sequence ID" value="KKO21056"/>
        <property type="gene ID" value="BROFUL_00213"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.259"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010920">
        <property type="entry name" value="LSM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006685">
        <property type="entry name" value="MscS_channel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011066">
        <property type="entry name" value="MscS_channel_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011014">
        <property type="entry name" value="MscS_channel_TM-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023408">
        <property type="entry name" value="MscS_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00924">
        <property type="entry name" value="MS_channel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50182">
        <property type="entry name" value="SSF50182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82689">
        <property type="entry name" value="SSF82689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82861">
        <property type="entry name" value="SSF82861"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0732">Signal</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="9">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644255" evidence="9">
        <location>
            <begin position="44"/>
            <end position="1244"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="668"/>
            <end position="688"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="694"/>
            <end position="713"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="740"/>
            <end position="761"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="767"/>
            <end position="784"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="804"/>
            <end position="829"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="835"/>
            <end position="860"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="892"/>
            <end position="914"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="959"/>
            <end position="979"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="1007"/>
            <end position="1026"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="1032"/>
            <end position="1061"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="7">
        <location>
            <begin position="140"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="7">
        <location>
            <begin position="284"/>
            <end position="362"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO21056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="1244" mass="142536" checksum="6992EB1C989A5CF4" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1N6</accession>
    <name>A0A0M2V1N6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00718</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000089">
        <property type="protein sequence ID" value="KKO20599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20599">
        <property type="protein sequence ID" value="KKO20599"/>
        <property type="gene ID" value="BROFUL_00718"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="314" mass="36510" checksum="360B35DA325A2721" modified="2015-11-11" version="1">MLKYHFHFFPVAISFLLGPLSLPVFSQNFIVNGVLERQDHAMDVKDAIVRKKTLLVKDKRIYIQIVLDEGARNITNHKRYKEMSYLLPKEIVYDETARRIFYYTDNAEIEIGREKSFLGFMSYIALADGVTIIGSPTDAKLLISLNTDYKGMPHSVIHSEEEMEITLKKKCGQCHILEYIFSHENWVEEDILHAFNRLQMGNEERFTPDEQKIIDLFKKYQKGEIDKGKLSEFKSLKEIGTKDVAAFAEGVYMNNCVPCHNPSKMADVSLLYTKRRCKSIVDRMKEKEPSLFLQKDLDSLASYLWEIKLRPYGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1T7</accession>
    <name>A0A0M2V1T7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">Glucose-1-phosphate thymidylyltransferase</fullName>
            <ecNumber evidence="4 5">2.7.7.24</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BROFUL_00602</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>alpha-D-glucose 1-phosphate + dTTP + H(+) = diphosphate + dTDP-alpha-D-glucose</text>
            <dbReference type="Rhea" id="RHEA:15225"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37568"/>
            <dbReference type="ChEBI" id="CHEBI:57477"/>
            <dbReference type="ChEBI" id="CHEBI:58601"/>
            <dbReference type="EC" id="2.7.7.24"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 5">Belongs to the glucose-1-phosphate thymidylyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.24" evidence="4 5"/>
    <dbReference type="EMBL" id="LAQJ01000083">
        <property type="protein sequence ID" value="KKO20674.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20674">
        <property type="protein sequence ID" value="KKO20674"/>
        <property type="gene ID" value="BROFUL_00602"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.758"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008879">
        <property type="term" value="F:glucose-1-phosphate thymidylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045226">
        <property type="term" value="P:extracellular polysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02538">
        <property type="entry name" value="G1P_TT_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005907">
        <property type="entry name" value="G1P_thy_trans_s"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005835">
        <property type="entry name" value="NTP_transferase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43532">
        <property type="entry name" value="PTHR43532"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00483">
        <property type="entry name" value="NTP_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01207">
        <property type="entry name" value="rmlA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NTP_transferase" evidence="6">
        <location>
            <begin position="2"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001095"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010480"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO20674.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="289" mass="32201" checksum="58651C8EDDD7A02E" modified="2015-11-11" version="1">MKGIVLAGGRATRLYPVTKAVCKQLLPVYDKPMIYYPLSVLMLAGIRDILIISSPEALPRFRDLLGDGTDYGIDLRYAEQCKPRGLADAFLVGEHFIGNDKVCLVLGDNIFFGHGLSEMLKAAALGKEGATVFGYYVKDPQRYGVIEFDKDHQAISIEEKPAQPRSHWAVTGLYFYDNAVVGLAKDVKPSKRGELEITDINNAYLLKKQLNVQLMGRGYAWLDTGTYDSLIDASLFIKTIEERQGLKIGCIEEVAYRMGFINAGQVNKLASQINTSYGEYLKKILLEEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V247</accession>
    <name>A0A0M2V247_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ABC transporter ATP-binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_00491</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000066">
        <property type="protein sequence ID" value="KKO20789.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20789">
        <property type="protein sequence ID" value="KKO20789"/>
        <property type="gene ID" value="BROFUL_00491"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.614"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="34"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="77"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="147"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="176"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="256"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="37"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="357"/>
            <end position="590"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="390"/>
            <end position="397"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO20789.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="600" mass="67963" checksum="7F07596F82D89E18" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V258</accession>
    <name>A0A0M2V258_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00460</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000061">
        <property type="protein sequence ID" value="KKO20804.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20804">
        <property type="protein sequence ID" value="KKO20804"/>
        <property type="gene ID" value="BROFUL_00460"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20804.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="91" mass="10292" checksum="651D0B74FAB4B02F" modified="2015-11-11" version="1" fragment="single">RLDGRRILQNVSSSSIFHSAAQPQPNFLYESGEIASEKALAMTPAMHFDGTLHVVIASEAKQSFTHKKRYLLKGVCEKTHRKKKFLYSNTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2F0</accession>
    <name>A0A0M2V2F0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00395</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000052">
        <property type="protein sequence ID" value="KKO20879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20879">
        <property type="protein sequence ID" value="KKO20879"/>
        <property type="gene ID" value="BROFUL_00395"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="95" mass="10399" checksum="5C8F1F1C9BB226E3" modified="2015-11-11" version="1">MSARAGCSIEDMFDNRWFDFWDFPYLAFLGGNTFVRFTERDTASLAGLGFVGNGLRDLAWQGHDTGFARTTFLSARLSAGGTTFGNASFLKGVIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V3L4</accession>
    <name>A0A0M2V3L4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Site-specific DNA-methyltransferase (adenine-specific)</fullName>
            <ecNumber evidence="2">2.1.1.72</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_00007</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 2'-deoxyadenosine in DNA + S-adenosyl-L-methionine = an N(6)-methyl-2'-deoxyadenosine in DNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:15197"/>
            <dbReference type="Rhea" id="RHEA-COMP:12418"/>
            <dbReference type="Rhea" id="RHEA-COMP:12419"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:90615"/>
            <dbReference type="ChEBI" id="CHEBI:90616"/>
            <dbReference type="EC" id="2.1.1.72"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.72" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000003">
        <property type="protein sequence ID" value="KKO21254.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21254">
        <property type="protein sequence ID" value="KKO21254"/>
        <property type="gene ID" value="BROFUL_00007"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008170">
        <property type="term" value="F:N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009007">
        <property type="term" value="F:site-specific DNA-methyltransferase (adenine-specific) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.30">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022749">
        <property type="entry name" value="D12N6_MeTrfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003356">
        <property type="entry name" value="DNA_methylase_A-5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038333">
        <property type="entry name" value="T1MK-like_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12161">
        <property type="entry name" value="HsdM_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02384">
        <property type="entry name" value="N6_Mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HsdM_N" evidence="4">
        <location>
            <begin position="11"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="domain" description="N6_Mtase" evidence="3">
        <location>
            <begin position="138"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF12161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO21254.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="179" mass="19768" checksum="9D45F4791F6631D2" modified="2015-11-11" version="1" fragment="single">MAIKKSELYGSLWASCDELRGGMDASQYKDYVLVLLFIKYISDKYAGVPYAPITVPKGASFQDMVALKGKPTIGDDINKKIIRKIAEANKLTGTIDVADFNSADKLGSGKEMVDRLSNLIAIFENPALDFSKNRAEGDDILGDAYEYLMRHFATESGKSKGQFYTPAEVSRIMAKIITF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UP87</accession>
    <name>A0A0M2UP87_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Iron-sulfur cofactor synthesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03394</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17943">
        <property type="protein sequence ID" value="KKO17943"/>
        <property type="gene ID" value="BROFUL_03394"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4172"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06664">
        <property type="entry name" value="IscU_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017787">
        <property type="entry name" value="NIF_FeS_clus_asmbl_NifU-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002871">
        <property type="entry name" value="NIF_FeS_clus_asmbl_NifU_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10093">
        <property type="entry name" value="PTHR10093"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01592">
        <property type="entry name" value="NifU_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03419">
        <property type="entry name" value="NifU_clost"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NifU_N" evidence="1">
        <location>
            <begin position="2"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO17943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="141" mass="15123" checksum="194D07461172DFC6" modified="2015-11-11" version="1">MQYSAKVMDHFANPRNVGEFSDADGVGEVGNPACGDIMRMSIKVKDNVIVDVKFKTFGCGAAIATSSISTEMIKGKTLDEALQLTNKAVAEALDGLPPAKMHCSVLAEEAIEAAIDDYLKKTTGKGLEKKKQHAHDDHHGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UPS4</accession>
    <name>A0A0M2UPS4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03408</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000312">
        <property type="protein sequence ID" value="KKO17897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17897">
        <property type="protein sequence ID" value="KKO17897"/>
        <property type="gene ID" value="BROFUL_03408"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17897.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="33" mass="3925" checksum="E6ED39B83D0DE7B8" modified="2015-11-11" version="1">MENKIKWKEKMDMAISRARSENKPVLLDFFNPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQ93</accession>
    <name>A0A0M2UQ93_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Phosphate ABC transporter ATP-binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_03047</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000283">
        <property type="protein sequence ID" value="KKO18258.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18258">
        <property type="protein sequence ID" value="KKO18258"/>
        <property type="gene ID" value="BROFUL_03047"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3760"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005315">
        <property type="term" value="F:inorganic phosphate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035435">
        <property type="term" value="P:phosphate ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03260">
        <property type="entry name" value="ABC_PstB_phosphate_transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005670">
        <property type="entry name" value="Phosp_transpt1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43423">
        <property type="entry name" value="PTHR43423"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00972">
        <property type="entry name" value="3a0107s01c2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="13"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="45"/>
            <end position="52"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18258.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="260" mass="29176" checksum="5EF3F231A8DCA3AE" modified="2015-11-11" version="1">MERARITVSEPIVNIIDLSLHYGKTKALKNINLDISKKKITSFIGPSGCGKSTLIRCLNRMNDLIDSVKIEGSIKIDGQDIYAPAVDVTELRKKVGMVFQKPNPFPKTIYENVVYGPRVQGINKKSALDELCENALKKAALWDEVKDRLRVNALDLSGGQQQRICIARAIATEPEIILLDEPCSALDPIATAKIEDMLVELKKDYTVIIVTHNMQQAARISDYTGFFMLGELIEFNITTDIFTNRGKNRQRIILREGLDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQC3</accession>
    <name>A0A0M2UQC3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Chloride channel protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BROFUL_03230</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000295">
        <property type="protein sequence ID" value="KKO18082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18082">
        <property type="protein sequence ID" value="KKO18082"/>
        <property type="gene ID" value="BROFUL_03230"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3976"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008324">
        <property type="term" value="F:cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005247">
        <property type="term" value="F:voltage-gated chloride channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006813">
        <property type="term" value="P:potassium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014743">
        <property type="entry name" value="Cl-channel_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001807">
        <property type="entry name" value="Cl-channel_volt-gated"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006037">
        <property type="entry name" value="RCK_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036721">
        <property type="entry name" value="RCK_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02080">
        <property type="entry name" value="TrkA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00654">
        <property type="entry name" value="Voltage_CLC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00762">
        <property type="entry name" value="CLCHANNEL"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF116726">
        <property type="entry name" value="SSF116726"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81340">
        <property type="entry name" value="SSF81340"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51202">
        <property type="entry name" value="RCK_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0129">CBS domain</keyword>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="28"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="79"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="104"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="171"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="207"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="245"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="281"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="318"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="351"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="378"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="411"/>
            <end position="429"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="8">
        <location>
            <begin position="464"/>
            <end position="522"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="8">
        <location>
            <begin position="528"/>
            <end position="586"/>
        </location>
    </feature>
    <feature type="domain" description="RCK C-terminal" evidence="7">
        <location>
            <begin position="595"/>
            <end position="676"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO18082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="680" mass="73901" checksum="3CB4C221BDA13FC0" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQM4</accession>
    <name>A0A0M2UQM4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03353</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000307">
        <property type="protein sequence ID" value="KKO17955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17955">
        <property type="protein sequence ID" value="KKO17955"/>
        <property type="gene ID" value="BROFUL_03353"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="56" mass="6828" checksum="11B8C18E90F64BA2" modified="2015-11-11" version="1">MHTPSRQMLRPYLFKKLKCYKVLCFELWVEVRCWKLEVGVESYELCVRECVIAPLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQN0</accession>
    <name>A0A0M2UQN0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_02909</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Encapsulin nanocompartment</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the encapsulin family. Family 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18403">
        <property type="protein sequence ID" value="KKO18403"/>
        <property type="gene ID" value="BROFUL_02909"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007544">
        <property type="entry name" value="Linocin_M18"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04454">
        <property type="entry name" value="Linocin_M18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1284">Encapsulin nanocompartment</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644098" evidence="5">
        <location>
            <begin position="35"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="78"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00033738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00033743"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00033787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="372" mass="40860" checksum="5F694C517867E7BF" modified="2015-11-11" version="1">MKIYKNFCKKYQFIGIFTLSALFYLPQNASPVYAKCTKENDCFSCHSSQELRNVHKDCQYLNQGCLACHAVPKNLAASSNDSCSGKGSCGEEKGGGGKGGSSEREMGREDWEKLQRHVHETIEKCLVGRKFLETYGPLGVGSQCVSIDTFGLPSWATVDMLGEADNAIHSLKRDVAHIPVIYKDFWLFWRDLEASKKGEIPLDTSAAIGAAVATAAREDDLVFNGLPDMNMAGLLNVNGRNIMKLSDWSAIGNGFQDVVAAVEKLRNTGFFPPYTLVVSPRLYALLHKVYERTGKLEIDAVKEMVKGGVYQSPVLKKDVALVMAAGRQNADLAVGGNFKVEYCGPENLNHRFRVVGSSVLRIKCPQAICTLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQQ3</accession>
    <name>A0A0M2UQQ3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03095</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000286">
        <property type="protein sequence ID" value="KKO18197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18197">
        <property type="protein sequence ID" value="KKO18197"/>
        <property type="gene ID" value="BROFUL_03095"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3822"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="83" mass="9781" checksum="80BB93B229EEC5A1" modified="2015-11-11" version="1">MITDTEIRLKGLKILTEFLGDVEAERFISLIQREPFDYTKWRQGLDEDLSIEEISKRAMAIRKKNSILVKYNFYKGVLASRQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQU9</accession>
    <name>A0A0M2UQU9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Dihydropteroate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_03303</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000301">
        <property type="protein sequence ID" value="KKO18025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18025">
        <property type="protein sequence ID" value="KKO18025"/>
        <property type="gene ID" value="BROFUL_03303"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4071"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004156">
        <property type="term" value="F:dihydropteroate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009396">
        <property type="term" value="P:folic acid-containing compound biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00739">
        <property type="entry name" value="DHPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045031">
        <property type="entry name" value="DHP_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006390">
        <property type="entry name" value="DHP_synth_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011005">
        <property type="entry name" value="Dihydropteroate_synth-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000489">
        <property type="entry name" value="Pterin-binding_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20941">
        <property type="entry name" value="PTHR20941"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00809">
        <property type="entry name" value="Pterin_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51717">
        <property type="entry name" value="SSF51717"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01496">
        <property type="entry name" value="DHPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00793">
        <property type="entry name" value="DHPS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50972">
        <property type="entry name" value="PTERIN_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pterin-binding" evidence="1">
        <location>
            <begin position="45"/>
            <end position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="306" mass="33376" checksum="EFD547DB7F0065F3" modified="2015-11-11" version="1">MRDVAIMDTPLPKSGQTIQDRPDNLKRGCFDVPYPQGILNLGTKTYVMGILNVTPDSFYDGKRYATHESAVEHALDMVNCGADIIDVGGESTRPGASPVTETEEITRVIPLIKLLSKRIRAPISIDTYKAAVAERAIDAGASIINDIGGLRMDKEMARVAAVSQVPVIIMHKKGSTRTMQKYPLRKNACAEIRSFLKKSISLAVSAGVKRERIIVDPGIGFGKTVQQNLEILRRLREFASLGFPVMVGTSRKKFIGAVLDLPVHERLYGTLATLAVAVMNGAHMVRVHDVREAAQVVTLCDAIGNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQW1</accession>
    <name>A0A0M2UQW1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Phosphate-specific transport system accessory protein PhoU</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03046</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Plays a role in the regulation of phosphate uptake.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the PhoU family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000283">
        <property type="protein sequence ID" value="KKO18257.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18257">
        <property type="protein sequence ID" value="KKO18257"/>
        <property type="gene ID" value="BROFUL_03046"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3759"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030643">
        <property type="term" value="P:cellular phosphate ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045936">
        <property type="term" value="P:negative regulation of phosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006817">
        <property type="term" value="P:phosphate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028366">
        <property type="entry name" value="P_transport_PhoU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038078">
        <property type="entry name" value="PhoU-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026022">
        <property type="entry name" value="PhoU_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42930">
        <property type="entry name" value="PTHR42930"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01895">
        <property type="entry name" value="PhoU"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003107">
        <property type="entry name" value="PhoU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02135">
        <property type="entry name" value="phoU_full"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1" id="KW-0592">Phosphate transport</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="PhoU" evidence="2">
        <location>
            <begin position="18"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="domain" description="PhoU" evidence="2">
        <location>
            <begin position="120"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR003107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18257.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="221" mass="25210" checksum="AE0AC6DE55ADCD48" modified="2015-11-11" version="1">MAREAYHKALKHLEDEVLQMGNMVADAIRKSVEALKKRDTNASGEIVKNDLLINKKRFDIEEKCISLIATQQPMAVDLRELASILSIITDLERMGDHAEGIAKINILLGKEPLVKPLIDIPRMADIGLSMLDTCLKAFLQRDIEMARLVCSEDDQVDALHDQIYRELLLLMMENPKIIHMATYLIWVSHNLERIADRVTNIAERIVFMVTGKMEEINVSKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UQW5</accession>
    <name>A0A0M2UQW5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_03263</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000299">
        <property type="protein sequence ID" value="KKO18040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18040">
        <property type="protein sequence ID" value="KKO18040"/>
        <property type="gene ID" value="BROFUL_03263"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4024"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018752">
        <property type="entry name" value="DabA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38344">
        <property type="entry name" value="PTHR38344"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10070">
        <property type="entry name" value="MpsB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="173" mass="19813" checksum="C7B1DFF659B6FAFC" modified="2015-11-11" version="1">MTSYNYTVDPEGKFLRNILGAVGPVCAGINLEYYFSFIDNEHYGCGTKLPHNITSLVGVMNGHYSDLQLGLPWQMVELHEPIRLILLVCCKVETMETILGEAFGYTGQPGHFQCLVKHNWITLAIHDQEQEKLFLWKEGRFVPFEETADVPKYKGDDQRFFLEQGHLLFGQII</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR55</accession>
    <name>A0A0M2UR55_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_03212</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000293">
        <property type="protein sequence ID" value="KKO18110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18110">
        <property type="protein sequence ID" value="KKO18110"/>
        <property type="gene ID" value="BROFUL_03212"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3958"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="198"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="domain" description="Methyltransf_11" evidence="2">
        <location>
            <begin position="49"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="243" mass="28424" checksum="3C0C1997C749FCDA" modified="2015-11-11" version="1">MIEKIKHALRKEQFQPGILALFFNPYYFSRKGLFRHISLWAPHITGRTLDVGCGTKPYEKLFLSTTSYIGLELDAVANRKNKKADYFYNGTTFPFQNDEFDSVIVNEVLEHVFRPSDFLSEIYRVLKPNGILLMTVPFVWDEHEQPFDYARYSSFGLKYLLEKSGFEVIECRKSISDIRVIFQLLNCYIYKKTLTKNVFVNLFTTFFLMSPFTILGELLSKVLPKNEDLYLDSVVLLKKKKTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UR82</accession>
    <name>A0A0M2UR82_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02710</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000251">
        <property type="protein sequence ID" value="KKO18593.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18593">
        <property type="protein sequence ID" value="KKO18593"/>
        <property type="gene ID" value="BROFUL_02710"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3352"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="485" mass="55595" checksum="94D3428AB28C6815" modified="2015-11-11" version="1">MKHHHHCMFTLIFVIFFTGCGTASKPKLIKKEKIYGTDGEGLSIFHRIAERDGGLGLKFPGFIISIEKAYREKIRKKDYKKNSPDFESINNEHFQGNTSYQKSVSRILDDRKRTFISHLVEYRMDQYKGYIREDFFYNAYDKCFDTKTEDVYLKGLLKLDELRNRIFMNDSETPYTHIFLYCMGWNTDQQESVRNYNSLFSQIIKAHTEGAPFRPLFIGISWPSEWRSQFLGGFISAISYGAKADDADEVGLMWVNKILWNILAPLKRAKRIPLIVVGHSFGARVVTRAVFSNGLIDIPAGEKGLPAVSEAAEDIDLVVGLQGAFSIRRFIPEDGKEGSPYGDFARNRYAKKFVFTWSEHDFANPIAKFFTGASHIGGRYGHEVSLDHQDIFNHYTIEVKEDACNYDVTVREIQREMGGKIKDEEQLGWNESFRHPEKISIVDASALIKNKPYGKGGNAHSDIYTPGVAHFLWNCIHNIENIQSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URB2</accession>
    <name>A0A0M2URB2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02918</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18412.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18412">
        <property type="protein sequence ID" value="KKO18412"/>
        <property type="gene ID" value="BROFUL_02918"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18412.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="45" mass="5222" checksum="94B12ECC3B3A62D8" modified="2015-11-11" version="1">MQDHLWKVFIGGIVVLTVGYLVYFLKIVVEYMKEATLGLTIFYPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URG2</accession>
    <name>A0A0M2URG2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">F0F1 ATP synthase epsilon subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02840</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000268">
        <property type="protein sequence ID" value="KKO18457.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18457">
        <property type="protein sequence ID" value="KKO18457"/>
        <property type="gene ID" value="BROFUL_02840"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036771">
        <property type="entry name" value="ATPsynth_dsu/esu_N"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18457.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="70" mass="7742" checksum="AB28CE78C7E32DEA" modified="2015-11-11" version="1">MDRGFLEVMANNVVVLTDACVKEGEVNVEKIRTEKDAAEKSLSGAVAVEEKEKAQAIIRRANIWLKLANK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URP5</accession>
    <name>A0A0M2URP5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Molybdopterin oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_03037</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18310.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18310">
        <property type="protein sequence ID" value="KKO18310"/>
        <property type="gene ID" value="BROFUL_03037"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043546">
        <property type="term" value="F:molybdopterin cofactor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006657">
        <property type="entry name" value="MoPterin_dinucl-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006656">
        <property type="entry name" value="Mopterin_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006963">
        <property type="entry name" value="Mopterin_OxRdtase_4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04879">
        <property type="entry name" value="Molybdop_Fe4S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00384">
        <property type="entry name" value="Molybdopterin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01568">
        <property type="entry name" value="Molydop_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00926">
        <property type="entry name" value="Molybdop_Fe4S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="SSF50692"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51669">
        <property type="entry name" value="4FE4S_MOW_BIS_MGD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="2 4" id="KW-0408">Iron</keyword>
    <keyword evidence="3 4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S Mo/W bis-MGD-type" evidence="5">
        <location>
            <begin position="3"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="10"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="13"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="17"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="45"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18310.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="702" mass="77820" checksum="5E48134C0BB99046" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2URS1</accession>
    <name>A0A0M2URS1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MOSC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02548</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18768.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18768">
        <property type="protein sequence ID" value="KKO18768"/>
        <property type="gene ID" value="BROFUL_02548"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3163"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030151">
        <property type="term" value="F:molybdenum ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005302">
        <property type="entry name" value="MoCF_Sase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011037">
        <property type="entry name" value="Pyrv_Knase-like_insert_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03473">
        <property type="entry name" value="MOSC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50800">
        <property type="entry name" value="SSF50800"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51340">
        <property type="entry name" value="MOSC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MOSC" evidence="1">
        <location>
            <begin position="17"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51340"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18768.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="153" mass="16531" checksum="DE7FCEBBA68454C5" modified="2015-11-11" version="1">MGKIVAVCISEKKGTQKRDVGAGRLIEHFGLEGDAHAGKWHRQVSLLARESADIMREKGLKIKDGDFGENIVTEGIELKSLPIGTILKIGNGITIRVTQIGKLCHDRCAIYYTAGDCIMPREGIFGEILTGGTIQAGDEIEILEQGAERAAKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2US60</accession>
    <name>A0A0M2US60_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02387</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000228">
        <property type="protein sequence ID" value="KKO18908.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18908">
        <property type="protein sequence ID" value="KKO18908"/>
        <property type="gene ID" value="BROFUL_02387"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2967"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026350">
        <property type="entry name" value="GxxExxY"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13366">
        <property type="entry name" value="PDDEXK_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04256">
        <property type="entry name" value="GxxExxY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18908.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="124" mass="14029" checksum="5A96D1CA251227C8" modified="2015-11-11" version="1">MHDDLTSQIISSAFEVHNTLGSGFLEKVYENALLVELREKGLKAESQRPATVLYKDRNVGEYFADIIVENKVVLELKALEKIGDIHEIQLKNYLKATGIEVGLLINFGKSVEVKRKYVKNPEIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USG9</accession>
    <name>A0A0M2USG9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02505</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000235">
        <property type="protein sequence ID" value="KKO18782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18782">
        <property type="protein sequence ID" value="KKO18782"/>
        <property type="gene ID" value="BROFUL_02505"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007922">
        <property type="entry name" value="DUF721/UPF0232"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05258">
        <property type="entry name" value="DciA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="116" mass="13363" checksum="5779C5037B27491B" modified="2015-11-11" version="1">MLGELPERYFFNKRSAVKVGQVLKGLFPKKSSGDKIFQEVRAAWKDVVGEEVSRCTEIVDLKRGVLYVTVESTVLIHHLTSFEKDAIIAKIHELTCIKYVHDIRFKVGMLNNDRRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USI2</accession>
    <name>A0A0M2USI2_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_03397</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000310">
        <property type="protein sequence ID" value="KKO17946.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17946">
        <property type="protein sequence ID" value="KKO17946"/>
        <property type="gene ID" value="BROFUL_03397"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030296">
        <property type="entry name" value="MlaF/Mkl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43023:SF6">
        <property type="entry name" value="PTHR43023:SF6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="6"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="38"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO17946.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="247" mass="27206" checksum="58D1A7928F46A627" modified="2015-11-11" version="1">MSKVIIEFKDVYKSFNGLLVHNGINLSILEGEIMSLLGGSGSGKSVMLKELIGLIRPDKGDIIVFGKNVTQMKENELFQLREHIGLLFQGAALFDSLTVSQNIAYPLREHLHLTEKEIQERVDEKLKLVGLSGIGSKMPAELSGGMKKRVGLARAIATEPDIILYDEPTTGLDPMTAQRINELILELQRKLGVTTIVVTHDLHCVRMVSDRIAMLHEGKIVMVGTWEELAASGIQTVKDFISGTICD</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USK1</accession>
    <name>A0A0M2USK1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Universal stress protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02478</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal stress protein A family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000233">
        <property type="protein sequence ID" value="KKO18817.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18817">
        <property type="protein sequence ID" value="KKO18817"/>
        <property type="gene ID" value="BROFUL_02478"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3077"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006015">
        <property type="entry name" value="Universal_stress_UspA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006016">
        <property type="entry name" value="UspA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00582">
        <property type="entry name" value="Usp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01438">
        <property type="entry name" value="UNVRSLSTRESS"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Usp" evidence="2">
        <location>
            <begin position="4"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008791"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18817.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="154" mass="17364" checksum="252B248EC3904EEA" modified="2015-11-11" version="1">MMKIEKILFPTDFSVCSKYALKYALDFATERGAKLYILNVIPKLNIPIGSGGATFPVSKFYADMEREAKKNIHRLIPRRFLEKIKIENIIVRGTPFQEIIKAAKKYDIDLITIATHGRTGISHALLGSTAEKVVRTASCPVLCVRYPEREPVQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USP0</accession>
    <name>A0A0M2USP0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative phosphatidate cytidylyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02672</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000246">
        <property type="protein sequence ID" value="KKO18615.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18615">
        <property type="protein sequence ID" value="KKO18615"/>
        <property type="gene ID" value="BROFUL_02672"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004143">
        <property type="term" value="F:diacylglycerol kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037997">
        <property type="entry name" value="Dgk1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31303">
        <property type="entry name" value="PTHR31303"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="264"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="286"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="325"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="351"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="389"/>
            <end position="412"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="424"/>
            <end position="442"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18615.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="443" mass="49901" checksum="F07AF46B05064BEF" modified="2015-11-11" version="1">MLPITPQKRNKITYPNSLPLHFHGKKLVVMDVDGVLFKGQFILHVARSLGIWVYIRTALLCFLFHMEKISIHELITRVYMRFQGVSLGQAQRIYENIPLIRYARETIETLRTHGYLIVLISRGVPDLFVKDLAARLSANYGYGLEIGTDNGRLTGTVLGQLLRPGGKKIFIEEILRKNNLSWQNTIVLVDDRNNIDIMKHAAVIIGVNAHYAVRQRAQYLIDSGDLSEMLDIMDIEDADSYKTLFAGMRKQFAHFWYQEIRRKLLHILIAFAPVCAFFIYHTTLTVLFSLLIIYFVSECLRVNGYSFPLFGGITRSSIRKLEERGFAFGPITLVLGACFSLLFFSNSLASTVIWIVAFADTAAAIVGMRLGNHRIPYNIKKSVEGSLAAWAVAFVCGWIYLPLLPALITAFFSSIIESLPLRSLDNLLIPLGAGIVLSCLGYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USR4</accession>
    <name>A0A0M2USR4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02652</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000242">
        <property type="protein sequence ID" value="KKO18645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18645">
        <property type="protein sequence ID" value="KKO18645"/>
        <property type="gene ID" value="BROFUL_02652"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008203">
        <property type="entry name" value="AF2212-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024069">
        <property type="entry name" value="AF2212-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01954">
        <property type="entry name" value="DUF104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="79" mass="9325" checksum="7951FF0B8AEC6931" modified="2015-11-11" version="1">MSKVIDAIFENGVFKPLQHIEVKEHEKVAIKIISLDDWQNRFNRIIGKIHITTKQYTPEEIESDISHAIEEVRKEKRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USR7</accession>
    <name>A0A0M2USR7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_03264</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000299">
        <property type="protein sequence ID" value="KKO18041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18041">
        <property type="protein sequence ID" value="KKO18041"/>
        <property type="gene ID" value="BROFUL_03264"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4025"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018752">
        <property type="entry name" value="DabA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38344">
        <property type="entry name" value="PTHR38344"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10070">
        <property type="entry name" value="MpsB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO18041.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="693" mass="79979" checksum="D295100FE45D4AF5" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UST6</accession>
    <name>A0A0M2UST6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 10">L-aspartate oxidase</fullName>
            <ecNumber evidence="4 10">1.4.3.16</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BROFUL_02621</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the oxidation of L-aspartate to iminoaspartate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>L-aspartate + O2 = H2O2 + iminosuccinate</text>
            <dbReference type="Rhea" id="RHEA:25876"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:77875"/>
            <dbReference type="EC" id="1.4.3.16"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="9">
            <dbReference type="Rhea" id="RHEA:25877"/>
        </physiologicalReaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 10">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2 10">Cofactor biosynthesis; NAD(+) biosynthesis; iminoaspartate from L-aspartate (oxidase route): step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the FAD-dependent oxidoreductase 2 family. NadB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.4.3.16" evidence="4 10"/>
    <dbReference type="EMBL" id="LAQJ01000240">
        <property type="protein sequence ID" value="KKO18670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18670">
        <property type="protein sequence ID" value="KKO18670"/>
        <property type="gene ID" value="BROFUL_02621"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3249"/>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00326"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008734">
        <property type="term" value="F:L-aspartate oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044318">
        <property type="term" value="F:L-aspartate:fumarate oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.700.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003953">
        <property type="entry name" value="FAD-binding_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037099">
        <property type="entry name" value="Fum_R/Succ_DH_flav-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015939">
        <property type="entry name" value="Fum_Rdtase/Succ_DH_flav-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005288">
        <property type="entry name" value="NadB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027477">
        <property type="entry name" value="Succ_DH/fumarate_Rdtase_cat_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42716">
        <property type="entry name" value="PTHR42716"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00890">
        <property type="entry name" value="FAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02910">
        <property type="entry name" value="Succ_DH_flav_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46977">
        <property type="entry name" value="SSF46977"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56425">
        <property type="entry name" value="SSF56425"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00551">
        <property type="entry name" value="nadB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0274">FAD</keyword>
    <keyword evidence="5 10" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8 10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6 10" id="KW-0662">Pyridine nucleotide biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD_binding_2" evidence="11">
        <location>
            <begin position="44"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="domain" description="Succ_DH_flav_C" evidence="12">
        <location>
            <begin position="464"/>
            <end position="553"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004950"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00029281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU362049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00890"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF02910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="KKO18670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="557" mass="62175" checksum="03DD9FCB1D64BFF1" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USV2</accession>
    <name>A0A0M2USV2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="12 13 14">UvrABC system protein B</fullName>
            <shortName evidence="13">Protein UvrB</shortName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">Excinuclease ABC subunit B</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">uvrB</name>
        <name evidence="19" type="ORF">BROFUL_03247</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10 13">The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11 13 14">Forms a heterotetramer with UvrA during the search for lesions. Interacts with UvrC in an incision complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 13 14">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="13">The beta-hairpin motif is involved in DNA binding.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 13 14">Belongs to the UvrB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000296">
        <property type="protein sequence ID" value="KKO18076.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18076">
        <property type="protein sequence ID" value="KKO18076"/>
        <property type="gene ID" value="BROFUL_03247"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.4003"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009380">
        <property type="term" value="C:excinuclease repair complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009381">
        <property type="term" value="F:excinuclease ABC activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006289">
        <property type="term" value="P:nucleotide-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00204">
        <property type="entry name" value="UvrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006935">
        <property type="entry name" value="Helicase/UvrB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001943">
        <property type="entry name" value="UVR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036876">
        <property type="entry name" value="UVR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004807">
        <property type="entry name" value="UvrB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041471">
        <property type="entry name" value="UvrB_inter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024759">
        <property type="entry name" value="UvrB_YAD/RRR_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24029">
        <property type="entry name" value="PTHR24029"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04851">
        <property type="entry name" value="ResIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02151">
        <property type="entry name" value="UVR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12344">
        <property type="entry name" value="UvrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17757">
        <property type="entry name" value="UvrB_inter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46600">
        <property type="entry name" value="SSF46600"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00631">
        <property type="entry name" value="uvrb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50151">
        <property type="entry name" value="UVR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 13" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="15" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3 13" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 13 14" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6 13 14" id="KW-0228">DNA excision</keyword>
    <keyword evidence="9 13 14" id="KW-0234">DNA repair</keyword>
    <keyword evidence="8 13 14" id="KW-0267">Excision nuclease</keyword>
    <keyword evidence="4 13" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="13 14" id="KW-0742">SOS response</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="17">
        <location>
            <begin position="25"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="18">
        <location>
            <begin position="429"/>
            <end position="591"/>
        </location>
    </feature>
    <feature type="domain" description="UVR" evidence="16">
        <location>
            <begin position="619"/>
            <end position="654"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="15">
        <location>
            <begin position="262"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Beta-hairpin" evidence="13">
        <location>
            <begin position="91"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <begin position="38"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00025647"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00026033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00029504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU003587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS50151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="KKO18076.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="654" mass="75556" checksum="37CEADC35917D731" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USW4</accession>
    <name>A0A0M2USW4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03234</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000295">
        <property type="protein sequence ID" value="KKO18086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18086">
        <property type="protein sequence ID" value="KKO18086"/>
        <property type="gene ID" value="BROFUL_03234"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3984"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025245">
        <property type="entry name" value="DUF4197"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13852">
        <property type="entry name" value="DUF4197"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="233" mass="25515" checksum="E2B8BBD29B1843C8" modified="2015-11-11" version="1">MLVVMLTVGTAYGGFLSDLFKKGGTAASKVKLDESTVTAGIKEALSLATDKTVTSLSSLDGYFANKSVKIVMPEKIQKVADTLGKFGFQRQVDDFVLSMNRAAEKAAPVAREHFVDAIKQMTVKDARKILEGGDTAATDFFREKTYNKLYDSFKPTISDSMDHVGVTNYYKDMMGKFTAIPFMNAASVDLDDYVTNEALDGLFHMVGEEEKKIRKDPAARVTDLLKEVFGGAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USW6</accession>
    <name>A0A0M2USW6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 3">Flagellar hook protein FlgE</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">flgE_1</name>
        <name evidence="7" type="ORF">BROFUL_02121</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Bacterial flagellum basal body</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the flagella basal body rod proteins family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19138">
        <property type="protein sequence ID" value="KKO19138"/>
        <property type="gene ID" value="BROFUL_02121"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009425">
        <property type="term" value="C:bacterial-type flagellum basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.98.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011491">
        <property type="entry name" value="Falgellar_hook_FlgE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037058">
        <property type="entry name" value="Falgellar_hook_FlgE_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001444">
        <property type="entry name" value="Flag_bb_rod_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020013">
        <property type="entry name" value="Flagellar_FlgE/F/G"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010930">
        <property type="entry name" value="Flg_bb/hook_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037925">
        <property type="entry name" value="FlgE/F/G-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07559">
        <property type="entry name" value="FlaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00460">
        <property type="entry name" value="Flg_bb_rod"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06429">
        <property type="entry name" value="Flg_bbr_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117143">
        <property type="entry name" value="SSF117143"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03506">
        <property type="entry name" value="FlgEFG_subfam"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="7" id="KW-0966">Cell projection</keyword>
    <keyword evidence="7" id="KW-0969">Cilium</keyword>
    <keyword evidence="7" id="KW-0282">Flagellum</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flg_bb_rod" evidence="4">
        <location>
            <begin position="7"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="domain" description="FlaE" evidence="6">
        <location>
            <begin position="300"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="domain" description="Flg_bbr_C" evidence="5">
        <location>
            <begin position="448"/>
            <end position="526"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00019015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU362116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF06429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF07559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="528" mass="55268" checksum="EBEB9FEB0A7D4A19" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2USX4</accession>
    <name>A0A0M2USX4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Flagellar assembly factor FliW</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">fliW</name>
        <name evidence="4" type="ORF">BROFUL_02131</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Interacts with translational regulator CsrA and flagellin(s).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the FliW family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000213">
        <property type="protein sequence ID" value="KKO19148.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19148">
        <property type="protein sequence ID" value="KKO19148"/>
        <property type="gene ID" value="BROFUL_02131"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044780">
        <property type="term" value="P:bacterial-type flagellum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006417">
        <property type="term" value="P:regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01185">
        <property type="entry name" value="FliW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003775">
        <property type="entry name" value="Flagellar_assembly_factor_FliW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024046">
        <property type="entry name" value="Flagellar_assmbl_FliW_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39190">
        <property type="entry name" value="PTHR39190"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02623">
        <property type="entry name" value="FliW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141457">
        <property type="entry name" value="SSF141457"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-1005">Bacterial flagellum biogenesis</keyword>
    <keyword evidence="3" id="KW-0143">Chaperone</keyword>
    <keyword evidence="1 3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0810">Translation regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19148.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="154" mass="17604" checksum="17DBB39FFDD8F09B" modified="2015-11-11" version="1">MLEMKEEYRENDSIVSLSTEKFGNLHIEKKNIITFDDGMLGFEDLKQFVIVDIEECLPFEWLVSVKDPLIAFPILNPIPFFTDYNPMKAINDLTSLSGDKKDIEVFCTVTLGKSASDVTINLKGPVIINMKDKKGKQFVLTEDYYSLHHPLLRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTA4</accession>
    <name>A0A0M2UTA4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02207</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000221">
        <property type="protein sequence ID" value="KKO19072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19072">
        <property type="protein sequence ID" value="KKO19072"/>
        <property type="gene ID" value="BROFUL_02207"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1440.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012657">
        <property type="entry name" value="23S_rRNA-intervening_sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036583">
        <property type="entry name" value="23S_rRNA_IVS_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05635">
        <property type="entry name" value="23S_rRNA_IVP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158446">
        <property type="entry name" value="SSF158446"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02436">
        <property type="entry name" value="TIGR02436"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="82" mass="9395" checksum="6E9E8455235AD411" modified="2015-11-11" version="1">MSKDKRIFDLEERLIDFAVRIIRTTESLPKTRVGNHIAGQLIRCGTSSAPNYGEAQSAESRSDFIHKMKVSLKSYVKQRYGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTM0</accession>
    <name>A0A0M2UTM0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cytochrome c biogenesis protein resC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">ccsA</name>
        <name evidence="7" type="synonym">resC</name>
        <name evidence="7" type="ORF">BROFUL_01880</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000194">
        <property type="protein sequence ID" value="KKO19418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19418">
        <property type="protein sequence ID" value="KKO19418"/>
        <property type="gene ID" value="BROFUL_01880"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017004">
        <property type="term" value="P:cytochrome complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002541">
        <property type="entry name" value="Cyt_c_assembly"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045062">
        <property type="entry name" value="Cyt_c_biogenesis_CcsA/CcmC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30071">
        <property type="entry name" value="PTHR30071"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01578">
        <property type="entry name" value="Cytochrom_C_asm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="37"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="68"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="98"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="127"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="181"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="216"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="247"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrom_C_asm" evidence="6">
        <location>
            <begin position="66"/>
            <end position="268"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01578"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO19418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="285" mass="32651" checksum="9495AFB3DB9B142A" modified="2015-11-11" version="1">MITFSQIPFIVVIFLYFISSVWSIGHIIKPAFFNKKVAKWSMMMGFLTHSGFLIFLGLESGNIPITNVYESFISLIWCILFVYINLDYLYKLPSLDTFLVPVVTALSLWALTFDGGDLFLTVSLQNFWLIAHIIPIFIGYASFTISFSLSIMYLTQQRQLKHKLFGPLFTRLPSLEGIDRLMWKTISFGFPLLTLGLVFGTFWVKTQNILGEQWYLDYKVVLGLATWLIYAALLHMRLVASFHGTKIACLTIAGFCLVLFTFIGTFFMGTKHAFQKVSEQVHTEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTP4</accession>
    <name>A0A0M2UTP4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Chaperone protein DnaJ</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">dnaJ</name>
        <name evidence="10" type="ORF">BROFUL_02109</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="6">Binds 2 Zn(2+) ions per monomer.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="6">The J domain is necessary and sufficient to stimulate DnaK ATPase activity. Zinc center 1 plays an important role in the autonomous, DnaK-independent chaperone activity of DnaJ. Zinc center 2 is essential for interaction with DnaK and for DnaJ activity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the DnaJ family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000211">
        <property type="protein sequence ID" value="KKO19182.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19182">
        <property type="protein sequence ID" value="KKO19182"/>
        <property type="gene ID" value="BROFUL_02109"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2631"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031072">
        <property type="term" value="F:heat shock protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009408">
        <property type="term" value="P:response to heat"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06257">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd10719">
        <property type="entry name" value="DnaJ_zf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01152">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012724">
        <property type="entry name" value="DnaJ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002939">
        <property type="entry name" value="DnaJ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001623">
        <property type="entry name" value="DnaJ_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018253">
        <property type="entry name" value="DnaJ_domain_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008971">
        <property type="entry name" value="HSP40/DnaJ_pept-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001305">
        <property type="entry name" value="HSP_DnaJ_Cys-rich_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036410">
        <property type="entry name" value="HSP_DnaJ_Cys-rich_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036869">
        <property type="entry name" value="J_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00226">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01556">
        <property type="entry name" value="DnaJ_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00684">
        <property type="entry name" value="DnaJ_CXXCXGXG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00625">
        <property type="entry name" value="JDOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00271">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46565">
        <property type="entry name" value="SSF46565"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49493">
        <property type="entry name" value="SSF49493"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57938">
        <property type="entry name" value="SSF57938"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02349">
        <property type="entry name" value="DnaJ_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00636">
        <property type="entry name" value="DNAJ_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50076">
        <property type="entry name" value="DNAJ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51188">
        <property type="entry name" value="ZF_CR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0143">Chaperone</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 6" id="KW-0235">DNA replication</keyword>
    <keyword evidence="2 6 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0677">Repeat</keyword>
    <keyword evidence="6" id="KW-0346">Stress response</keyword>
    <keyword evidence="5 6 7" id="KW-0862">Zinc</keyword>
    <keyword evidence="4 6 7" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="J" evidence="8">
        <location>
            <begin position="6"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="domain" description="CR-type" evidence="9">
        <location>
            <begin position="149"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="repeat" description="CXXCXGXG motif" evidence="6">
        <location>
            <begin position="162"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="repeat" description="CXXCXGXG motif" evidence="6">
        <location>
            <begin position="179"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="repeat" description="CXXCXGXG motif" evidence="6">
        <location>
            <begin position="205"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="repeat" description="CXXCXGXG motif" evidence="6">
        <location>
            <begin position="219"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="CR-type" evidence="7">
        <location>
            <begin position="149"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="162"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="165"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="179"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="182"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="205"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="208"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="219"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="222"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00546"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19182.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="372" mass="41344" checksum="BD0A5C6E8EFFB8AF" modified="2015-11-11" version="1">MADKRDYYELLGIVRTASKDEIKSAYRTLAKKFHPDLNKDNPKLAEEKFKEISEAYEVLIDDNKRARYDQYGHAGVASDFSKGGFTWRDFSHVSDLEDIFGHDIFSDFFGRGSIFQDFFGTRRWGGFGQPEAHVKRLQVEVTLEQAYRGVSTEVAIPHMAVCTECSGSGATKGSAPKTCTNCNGKGEIQQEQLQGFGRIIKIGACPVCGGRGKIIEHPCVSCHGSGEIQRLDKINVKIPPGVDNGTTLRVTADKVAGKLTEDVYVMISVQPHPLFHRQGSDVYLEKTITLAEAALGSKVDVPTLDGNAVMKIPPGTQTDTLFRLRGSGMPHIKIRGHGDQYVRVIVRTPKNLTKRQRELLEEFQTIEKEKIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTP6</accession>
    <name>A0A0M2UTP6_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">LamGL domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01858</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000191">
        <property type="protein sequence ID" value="KKO19443.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19443">
        <property type="protein sequence ID" value="KKO19443"/>
        <property type="gene ID" value="BROFUL_01858"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2314"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00110">
        <property type="entry name" value="LamG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1220">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014755">
        <property type="entry name" value="Cu-Rt/internalin_Ig-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006558">
        <property type="entry name" value="LamG-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001791">
        <property type="entry name" value="Laminin_G"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032812">
        <property type="entry name" value="SbsA_Ig"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13205">
        <property type="entry name" value="Big_5"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00560">
        <property type="entry name" value="LamGL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="SSF49899"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="LamGL" evidence="2">
        <location>
            <begin position="21"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19443.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="640" mass="65896" checksum="FA38090B999D068B" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTS7</accession>
    <name>A0A0M2UTS7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_02897</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000273">
        <property type="protein sequence ID" value="KKO18391.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18391">
        <property type="protein sequence ID" value="KKO18391"/>
        <property type="gene ID" value="BROFUL_02897"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="6"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="HTH cro/C1-type" evidence="3">
        <location>
            <begin position="141"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO18391.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="208" mass="23198" checksum="7ABA3DC04DA72CD6" modified="2015-11-11" version="1">MDRGIKILVVDDDKDYNQYLTKFLTDEGYVVRGITEPMDTLPVLEGEKYPIVILDLKMPQTSGTELLKEIKARYQNICVIILTGYPSFKTAVEAMKLDAFDYLKKPFDLNDLRKALNNAQKTYCLVGSSKDRLKSSVGKNLKSLRKSKKITQKQLASRTGLSPSLLSQIENGQIAASLATLDKLSSALNVKIAYFLDEETGKPAETIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UTZ8</accession>
    <name>A0A0M2UTZ8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_02006</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000202">
        <property type="protein sequence ID" value="KKO19292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19292">
        <property type="protein sequence ID" value="KKO19292"/>
        <property type="gene ID" value="BROFUL_02006"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2497"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043571">
        <property type="term" value="P:maintenance of CRISPR repeat elements"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002729">
        <property type="entry name" value="CRISPR-assoc_Cas1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042206">
        <property type="entry name" value="CRISPR-assoc_Cas1_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01867">
        <property type="entry name" value="Cas_Cas1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00287">
        <property type="entry name" value="cas1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="232" mass="26543" checksum="823E18021DE33716" modified="2015-11-11" version="1">MTGKIANCRTVLSRALRDHSDKIDADAVSKASQRLAHYIVRLNAELTLDISRGIEGESASTYFGVFNQLITSQKDDFRFRERNRRPPLDTVNCLLSFLYTLLMHDVRSALEGVGLDPAVGFLHRDRPGRYGLALDLMEEFRPFIADRLTLSLINLGQVQAKGFQKKESGAVWMDDDTRKAVLVAYQKRKQEEILHPFLNEKVTVGLLFHIQALLMARYLRGDMDNYPPFLWK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU01</accession>
    <name>A0A0M2UU01_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01765</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000182">
        <property type="protein sequence ID" value="KKO19538.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19538">
        <property type="protein sequence ID" value="KKO19538"/>
        <property type="gene ID" value="BROFUL_01765"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1290">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036515">
        <property type="entry name" value="Transposase_17_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19538.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="89" mass="10496" checksum="672FC40978689B8D" modified="2015-11-11" version="1">MDKTHLYVAARYVELNPVRANLVKKPQEYRWSSTSAHIAGRDDRLVHVAPLLEMFDEWSDFLSRGISDEEVEKFRCHERTGDHWALRVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU05</accession>
    <name>A0A0M2UU05_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_03357</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000307">
        <property type="protein sequence ID" value="KKO17959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO17959">
        <property type="protein sequence ID" value="KKO17959"/>
        <property type="gene ID" value="BROFUL_03357"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO17959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="66" mass="8032" checksum="F358BFA2EA7E432E" modified="2015-11-11" version="1">MKQYSENELDVLLDILERYDKELQVEGVYYMDVGYRFKDGQRDDQLVCRHINYKLYIVDNFSYIAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU19</accession>
    <name>A0A0M2UU19_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Two-component response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_02810</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000265">
        <property type="protein sequence ID" value="KKO18486.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18486">
        <property type="protein sequence ID" value="KKO18486"/>
        <property type="gene ID" value="BROFUL_02810"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3474"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="9"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO18486.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="148" mass="16913" checksum="FA71A0C1E5770F07" modified="2015-11-11" version="1">MEGTKKLFPILIAEDDPDDRLIIHDAFEEAGMHHAVHYVEDGQELMDYLCLRGKYSWPNHSPRPGIILLDLNMPKKNGQDALSEIKSDPSLKRIPVIVMTTSKRDEDIGFLYDLGANSYIHKPTDFATLVTIVKTLSRYWFEIVELPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UU42</accession>
    <name>A0A0M2UU42_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01690</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000176">
        <property type="protein sequence ID" value="KKO19583.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19583">
        <property type="protein sequence ID" value="KKO19583"/>
        <property type="gene ID" value="BROFUL_01690"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2095"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025427">
        <property type="entry name" value="DUF4160"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13711">
        <property type="entry name" value="DUF4160"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19583.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="89" mass="10295" checksum="A3A1173608102E26" modified="2015-11-11" version="1">MPTISMFFGIVVSLYFIDNRKHKRPHIHVKYQNSEAVISIPDGELLDGELPPAKMRLVLAWIEIHKDELMADWDLAVNGQQPFKIDPLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUB8</accession>
    <name>A0A0M2UUB8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">DNA repair protein RadC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">radC</name>
        <name evidence="8" type="ORF">BROFUL_01864</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="6">Belongs to the UPF0758 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000193">
        <property type="protein sequence ID" value="KKO19427.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19427">
        <property type="protein sequence ID" value="KKO19427"/>
        <property type="gene ID" value="BROFUL_01864"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2323"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd08071">
        <property type="entry name" value="MPN_DUF2466"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037518">
        <property type="entry name" value="MPN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025657">
        <property type="entry name" value="RadC_JAB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001405">
        <property type="entry name" value="UPF0758"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020891">
        <property type="entry name" value="UPF0758_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30471">
        <property type="entry name" value="PTHR30471"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04002">
        <property type="entry name" value="RadC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00608">
        <property type="entry name" value="radc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50249">
        <property type="entry name" value="MPN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01302">
        <property type="entry name" value="UPF0758"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="MPN" evidence="7">
        <location>
            <begin position="98"/>
            <end position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003797"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO19427.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="222" mass="24322" checksum="C4C20A640A130F10" modified="2015-11-11" version="1">MKKISDIPKPDRPREKLVQKGAEALSDIELLAILLGSGTKGHDVMTVAERILKVLDAHNEKLNLNELKKIEGVGPAKATLIAAALEFVRRRIRPEGLKISFPADVLPLIANYADRKQEHFICVSINGANEVIAARVVTVGLVNKSQVHPREVFADPITDRAAAVIIAHNHPSGSLSPSKEDVEVTKQLRAAGETLGIKLLDHIIFNHKGYYSFLERGELVTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUC3</accession>
    <name>A0A0M2UUC3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01847</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000191">
        <property type="protein sequence ID" value="KKO19432.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19432">
        <property type="protein sequence ID" value="KKO19432"/>
        <property type="gene ID" value="BROFUL_01847"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19432.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="106" mass="12442" checksum="9DB00FC712666F3F" modified="2015-11-11" version="1">MRKRFEQQRKLGVISISEVKLPLKSGDELPPILRALQYIYITPELNEEVFKILEEKVLKGEKKTGRYGMELWHILVLSAVRLGLEADYDRLDDFSNYHKLIRQILG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUE7</accession>
    <name>A0A0M2UUE7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01610</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19678">
        <property type="protein sequence ID" value="KKO19678"/>
        <property type="gene ID" value="BROFUL_01610"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002850">
        <property type="entry name" value="PIN_toxin-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34610">
        <property type="entry name" value="PTHR34610"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00305">
        <property type="entry name" value="TIGR00305"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19678.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="98" mass="11030" checksum="BEF69967C5B0CDB7" modified="2015-11-11" version="1">MYCTDSLDELVRILSSKFTLAASEIYKIILDIKSIGRRITISSKEHPISDDPSDNLFVNLAMDGNAKIIVSGDSHLLRLKKYKGIDIITVAEFVKRFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUS4</accession>
    <name>A0A0M2UUS4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Strong similarity to sigma 54 response regulator protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">atoC_1</name>
        <name evidence="7" type="ORF">BROFUL_02521</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18741.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18741">
        <property type="protein sequence ID" value="KKO18741"/>
        <property type="gene ID" value="BROFUL_02521"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025662">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025943">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025944">
        <property type="entry name" value="Sigma_54_int_dom_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13492">
        <property type="entry name" value="GAF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00158">
        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01590">
        <property type="entry name" value="HTHFIS"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00065">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00675">
        <property type="entry name" value="SIGMA54_INTERACT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00676">
        <property type="entry name" value="SIGMA54_INTERACT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00688">
        <property type="entry name" value="SIGMA54_INTERACT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="6">
        <location>
            <begin position="268"/>
            <end position="497"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="KKO18741.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="578" mass="63731" checksum="FA0D07E0345F618A" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUT4</accession>
    <name>A0A0M2UUT4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nitrate oxidoreductase subunit beta</fullName>
            <ecNumber evidence="2">1.7.99.4</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">nxrB</name>
        <name evidence="2" type="ORF">BROFUL_02531</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.7.99.4" evidence="2"/>
    <dbReference type="EMBL" id="LAQJ01000237">
        <property type="protein sequence ID" value="KKO18751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18751">
        <property type="protein sequence ID" value="KKO18751"/>
        <property type="gene ID" value="BROFUL_02531"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.3143"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008940">
        <property type="term" value="F:nitrate reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13247">
        <property type="entry name" value="Fer4_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="1">
        <location>
            <begin position="26"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="1">
        <location>
            <begin position="192"/>
            <end position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18751.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="403" mass="47304" checksum="EA80213F37407E92" modified="2015-11-11" version="1">MTLVHNWHLGRRMEYPYFESRPKHQFAAIFNTNRCIACQTCTMACKSAWTYNKGQEYMWWNNVETKPYGGYPQSWDVKTLKLIDNGENTWYTDEKDEKLSPYGVYEGDTIFEAAAKKNINQWAVGYIPEDKEWRAPNFGEDVAKSNKPDEYSSLPEHSRWFFYIQRLCNHCTYPGCLAACPRKAIYKRKEDGIVLIDQKRCRGYRKCVEQCPYKKPMYRGLTRVSEKCIACYPRIEGRDPLTKGRPMETRCMAACVGQIRLQGFLDDNPKNPVTWLIRHDKLALPLYPQFGTEPNIYYIPPRWAPRAYLRQMFGPGVDEAIEKFMVPSRERLAVMSLFRMTQTIIYEYKIEEGPKVFETTIHGKKFELYNDTVIGYGEDGQEVVRTTVEEPVYIRDPKHYNSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUV1</accession>
    <name>A0A0M2UUV1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01888</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000195">
        <property type="protein sequence ID" value="KKO19400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19400">
        <property type="protein sequence ID" value="KKO19400"/>
        <property type="gene ID" value="BROFUL_01888"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010921">
        <property type="entry name" value="Trp_repressor/repl_initiator"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48295">
        <property type="entry name" value="SSF48295"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="87" mass="9988" checksum="68231241173DBEDB" modified="2015-11-11" version="1" fragment="single">FYHIWRAFSLTKSLFFYSTKFLPAKSREIPTVQRLKKYVAKEAIIAALCKEAKKSIDEIKKKRGIARQVAMDLFYRVGGLSGTEIGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UUW8</accession>
    <name>A0A0M2UUW8_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Flagellar protein FliL</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BROFUL_03011</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 8">Controls the rotational direction of flagella during chemotaxis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the FliL family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000282">
        <property type="protein sequence ID" value="KKO18284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18284">
        <property type="protein sequence ID" value="KKO18284"/>
        <property type="gene ID" value="BROFUL_03011"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009425">
        <property type="term" value="C:bacterial-type flagellum basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005503">
        <property type="entry name" value="FliL"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35091">
        <property type="entry name" value="PTHR35091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03748">
        <property type="entry name" value="FliL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10" id="KW-0966">Cell projection</keyword>
    <keyword evidence="8" id="KW-0145">Chemotaxis</keyword>
    <keyword evidence="10" id="KW-0969">Cilium</keyword>
    <keyword evidence="8" id="KW-0283">Flagellar rotation</keyword>
    <keyword evidence="10" id="KW-0282">Flagellum</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="30"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="73"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="73"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU364125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO18284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="210" mass="23366" checksum="3169FE3C3E8A7BFE" modified="2015-11-11" version="1">MENKEDKNKGVEISEVPDPSIKQRKTNKSLMLMGSVVLISVGCAFLFVSKVYPSLSGNVQIDVPDQEKILNEDGEEKHAEKDVEVEVVPKSASKKKEEKGKGQQDSIEEESTMVPFEPVIVNLSGSGGRRYLKTVVNLEAKDGETKHKIEAKMVQIKDRLISILSSKTLEDIEGLEGQESLRREIKDAADMVVKAEDGILQVYFSEFVIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV65</accession>
    <name>A0A0M2UV65_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Potassium uptake system protein TrkA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">trkA</name>
        <name evidence="3" type="ORF">BROFUL_01819</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000189">
        <property type="protein sequence ID" value="KKO19480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19480">
        <property type="protein sequence ID" value="KKO19480"/>
        <property type="gene ID" value="BROFUL_01819"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2261"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008324">
        <property type="term" value="F:cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006813">
        <property type="term" value="P:potassium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006037">
        <property type="entry name" value="RCK_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036721">
        <property type="entry name" value="RCK_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003148">
        <property type="entry name" value="RCK_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02080">
        <property type="entry name" value="TrkA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02254">
        <property type="entry name" value="TrkA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF116726">
        <property type="entry name" value="SSF116726"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51202">
        <property type="entry name" value="RCK_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51201">
        <property type="entry name" value="RCK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RCK N-terminal" evidence="1">
        <location>
            <begin position="3"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="domain" description="RCK C-terminal" evidence="2">
        <location>
            <begin position="134"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="230" mass="24939" checksum="EE66ABE95046914B" modified="2015-11-11" version="1">MRQFAVIGLGRFGRKVAETLAKKGAPVIAIDREPELVGKVSDFVTKAVQIDSTDEKALIASGVKDVDVAAVCMGEDVESSVLTTALLKNLSINEIVARASTLLHAQILKMVGATRVVFPEEDMGIRVANSILSPGVLEYIELGGDYTLAEVEAESESVGRTMNELNLKTKYGINTLIVKRKVFETGEKTEEVVGKEMKVLPTSDYKIQAGDILVVVGNSRDIEAFEKHMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV69</accession>
    <name>A0A0M2UV69_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8 19">Adenosylcobinamide-GDP ribazoletransferase</fullName>
            <ecNumber evidence="7 19">2.7.8.26</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="18 19">Cobalamin synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="17 19">Cobalamin-5'-phosphate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="19" type="primary">cobS</name>
        <name evidence="20" type="ORF">BROFUL_01345</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="20 21" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="16 19">Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 19">
            <text>adenosylcob(III)inamide-GDP + alpha-ribazole 5'-phosphate = adenosylcob(III)alamin 5'-phosphate + GMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23560"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57918"/>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
            <dbReference type="ChEBI" id="CHEBI:60487"/>
            <dbReference type="ChEBI" id="CHEBI:60493"/>
            <dbReference type="EC" id="2.7.8.26"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 19">
            <text>adenosylcob(III)inamide-GDP + alpha-ribazole = adenosylcob(III)alamin + GMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:16049"/>
            <dbReference type="ChEBI" id="CHEBI:10329"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:18408"/>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
            <dbReference type="ChEBI" id="CHEBI:60487"/>
            <dbReference type="EC" id="2.7.8.26"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3 19">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="5 19">Cofactor biosynthesis; adenosylcobalamin biosynthesis; adenosylcobalamin from cob(II)yrinate a,c-diamide: step 7/7.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="19">Cell membrane</location>
            <topology evidence="19">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="4">Membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6 19">Belongs to the CobS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="20">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.8.26" evidence="7 19"/>
    <dbReference type="EMBL" id="LAQJ01000139">
        <property type="protein sequence ID" value="KKO19953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19953">
        <property type="protein sequence ID" value="KKO19953"/>
        <property type="gene ID" value="BROFUL_01345"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1661"/>
    <dbReference type="UniPathway" id="UPA00148">
        <property type="reaction ID" value="UER00238"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051073">
        <property type="term" value="F:adenosylcobinamide-GDP ribazoletransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008818">
        <property type="term" value="F:cobalamin 5'-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00719">
        <property type="entry name" value="CobS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003805">
        <property type="entry name" value="CobS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34148">
        <property type="entry name" value="PTHR34148"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02654">
        <property type="entry name" value="CobS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 19" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10 19" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="13 19" id="KW-0460">Magnesium</keyword>
    <keyword evidence="15 19" id="KW-0472">Membrane</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11 19" id="KW-0808">Transferase</keyword>
    <keyword evidence="12 19" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="14 19" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="30"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="77"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="170"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="221"/>
            <end position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00004663"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00010561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00013200"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00015850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00025228"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00032605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="ARBA" id="ARBA00032853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00719"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="KKO19953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="242" mass="26561" checksum="6167671F37BA386E" modified="2015-11-11" version="1">MVYWFPVVGLCIGVFLCLAYLPLYCFFPSLIADALIVLIFIMITGAMHLDGLADTCDGIWGGWNKEKRLEIMKDSRIGSFGAIGLIGMIGLKYACLLSIGEISTIHSSPFRISIPCESCVTTPVLVNKCVALLIMPVAGRWAQVCAAGISTYARNESGTGSFITKDTTRIQVIFLSVFPVVLFWYFFGLGGFFIFAIMLIFTLGWIWYIKKKIGGMTGDTLGATNEIAELVFLLSLLLLGKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UV87</accession>
    <name>A0A0M2UV87_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">tRNA(FMet)-specific endonuclease VapC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">vapC_2</name>
        <name evidence="2" type="ORF">BROFUL_02385</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000228">
        <property type="protein sequence ID" value="KKO18906.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18906">
        <property type="protein sequence ID" value="KKO18906"/>
        <property type="gene ID" value="BROFUL_02385"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09873">
        <property type="entry name" value="PIN_Pae0151-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002716">
        <property type="entry name" value="PIN_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044153">
        <property type="entry name" value="PIN_Pae0151-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01850">
        <property type="entry name" value="PIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PINc" evidence="1">
        <location>
            <begin position="4"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO18906.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="142" mass="16093" checksum="FC26814B735878AE" modified="2015-11-11" version="1">MKRIVVDASVVLKWYLDDEDHGQKAVHLLTGYISGEFDMIAPSLLEYEVINGLMVAQKKGRIDEEKIYSAIEGFINLGIKQKNLAHLYPKLFYYGKTYHCTAYDASYIATADDEGILLITADRGLFNVAGKDLKWIKWIGDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVS1</accession>
    <name>A0A0M2UVS1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="14">Adenosylcobinamide kinase</fullName>
            <ecNumber evidence="8">2.7.1.156</ecNumber>
            <ecNumber evidence="9">2.7.7.62</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="15">Adenosylcobinamide-phosphate guanylyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="19" type="ORF">BROFUL_01334</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>adenosylcob(III)inamide + ATP = adenosylcob(III)inamide phosphate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:15769"/>
            <dbReference type="ChEBI" id="CHEBI:2480"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58502"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.156"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>adenosylcob(III)inamide + GTP = adenosylcob(III)inamide phosphate + GDP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:15765"/>
            <dbReference type="ChEBI" id="CHEBI:2480"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
            <dbReference type="ChEBI" id="CHEBI:58502"/>
            <dbReference type="EC" id="2.7.1.156"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>adenosylcob(III)inamide phosphate + GTP + H(+) = adenosylcob(III)inamide-GDP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:22712"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:58502"/>
            <dbReference type="ChEBI" id="CHEBI:60487"/>
            <dbReference type="EC" id="2.7.7.62"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="6">Cofactor biosynthesis; adenosylcobalamin biosynthesis; adenosylcobalamin from cob(II)yrinate a,c-diamide: step 5/7.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5">Cofactor biosynthesis; adenosylcobalamin biosynthesis; adenosylcobalamin from cob(II)yrinate a,c-diamide: step 6/7.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the CobU/CobP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.156" evidence="8"/>
    <dbReference type="EC" id="2.7.7.62" evidence="9"/>
    <dbReference type="EMBL" id="LAQJ01000139">
        <property type="protein sequence ID" value="KKO19942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19942">
        <property type="protein sequence ID" value="KKO19942"/>
        <property type="gene ID" value="BROFUL_01334"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1649"/>
    <dbReference type="UniPathway" id="UPA00148">
        <property type="reaction ID" value="UER00236"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043752">
        <property type="term" value="F:adenosylcobinamide kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008820">
        <property type="term" value="F:cobinamide phosphate guanylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00544">
        <property type="entry name" value="CobU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003203">
        <property type="entry name" value="Cobinamide_kinase/P_G-Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34848">
        <property type="entry name" value="PTHR34848"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02283">
        <property type="entry name" value="CobU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006135">
        <property type="entry name" value="CobU"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="17" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="12" id="KW-0418">Kinase</keyword>
    <keyword evidence="11 17" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="19" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10 19" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="18">
        <location>
            <begin position="102"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="18">
        <location>
            <begin position="124"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="active site" description="GMP-histidine intermediate" evidence="16">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <begin position="9"/>
            <end position="16"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <begin position="33"/>
            <end position="35"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <begin position="50"/>
            <end position="53"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="61"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="83"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000312"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000711"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001522"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00003889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00004692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00005159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00007490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00012016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00012523"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00029570"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00030571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="PIRSR" id="PIRSR006135-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="PIRSR" id="PIRSR006135-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="KKO19942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="218" mass="23566" checksum="8F2AD99FC84A6D3C" modified="2015-11-11" version="1">MAKITFILGGARSGKSAFAEGLTKKYNDVVYIATAEAKDDEMHERIRIHRARRPQNWMTIESPFHVNKVVSDISGTTGLVLIDCITLYITNMLLNSETVPGGRGGQPFAQPPAKGYDLPSPGRGGESNQMTNSAGCSGLQTGSPQERQQVILAEIHKLRRACRESGSDVILISNEVGLSIVPDNALSREFRDIAGYANQIIAGEADEVYFMVAGIARG</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UVX8</accession>
    <name>A0A0M2UVX8_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Aldehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_01552</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000162">
        <property type="protein sequence ID" value="KKO19730.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19730">
        <property type="protein sequence ID" value="KKO19730"/>
        <property type="gene ID" value="BROFUL_01552"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1915"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="5">
        <location>
            <begin position="27"/>
            <end position="492"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="262"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="301"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO19730.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="505" mass="56173" checksum="9B59BC786C06327B" modified="2015-11-11" version="1">MIYKEPNTQGSLVTFKSSYDNYIGGKWVAPAGGEYFEDISPVNGKPFTKVARSKKEDIELALDKAHEARVQWGHISVAERSNILLKIADRMEANLEKLAVAETWENGKPVRETLAADLPLAIDHFRYFAGVIRGEESGMSEINAQTVSYHLKEPIGVVGQIIPWNFPLLMAAWKLAPALAAGNCVALKPAEQTPVTILLLIELVEDLLPPGVVNIVNGFGIEAGKPLASSSRVGKVAFTGETTTGRLIMQYASENIIPVTLELGGKSPNIFMENVLREKDAFAEKCLEGFAMFALNQGEVCTCPSRALIQESIYDEFLQQVLRRVSRIKVGNPLDTDTMMGAQASRDQYEKITHYLDVGKQEGARCLTGGKPYLSKEYPGGYYIEPTIFEGNNKMRVFQEEIFGPVVSVTKFKDEKEAVELANDVLYGLGAGLWTRDMHQAYQVARQIEAGRVWINCYHLYPAHAAFGGYKQSGIGRETHKMMLEHYRRTKNLLVSYDKNPMGFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWJ1</accession>
    <name>A0A0M2UWJ1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_02420</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000231">
        <property type="protein sequence ID" value="KKO18874.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18874">
        <property type="protein sequence ID" value="KKO18874"/>
        <property type="gene ID" value="BROFUL_02420"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO18874.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="173" mass="18808" checksum="4DCECDCFC89CB6C9" modified="2015-11-11" version="1">MIASGVLYVSIMTIAVNSVYAEDATHKHSESAIAPAHPTVEEFVCPSCKEVRVSPVKGKTLATKSMVCPDCKNEVGEFSVHNCDKCGNDVLVCGMCEKAAAELKTATMEGKCPKCKLVRRRPVKGRALLAGWEMKCPDCKKKTPEMLIQHCDECGAEFLTCPICLKEQGKAKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWN2</accession>
    <name>A0A0M2UWN2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 6">GTPase Era</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">era</name>
        <name evidence="12" type="ORF">BROFUL_01093</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 8 9">Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Era GTPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20242.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20242">
        <property type="protein sequence ID" value="KKO20242"/>
        <property type="gene ID" value="BROFUL_01093"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1360"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070181">
        <property type="term" value="F:small ribosomal subunit rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042274">
        <property type="term" value="P:ribosomal small subunit biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04163">
        <property type="entry name" value="Era"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00367">
        <property type="entry name" value="GTPase_Era"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030388">
        <property type="entry name" value="G_ERA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005662">
        <property type="entry name" value="GTP-bd_Era"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004044">
        <property type="entry name" value="KH_dom_type_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009019">
        <property type="entry name" value="KH_sf_prok-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42698">
        <property type="entry name" value="PTHR42698"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07650">
        <property type="entry name" value="KH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00326">
        <property type="entry name" value="GTP1OBG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54814">
        <property type="entry name" value="SSF54814"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00436">
        <property type="entry name" value="era"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51713">
        <property type="entry name" value="G_ERA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50823">
        <property type="entry name" value="KH_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6 8" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 6 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0690">Ribosome biogenesis</keyword>
    <keyword evidence="4 6 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="6" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Era-type G" evidence="11">
        <location>
            <begin position="9"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="domain" description="KH type-2" evidence="10">
        <location>
            <begin position="207"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="region of interest" description="G1" evidence="8">
        <location>
            <begin position="17"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="region of interest" description="G2" evidence="8">
        <location>
            <begin position="43"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="region of interest" description="G3" evidence="8">
        <location>
            <begin position="64"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="region of interest" description="G4" evidence="8">
        <location>
            <begin position="126"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="region of interest" description="G5" evidence="8">
        <location>
            <begin position="155"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="17"/>
            <end position="24"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="64"/>
            <end position="68"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="126"/>
            <end position="129"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00020484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00367"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51713"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="KKO20242.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="299" mass="34338" checksum="89A82D6BC43E44A9" modified="2015-11-11" version="1">MQPEKETFKAGYVAIVGKPNVGKSTLINDFMGCKLSIVTPKPQTTRQKIMGVLTKEDYQIVFYDTPGIMEPKYELQNYMIKKAYEALEDADVILLMAESLKPPDEKDRDLLRKVSRLHIPTILAINKIDLVEKDSLIPIISTYSTQGKFAEIVPISALKGINLDLMLTLIVKYLPAGAPFYPEDYMTDYNERFLAAEIIREKVFEFYGEEIPYSTSVEIMEFKEREAGKDFIKAVIYVERDSQKGIIIGDHGKAIKRVGVIAREEIEKQIGRKVYLELWVKVMEKWRKDKGKLHKLGYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWN5</accession>
    <name>A0A0M2UWN5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Acyl carrier protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BROFUL_02377</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000227">
        <property type="protein sequence ID" value="KKO18919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO18919">
        <property type="protein sequence ID" value="KKO18919"/>
        <property type="gene ID" value="BROFUL_02377"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1200.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036736">
        <property type="entry name" value="ACP-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009081">
        <property type="entry name" value="PP-bd_ACP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006162">
        <property type="entry name" value="Ppantetheine_attach_site"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00550">
        <property type="entry name" value="PP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47336">
        <property type="entry name" value="SSF47336"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50075">
        <property type="entry name" value="CARRIER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00012">
        <property type="entry name" value="PHOSPHOPANTETHEINE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0596">Phosphopantetheine</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Carrier" evidence="4">
        <location>
            <begin position="6"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="modified residue" description="O-(pantetheine 4'-phosphoryl)serine" evidence="3">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00258"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO18919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="74" mass="8115" checksum="AD91C26829BD5ED5" modified="2015-11-11" version="1">MSGEVVSIDNRVKKVIIERLKPNINVAEISKNTPLIGKGLGLDSVGVLELVVGLEQEFSIMFDDSEMNIESSRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWS1</accession>
    <name>A0A0M2UWS1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Formate dehydrogenase</fullName>
            <ecNumber evidence="6">1.17.1.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="18" type="ORF">BROFUL_00757</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>formate + NAD(+) = CO2 + NADH</text>
            <dbReference type="Rhea" id="RHEA:15985"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.17.1.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mo-bis(molybdopterin guanine dinucleotide)</name>
            <dbReference type="ChEBI" id="CHEBI:60539"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="5">In the C-terminal section; belongs to the prokaryotic molybdopterin-containing oxidoreductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.17.1.9" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000096">
        <property type="protein sequence ID" value="KKO20513.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20513">
        <property type="protein sequence ID" value="KKO20513"/>
        <property type="gene ID" value="BROFUL_00757"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.957"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009326">
        <property type="term" value="C:formate dehydrogenase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008863">
        <property type="term" value="F:formate dehydrogenase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043546">
        <property type="term" value="F:molybdopterin cofactor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015942">
        <property type="term" value="P:formate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd02753">
        <property type="entry name" value="MopB_Formate-Dh-H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041924">
        <property type="entry name" value="Formate_Dh-H_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006478">
        <property type="entry name" value="Formate_DH_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006657">
        <property type="entry name" value="MoPterin_dinucl-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006656">
        <property type="entry name" value="Mopterin_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006963">
        <property type="entry name" value="Mopterin_OxRdtase_4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006655">
        <property type="entry name" value="Mopterin_OxRdtase_prok_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019574">
        <property type="entry name" value="NADH_UbQ_OxRdtase_Gsu_4Fe4S-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04879">
        <property type="entry name" value="Molybdop_Fe4S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00384">
        <property type="entry name" value="Molybdopterin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01568">
        <property type="entry name" value="Molydop_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10588">
        <property type="entry name" value="NADH-G_4Fe-4S_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00926">
        <property type="entry name" value="Molybdop_Fe4S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00929">
        <property type="entry name" value="NADH-G_4Fe-4S_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="SSF50692"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01591">
        <property type="entry name" value="Fdh-alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51839">
        <property type="entry name" value="4FE4S_HC3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51669">
        <property type="entry name" value="4FE4S_MOW_BIS_MGD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00932">
        <property type="entry name" value="MOLYBDOPTERIN_PROK_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="7 13" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="11 13" id="KW-0408">Iron</keyword>
    <keyword evidence="12 13" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="9 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="14">
        <location>
            <begin position="1"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S His(Cys)3-ligated-type" evidence="17">
        <location>
            <begin position="78"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="15">
        <location>
            <begin position="137"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="15">
        <location>
            <begin position="181"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S Mo/W bis-MGD-type" evidence="16">
        <location>
            <begin position="218"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="225"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="228"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="232"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="260"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000455"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00007023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00013128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS51669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS51839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="KKO20513.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="895" mass="99239" checksum="65726EED5301B149" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWT4</accession>
    <name>A0A0M2UWT4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01234</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000135">
        <property type="protein sequence ID" value="KKO20035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20035">
        <property type="protein sequence ID" value="KKO20035"/>
        <property type="gene ID" value="BROFUL_01234"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="80" mass="9345" checksum="7C26CC5D6EA69D00" modified="2015-11-11" version="1">MQEILAYLSEYPDAEDTLEGVAEWWLLKQKVRHKASEVKESLSELVAQGILLEHKGKDAHIYYRINRSRYEGIKAIQQKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWU3</accession>
    <name>A0A0M2UWU3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Efflux transporter protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00944</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000116">
        <property type="protein sequence ID" value="KKO20312.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20312">
        <property type="protein sequence ID" value="KKO20312"/>
        <property type="gene ID" value="BROFUL_00944"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032317">
        <property type="entry name" value="HlyD_D23"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006143">
        <property type="entry name" value="RND_pump_MFP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16576">
        <property type="entry name" value="HlyD_D23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01730">
        <property type="entry name" value="RND_mfp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="domain" description="HlyD_D23" evidence="3">
        <location>
            <begin position="42"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20312.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="400" mass="43832" checksum="3936E6C29574CA58" modified="2015-11-11" version="1">MNKYILASVPCLIAIIVVSFFLFGNTKSIQYKTEKIDRGTIAKYVTATGTINPVRTVIIGSQVTGLISKLYADYNSEVKTGQIVAQIDPIPFEHQVKRAEAALATAIASLEKAKVTAKNNRRNYHRSKKLFAKKVVSIEELDAARTVYETGLADTKLAEAQVLQAKAALDIAKTDLKHTVILSPLNGIVISRNVDVGQTVVSSFQTPTLFNIAEDLVHMQVNTNVDEADIGMVKVGQDAKFTVDAFPDDVFEGRVSEIRMAPIIFQNVVTYDTIINVGNSSLKLKPGMTANTSILVARVEDVVRVPNAALRYTPSEVLKTEMDKKALIDRKSSKKTISHIWVLDNGELRRIAVKLGVGDDSFTEISGGDLKEGQEVVVSETVPVTAKKGQQKVPWGRTRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWV0</accession>
    <name>A0A0M2UWV0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01226</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000134">
        <property type="protein sequence ID" value="KKO20050.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20050">
        <property type="protein sequence ID" value="KKO20050"/>
        <property type="gene ID" value="BROFUL_01226"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20050.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="99" mass="11040" checksum="B7C7C61107D190FB" modified="2015-11-11" version="1">MVKLHEKHQSPAMQEEATQAVSLYYEMLQAVPHLPVNPSGAAGCPGIGVLANSCVIICAHFELQSIKRDSINRYLHPFWCLHSKDMKTVLYNLTGGIYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UWY3</accession>
    <name>A0A0M2UWY3_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Chromosome segregation ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01820</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000189">
        <property type="protein sequence ID" value="KKO19481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19481">
        <property type="protein sequence ID" value="KKO19481"/>
        <property type="gene ID" value="BROFUL_01820"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2262"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025669">
        <property type="entry name" value="AAA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13614">
        <property type="entry name" value="AAA_31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_31" evidence="1">
        <location>
            <begin position="1"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="263" mass="29281" checksum="4227AE9F16349051" modified="2015-11-11" version="1">MRSIALTNQKGGVAKTTTTVNLGACLAQMGKRVLLVDLDPQGNLSSWLGLDIHNLERSMYNVFLEEVYFEEILTKTCVENLTLAPSNVALAGVERILAHEKGRDLILRKRLSPVISKYDYIMLDCPPSLGLITINALTFVKEVFIPLETKVLALNGLVTLMNTVQVVKERLNHHLEVTGIIACRFDGRTNLSNEVYSQIKDRFKEKVFNTIIRENTRLAECPISGKPITLYAPDSPGAVDYTNLAKEVLEREKNGASPDRTPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX07</accession>
    <name>A0A0M2UX07_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Translation elongation factor Tu</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_02272</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000224">
        <property type="protein sequence ID" value="KKO19029.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19029">
        <property type="protein sequence ID" value="KKO19029"/>
        <property type="gene ID" value="BROFUL_02272"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2834"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="2" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19029.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="20" mass="2236" checksum="74F591140A9035CE" modified="2015-11-11" version="1" fragment="single">MGKEVFKRTKPHVNVGTIGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX27</accession>
    <name>A0A0M2UX27_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00644</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000087">
        <property type="protein sequence ID" value="KKO20608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20608">
        <property type="protein sequence ID" value="KKO20608"/>
        <property type="gene ID" value="BROFUL_00644"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.814"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004853">
        <property type="term" value="F:uroporphyrinogen decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015948">
        <property type="term" value="P:methanogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006730">
        <property type="term" value="P:one-carbon metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006779">
        <property type="term" value="P:porphyrin-containing compound biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.210">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006360">
        <property type="entry name" value="Mtase_MtaA_CmuA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038071">
        <property type="entry name" value="UROD/MetE-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000257">
        <property type="entry name" value="Uroporphyrinogen_deCOase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01208">
        <property type="entry name" value="URO-D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51726">
        <property type="entry name" value="SSF51726"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01463">
        <property type="entry name" value="mtaA_cmuA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0484">Methanogenesis</keyword>
    <keyword evidence="3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Uroporphyrinogen_deCOase" evidence="2">
        <location>
            <begin position="14"/>
            <end position="347"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01208"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="355" mass="39181" checksum="A160EA52D08B1AB3" modified="2015-11-11" version="1">MRMQIFTEKRMVMTEKERLLKILHGAPVDRSPVIAPGGMMTMASKEVMDLTNCRWPSVHRDAEKMAALSVAMHDKAGIENLGIPFCMTVEAEAMGGEVEDGNEVTEPHMVQYPLKSVEEWRNLKELHPFKDGRLPVILACTFLLSQGYPDIPVIGNLVGPLSLATSLIDAMTLFKALRREPEEVHRMLAFLTDNGIRYGEALIKNGADLMVISDPSATGEILGPELFREFALPYLNQMIHRIHTLRKPVMVHICGKITPVYESLKRLDAEGISVDSVVSIKEMRNAIPGKKLMGNVSTILLQNGPVDKIQAVSRNLLDFGVDILAPACGLSAKTPVRHIRAMTDIAKITSGKPQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UX43</accession>
    <name>A0A0M2UX43_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Uma2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01747</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000181">
        <property type="protein sequence ID" value="KKO19546.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19546">
        <property type="protein sequence ID" value="KKO19546"/>
        <property type="gene ID" value="BROFUL_01747"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.2164"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd06260">
        <property type="entry name" value="DUF820"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1570.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012296">
        <property type="entry name" value="Nuclease_put_TT1808"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008538">
        <property type="entry name" value="Uma2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05685">
        <property type="entry name" value="Uma2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Uma2" evidence="1">
        <location>
            <begin position="15"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19546.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="185" mass="21358" checksum="42ED98DFDAEC0EF1" modified="2015-11-11" version="1">MAQIVVEKKAKKYTYEDYCKISDEKRYELIEGELLMTPSPITKHQRISGKLEFILRRFLTENNLGELFYAPYDVCFDNENVVQPDILFISKDRAEIVGEKNVQGAPDLVIEIVSESSAYRDMVQKKKLYAKFGVKEYWIVIPESEEIAVYTLKDKTYQLCKAYGKGNTLESSLLKGLKIGLMDIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXF7</accession>
    <name>A0A0M2UXF7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00511</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000070">
        <property type="protein sequence ID" value="KKO20768.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20768">
        <property type="protein sequence ID" value="KKO20768"/>
        <property type="gene ID" value="BROFUL_00511"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="98"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20768.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="128" mass="14888" checksum="DE2C001BE78659C9" modified="2015-11-11" version="1" fragment="single">QPYLPLIRRYRLFIREGLLRFARNDNGQYVTKDIASVIARVLSEAISRFHNGELVAAVPRYGIYILNHGVTQIYFTWNTSLRHTFMGRASMDKKRNDVRAYLIMPSFSNTTLFLAFIKRYGSAIPIKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXH5</accession>
    <name>A0A0M2UXH5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="5">tRNA pseudouridine synthase D</fullName>
            <ecNumber evidence="5">5.4.99.27</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">truD</name>
        <name evidence="5" type="ORF">BROFUL_00485</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the pseudouridine synthase TruD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.27" evidence="5"/>
    <dbReference type="EMBL" id="LAQJ01000066">
        <property type="protein sequence ID" value="KKO20783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20783">
        <property type="protein sequence ID" value="KKO20783"/>
        <property type="gene ID" value="BROFUL_00485"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.607"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106029">
        <property type="term" value="F:tRNA pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001522">
        <property type="term" value="P:pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008033">
        <property type="term" value="P:tRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2350.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001656">
        <property type="entry name" value="PsdUridine_synth_TruD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020119">
        <property type="entry name" value="PsdUridine_synth_TruD_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011760">
        <property type="entry name" value="PsdUridine_synth_TruD_insert"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042214">
        <property type="entry name" value="TruD_catalytic"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13326">
        <property type="entry name" value="PTHR13326"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01142">
        <property type="entry name" value="TruD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037016">
        <property type="entry name" value="Pseudouridin_synth_euk_prd"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50984">
        <property type="entry name" value="TRUD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01268">
        <property type="entry name" value="UPF0024"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="TRUD" evidence="4">
        <location>
            <begin position="175"/>
            <end position="387"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="KKO20783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="428" mass="49504" checksum="96B1F5C2009F84AA" modified="2015-11-11" version="1">MIKVKARPEDFIVEEVADLPFQRDGNFCVYLLKKRGWNTVDILKMLSRKLNIPYASFSYGGKKDKYALTSQYITIARQIPSTSQGKDFVVGVQPNDKGGMKRPWIKSPNSTLTHAYSVPSKIDEENYSTSLVGCMDRPMGPDLITGNRFQIAVRNLTDDDLASALGEIDLVKQDGYPNYFDDQRFGSFDARQGFIAEKILKKHYSGALKIYFSGIHPEDSKEEKEHRKFFYENWGNWRVCLTRATSKFERETFRYLEKHPKGFIPILQRISHEKMVLFFSAYQSHLWNEVLRKILRHSEQGEESCLKISRGIAGDYILYTQLDDRNKAYLSGLIIPMPASNIRMPDAFTKNLYAEVLKENNLKSSLFNIRKIRQAFFKGIERRAIVTPEDLSVDSAEDEIYQGRKKLALKFFLPRGCYGTMFIKRLFC</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXJ7</accession>
    <name>A0A0M2UXJ7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Alcohol dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01618</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the zinc-containing alcohol dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000169">
        <property type="protein sequence ID" value="KKO19686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19686">
        <property type="protein sequence ID" value="KKO19686"/>
        <property type="gene ID" value="BROFUL_01618"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002328">
        <property type="entry name" value="ADH_Zn_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00059">
        <property type="entry name" value="ADH_ZINC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="PKS_ER" evidence="3">
        <location>
            <begin position="9"/>
            <end position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU361277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO19686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="341" mass="37089" checksum="F59FDBED2C118262" modified="2015-11-11" version="1">MRVAMYYNNRDVRIEEMQTPHIGSGELLVKVRASGICGSDVMEWYRIKKAPLVLGHEIAGEIVAIGEGVTRFKVGDRVTVAHHVPCNTCHYCLNGQYSVCDTLRTTNFYPGGFSEYLRIPQINVDRGTFILPDEVSFEEGTFAEPLACTLLGQKKANLHPGQSILVIGSGISGLLHIQLARALGAGRICAVDITDYRLKMAKQCGADITIHAKENVPACLSKANNGRLADLVIVCTGATSAIQQAFNSVDRGGTILFFAPTEPNAITPVNLWDLWRNCNSIIMSYAGPPDDTAASIELIRAGRVKVRELITHRLGLADTALGFKLVAEAKDSIKVIIEPNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXP4</accession>
    <name>A0A0M2UXP4_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Antitoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_00927</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Antitoxin component of a type II toxin-antitoxin (TA) system.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the phD/YefM antitoxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000112">
        <property type="protein sequence ID" value="KKO20345.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20345">
        <property type="protein sequence ID" value="KKO20345"/>
        <property type="gene ID" value="BROFUL_00927"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006442">
        <property type="entry name" value="Antitoxin_Phd/YefM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036165">
        <property type="entry name" value="YefM-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02604">
        <property type="entry name" value="PhdYeFM_antitox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143120">
        <property type="entry name" value="SSF143120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="41"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009981"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20345.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="64" mass="7577" checksum="C37CBD8BC09B0B5F" modified="2015-11-11" version="1">MTLHPQIIEKDGKKEFVVLSYEEFLQIEEALEDFEDLKELRKEKEESKDQPTTPLDKVAKELNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXY1</accession>
    <name>A0A0M2UXY1_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Lysine--tRNA ligase</fullName>
            <ecNumber evidence="6">6.1.1.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Lysyl-tRNA synthetase</fullName>
            <shortName evidence="6">LysRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">lysS</name>
        <name evidence="9" type="ORF">BROFUL_00548</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">RU1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 6 7">
            <text>ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys)</text>
            <dbReference type="Rhea" id="RHEA:20792"/>
            <dbReference type="Rhea" id="RHEA-COMP:9696"/>
            <dbReference type="Rhea" id="RHEA-COMP:9697"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:32551"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78529"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6 7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="6 7">Binds 3 Mg(2+) ions per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.6" evidence="6"/>
    <dbReference type="EMBL" id="LAQJ01000077">
        <property type="protein sequence ID" value="KKO20712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20712">
        <property type="protein sequence ID" value="KKO20712"/>
        <property type="gene ID" value="BROFUL_00548"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.688"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004824">
        <property type="term" value="F:lysine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006430">
        <property type="term" value="P:lysyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00775">
        <property type="entry name" value="LysRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd04322">
        <property type="entry name" value="LysRS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00252">
        <property type="entry name" value="Lys_tRNA_synth_class2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004364">
        <property type="entry name" value="Aa-tRNA-synt_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002313">
        <property type="entry name" value="Lys-tRNA-ligase_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044136">
        <property type="entry name" value="Lys-tRNA-ligase_II_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018149">
        <property type="entry name" value="Lys-tRNA-synth_II_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004365">
        <property type="entry name" value="NA-bd_OB_tRNA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00152">
        <property type="entry name" value="tRNA-synt_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01336">
        <property type="entry name" value="tRNA_anti-codon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00982">
        <property type="entry name" value="TRNASYNTHLYS"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00499">
        <property type="entry name" value="lysS_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 6" id="KW-0436">Ligase</keyword>
    <keyword evidence="6 7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AA_TRNA_LIGASE_II" evidence="8">
        <location>
            <begin position="169"/>
            <end position="475"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="390"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="397"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00252"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000336"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="KKO20712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="476" mass="54835" checksum="88F02C0974BEDAE7" modified="2015-11-11" version="1">MEHFEQERLDKLQKLREKGVEPYGKRYDNTQSIQSILDSFIADRDDIKIRAAGRISTMRPHGKTAFLDIRDWTGKIQVYIKLDKVGPEKFELFKLLDLGDIVGVEGALFKTRTGEITIYADDFTVLTKSLLTPPEKWHGLKDVELRHRQRYVDLFTNTEVMDTFLKRIKIMKHIRKFLDDRGFVEVETPMMQSIPGGAVARPFITHHNALDIDLYLRIAPELYLKRLLVGGMERVYEINRNFRNEGISTKHNPEFTMMELYQAYSDYNGMMELTEGLVTSLVKELYGGYEIPFGERKIDMTPPWRRATFCELLKECSGVSFEDEAGLMRKSKELGLETQGVDRDNMANNIFEHTVEPTLNNPTFVLDYPTSICPLTKACEYDPRFAQRFELYMASMEVANSYSELNDAPEQDKRFREQLGTESDITGKIDEDFLTALKYGMPPAGGLGIGIDRLIMILTNNVSIREVILFPLLKPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXY2</accession>
    <name>A0A0M2UXY2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Serine--tRNA ligase</fullName>
            <ecNumber evidence="7">6.1.1.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Seryl-tRNA synthetase</fullName>
            <shortName evidence="7">SerRS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Seryl-tRNA(Ser/Sec) synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">serS</name>
        <name evidence="10" type="ORF">BROFUL_01469</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>ATP + L-serine + tRNA(Sec) = AMP + diphosphate + H(+) + L-seryl-tRNA(Sec)</text>
            <dbReference type="Rhea" id="RHEA:42580"/>
            <dbReference type="Rhea" id="RHEA-COMP:9742"/>
            <dbReference type="Rhea" id="RHEA-COMP:10128"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78533"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.11"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ATP + L-serine + tRNA(Ser) = AMP + diphosphate + H(+) + L-seryl-tRNA(Ser)</text>
            <dbReference type="Rhea" id="RHEA:12292"/>
            <dbReference type="Rhea" id="RHEA-COMP:9669"/>
            <dbReference type="Rhea" id="RHEA-COMP:9703"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78533"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.11"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Aminoacyl-tRNA biosynthesis; selenocysteinyl-tRNA(Sec) biosynthesis; L-seryl-tRNA(Sec) from L-serine and tRNA(Sec): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer. The tRNA molecule binds across the dimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="7">Consists of two distinct domains, a catalytic core and a N-terminal extension that is involved in tRNA binding.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the class-II aminoacyl-tRNA synthetase family. Type-1 seryl-tRNA synthetase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.11" evidence="7"/>
    <dbReference type="EMBL" id="LAQJ01000150">
        <property type="protein sequence ID" value="KKO19826.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19826">
        <property type="protein sequence ID" value="KKO19826"/>
        <property type="gene ID" value="BROFUL_01469"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1815"/>
    <dbReference type="UniPathway" id="UPA00906">
        <property type="reaction ID" value="UER00895"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004828">
        <property type="term" value="F:serine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016260">
        <property type="term" value="P:selenocysteine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097056">
        <property type="term" value="P:selenocysteinyl-tRNA(Sec) biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006434">
        <property type="term" value="P:seryl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00770">
        <property type="entry name" value="SerRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00176">
        <property type="entry name" value="Ser_tRNA_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002314">
        <property type="entry name" value="aa-tRNA-synt_IIb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002317">
        <property type="entry name" value="Ser-tRNA-ligase_type_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015866">
        <property type="entry name" value="Ser-tRNA-synth_1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042103">
        <property type="entry name" value="SerRS_1_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033729">
        <property type="entry name" value="SerRS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010978">
        <property type="entry name" value="tRNA-bd_arm"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43697">
        <property type="entry name" value="PTHR43697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02403">
        <property type="entry name" value="Seryl_tRNA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00587">
        <property type="entry name" value="tRNA-synt_2b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001529">
        <property type="entry name" value="Ser-tRNA-synth_IIa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00981">
        <property type="entry name" value="TRNASYNTHSER"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46589">
        <property type="entry name" value="SSF46589"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00414">
        <property type="entry name" value="serS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="4 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 7" id="KW-0436">Ligase</keyword>
    <keyword evidence="3 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 7" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AA_TRNA_LIGASE_II" evidence="9">
        <location>
            <begin position="172"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="region of interest" description="Serine binding" evidence="7">
        <location>
            <begin position="231"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="8">
        <location>
            <begin position="45"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="262"/>
            <end position="264"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="278"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="285"/>
        </location>
        <ligand>
            <name>L-serine</name>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="349"/>
            <end position="352"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="384"/>
        </location>
        <ligand>
            <name>L-serine</name>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO19826.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="491" mass="55316" checksum="5BECFDC4D3EF807B" modified="2015-11-11" version="1">MLDINFIRNNPDKVKQAIAHKQENAASVDQILELDTQRRSLIHACEQLKGKRNEKSKEVSELKKKGQDASSIIEETKKIGDEIKSLEERLKELEPQINNLLLRIPNTPAADVPVGKDASDNVIVKIWGQRKTFDFTPLPHWELGSLLNILDLERSSKITGSGFILLKGLGARLERALFSFMLDLHTREHGYTELFPPFLVNRTSMTGTGQLPKLEEDMYRTAPDDLFLVPTAEVPVTNIHRDEILSYKDLPVYYTAYTPCFRREAGSYGKDTRGIIRVHQFNKVELVKLVRPETSYDELESLLGNAEKVLQLLGLEYRVAKLCTGDMSFAAAKCYDIEVWAPGADKFLEVSSCSNFEDFQARRINIRFRDENSKLRLVHTLNGSGLALPRTVIAILETYQQKDGSIAIPEILQPYMEESRLLPGNKESPDPSISPMTIVWFSTRFLTPLIGRSSLPLGCACNMPDIKKTIAWSCDQIEDGVSSLSYSPAAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UXY9</accession>
    <name>A0A0M2UXY9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_01994</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000201">
        <property type="protein sequence ID" value="KKO19334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19334">
        <property type="protein sequence ID" value="KKO19334"/>
        <property type="gene ID" value="BROFUL_01994"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644091" evidence="1">
        <location>
            <begin position="21"/>
            <end position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO19334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="214" mass="22976" checksum="B0895747EE877F84" modified="2015-11-11" version="1">MKRNNLLVLLAIVISLTGCAPIFNDNFEADVIGDPPAVSPAGNPTDDSLNIQGPPNSITVINSIPLGSKSVKIDRAAKPPQVVLECVTGGGPHTTGNYLISYKAYSILADAVPNLTTSVKSSGGQHAFQLRLTDGNYRLASGGNPDEILPGGYAANVVHSISVRINMDTQRFWLNVDGTDVASEKTFLEAGFADVHLLRFEYPEPILERCRERM</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY15</accession>
    <name>A0A0M2UY15_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Outer membrane efflux protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01931</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000197">
        <property type="protein sequence ID" value="KKO19359.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19359">
        <property type="protein sequence ID" value="KKO19359"/>
        <property type="gene ID" value="BROFUL_01931"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003423">
        <property type="entry name" value="OMP_efflux"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02321">
        <property type="entry name" value="OEP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005644156" evidence="2">
        <location>
            <begin position="25"/>
            <end position="443"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19359.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="443" mass="50611" checksum="1E9322A390E9C63E" modified="2015-11-11" version="1">MNRMPLKKFLCCLLLISLSDVAVAADKGDSKPQKQMNGKNAVPEMKEADAPLDLTWLIQEAMEHNPEIVASQKRLSAAKARISQARSLDDPSVRAGSYDMSNNPVNLNGQTEMLQQRYGISQKIPFPGKLRLRGEVALEEYYMIEKELQAKMQEIIAQIKSAFYELYYLNNAIDVTGENRDLLSKFARVAETKYAVGKTTQRDVLAAQVELSTLANTGNVLNKERESVVARLNVLLDRPTQSLLGKPRPFEKHTLTLSIEELENLAVKNRPELKRFDHAVKRNEANLKLSKKDYYYSDFEPMVEYMQEDRRSDTWASAVTINVPWLWPKNRSKVKESREDLNAAKSDYRFMNNKTLFEVKDFLVKIQTSESTINLYKTGVIPQAEQSLKAARIGYETDRVDFLALIDSQRILLQARLLYARALADFEQNLAYLERVVGMQLTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY38</accession>
    <name>A0A0M2UY38_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DDE_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01389</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000145">
        <property type="protein sequence ID" value="KKO19876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19876">
        <property type="protein sequence ID" value="KKO19876"/>
        <property type="gene ID" value="BROFUL_01389"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038717">
        <property type="entry name" value="Tc1-like_DDE_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13358">
        <property type="entry name" value="DDE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0814">Transposable element</keyword>
    <feature type="domain" description="DDE_3" evidence="2">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO19876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="61" mass="7202" checksum="5BD0B40AD4170817" modified="2015-11-11" version="1" fragment="single">LHYLPGYSPELNPDEEVWNTVKTQKLNAKPIKDKKELHSVVLGSLRSIQKRPEQIKEFFRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UY54</accession>
    <name>A0A0M2UY54_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Phosphoglucomutase/phosphomannomutase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_00777</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the phosphohexose mutase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000099">
        <property type="protein sequence ID" value="KKO20490.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20490">
        <property type="protein sequence ID" value="KKO20490"/>
        <property type="gene ID" value="BROFUL_00777"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.984"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016868">
        <property type="term" value="F:intramolecular transferase activity, phosphotransferases"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005844">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016055">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-I/II/III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005845">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005846">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016066">
        <property type="entry name" value="A-D-PHexomutase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02878">
        <property type="entry name" value="PGM_PMM_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02879">
        <property type="entry name" value="PGM_PMM_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02880">
        <property type="entry name" value="PGM_PMM_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53738">
        <property type="entry name" value="SSF53738"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00710">
        <property type="entry name" value="PGM_PMM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PGM_PMM_I" evidence="3">
        <location>
            <begin position="44"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_II" evidence="4">
        <location>
            <begin position="229"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_III" evidence="5">
        <location>
            <begin position="324"/>
            <end position="436"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU004326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20490.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="448" mass="50109" checksum="BD0B76104F9B1E9D" modified="2015-11-11" version="1">MKTDRFKDARECWKVILADVRQNAGLLREIQRFARENTNPAEVAFGTSGWRGEIGADFTFNNVRIVATALLEMFKTSGQEVMESLGVKDFDEVKKRGIIVGHDNRFLGPEFASSVMGLLTKEGIKVYYAGEAITPEFSAAIEMLHAACSINLTPSHNPANYAGFKFNPADGGPAGPDITRVIEKHANRLMAEKTIVREVKPTSFERINPTRLYEDFLKKRGTLNLDRIRHFIEEEDCCLYIDHVHGATRGRPNALLGESPKIKYLRTEDDYLFGGIPPEPSAKNIKTVMDLLKGARAQFRLGVIMDPDGDRIRFTDGEADITMNHFGAMALHFFSAYKHISGVLVKSVATSNFGNAIAEKFGIPVRETAVGFKNFRPYMLQDAPERAIVAYEESDGISGYNNTLEKDALFGFLLALEMMAVTRKNLSAYLRELEEKFGAYLPERLASR</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYE6</accession>
    <name>A0A0M2UYE6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01781</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000186">
        <property type="protein sequence ID" value="KKO19504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19504">
        <property type="protein sequence ID" value="KKO19504"/>
        <property type="gene ID" value="BROFUL_01781"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="46" mass="5093" checksum="26B96FFCC66E3B6E" modified="2015-11-11" version="1">MNSMSLSRNSWYDTVGRVDEACPELAKGEVNRSIEFTVKSSVGKNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYS5</accession>
    <name>A0A0M2UYS5_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_00508</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000070">
        <property type="protein sequence ID" value="KKO20765.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20765">
        <property type="protein sequence ID" value="KKO20765"/>
        <property type="gene ID" value="BROFUL_00508"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035069">
        <property type="entry name" value="TTHA1013/TTHA0281-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143100">
        <property type="entry name" value="SSF143100"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO20765.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="88" mass="9916" checksum="F91AFF1371BE1B05" modified="2015-11-11" version="1">MVPINYDIIIFKEDETYLAYCPELDISSCGKTTEHAKDMLKTAVKLFLEEAEKMGTLGDILEESRYKKDASGRWIPPKLVATESISVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UYX9</accession>
    <name>A0A0M2UYX9_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Thiamine_BP domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01029</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0045 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20181.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20181">
        <property type="protein sequence ID" value="KKO20181"/>
        <property type="gene ID" value="BROFUL_01029"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.930">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029756">
        <property type="entry name" value="MTH1187/YkoF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002767">
        <property type="entry name" value="Thiamine_BP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01910">
        <property type="entry name" value="Thiamine_BP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89957">
        <property type="entry name" value="SSF89957"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00106">
        <property type="entry name" value="TIGR00106"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thiamine_BP" evidence="2">
        <location>
            <begin position="3"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20181.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="102" mass="11483" checksum="1F763ABAE6FA3F5E" modified="2015-11-11" version="1">MIAEISVVPIGKEIDLASHVAHVVKIIDASGLDYKLHAMGTVVEGESDQVFDLIRKCHNKMLESSERVYTTIKIDERKDKKAKMIEHKVLAVEKELGKSLRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ52</accession>
    <name>A0A0M2UZ52_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01538</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000159">
        <property type="protein sequence ID" value="KKO19749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19749">
        <property type="protein sequence ID" value="KKO19749"/>
        <property type="gene ID" value="BROFUL_01538"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="106" mass="12000" checksum="FA8E833C0C126F23" modified="2015-11-11" version="1">MNKKITFEKNNFKGVLLPKEFTADILVEGNNISGEPFVALNTNSGLPYVKDYYVRWGKPVGKDEPSGVILLTVRFEDEILENHKLKGSLSVNLYVQGATNYIINWH</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZ81</accession>
    <name>A0A0M2UZ81_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01505</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000155">
        <property type="protein sequence ID" value="KKO19779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19779">
        <property type="protein sequence ID" value="KKO19779"/>
        <property type="gene ID" value="BROFUL_01505"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="49" mass="5651" checksum="60A6391AAC6CE600" modified="2015-11-11" version="1">MSILSIAMLLSGLLFNYKRMKPPVHTAAIPDSEFIETQVRRENRIDYLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZA9</accession>
    <name>A0A0M2UZA9_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BROFUL_01477</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000151">
        <property type="protein sequence ID" value="KKO19809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO19809">
        <property type="protein sequence ID" value="KKO19809"/>
        <property type="gene ID" value="BROFUL_01477"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO19809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="41" mass="4775" checksum="3DA4E455E8436DA1" modified="2015-11-11" version="1">MRKAKKILRKLLSAFRDEIASKPITKERNSLVDSATFLIER</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZH7</accession>
    <name>A0A0M2UZH7_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Polyamine aminopropyltransferase</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Putrescine aminopropyltransferase</fullName>
            <shortName evidence="3">PAPT</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Spermidine synthase</fullName>
            <shortName evidence="3">SPDS</shortName>
            <shortName evidence="3">SPDSY</shortName>
            <ecNumber evidence="3">2.5.1.16</ecNumber>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">speE</name>
        <name evidence="6" type="ORF">BROFUL_00923</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>putrescine + S-adenosyl 3-(methylsulfanyl)propylamine = H(+) + S-methyl-5'-thioadenosine + spermidine</text>
            <dbReference type="Rhea" id="RHEA:12721"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17509"/>
            <dbReference type="ChEBI" id="CHEBI:57443"/>
            <dbReference type="ChEBI" id="CHEBI:57834"/>
            <dbReference type="ChEBI" id="CHEBI:326268"/>
            <dbReference type="EC" id="2.5.1.16"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amine and polyamine biosynthesis; spermidine biosynthesis; spermidine from putrescine: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer or homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the spermidine/spermine synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.16" evidence="3"/>
    <dbReference type="EMBL" id="LAQJ01000110">
        <property type="protein sequence ID" value="KKO20366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20366">
        <property type="protein sequence ID" value="KKO20366"/>
        <property type="gene ID" value="BROFUL_00923"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1163"/>
    <dbReference type="UniPathway" id="UPA00248">
        <property type="reaction ID" value="UER00314"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004766">
        <property type="term" value="F:spermidine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008295">
        <property type="term" value="P:spermidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.140.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00198">
        <property type="entry name" value="Spermidine_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030374">
        <property type="entry name" value="PABS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030373">
        <property type="entry name" value="PABS_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001045">
        <property type="entry name" value="Spermi_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035246">
        <property type="entry name" value="Spermidine_synt_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037163">
        <property type="entry name" value="Spermidine_synt_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17284">
        <property type="entry name" value="Spermine_synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01330">
        <property type="entry name" value="PABS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51006">
        <property type="entry name" value="PABS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 4" id="KW-0620">Polyamine biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0745">Spermidine biosynthesis</keyword>
    <keyword evidence="1 3 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PABS" evidence="5">
        <location>
            <begin position="6"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-methyl-5'-thioadenosine binding" evidence="3">
        <location>
            <begin position="142"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3 4">
        <location>
            <position position="160"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="35"/>
        </location>
        <ligand>
            <name>S-methyl-5'-thioadenosine</name>
            <dbReference type="ChEBI" id="CHEBI:17509"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="66"/>
        </location>
        <ligand>
            <name>spermidine</name>
            <dbReference type="ChEBI" id="CHEBI:57834"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="90"/>
        </location>
        <ligand>
            <name>spermidine</name>
            <dbReference type="ChEBI" id="CHEBI:57834"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="110"/>
        </location>
        <ligand>
            <name>S-methyl-5'-thioadenosine</name>
            <dbReference type="ChEBI" id="CHEBI:17509"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00354"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO20366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="315" mass="35848" checksum="75211B00AE4E21A1" modified="2015-11-11" version="1">MEKAQTHWLDDYFNNYEVHKHAFKDVVCQVQSSIQKIIIVNTYNYGRCLILDNEFQSAEMDEFIYHEALVHPSLILHPGAESVLILGGGEGATLREALRYKSVKKAVMVDIDKEMIACSQKYLPSFHAGAFDDNRVELVIEDGRKYVERAQDRFDVVVIDVNDPLEGGSSYMLFTMEFYQVIADKLKANGILIVHSGAASVSENDAFTSICNTLSNVFPHVFPYVTYIPSYALPWGFTMATHNPSNLDISGDEIDARIHSRLIGNLRFYDSITHHALFNLPKYLRTDIQRQKRIIRDKYPLTEHYPGISTESTSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZI7</accession>
    <name>A0A0M2UZI7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Hydroxylamine oxidoreductase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">hao_1</name>
        <name evidence="1" type="ORF">BROFUL_00019</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">RU1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="journal article" date="2021" name="Biopolymers" volume="112" first="e23428" last="e23428">
            <title>Purification of the key enzyme complexes of the anammox pathway from DEMON sludge.</title>
            <authorList>
                <person name="Akram M."/>
                <person name="Dietl A."/>
                <person name="Muller M."/>
                <person name="Barends T.R.M."/>
            </authorList>
            <dbReference type="PubMed" id="33798263"/>
            <dbReference type="DOI" id="10.1002/bip.23428"/>
        </citation>
        <scope>X-RAY CRYSTALLOGRAPHY (3.30 ANGSTROMS) OF 34-535</scope>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000005">
        <property type="protein sequence ID" value="KKO21247.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PDB" id="6T5E">
        <property type="method" value="X-ray"/>
        <property type="resolution" value="3.30 A"/>
        <property type="chains" value="A=34-535"/>
    </dbReference>
    <dbReference type="SMR" id="A0A0M2UZI7"/>
    <dbReference type="EnsemblBacteria" id="KKO21247">
        <property type="protein sequence ID" value="KKO21247"/>
        <property type="gene ID" value="BROFUL_00019"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036280">
        <property type="entry name" value="Multihaem_cyt_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48695">
        <property type="entry name" value="SSF48695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="evidence at protein level"/>
    <keyword evidence="3" id="KW-0002">3D-structure</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="KKO21247.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <evidence type="ECO:0007829" key="3">
        <source>
            <dbReference type="PDB" id="6T5E"/>
        </source>
    </evidence>
    <sequence length="535" mass="59727" checksum="5FCCE2E5E91FBF0C" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2UZY6</accession>
    <name>A0A0M2UZY6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BROFUL_01196</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase A24 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000127">
        <property type="protein sequence ID" value="KKO20084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20084">
        <property type="protein sequence ID" value="KKO20084"/>
        <property type="gene ID" value="BROFUL_01196"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.1478"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000045">
        <property type="entry name" value="Prepilin_IV_endopep_pep"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01478">
        <property type="entry name" value="Peptidase_A24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="33"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="58"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="102"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="147"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="184"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_A24" evidence="3">
        <location>
            <begin position="41"/>
            <end position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="219" mass="24135" checksum="81A4214E65152C13" modified="2015-11-11" version="1">MAKISIRYPLVELLTGYLFVHLYLFIQYRQESPCLFAGYLALCCALIISTFVDLEFLIIPNEVTCVGIPVALVLSVLCPGLHHEPETLRSFSLSGIIRLDALIASLLGVLVGGGLVFFCSVVGKWVFRKEAMGFGDVKLMGMVGGMVGWKLAVAIFFVAPFFGLLMGIPVLLLKKKHLIPYGPFLSLATLLCILLQDYFLGLMNSYVQLFTVLFTGFHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0D3</accession>
    <name>A0A0M2V0D3_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">GATase1_like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_01037</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000121">
        <property type="protein sequence ID" value="KKO20189.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20189">
        <property type="protein sequence ID" value="KKO20189"/>
        <property type="gene ID" value="BROFUL_01037"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010768">
        <property type="entry name" value="GATase1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07090">
        <property type="entry name" value="GATase1_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="17"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="GATase1_like" evidence="2">
        <location>
            <begin position="416"/>
            <end position="576"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20189.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="763" mass="85249" checksum="921D5A65F8A5BBEE" modified="2015-11-11" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0S7</accession>
    <name>A0A0M2V0S7_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Two-component sensor kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00966</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000116">
        <property type="protein sequence ID" value="KKO20334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20334">
        <property type="protein sequence ID" value="KKO20334"/>
        <property type="gene ID" value="BROFUL_00966"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Histidine kinase" evidence="2">
        <location>
            <begin position="23"/>
            <end position="260"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO20334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="260" mass="29190" checksum="FBB026B0D52DD5FE" modified="2015-11-11" version="1">MAFNQMCNKLKEMDQMKTDFVSHVSHDLKTPLTVIREANDLLLKKIAGPISSEQTKLLNITKEETIRLTMMINDLLDISRIEAGLMRYNFQESSLQDIIRKSADEIRFLAESKKIHIQWKKSGGLPKVLLDREKIAQVMDNLLSNAIKFTPSGGRIIITMSEVDSKTVPRFFAEQSRLNNICSFVQVSISDTGIGIPVECHKTIFDKFQQVSNKAKGGMKGTGLGLSIVKHIILDHGGDIWVERNTGGGEYVSFYSSLQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V0T0</accession>
    <name>A0A0M2V0T0_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Putative cobalt/zinc/cadmium cation efflux pump</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BROFUL_00937</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">RU1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000115">
        <property type="protein sequence ID" value="KKO20339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20339">
        <property type="protein sequence ID" value="KKO20339"/>
        <property type="gene ID" value="BROFUL_00937"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008324">
        <property type="term" value="F:cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1510.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1350">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002524">
        <property type="entry name" value="Cation_efflux"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027470">
        <property type="entry name" value="Cation_efflux_CTD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036837">
        <property type="entry name" value="Cation_efflux_CTD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027469">
        <property type="entry name" value="Cation_efflux_TMD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01545">
        <property type="entry name" value="Cation_efflux"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16916">
        <property type="entry name" value="ZT_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160240">
        <property type="entry name" value="SSF160240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161111">
        <property type="entry name" value="SSF161111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01297">
        <property type="entry name" value="CDF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="9"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="35"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="77"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="109"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="152"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="177"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="domain" description="ZT_dimer" evidence="7">
        <location>
            <begin position="207"/>
            <end position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF16916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="KKO20339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="283" mass="30570" checksum="73F9899EBDB1F033" modified="2015-11-11" version="1">MESKGRQATIILVICNIFLFAIKITAGIMSNSLAIISDAFNSLTDIISSVIIFFAVKVSSKAADDGHPFGHHRAEPIAGLIVAIFAGILGFEILHTAVFKLLDSYAPKIGIPAMITLLVSIGMKLFMSGYLKKVSHKINSPALLASSIDSRNDVCISSAALLGIIGGLLGYVRIDGIAAIFISFWIIYSGYKIGVNNIDYLMGKQPEDSIMEEIKKKAAAVSGVIGIHDVRAHYVGHYIHVEIHISVDHALTLTQAHNLGKNVQRTVESIESIHKAFVHIDPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V130</accession>
    <name>A0A0M2V130_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="4">H+-driven flagellar motor component MotB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">motB_2</name>
        <name evidence="4" type="ORF">BROFUL_00880</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000106">
        <property type="protein sequence ID" value="KKO20409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20409">
        <property type="protein sequence ID" value="KKO20409"/>
        <property type="gene ID" value="BROFUL_00880"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd07185">
        <property type="entry name" value="OmpA_C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006665">
        <property type="entry name" value="OmpA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036737">
        <property type="entry name" value="OmpA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00691">
        <property type="entry name" value="OmpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103088">
        <property type="entry name" value="SSF103088"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51123">
        <property type="entry name" value="OMPA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0966">Cell projection</keyword>
    <keyword evidence="4" id="KW-0969">Cilium</keyword>
    <keyword evidence="4" id="KW-0282">Flagellum</keyword>
    <keyword evidence="1 2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="23"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="domain" description="OmpA-like" evidence="3">
        <location>
            <begin position="113"/>
            <end position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="KKO20409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="232" mass="26182" checksum="8A21CBB313643862" modified="2015-11-11" version="1">MSSNPHYAHHKKKKLPASGTPDLFWTSYGSVITILLAFFIIFQVNFTEEKKKEFIEEFKKSVRRSNITFGMGGILPGWNAGSVEGIHKMKYIYPDRKNEAPESGDKGIDLFDKEEEQIPAAVVIEFNENDATLSIDGKQSLNTLINLVGGRPCSLVIEGHARKNFVPSREYATCWKLSLARAEAVAKYLRDKGNISSKRLITIGYGNNKPLMKDMRSDYYNDRVSIIISIVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1H6</accession>
    <name>A0A0M2V1H6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00279</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000032">
        <property type="protein sequence ID" value="KKO20996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO20996">
        <property type="protein sequence ID" value="KKO20996"/>
        <property type="gene ID" value="BROFUL_00279"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004027">
        <property type="entry name" value="SEC_C_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02810">
        <property type="entry name" value="SEC-C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="SSF48371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="381"/>
            <end position="401"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO20996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="434" mass="49482" checksum="E190D72FC068C820" modified="2015-11-11" version="1">MTRLPDSKVKQAILHPEREVRYVAIKYFSDSFSNDTGVMPVVIDAIEKYGWEHSYSIVGCASSLPQTDETIHWALNELSRGINKADMDQVNYFYNLSRVLAGADPGMLLQHKAEIMESGGLSADFKKNNMKRIDMLSWDGDVCWNALEDFCNVNKTKRYINEVNLGYAFQIIEALSRVGERYCDRIVSRLAEEIKDFENNPTKWMTPLIVALAGKMRLTSAVPLIIEKLKIDSDFLAEECMFALSRIGTDSVIEAVSDVFSDTDSHFRSYASGIFRRIHSDLSVKRSLAFLEKEEDYGIRTMLGMALLNNFAYDGLEIVRKLIIDEIYEPFITDLQEDLIIACTIMEERIPEYEEWKEAVGQRRAKAEERKRNFFGKLPRSGRDEGVDYHTSGDTTQNDQKTHTIFRDAPKIGRNEPCPCGSGKKYKKCCLGKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1M6</accession>
    <name>A0A0M2V1M6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="6">NAD(P) oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BROFUL_00222</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000027">
        <property type="protein sequence ID" value="KKO21051.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21051">
        <property type="protein sequence ID" value="KKO21051"/>
        <property type="gene ID" value="BROFUL_00222"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12838">
        <property type="entry name" value="Fer4_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="341"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="390"/>
            <end position="419"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="284"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="292"/>
            <end position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="KKO21051.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="424" mass="46912" checksum="9384C7C44F136C3C" modified="2015-11-11" version="1">MLSVGIPPYRLPRETIEDAVNWIKALGVDIRLNNPIDTPDAFDALLREYSAVYLATGAHRSQMLEIPGEELEGVLHGVTFMKDTNLGLRKTVPERVAVLGGGFTAIDCARSSLRLGAKEVSVMYRRTLEEMPAGELEVRMAGQEGIQMHYLTSPVRITGGHDRRVTHIECIKNTLGEPDEKGRRRPVPVKGSNFMVPVDLIIAAIGQSPDMGFLSERCGIKINHWGMPVVDAEDFMTTRPGVFAGGDCVTGPRNVIEVIADGRKAARAIHRFLTGEERNGYTFYYKDQSPSDRMPNYESAPRQSQDALPMSKRQNLDTEVELGLSKENTSKEAGRCLLCHYNIFIDETCILCGGCIDVCPYNCISMVSREEVEIADKSGDEGAVTGDWDAVMVLDEEKCIRCGLCVKRCPVNAITMKRFAYAVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V1N4</accession>
    <name>A0A0M2V1N4_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative muconolactone delta-isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00218</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000026">
        <property type="protein sequence ID" value="KKO21061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21061">
        <property type="protein sequence ID" value="KKO21061"/>
        <property type="gene ID" value="BROFUL_00218"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026029">
        <property type="entry name" value="MLI_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02426">
        <property type="entry name" value="MIase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MIase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02426"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="103" mass="11831" checksum="B83713007B601A79" modified="2015-11-11" version="1">MLFLLKVEIKQMPQMPVKDFLGYVIKEWEYFSRFQRRGKILAGGKLAGKRGAAAIIDAESNEEMDEIVSKLPLFPFFTDIEITPLVPMEKALLDTTRIHSLMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2U1</accession>
    <name>A0A0M2V2U1_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00253</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0235 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000031">
        <property type="protein sequence ID" value="KKO21004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21004">
        <property type="protein sequence ID" value="KKO21004"/>
        <property type="gene ID" value="BROFUL_00253"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1200.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003746">
        <property type="entry name" value="DUF167"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036591">
        <property type="entry name" value="YggU-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02594">
        <property type="entry name" value="DUF167"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01152">
        <property type="entry name" value="DUF167"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69786">
        <property type="entry name" value="SSF69786"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010364"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="62" mass="6717" checksum="8A7466C1FDCC2034" modified="2015-11-11" version="1">MAVTAAPEKGKANKAVIELLADILRINESSIHIISGESSRDKRLMIEGLTPEYVKPLLNPSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V2W2</accession>
    <name>A0A0M2V2W2_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Antitoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BROFUL_00241</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">RU1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Antitoxin component of a type II toxin-antitoxin (TA) system.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the phD/YefM antitoxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000030">
        <property type="protein sequence ID" value="KKO21024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21024">
        <property type="protein sequence ID" value="KKO21024"/>
        <property type="gene ID" value="BROFUL_00241"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006442">
        <property type="entry name" value="Antitoxin_Phd/YefM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036165">
        <property type="entry name" value="YefM-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02604">
        <property type="entry name" value="PhdYeFM_antitox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143120">
        <property type="entry name" value="SSF143120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009981"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="KKO21024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="72" mass="8036" checksum="2C609E8005C7A7AF" modified="2015-11-11" version="1">MTTYTFSEARQKLSSVLEKARSEGEVLIKRKDGSTFVVKPVSAKKSPLDVTGVNVNLSAKEIVDIVREIRER</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V370</accession>
    <name>A0A0M2V370_9BACT</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Glyceraldehyde-3-phosphate dehydrogenase</fullName>
            <ecNumber evidence="8">1.2.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">gap</name>
        <name evidence="10" type="ORF">BROFUL_00149</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">RU1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.-" evidence="8"/>
    <dbReference type="EMBL" id="LAQJ01000017">
        <property type="protein sequence ID" value="KKO21104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21104">
        <property type="protein sequence ID" value="KKO21104"/>
        <property type="gene ID" value="BROFUL_00149"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.187"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006006">
        <property type="term" value="P:glucose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020831">
        <property type="entry name" value="GlycerAld/Erythrose_P_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020830">
        <property type="entry name" value="GlycerAld_3-P_DH_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020829">
        <property type="entry name" value="GlycerAld_3-P_DH_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020828">
        <property type="entry name" value="GlycerAld_3-P_DH_NAD(P)-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006424">
        <property type="entry name" value="Glyceraldehyde-3-P_DH_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43148">
        <property type="entry name" value="PTHR43148"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02800">
        <property type="entry name" value="Gp_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00044">
        <property type="entry name" value="Gp_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000149">
        <property type="entry name" value="GAP_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00078">
        <property type="entry name" value="G3PDHDRGNASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00846">
        <property type="entry name" value="Gp_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01534">
        <property type="entry name" value="GAPDH-I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00071">
        <property type="entry name" value="GAPDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 8 10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Gp_dh_N" evidence="9">
        <location>
            <begin position="3"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="region of interest" description="Glyceraldehyde 3-phosphate binding" evidence="4">
        <location>
            <begin position="151"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="region of interest" description="Glyceraldehyde 3-phosphate binding" evidence="4">
        <location>
            <begin position="210"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="3">
        <location>
            <position position="152"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="12"/>
            <end position="13"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="34"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="120"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="182"/>
        </location>
        <ligand>
            <name>D-glyceraldehyde 3-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="233"/>
        </location>
        <ligand>
            <name>D-glyceraldehyde 3-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="315"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="site" description="Activates thiol group during catalysis" evidence="6">
        <location>
            <position position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000149-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000149-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000149-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000149-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000397"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU361160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="KKO21104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="333" mass="35740" checksum="67C0556292E4A876" modified="2015-11-11" version="1">MAIKVGINGFGRIGRNVFRAIAQRGGIDVLAINDLADAKSLALLLKYDSVHGKFNGSVEAKEKSLLVNGKEVALLMEKDPTKLPWKALGVDIAIESTGIFTSRAECAKHLDAGAKKVILSAPAKDKIDATIVIGVNNKDLKPEHKIVSNASCTTNCLAPLAKVMNDNFGIEKGLMTTIHAYTNDQRISDLIHKDLRRARAAAVNIIPTTTGAAKAIGEVIPALKGKLDGLAMRVPVVNGSVTDLVAIVSKDITVEAVNAAMKKAAEGELKGILEYCTDPIVSSDIIGNTHSSIFDAALTYIIDKRMVKVVAWYDNEWGFSNRMVDLIELVARQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2015-11-11" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A0M2V3H6</accession>
    <name>A0A0M2V3H6_9BACT</name>
    <protein>
        <submittedName>
            <fullName evidence="2">2-oxoglutarate dehydrogenase E1-beta subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BROFUL_00053</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Candidatus Brocadia fulgida</name>
        <dbReference type="NCBI Taxonomy" id="380242"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Planctomycetes</taxon>
            <taxon>Candidatus Brocadiia</taxon>
            <taxon>Candidatus Brocadiales</taxon>
            <taxon>Candidatus Brocadiaceae</taxon>
            <taxon>Candidatus Brocadia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2013" name="BMC Microbiol." volume="13" first="265" last="265">
            <title>Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.</title>
            <authorList>
                <person name="Ferousi C."/>
                <person name="Speth D.R."/>
                <person name="Reimann J."/>
                <person name="Op den Camp H.J."/>
                <person name="Allen J.W."/>
                <person name="Keltjens J.T."/>
                <person name="Jetten M.S."/>
            </authorList>
            <dbReference type="PubMed" id="24267221"/>
            <dbReference type="DOI" id="10.1186/1471-2180-13-265"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">RU1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LAQJ01000007">
        <property type="protein sequence ID" value="KKO21214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="KKO21214">
        <property type="protein sequence ID" value="KKO21214"/>
        <property type="gene ID" value="BROFUL_00053"/>
    </dbReference>
    <dbReference type="PATRIC" id="fig|380242.3.peg.66"/>
    <dbReference type="Proteomes" id="UP000034954">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005475">
        <property type="entry name" value="Transketolase-like_Pyr-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033248">
        <property type="entry name" value="Transketolase_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02779">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02780">
        <property type="entry name" value="Transketolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00861">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52922">
        <property type="entry name" value="SSF52922"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transket_pyr" evidence="1">
        <location>
            <begin position="4"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00861"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="KKO21214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000034954"/>
        </source>
    </evidence>
    <sequence length="324" mass="35527" checksum="DCA920EA6EA2932F" modified="2015-11-11" version="1">MKEITYLEAIKEALDEEMARDAGVFILGEDVGVYGGAFRVTEGLFNKYGEWRVLDTPLSESGFTGAAIGAALVGMRPVVEMQFADFISCAFDQLVNVAAKNHYRWGGATPIVIRAPYGGNIHGGAFHSQCIEGFFFNVPGLKIVAPSTAYDAKGLLKASIRDNDPVIYCEHKYLYRRIKDSVPEEDYVVPIGKARTALEGKDVSIITYGAMIHTALEAAQTLRQNGISCEVIDLRTILPLDKKAIFDTVKKTNKVAVLHEQTKTGGVGAEVSALINEYCFDFLDAPIIRIAALDTPVPYSAQMEEAFLPQTKDVISAVEKLMRY</sequence>
</entry>
<copyright>
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms Distributed under the Creative Commons Attribution (CC BY 4.0) License
</copyright>
</uniprot>